Lecture Notes

SeS # TOPICS INSTRUCTORS LECTURE NOTES
Overview
1 Introduction to Course

Introduction to Functional Magnetic Resonance Imaging
Rick Hoge
Functional Neural Systems
2 Overview of Neural Systems: Neural Systems I Brad Dickerson (PDF)
3 Overview of Neural Systems: Neural Systems II Brad Dickerson
4 Overview of Neural Systems: Neural Systems III Brad Dickerson
Imaging Physiology
5 Overview of Imaging Physiology

Applied Respiratory and Cardiovascular Physiology I
Robert Banzett (PDF)
6 Applied Respiratory and Cardiovascular Physiology II Robert Banzett
7 Cerebrovascular Anatomy and Neural Regulation of CNS Blood Flow Brad Dickerson (PDF)
8 Neurovascular Coupling. Global vs. Regionally Specific Changes in CBF and Metabolism Brad Dickerson
Experiment Design
9 General Principles of Experimental Design, point 1 Robert Savoy
10 General Principles of Experimental Design, point 2

Psychological State Variables in Imaging
Robert Savoy
Physics of Image Acquisition
11 Overview of Structural and Functional MRI Signal Acquisition Larry Wald (PDF - 1.3 MB)
12 MRI Physics I Jorge Jovicich (PDF)
13 MRI Physics II Larry Wald (PDF - 2.9 MB)
14 MRI Physics III Larry Wald (PDF)

(PDF)

(PDF)
15 MRI Physics IV Jorge Jovicich (PDF)
16 Physics of Diffusion Weighted Imaging David Tuch
17 Diffusion Weighted Imaging II David Tuch
Mid-term Exam
Statistical Analysis
18 Overview of fMRI Statistical Analysis. Stats I Doug Greve (PDF)

(PDF)
19 Overview of fMRI Statistical Analysis. Stats II Doug Greve
20 Overview of fMRI Statistical Analysis. Stats III Doug Greve (PDF)
21 Overview of fMRI Statistical Analysis. Stats IV Mark Vangel (PDF)
22 Overview of fMRI Statistical Analysis. Stats V Mark Vangel
23 Overview of fMRI Statistical Analysis. Stats VI Mark Vangel
Structural and Functional Analysis
24 Spatial Normalization for Anatomical Analysis

DTI Applications
David Kennedy
25 Surface-based Anatomical Analysis David Salat
Final Exam