Browsing Synthetic Biology by Title
Now showing items 39-58 of 139
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Cellular computation and communications using engineered genetic regulatory networks
(Massachusetts Institute of Technology, 2001)In this thesis, I present an engineering discipline for obtaining complex, predictable, and reliable cell behaviors by embedding biochemical logic circuits and programmed intercellular communications into cells. To accomplish ... -
Cellular Computing, ISAT Summer Study, August 1996
(2016-01-27)Create and exploit a novel technology for information processing and manufacturing by controlling processes in living cells. -
Cellular Gate Technology
(First International Conference on UNCONVENTIONAL MODELS OF COMPUTATION, Auckland, New Zealand, 1998-01-05)We propose a biochemically plausible mechanism for constructing digital logic signals and gates of significant complexity within living cells. These mechanisms rely largely on co-opting existing biochemical machinery and ... -
Cloning Standard for Mammalian BioBrick Parts and Devices
(2009-10-21)To introduce a common cloning standard for BioBrick parts that find application in mammalian cells. -
Code accompanying "Analysis of Targeted and Combinatorial Approaches to Phage T7 Genome Generation" Master's Thesis
(2006-11-26)Code accompanying "Analysis of Targeted and Combinatorial Approaches to Phage T7 Genome Generation" Master's Thesis. -
Code for simulation of a post-translational latch
(2008-05-14) -
Code for simulation of a post-translational latch: ODEs (1)
(2008-05-14) -
Code for simulation of a post-translational latch: ODEs (2)
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Constraint Relaxation of RFC 10 for Assembling Standard Biological Parts
(2009-03-30)This Request for Comments (RFC) modifies the assembly standard for biological parts proposed in BBF RFC 10 by replacing PstI with SbfI and dropping other sequence constraints. This change relaxes the constraints on the ... -
Construction a RBS library with different translational activity
(2010-12-05)The first step in programming and controlling cell behavior is to establish a library of well-defined components, a.k.a. "biobricks", that serve as the building blocks of artificial gene networks. The main challenge in ... -
Conversion of Freiburg (Fusion) Biobricks to the Silver (BioFusion) format
(2009-03-30)This Request for Comments (RFC) describes a strategy for converting Biobricks from the Freiburg (aka Fusion) format to the Silver lab (aka BioFusion) format. -
Creating native registry functions to accommodate mutant libraries
(2011-12-29)The current registry system accommodates normal parts fairly well but has difficulty when adding mutant libraries. If all mutant offspring were added as new parts, the registry would be comprehensive but the parts registry ... -
DARPA BioComp Plasmid Distribution 1.00 of Standard Biobrick Components
(MIT Artificial Intelligence Laboratory, 2002-05-22)This distribution consists of 300 ng aliquots of plasmid DNA for each of twelve components and compound constructs utilizing our idempotent assembly strategy. The dried DNA should be stable at room temperature for many ... -
Definitions and Measures of Performance for Standard Biological Parts
(2006-03-16)We are working to enable the engineering of integrated biological systems. Specifically, we would like to be able to build systems using standard parts that, when combined, have reliable and predictable behavior. Here, ... -
Design and Evolution of Engineered Biological Systems
(2005-08-11)To date, engineered biological systems have been constructed via a variety of ad hoc approaches. The resulting systems should be thought of as pieces of art. Here, I propose to explore how existing forward engineering ... -
Design and Evolution of Engineered Biological Systems
(Sixth International Conference on Systems Biology, 2005-10-20)To date, engineered biological systems have been constructed via a variety of ad hoc approaches. The resulting systems should be thought of as pieces of art. We are interested in exploring how existing forward ... -
Design of Specific Mammalian Promoters by in silico Prediction
(2009-10-30)The purpose of this RFC is to provide a) a method for the design of rational synthetic promoter sequences based on a statistical analysis about the spatial preference of transcription factor binding sites in human promoter ... -
Detailed Information Standard
(2010-12-05)The purpose of this standard is to increase the required information that must accompany any parts submitted to the Registry of Standard Biological Parts. This will give users of the parts better assurance of their ... -
Documentation of BioBrick parts
(2010-12-05)Purpose of this RFC is to improve the information supplied by BioBrick part vendors. Reason to have this RFC is that there would be much more information available which can help improve the search time of the user. ...