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Browsing MIT Open Access Articles by Title

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  • Ferguson, Andrew L.; Falkowska, Emilia; Walker, Laura M.; Seaman, Michael S.; Burton, Dennis R.; Chakraborty, Arup K. (Public Library of Science, 2013-12)
    Broadly neutralizing monoclonal antibodies effective against the majority of circulating isolates of HIV-1 have been isolated from a small number of infected individuals. Definition of the conformational epitopes on the ...
  • Berger, Bonnie; Peng, Jian; Singh, Mona (Nature Publishing Group, 2013-04)
    High-throughput experimental technologies are generating increasingly massive and complex genomic data sets. The sheer enormity and heterogeneity of these data threaten to make the arising problems computationally infeasible. ...
  • Haslinger, Robert Heinz; Klinkner, Kristina Lisa; Cosma, Rohilla Shalizi (MIT Press, 2010-01)
    Neurons perform computations, and convey the results of those computations through the statistical structure of their output spike trains. Here we present a practical method, grounded in the information-theoretic ...
  • Duda, Timothy F.; Lin, Ying-Tsong; Zhang, Weifeng Gordon; Cornuelle, Bruce D.; Lermusiaux, Pierre F.J. (2011-04)
    Time-evolving three-dimensional (four-dimensional) numerical modeling of sound is performed for ocean environmental conditions calculated using regional ocean flow models. The flow models solve the appropriate nonlinear ...
  • Zhao, Wei; Dauwels, Justin H. G.; Niles, Jacquin; Cao, Jianshu (BioMed Central Ltd, 2012-06)
    Background Microarrays are widely used to investigate the blood stage of Plasmodium falciparum infection. Starting with synchronized cells, gene expression levels are continually measured over the 48-hour intra-erythrocytic ...
  • Rajapakse, Jagath (Institute of Electrical and Electronics Engineers, 2009-07)
    Bioinformatics data come in various forms such as biological sequences, molecular structures, gene and protein expressions, molecular networks, cellular images, and literature. A major aspect of discovering biological ...
  • Hafner, Michael R.; Del Vecchio, Domitilla (Society for Industrial and Applied Mathematics, 2011-12)
    This paper addresses the two-agent safety control problem for piecewise continuous systems with disturbances and imperfect state information. In particular, we focus on a class of systems that evolve on a partial order and ...
  • Hasanhodzic, Jasmina; Lo, Andrew W.; Viola, Emanuele (Taylor & Francis, 2011-06)
    We study market efficiency from a computational viewpoint. Borrowing from theoretical computer science, we define a market to be efficient with respect to resources S (e.g., time, memory) if no strategy using resources S ...
  • Rutishauser, Ueli; Douglas, Rodney J.; Slotine, Jean-Jacques E. (Public Library of Science, 2015-01)
    Previous explanations of computations performed by recurrent networks have focused on symmetrically connected saturating neurons and their convergence toward attractors. Here we analyze the behavior of asymmetrical connected ...
  • Reid, M. T. Homer; White, Jacob K.; Johnson, Steven G. (American Physical Society, 2011-07)
    We extend a recently introduced method for computing Casimir forces between arbitrarily shaped metallic objects [ M. T. H. Reid et al. Phys. Rev. Lett. 103 040401 (2009)] to allow treatment of objects with arbitrary material ...
  • Rausch, Sebastian; Rutherford, Thomas Fox (Springer Netherlands, 2010-06)
    This paper develops a decomposition algorithm by which a market economy with many households may be solved through the computation of equilibria for a sequence of representative agent economies. The paper examines local ...
  • Green, William H.; Sharma, Sandeep (American Chemical Society, 2009-07)
    Using quantum chemical methods, we have explored the region of the C[subscript 6]H[subscript 8] potential energy surface that is relevant in predicting the rate coefficients of various wells and major product channels ...
  • Amarasinghe, Saman P.; Amin, Nada; Thies, William (Institute of Electrical and Electronics Engineers, 2009-01)
    Microfluidic chips are emerging as a powerful platform for automating biology experiments. As it becomes possible to integrate tens of thousands of components on a single chip, researchers will require design automation ...
  • Neugebauer, Timothy C.; Perreault, David J. (Institute of Electrical and Electronics Engineers (IEEE), 2003-05)
    This paper investigates computer-aided optimization of DC/DC converters, with a focus on converters for dual-voltage automotive electrical systems. A new CAD optimization approach based on Monte Carlo search methods is ...
  • Page, Damon T.; Kuti, Orsolya J. (Frontiers Research Foundation, 2009-11)
    Altered sociability is a core feature of a variety of human neurological disorders, including autism. Social behaviors may be tested in animal models, such as mice, to study the biological basis of sociability and how this ...
  • Levy, Frank (American Roentgen Ray Society, 2009-05)
    I want to thank Steven Seltzer and the Brigham radiology community for the opportunity to speak today. The invitation is both an honor and a responsibility. It is an honor to follow the distinguished group of previous ...
  • Chiu, Kevin Geeyoung; Raskar, Ramesh (Institute of Electrical and Electronics Engineers, 2009-08)
    We demonstrate a concept of computer vision as a secure, live service on the Internet. We show a platform to distribute a real time vision algorithm using simple widely available Web technologies, such as Adobe Flash. We ...
  • Holroyd, Michael; Baran, Ilya; Lawrence, Jason; Matusik, Wojciech (Association for Computing Machinery (ACM), 2011-12)
    We present a method for automatically converting a digital 3D model into a multilayer model: a parallel stack of high-resolution 2D images embedded within a semi-transparent medium. Multilayer models can be produced quickly ...
  • Kim, Anthony; Medard, Muriel (Institute of Electrical and Electronics Engineers (IEEE), 2011-10)
    We define a notion of network capacity region of networks that generalizes the notion of network capacity defined by Cannons et al. and prove its notable properties such as closedness, boundedness and convexity when the ...
  • Wilson, Matthew A.; Brown, Emery N.; Sarma, Sridevi V.; Nguyen, David P.; Czanner, Gabriela; Wirth, Sylvia; Suzuki, Wendy (MIT Press, 2011-09)
    Characterizing neural spiking activity as a function of intrinsic and extrinsic factors is important in neuroscience. Point process models are valuable for capturing such information; however, the process of fully applying ...
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