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Browsing MIT Open Access Articles by Title

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  • Gnerre, Sante; MacCallum, Iain; Przybylski, Dariusz; Ribeiro, Felipe J.; Burton, Joshua; Walker, Bruce J.; Sharpe, Ted; Hall, Giles; Shea, Terrance P.; Sykes, Sean; Berlin, Aaron M.; Aird, Daniel; Costello, Maura; Daza, Riza; Williams, Louise; Nicol, Robert; Gnirke, Andreas; Nusbaum, Chad; Lander, Eric S.; Jaffe, David B. (National Academy of Sciences, 2010-12)
    Massively parallel DNA sequencing technologies are revolutionizing genomics by making it possible to generate billions of relatively short (~100-base) sequence reads at very low cost. Whereas such data can be readily used ...
  • Roberts, Tony D.; Battle, Philip; Zhong, Tian; Hu, Xiaolong; Wong, Franco N. C.; Berggren, Karl K. (Optical Society of America, 2010-04)
    We demonstrate high-quality distribution of 1.3 mu m polarization-entangled photons generated from a fiber-coupled periodically poled KTiOPO[subscript 4] waveguide over 200 m fiber-optic cables. Time-multiplexed measurements ...
  • Liu, Ce; Freeman, William T. (Springer Berlin / Heidelberg, 2010-09)
    Although the recent advances in the sparse representations of images have achieved outstanding denosing results, removing real, structured noise in digital videos remains a challenging problem. We show the utility of ...
  • Li, Sa; Zhao, Yu Cheng; Wang, Chao; Wang, Chang An; Li, Ju; Niu, Jun Jie; So, Kangpyo (Nature Publishing Group, 2015-08)
    Alloy-type anodes such as silicon and tin are gaining popularity in rechargeable Li-ion batteries, but their rate/cycling capabilities should be improved. Here by making yolk-shell nanocomposite of aluminium core (30 nm ...
  • Huang, Albert S.; Olson, Edwin B.; Antone, Matthew; Fletcher, Luke Sebastian; Moore, David C.; Teller, Seth; Leonard, John Joseph (Sage Publications, 2010-11)
    This paper describes a data set collected by MIT’s autonomous vehicle Talos during the 2007 DARPA Urban Challenge. Data from a high-precision navigation system, five cameras, 12 SICK planar laser range scanners, and a ...
  • Ma, Xiaohua; Kang, Byoungwoo; Ceder, Gerbrand (Electrochemical Society, 2010-06)
    Ordered LiNi[subscript 0.5]Mn[subscript 1.5]O[subscript 4] was synthesized through a solid-state reaction. Even though the material has a particle size of 3–5μm , it shows very high rate capability and excellent capacity ...
  • Spellmeyer, Neal W.; Kerman, Andrew J.; Molnar, Richard J.; Berggren, Karl K.; Moores, John D.; Hamilton, Scott A. (Institute of Electrical and Electronics Engineers (IEEE), 2010-07)
    We demonstrate the potential for 1.85 Mbit/s secure key rates over 101 km of fiber, >100 times faster than previously demonstrated, using the differential phase shift quantum key distribution protocol and superconducting ...
  • Bautz, Marshall W.; McDonald, Michael A. (Institute of Physics/American Astronomical Society, 2012-12)
    We report the first investigation of cool-core properties of galaxy clusters selected via their Sunyaev-Zel'dovich (SZ) effect. We use 13 galaxy clusters uniformly selected from 178 deg[superscript 2] observed with the ...
  • Ippen, Erich P.; Morse, Jonathan Lee; Sickler, J. L.; Chen, J.; Kaertner, Franz X. (Institute of Electrical and Electronics Engineers, 2009-08)
    A 301 MHz fundamentally mode-locked erbium fiber ring laser generating 108 fs pulses is demonstrated. Novel combination of gain fiber with anomalous group-velocity dispersion and intra-cavity silicon with normal group-velocity ...
  • Laserson, Uri; Vigneault, Francois; Gadala-Maria, Daniel; Yaari, Gur; Uduman, Mohamed; Vander Heiden, Jason A.; Kelton, William; Jung, Sang Taek; Liu, Yi; Laserson, Jonathan; Chari, Raj; Lee, Je-Hyuk; Bachelet, Ido; Hickey, Brendan; Lieberman-Aiden, Erez; Hanczaruk, Bozena; Simen, Birgitte B.; Egholm, Michael; Koller, Daphne; Georgiou, George; Kleinstein, Steven H.; Church, George M. (National Academy of Sciences (U.S.), 2014-03)
    The adaptive immune system confers protection by generating a diverse repertoire of antibody receptors that are rapidly expanded and contracted in response to specific targets. Next-generation DNA sequencing now provides ...
  • Garland, Carl W.; Iannacchione, G. S. (American Physical Society, 2009-01)
    High-resolution ac calorimetry has been used to study the nematic to smectic-A (N-SmA) phase transition in the liquid crystal octylcyanobiphenyl (8CB) confined in aligned colloidal aerosil gels. A stable and robust nematic ...
  • Zhu, Cong; Byers, Kelsey J.R.P.; McCord, Rachel P.; Shi, Zhenwei; Berger, Michael F.; Newburger, Daniel E.; Saulrieta, Katrina; Smith, Zachary; Shah, Mita V.; Radhakrishnan, Mathangi; Philippakis, Anthony A.; Hu, Yanhui; De Masi, Federico; Pacek, Marcin; Rolfs, Andreas; Murthy, Tal; LaBaer, Joshua; Bulyk, Martha L. (Cold Spring Harbor Laboratory Press, 2009-01)
    Transcription factors (TFs) regulate the expression of genes through sequence-specific interactions with DNA-binding sites. However, despite recent progress in identifying in vivo TF binding sites by microarray readout of ...
  • Aernecke, M.; Jain, Tarun; Liberman, Vladimir; Karnik, Rohit (American Institute of Physics (AIP), 2014-02)
    Nanostencil lithography has a number of distinct benefits that make it an attractive nanofabrication processes, but the inability to fabricate features with nanometer precision has significantly limited its utility. In ...
  • Edwards, Matthew Douglas; Gifford, David K. (BioMed Central Ltd, 2012-04)
    Background: Modern genetics has been transformed by high-throughput sequencing. New experimental designs in model organisms involve analyzing many individuals, pooled and sequenced in groups for increased efficiency. ...
  • Edwards, Matthew Douglas; Gifford, David K. (BioMed Central, 2012-04)
    Background: Modern genetics has been transformed by high-throughput sequencing. New experimental designs in model organisms involve analyzing many individuals, pooled and sequenced in groups for increased efficiency. ...
  • Guo, Yuchun; Mahony, Shaun (Public Library of Science, 2012-08)
    An essential component of genome function is the syntax of genomic regulatory elements that determine how diverse transcription factors interact to orchestrate a program of regulatory control. A precise characterization ...
  • Ren, Y.; Hovenier, J. N.; Higgins, R.; Gao, J. R.; Klapwijk, T. M.; Shi, S. C.; Klein, B.; Reno, J. L.; Kao, Tsung-Yu; Hu, Qing (American Institute of Physics (AIP), 2011-06)
    A frequency tunable terahertz heterodynespectrometer, based on a third-order distributed feedback quantum cascade laser as a local oscillator, has been demonstrated by measuring molecular spectral lines of methanol ...
  • Goossens, Sander; Sabaka, Terence J.; Nicholas, Joseph B.; Lemoine, Frank G.; Rowlands, David D.; Mazarico, Erwan Matias; Neumann, Gregory A.; Smith, David Edmund; Zuber, Maria (American Geophysical Union (AGU), 2014-05)
    We estimated a high-resolution local gravity field model over the south pole of the Moon using data from the Gravity Recovery and Interior Laboratory's extended mission. Our solution consists of adjustments with respect ...
  • Mag Washietl, Stefan; Kheradpour, Pouya; Ernst, Jason; Ward, Lucas D.; Jungreis, Irwin; Rasmussen, Matthew D.; Kellis, Manolis (Nature Publishing Group, 2011-10)
    The comparison of related genomes has emerged as a powerful lens for genome interpretation. Here we report the sequencing and comparative analysis of 29 eutherian genomes. We confirm that at least 5.5% of the human genome ...
  • Reeder, Christopher; Closser, Michael; Poh, Huay Mei; Sandhu, Kuljeet; Wichterle, Hynek; Gifford, David K. (Public Library of Science, 2015-05)
    RNA Polymerase II ChIA-PET data has revealed enhancers that are active in a profiled cell type and the genes that the enhancers regulate through chromatin interactions. The most commonly used computational method for ...
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