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Browsing MIT Open Access Articles by Author "Chisholm, Sallie (Penny)"

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Browsing MIT Open Access Articles by Author "Chisholm, Sallie (Penny)"

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  • Chisholm, Sallie (Penny); Sullivan, Matthew B.; Birren, Bruce W.; Nusbaum, Chad; Young, Sarah K.; Giannoukos, Georgia; Saif, akina; Sparrow, Todd; Weiand, Michael; Zeng, Qiandong; Kodira, Chinnappa; Yandava, Chandri; Kelly, Libusha; Berlin, Aaron M.; Osburne, Marcia; Stange-Thomann, Nicole; Henn, Matthew R. (Public Library of Science, 2010-02)
    Background: Bacterial viruses (phages) play a critical role in shaping microbial populations as they influence both host mortality and horizontal gene transfer. As such, they have a significant impact on local and global ...
  • Biller, Steven; Schubotz, Florence; Roggensack, Sara; Thompson, Anne W.; Summons, Roger Everett; Chisholm, Sallie (Penny) (American Association for the Advancement of Science (AAAS), 2014-01)
    Many heterotrophic bacteria are known to release extracellular vesicles, facilitating interactions between cells and their environment from a distance. Vesicle production has not been described in photoautotrophs, however, ...
  • Li, Bo; Sher, Daniel; Kelly, Libusha; Shi, Yanxiang; Huang, Katherine; Knerr, Patrick J.; Joewono, Ike; Rusch, Doug; Chisholm, Sallie (Penny); van der Donk, Wilfred A. (National Academy of Sciences (U.S.), 2010-05)
    Our understanding of secondary metabolite production in bacteria has been shaped primarily by studies of attached varieties such as symbionts, pathogens, and soil bacteria. Here we show that a strain of the single-celled, ...
  • Zinser, Erik R.; Lindell, Debbie; Johnson, Zackary I.; Futschik, Matthias E.; Steglich, Claudia; Coleman, Maureen L.; Wright, Matthew A.; Rector, Trent; Steen, Robert; McNulty, Nathan; Thompson, Luke Richard; Chisholm, Sallie (Penny) (Public Library of Science, 2009-04)
    The marine cyanobacterium Prochlorococcus MED4 has the smallest genome and cell size of all known photosynthetic organisms. Like all phototrophs at temperate latitudes, it experiences predictable daily variation in available ...
  • Becker, Jamie William; Berube, Paul M.; Follett, Christopher L.; Waterbury, John B.; Chisholm, Sallie (Penny); DeLong, Edward; Repeta, Daniel J. (Frontiers Research Foundation, 2014-03)
    Production of dissolved organic matter (DOM) by marine phytoplankton supplies the majority of organic substrate consumed by heterotrophic bacterioplankton in the sea. This production and subsequent consumption converts a ...
  • Coleman, Maureen L.; Chisholm, Sallie (Penny) (National Academy of Sciences (U.S.), 2010-10)
    Bacterial populations harbor vast genetic diversity that is continually shaped by abiotic and biotic selective pressures, as well as by neutral processes. Individuals coexisting in the same geographically defined population ...
  • Sullivan, Matthew B.; Krastins, Bryan; Hughes, Jennifer L.; Hughes, Jennifer L.; Kelly, Libusha; Chase, Michael; Sarracino, David; Chisholm, Sallie (Penny) (2009-10)
    Prochlorococcus, an abundant phototroph in the oceans, are infected by members of three families of viruses: myo-, podo- and siphoviruses. Genomes of myo- and podoviruses isolated on Prochlorococcus contain DNA replication ...
  • Sullivan, Matthew B.; Huang, Katherine H.; Ignacio-Espinoza, Julio C.; Berlin, Aaron M.; Kelly, Libusha; Weigele, Peter; DeFrancesco, Alicia S.; Kern, Suzanne Elizabeth; Thompson, Luke Richard; Young, Sarah; Yandava, Chandri; Fu, Ross; Krastins, Bryan; Chase, Michael; Sarracino, David; Osburne, Marcia; Henn, Matthew R.; Chisholm, Sallie (Penny) (Society for Applied Microbiology and Blackwell Publishing Ltd, 2010-11)
    T4-like myoviruses are ubiquitous, and their genes are among the most abundant documented in ocean systems. Here we compare 26 T4-like genomes, including 10 from non-cyanobacterial myoviruses, and 16 from marine ...
  • Klein, Michael G.; Zwart, Peter; Bagby, Sarah C.; Cai, Fei; Chisholm, Sallie (Penny); Heinhorst, Sabine; Cannon, Gordon C.; Kerfeld, Cheryl A. (Elsevier, 2009-09)
    Bacterial microcompartments (BMCs) are polyhedral bodies, composed entirely of proteins, that function as organelles in bacteria; they promote subcellular processes by encapsulating and co-localizing targeted enzymes with ...
  • Zeng, Qinglu; Chisholm, Sallie (Penny) (Elsevier, 2012-01)
    Phosphorus (P) availability, which often limits productivity in marine ecosystems, shapes the P-acquisition gene content of the marine cyanobacteria Prochlorococcus [ [1], [2], [3] and [4]] and its viruses (cyanophages) [ ...
  • McCarren, Jay; Becker, Jamie William; Repeta, Daniel J.; Shi, Yanmei; Young, Curtis Robert, III; Malmstrom, Rex R.; Chisholm, Sallie (Penny); DeLong, Edward (National Academy of Sciences, 2010-08)
    Marine dissolved organic matter (DOM) contains as much carbon as the Earth's atmosphere, and represents a critical component of the global carbon cycle. To better define microbial processes and activities associated with ...
  • Chisholm, Sallie (Penny); Follows, Michael J.; Jahn, Oliver; Dutkiewicz, Stephanie; Bragg, Jason G. (Public Library of Science, 2010-03)
    Our view of marine microbes is transforming, as culture-independent methods facilitate rapid characterization of microbial diversity. It is difficult to assimilate this information into our understanding of marine microbe ...
  • Chisholm, Sallie (Penny); Bragg, Jason G. (Public Library of Science, 2008-10)
    Background: Phages infecting marine picocyanobacteria often carry a psbA gene, which encodes a homolog to the photosynthetic reaction center protein, D1. Host encoded D1 decays during phage infection in the light. Phage ...
  • Thompson, Luke Richard; Zeng, Qinglu; Kelly, Libusha; Huang, Katherine H.; Singer, Alexander U.; Stubbe, JoAnne; Chisholm, Sallie (Penny) (National Academy of Sciences (U.S.), 2011-09)
    Cyanophages infecting the marine cyanobacteria Prochlorococcus and Synechococcus encode and express genes for the photosynthetic light reactions. Sequenced cyanophage genomes lack Calvin cycle genes, however, suggesting ...
  • Kelly, Libusha; Huang, Katherine H.; Ding, Huiming; Chisholm, Sallie (Penny) (Oxford University Press, 2011-11)
    ProPortal (http://proportal.mit.edu/) is a database containing genomic, metagenomic, transcriptomic and field data for the marine cyanobacterium Prochlorococcus. Our goal is to provide a source of cross-referenced data ...
  • Duce, Robert; Chisholm, Sallie (Penny); Kinder, Thomas; Liss, Peter; Moore, Ted; Moore, Ted (The Oceanography Society, 1996)
    EVERY THREE YEARS a Committee of Visitors is formed by the National Science Foundation (NSF) Advisory Committee on Geosciences to review the various aspects of NSF funding in the Directorate for Geosciences. This year ...
  • Sher, Daniel; Thompson, Jessie W.; Kashtan, Nadav; Croal, Laura; Chisholm, Sallie (Penny) (Nature Publishing Group, 2011-02)
    Interactions between microorganisms shape microbial ecosystems. Systematic studies of mixed microbes in co-culture have revealed widespread potential for growth inhibition among marine heterotrophic bacteria, but similar ...
  • Coleman, Maureen L.; Chisholm, Sallie (Penny) (National Academy of Sciences, 2011-04)
    Luo and Konstantinidis (1) assert that there is no difference in phosphorus (P)-related gene content between surface Prochlorococcus populations in the North Atlantic [Bermuda Atlantic Time Series (BATS)] and North Pacific ...
  • Steglich, Claudia; Lindell, Debbie; Futschik, Matthias; Rector, Trent; Steen, Robert; Chisholm, Sallie (Penny) (BioMed Central Ltd, 2010-05)
    Background: RNA turnover plays an important role in the gene regulation of microorganisms and influences their speed of acclimation to environmental changes. We investigated whole-genome RNA stability of Prochlorococcus, ...
  • Steglich, Claudia; Lindell, Debbie; Futschik, Matthias; Rector, Trent; Steen, Robert; Chisholm, Sallie (Penny) (BioMed Central Ltd, 2010-05)
    Background RNA turnover plays an important role in the gene regulation of microorganisms and influences their speed of acclimation to environmental changes. We investigated whole-genome RNA stability of Prochlorococcus, a ...
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