Transcript ID Gene ID Gene Name Species Assembly Annotation Set RT intervals Strand RT length (codons) Stop Context Aligned Stops Is Preliminary Double RT 3rd ORF Length (codons) Triple RT 4th ORF length (codons) Double-Stop RNAz Structure OrthoDB ID Orthologous Gene ID Orthologous Gene Name Orthologous Transcript Other Is RT Unpaired RT Ortholog Stop Orthologous Ancient or Comparison Unbiased By Stop Found By Homology Jungreis 2011 Transcript CodAlignView Other CodAlignView AGAP000018-RA AGAP000018 A. gambiae AgamP4 AgamP4.2 chrX:251811-251849 + 13 TGA-C TGA EOG7SJQMH FBgn0015279 Pi3K92E-RC FBtr0334643 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:251811-251849&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000018-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:16455274-16455468&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0334643 AGAP000019-RA AGAP000019 A. gambiae AgamP4 AgamP4.2 chrX:288874-289038 + 55 TGA-C TGA Preliminary EOG771CQ2 FBgn0000313 chp-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:288874-289038&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000019-RA AGAP000038-RA AGAP000038 A. gambiae AgamP4 AgamP4.2 chrX:481577-481591 - 5 TGA-C TGA RNA Structure EOG77HQX3 FBgn0010240 Lcch3-RC FBtr0074129 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:481577-481591&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000038-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:15822441-15822458&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074129 AGAP000045-RA AGAP000045 A. gambiae AgamP4 AgamP4.2 chrX:735719-736168 + 150 TGA-C TGA Preliminary Double 15 EOG7X9SQ6 FBgn0024944 Oamb-RC FBtr0083934 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:735719-736213&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000045-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:16515586-16515903&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083934 AGAP000045-RB AGAP000045 A. gambiae AgamP4 AgamP4.2 chrX:727796-728263 + 156 TGA-C TGA EOG7X9SQ6 FBgn0024944 Oamb-RB FBtr0083933 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:727796-728263&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000045-RB http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:16518534-16518668&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083933 AGAP000058-RA AGAP000058 A. gambiae AgamP4 AgamP4.2 chrX:932546-932590 - 15 TAG-G TAG Preliminary EOG7XT4WM FBgn0004607 zfh2-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:932546-932590&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000058-RA AGAP000063-RA AGAP000063 A. gambiae AgamP4 AgamP4.2 chrX:980032-980088 - 19 TAA-T TAA EOG7HJ78Z No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:980032-980088&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000063-RA AGAP000070-RA AGAP000070 A. gambiae AgamP4 AgamP4.2 chrX:1099833-1100126 - 98 TGA-C TGA Preliminary EOG706B6Z FBgn0038603 PKD-RF FBtr0330312 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:1099833-1100126&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000070-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14129378-14129587&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330312 AGAP000078-RA AGAP000078 A. gambiae AgamP4 AgamP4.2 chrX:1264682-1264726 - 15 TGA-C TGA EOG7DRVKS FBgn0051122 CG31122-RC FBtr0333831 RT No No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:1264682-1264726&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000078-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14233187-14233603&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333831 AGAP000080-RA AGAP000080 A. gambiae AgamP4 AgamP4.2 chrX:1308428-1308484 - 19 TGA-T TGA Preliminary EOG7VF865 FBgn0004652 fru-RF FBtr0083644 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:1308428-1308484&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000080-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14242283-14242498&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083644 AGAP000080-RB AGAP000080 A. gambiae AgamP4 AgamP4.2 chrX:1298873-1300108 - 412 TGA-T TGA EOG7VF865 FBgn0004652 fru-RH FBtr0083640 RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:1298873-1300108&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000080-RB http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14247799-14248359&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083640 AGAP000123-RA AGAP000123 A. gambiae AgamP4 AgamP4.2 chrX:2014166-2014255 + 30 TGA-C TGA EOG7HXQ6W FBgn0030617 CG9095-RA FBtr0074026 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:2014166-2014255&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000123-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:15035283-15035321&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074026 AGAP000185-RA AGAP000185 A. gambiae AgamP4 AgamP4.2 chrX:3032207-3032329 - 41 TGA-C TGA Preliminary EOG7XQ8P1 FBgn0026086 Adar-RN FBtr0339272 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:3032207-3032329&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000185-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:1677788-1678039&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0339272 AGAP000190-RA AGAP000190 A. gambiae AgamP4 AgamP4.2 chrX:3158052-3158675 + 208 TGA-A TGA RNA Structure EOG7XT4X9 FBgn0020912 Ptx1-RA FBtr0089389 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:3158052-3158675&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000190-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:26755460-26755762&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0089389 AGAP000250-RA AGAP000250 A. gambiae AgamP4 AgamP4.2 chrX:4599585-4599626 + 14 TAG-C TAG Preliminary EOG7M1089 FBgn0030874 CG6506-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:4599585-4599626&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000250-RA AGAP000314-RA AGAP000314 A. gambiae AgamP4 AgamP4.2 chrX:5511709-5514036 - 776 TGA-C TGA EOG796HZK FBgn0085430 CG34401-RB FBtr0333160 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:5511709-5514097+chrX:5514160-5514188&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000314-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:18772003-18772025+chrX:18772088-18772958&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333160 AGAP000351-RB AGAP000351 A. gambiae AgamP4 AgamP4.2 chrX:6188277-6188297 - 7 TGA-T TGA EOG72GBQS FBgn0004842 RYa-R-RA FBtr0085100 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:6188277-6188330+chrX:6189927-6189983&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000351-RB http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:22883146-22883196+chr3R:22883374-22883487&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085100 AGAP000430-RA AGAP000430 A. gambiae AgamP4 AgamP4.2 chrX:7646480-7646485 - 2 TGA-T TGA EOG7W1GM4 FBgn0261086 Syt14-RA FBtr0078957 RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:7646480-7646485&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000430-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:141659-141844&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0078957 AGAP000446-RA AGAP000446 A. gambiae AgamP4 AgamP4.2 chrX:7843486-7843671 + 62 TAG-T TAG EOG76XHG6 FBgn0039862 kek6-RA FBtr0085821 RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:7843486-7843671&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000446-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:27487332-27487352&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085821 AGAP000456-RA AGAP000456 A. gambiae AgamP4 AgamP4.2 chrX:7926878-7926913 + 12 TAG-G TAG EOG70GXZS FBgn0266409 CG45049-RD FBtr0344358 Ambiguous No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:7926878-7926913&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000456-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:18555830-18555865&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0344358 AGAP000457-RA AGAP000457 A. gambiae AgamP4 AgamP4.2 chrX:7930983-7931087 - 35 TGA-T TGA EOG72P378 FBgn0086768 Pcmt-RA FBtr0078758 Ambiguous No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:7930983-7931087&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000457-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:1378609-1378767+chr3R:1378993-1378998&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0078758 AGAP000502-RA AGAP000502 A. gambiae AgamP4 AgamP4.2 chrX:8847274-8847777 + 168 TAG-C TAG EOG7747Z5 FBgn0259099 DCX-EMAP-RC FBtr0299509 RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:8847274-8847777&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000502-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:14935279-14935404&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0299509 AGAP000532-RA AGAP000532 A. gambiae AgamP4 AgamP4.2 chrX:9504470-9504553 + 28 TGA-T TGA Preliminary EOG7MM6P2 FBgn0026428 HDAC6-RA FBtr0074008 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:9504470-9504553&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000532-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:15234049-15234201&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074008 AGAP000606-RA AGAP000606 A. gambiae AgamP4 AgamP4.2 chrX:11101429-11101548 + 40 TGA-T TGA EOG74JMR4 FBgn0038653 CG18208-RA FBtr0083677 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:11101429-11101548&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000606-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14631750-14631872&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083677 AGAP000672-RA AGAP000672 A. gambiae AgamP4 AgamP4.2 chrX:11856370-11856459 - 30 TGA-T TGA Preliminary EOG735FDD FBgn0030151 CG1354-RE FBtr0336922 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:11856370-11856459&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000672-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:9675762-9675851&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0336922 AGAP000758-RA AGAP000758 A. gambiae AgamP4 AgamP4.2 chrX:13768303-13768359 - 19 TGA-C TGA Preliminary EOG7V1S7G FBgn0086362 spn-F-RA FBtr0085760 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:13768303-13768359&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000758-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:27082128-27082163&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085760 AGAP000779-RA AGAP000779 A. gambiae AgamP4 AgamP4.2 chrX:13969188-13969856 - 223 TAA-G TAA EOG7P64GX FBgn0004606 zfh1-RB FBtr0085701 RT No Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:13969188-13969856&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000779-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:26611926-26612381&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085701 AGAP000801-RA AGAP000801 A. gambiae AgamP4 AgamP4.2 chrX:14618183-14618284 - 34 TAG-G TAG Preliminary EOG7SJQMM FBgn0026255 clumsy-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:14618183-14618284&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000801-RA AGAP000874-RA AGAP000874 A. gambiae AgamP4 AgamP4.2 chrX:16435202-16435219 + 6 TGA-A TGA Preliminary EOG7BCZTX FBgn0263772 CG43689-RF No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:16435202-16435219&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000874-RA AGAP000932-RA AGAP000932 A. gambiae AgamP4 AgamP4.2 chrX:17601897-17602019 - 41 TAG-T TAG EOG7VQVW5 FBgn0259228 C3G-RL FBtr0340087 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:17601897-17602019&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000932-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:6676321-6676386&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0340087 AGAP000962-RA AGAP000962 A. gambiae AgamP4 AgamP4.2 chrX:18426303-18426677 - 125 TAA-C TAA EOG78T214 FBgn0028875 nAChRalpha5-RH FBtr0309867 RT Unpaired RT Yes Ancient http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:18426303-18426677&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000962-RA AGAP001175-RA AGAP001175 A. gambiae AgamP4 AgamP4.2 chr2R:722285-722368 + 28 TGA-C TGA Preliminary EOG7WDZK5 FBgn0030437 hec-RB FBtr0343652 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:722285-722368&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001175-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:12845310-12845336&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343652 AGAP001225-RA AGAP001225 A. gambiae AgamP4 AgamP4.2 chr2R:1642915-1642947 - 11 TGA-T TGA Preliminary EOG7HQZR8 No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:1642915-1642947&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001225-RA AGAP001232-RA AGAP001232 A. gambiae AgamP4 AgamP4.2 chr2R:1747346-1747453 + 36 TAG-C TAG Preliminary EOG7G51XN FBgn0035401 CG1291-RA FBtr0073023 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:1747346-1747453&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001232-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:3145267-3145278&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073023 AGAP001255-RA AGAP001255 A. gambiae AgamP4 AgamP4.2 chr2R:2052545-2052607 + 21 TAG-A TAG Preliminary EOG7GZ0TJ FBgn0027375 RecQ5-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:2052366-2052372+chr2R:2052462-2052607&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001255-RA AGAP001310-RA AGAP001310 A. gambiae AgamP4 AgamP4.2 chr2R:2840583-2840855 - 91 TGA-T TGA Preliminary EOG718WVX FBgn0036336 ste14-RB FBtr0332075 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:2840583-2840855&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001310-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:13012576-13012584&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332075 AGAP001328-RA AGAP001328 A. gambiae AgamP4 AgamP4.2 chr2R:3049091-3049711 + 207 TAA-C TAA EOG7TV1QT FBgn0023097 bon-RA FBtr0083912 RT No Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:3049091-3049711&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001328-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:16436559-16436780&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083912 AGAP001337-RA AGAP001337 A. gambiae AgamP4 AgamP4.2 chr2R:3311393-3311416 + 8 TGA-C TGA Preliminary Double 9 EOG7161MK FBgn0023524 CG3078-RB FBtr0340208 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:3311393-3311443&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001337-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:2149755-2149772&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0340208 AGAP001367-RA AGAP001367 A. gambiae AgamP4 AgamP4.2 chr2R:3631556-3631645 + 30 TAG-A TAG Preliminary EOG7TR5HQ FBgn0036144 GlcAT-P-RE FBtr0306255 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:3631556-3631645&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001367-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:11171503-11171517&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0306255 AGAP001413-RA AGAP001413 A. gambiae AgamP4 AgamP4.2 chr2R:4558488-4558523 + 12 TAG-C TAG RNA Structure EOG71GNCQ No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:4558488-4558523&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001413-RA AGAP001444-RA AGAP001444 A. gambiae AgamP4 AgamP4.2 chr2R:5100498-5100983 + 162 TGA-T TGA EOG7GJHW8 FBgn0038755 Hs6st-RA FBtr0083846 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:5100498-5100983&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001444-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:15756086-15756118&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083846 AGAP001535-RA AGAP001535 A. gambiae AgamP4 AgamP4.2 chr2R:5955494-5955550 + 19 TGA-G TGA Preliminary EOG7P64GT FBgn0005386 ash1-RC FBtr0306010 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:5955494-5955550&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001535-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:19584393-19584401&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0306010 AGAP001536-RA AGAP001536 A. gambiae AgamP4 AgamP4.2 chr2R:6034372-6034392 + 7 TGA-C TGA EOG7DK440 FBgn0028550 Atf3-RA FBtr0070244 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:6034372-6034392&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001536-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:1140323-1140547&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0070244 AGAP001564-RA AGAP001564 A. gambiae AgamP4 AgamP4.2 chr2R:6286883-6286885 - 1 TGA-T TGA Double 17 Double-Stop EOG764JK2 FBgn0030049 Trf4-1-RC FBtr0071212 Ambiguous No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:6286832-6286885&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001564-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:8460972-8460977&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071212 AGAP001592-RA AGAP001592 A. gambiae AgamP4 AgamP4.2 chr2R:6527222-6527323 - 34 TAG-C TAG Preliminary EOG7NWHT2 FBgn0004622 TkR99D-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:6527222-6527323&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001592-RA AGAP001606-RA AGAP001606 A. gambiae AgamP4 AgamP4.2 chr2R:6687806-6687889 + 28 TGA-T TGA Preliminary EOG7NPS97 FBgn0034733 CG4752-RA FBtr0071832 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:6687806-6687889&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001606-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:18370502-18370513&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071832 AGAP001671-RA AGAP001671 A. gambiae AgamP4 AgamP4.2 chr2R:7740963-7740983 - 7 TGA-C TGA EOG7TR5HB FBgn0000659 fkh-RB FBtr0300259 RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:7740963-7740983&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001671-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:24408197-24408742&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0300259 AGAP001683-RA AGAP001683 A. gambiae AgamP4 AgamP4.2 chr2R:8247379-8247459 - 27 TGA-C TGA Preliminary EOG7BKQ9M FBgn0013759 CASK-RB FBtr0084161 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:8247379-8247459&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001683-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:17612312-17612404&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084161 AGAP001762-RA AGAP001762 A. gambiae AgamP4 AgamP4.2 chr2R:9493076-9493096 + 7 TAG-C TAG Preliminary EOG7FC30R FBgn0034110 Atg9-RA FBtr0087141 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:9493076-9493096&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001762-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:12184564-12184584&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087141 AGAP001773-RA AGAP001773 A. gambiae AgamP4 AgamP4.2 chr2R:9784181-9784219 - 13 TAA-C TAA Preliminary EOG7J4FQC FBgn0266429 AstA-R1-RB FBtr0070575 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:9784181-9784219&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001773-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:3558699-3558702+chrX:3558844-3558944&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0070575 AGAP001773-RB AGAP001773 A. gambiae AgamP4 AgamP4.2 chr2R:9856446-9856484 - 13 TAA-C TAA EOG7J4FQC FBgn0266429 AstA-R1-RB FBtr0070575 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:9856446-9856484&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001773-RB http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:3558699-3558702+chrX:3558844-3558944&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0070575 AGAP001773-RC AGAP001773 A. gambiae AgamP4 AgamP4.2 chr2R:9941060-9941098 - 13 TAA-C TAA Preliminary EOG7J4FQC FBgn0266429 AstA-R1-RB FBtr0070575 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:9941060-9941098&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001773-RC http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:3558699-3558702+chrX:3558844-3558944&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0070575 AGAP001774-RA AGAP001774 A. gambiae AgamP4 AgamP4.2 chr2R:10055589-10055627 + 13 TAA-C TAA Preliminary No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:10055589-10055627&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001774-RA AGAP001806-RA AGAP001806 A. gambiae AgamP4 AgamP4.2 chr2R:10784790-10784825 + 12 TGA-C TGA Preliminary Double 1 Triple 5 EOG7BWB1M FBgn0040397 CG3655-RA FBtr0070181 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:10784790-10784843&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001806-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:969437-969535&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0070181 AGAP001867-RA AGAP001867 A. gambiae AgamP4 AgamP4.2 chr2R:11698495-11698521 + 9 TGA-G TGA Preliminary Double 8 EOG7VF85G FBgn0010303 hep-RA FBtr0073747 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:11698495-11698545&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001867-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:12974435-12974461&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073747 AGAP001947-RA AGAP001947 A. gambiae AgamP4 AgamP4.2 chr2R:12726312-12727415 - 368 TGA-T TGA EOG74JMQV FBgn0027508 Tnks-RA FBtr0084890 Ambiguous No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:12726312-12727493+chr2R:12727572-12727583&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001947-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:21479237-21480331+chr3R:21480392-21480403&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084890 AGAP001961-RA AGAP001961 A. gambiae AgamP4 AgamP4.2 chr2R:12909643-12909768 + 42 TAG-C TAG Preliminary EOG7161MX No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:12909643-12909768&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001961-RA AGAP002000-RA AGAP002000 A. gambiae AgamP4 AgamP4.2 chr2R:13365915-13365917 - 1 TGA-T TGA Double 24 Double-Stop EOG79PW69 FBgn0039380 CG5890-RA FBtr0084908 RT Yes No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:13365843-13365917&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002000-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:21695389-21695457&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084908 AGAP002030-RA AGAP002030 A. gambiae AgamP4 AgamP4.2 chr2R:14096583-14096924 + 114 TAG-T TAA,TAG Preliminary EOG7D8HCG FBgn0011785 BRWD3-RA FBtr0084604 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:14096583-14096924&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002030-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:20153912-20153938&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084604 AGAP002115-RA AGAP002115 A. gambiae AgamP4 AgamP4.2 chr2R:15784352-15784369 - 6 TAG-G TAG RNA Structure EOG7TV1QR FBgn0265597 rad-RI No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:15784352-15784369&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002115-RA AGAP002132-RA AGAP002132 A. gambiae AgamP4 AgamP4.2 chr2R:16100373-16100378 - 2 TGA-C TGA EOG718WWK FBgn0026441 ear-RA FBtr0083082 RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:16100373-16100378&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002132-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:11150007-11150048&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083082 AGAP002233-RA AGAP002233 A. gambiae AgamP4 AgamP4.2 chr2R:17959130-17959162 + 11 TGA-G TGA Preliminary EOG7B67BW FBgn0085386 CG34357-RD FBtr0335239 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:17959130-17959162&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002233-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:319114-319125&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0335239 AGAP002257-RA AGAP002257 A. gambiae AgamP4 AgamP4.2 chr2R:18229185-18229187 - 1 TAG-T TAG Double 20 Double-Stop EOG71CS40 FBgn0037848 Tsp86D-RA FBtr0082288 RT Yes No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:18229125-18229187&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002257-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:6695688-6695762&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0082288 AGAP002296-RA AGAP002296 A. gambiae AgamP4 AgamP4.2 chr2R:18702388-18703200 - 271 TAA-C TAA EOG7K71BK FBgn0264307 orb2-RH FBtr0331515 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:18702388-18703200&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002296-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:8935976-8935990&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0331515 AGAP002344-RA AGAP002344 A. gambiae AgamP4 AgamP4.2 chr2R:20488300-20488338 - 13 TGA-T TGA Preliminary EOG7WQK8D FBgn0026206 mei-P26-RE FBtr0340341 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:20488300-20488338&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002344-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:9064849-9065211&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0340341 AGAP002366-RA AGAP002366 A. gambiae AgamP4 AgamP4.2 chr2R:20677673-20677708 + 12 TGA-A TGA EOG7K9WK5 FBgn0038641 CG7708-RB FBtr0083669 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:20677673-20677708&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002366-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14510385-14510393&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083669 AGAP002544-RA AGAP002544 A. gambiae AgamP4 AgamP4.2 chr2R:22660169-22660204 + 12 TGA-C TGA EOG7B67CC FBgn0003651 svp-RC FBtr0082562 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:22660169-22660204&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002544-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:8126724-8126756&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0082562 AGAP002566-RA AGAP002566 A. gambiae AgamP4 AgamP4.2 chr2R:22970562-22970567 + 2 TAG-C TAG Double 6 EOG7R5J8R FBgn0039419 CG12290-RB FBtr0339612 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:22970562-22970585&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002566-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:22058824-22058871&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0339612 AGAP002567-RA AGAP002567 A. gambiae AgamP4 AgamP4.2 chr2R:22996997-22997011 + 5 TAG-C TAG EOG7RRRQ4 FBgn0034491 Hsl-RC FBtr0086272 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:22996997-22997011&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002567-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:16148465-16148509&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086272 AGAP002578-RA AGAP002578 A. gambiae AgamP4 AgamP4.2 chr2R:23163838-23163894 - 19 TAG-C TAG Preliminary EOG7VXMBW FBgn0263111 cac-RP FBtr0332391 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:23163838-23163894&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002578-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:11830066-11830077&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332391 AGAP002591-RA AGAP002591 A. gambiae AgamP4 AgamP4.2 chr2R:23656657-23656725 + 23 TGA-G TGA Preliminary EOG79WMP8 FBgn0053207 pxb-RC FBtr0334025 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:23656657-23656725&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002591-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:11513659-11513667&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0334025 AGAP002610-RA AGAP002610 A. gambiae AgamP4 AgamP4.2 chr2R:24057081-24057143 + 21 TGA-C TGA Preliminary EOG7FZ9FS FBgn0029939 CG9650-RJ FBtr0339815 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:24057081-24057143&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002610-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:7133936-7134058&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0339815 AGAP002666-RA AGAP002666 A. gambiae AgamP4 AgamP4.2 chr2R:25260341-25260358 - 6 TGA-C TGA EOG7NKX39 No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:25260341-25260358&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002666-RA AGAP002671-RA AGAP002671 A. gambiae AgamP4 AgamP4.2 chr2R:25287525-25287599 + 25 TGA-T TGA Preliminary EOG7S57PG FBgn0053145 CG33145-RB FBtr0088048 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:25287525-25287599&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002671-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:7868756-7868764&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088048 AGAP002672-RA AGAP002672 A. gambiae AgamP4 AgamP4.2 chr2R:25293460-25293762 - 101 TAG-C TAG Preliminary EOG7TJF10 FBgn0039290 CG13654-RC FBtr0339257 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:25293460-25293762&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002672-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:21039372-21039437&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0339257 AGAP002702-RA AGAP002702 A. gambiae AgamP4 AgamP4.2 chr2R:25774788-25774826 + 13 TGA-C TGA Preliminary EOG7M9KZG No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:25774788-25774826&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002702-RA AGAP002709-RA AGAP002709 A. gambiae AgamP4 AgamP4.2 chr2R:26001206-26001232 - 9 TAG-C TAG Preliminary EOG7NWHSS FBgn0030017 CG2278-RA FBtr0071185 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:26001206-26001232&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002709-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:8061822-8061986&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071185 AGAP002719-RA AGAP002719 A. gambiae AgamP4 AgamP4.2 chr2R:26227734-26227784 + 17 TAG-C TAG EOG7SVBBB FBgn0000535 eag-RG FBtr0310016 Ambiguous No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:26227734-26227784&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002719-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:14899292-14899351&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0310016 AGAP002773-RA AGAP002773 A. gambiae AgamP4 AgamP4.2 chr2R:27016800-27017138 + 113 TAG-A TAG EOG7TBPJJ FBgn0003499 sr-RA FBtr0083542 RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:27016800-27017138&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002773-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:13958204-13958458&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083542 AGAP002793-RA AGAP002793 A. gambiae AgamP4 AgamP4.2 chr2R:27628493-27630691 + 733 TGA-C TGA Preliminary Double 30 EOG79SRD4 FBgn0264089 sli-RE FBtr0330733 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:27628311-27628313+chr2R:27628406-27630781&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002793-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:11758925-11760970+chr2R:11761040-11761042&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330733 AGAP002794-RA AGAP002794 A. gambiae AgamP4 AgamP4.2 chr2R:27630692-27630781 + 30 TAG-G TAG EOG7QVXK8 No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:27630692-27630781&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002794-RA AGAP002824-RA AGAP002824 A. gambiae AgamP4 AgamP4.2 chr2R:28036209-28036226 + 6 TGA-C TGA Preliminary EOG7R2P1Z FBgn0004841 TkR86C-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:28036209-28036226&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002824-RA AGAP002886-RA AGAP002886 A. gambiae AgamP4 AgamP4.2 chr2R:28811748-28811801 + 18 TAA-C TAA Preliminary EOG7VTR4J FBgn0038063 Octbeta2R-RA FBtr0100019 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:28811748-28811801&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002886-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:8378366-8378647&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0100019 AGAP002896-RA AGAP002896 A. gambiae AgamP4 AgamP4.2 chr2R:28997033-28997200 - 56 TAG-G TAG EOG7389N4 FBgn0261552 ps-RT FBtr0344284 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:28997033-28997200&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002896-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:5273572-5273601&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0344284 AGAP002913-RA AGAP002913 A. gambiae AgamP4 AgamP4.2 chr2R:29228405-29228611 - 69 TAG-C TAG Preliminary EOG7BCZV0 FBgn0051145 CG31145-RF FBtr0336459 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:29228405-29228611&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002913-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:19432567-19432572&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0336459 AGAP002924-RB AGAP002924 A. gambiae AgamP4 AgamP4.2 chr2R:29636881-29636898 - 6 TGA-G TGA EOG7VF85J FBgn0015558 tty-RG FBtr0333749 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:29636881-29636898&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002924-RB http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:21202972-21202986&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333749 AGAP002927-RA AGAP002927 A. gambiae AgamP4 AgamP4.2 chr2R:29692374-29692694 - 107 TGA-C TGA Preliminary EOG78T212 FBgn0259171 Pde9-RB FBtr0299635 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:29692374-29692694&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002927-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:12685497-12685787&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0299635 AGAP002942-RA AGAP002942 A. gambiae AgamP4 AgamP4.2 chr2R:29985541-29985558 + 6 TGA-T TGA EOG7SZ6KC FBgn0266411 sima-RB No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:29985541-29985558&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002942-RA AGAP002951-RA AGAP002951 A. gambiae AgamP4 AgamP4.2 chr2R:30068042-30068095 - 18 TAG-A TAG Preliminary RNA Structure EOG7RZH62 FBgn0030701 CG16952-RE FBtr0340041 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:30068042-30068095&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002951-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:15769445-15769495&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0340041 AGAP002974-RA AGAP002974 A. gambiae AgamP4 AgamP4.2 chr2R:30478829-30478909 + 27 TAG-C TAG RNA Structure EOG7V1S6T FBgn0000036 nAChRalpha1-RA FBtr0084619 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:30478829-30478909&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002974-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:20227371-20227460&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084619 AGAP002991-RA AGAP002991 A. gambiae AgamP4 AgamP4.2 chr2R:30637456-30637491 + 12 TGA-T TGA RNA Structure EOG7WQK95 FBgn0037647 RagA-B-RA FBtr0082013 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:30637456-30637491&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002991-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:4808832-4808834&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0082013 AGAP002993-RA AGAP002993 A. gambiae AgamP4 AgamP4.2 chr2R:30668705-30668926 - 74 TGA-C TGA RNA Structure EOG7K9WKB FBgn0037645 CG11966-RB FBtr0334329 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:30668705-30668926&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002993-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:4777767-4777793&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0334329 AGAP003059-RA AGAP003059 A. gambiae AgamP4 AgamP4.2 chr2R:31793043-31794464 + 474 TAA-C TAA,TAG EOG754V5R FBgn0010113 hdc-RA FBtr0085619 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:31793043-31794464&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003059-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:26186263-26187552&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085619 AGAP003114-RA AGAP003114 A. gambiae AgamP4 AgamP4.2 chr2R:32550719-32550721 + 1 TAA-T TAA Double 331 Double-Stop EOG7DZM2H FBgn0000711 flw-RA FBtr0071446 RT Yes No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:32550719-32551714&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003114-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:10301513-10301539&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071446 AGAP003140-RA AGAP003140 A. gambiae AgamP4 AgamP4.2 chr2R:33179679-33179864 + 62 TAG-T TAG Preliminary EOG77B0DR FBgn0015269 Nf1-RB FBtr0084952 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:33179679-33179864&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003140-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:21819509-21819523&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084952 AGAP003201-RA AGAP003201 A. gambiae AgamP4 AgamP4.2 chr2R:33788769-33788816 - 16 TAG-C TAG Preliminary EOG76B91K FBgn0031030 Tao-RI FBtr0336691 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:33788769-33788816&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003201-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:19465467-19465613&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0336691 AGAP003202-RA AGAP003202 A. gambiae AgamP4 AgamP4.2 chr2R:33806716-33806763 - 16 TAG-C TAG Preliminary EOG76B91K FBgn0031030 Tao-RI FBtr0336691 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:33806716-33806763&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003202-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:19465467-19465613&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0336691 AGAP003312-RA AGAP003312 A. gambiae AgamP4 AgamP4.2 chr2R:35775171-35775458 - 96 TAG-T TAG Preliminary EOG7XDNXV FBgn0020647 KrT95D-RF FBtr0339250 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:35775171-35775458&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003312-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:19824351-19824359&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0339250 AGAP003318-RA AGAP003318 A. gambiae AgamP4 AgamP4.2 chr2R:35928047-35928355 + 103 TAG-G TAG EOG7WB3B2 FBgn0004575 Syn-RA FBtr0089477 RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:35928047-35928355&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003318-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:6043447-6044413+chr3R:6045501-6045865&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0089477 AGAP003349-RB AGAP003349 A. gambiae AgamP4 AgamP4.2 chr2R:36361975-36362133 - 53 TGA-G TGA EOG7R2P1P FBgn0263257 Cngl-RJ FBtr0345072 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:36361975-36362133&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003349-RB http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:15283645-15283653&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0345072 AGAP003428-RA AGAP003428 A. gambiae AgamP4 AgamP4.2 chr2R:37671309-37672910 + 534 TGA-A TGA EOG70WDWP FBgn0264493 rdx-RF FBtr0334298 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:37671309-37672910&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003428-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:9794512-9794907&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0334298 AGAP003457-RA AGAP003457 A. gambiae AgamP4 AgamP4.2 chr2R:37886773-37886802 - 10 TGA-T TGA EOG74BW85 FBgn0027287 Gmap-RC FBtr0343525 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:37886773-37886802&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003457-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:15404435-15404443&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343525 AGAP003479-RA AGAP003479 A. gambiae AgamP4 AgamP4.2 chr2R:38407148-38407168 + 7 TGA-C TGA Preliminary EOG7GFNN5 FBgn0262869 Gfrl-RE FBtr0306199 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:38407148-38407168&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003479-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:16207021-16207035&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0306199 AGAP003572-RA AGAP003572 A. gambiae AgamP4 AgamP4.2 chr2R:39982953-39983264 + 104 TGA-C TGA Preliminary Double 47 EOG7BKQB5 FBgn0259821 CG42402-RE FBtr0339974 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:39982953-39983405&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003572-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3RHet:2446598-2446729&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0339974 AGAP003593-RA AGAP003593 A. gambiae AgamP4 AgamP4.2 chr2R:40372811-40372840 - 10 TAG-C TAG Preliminary EOG751ZZ0 FBgn0038306 Art3-RB FBtr0083135 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:40372811-40372840&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003593-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:11053358-11053372&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083135 AGAP003614-RA AGAP003614 A. gambiae AgamP4 AgamP4.2 chr2R:40515332-40515337 - 2 TGA-C TGA EOG700KSH FBgn0034059 CG8320-RA FBtr0087202 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:40515332-40515337&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003614-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:11880918-11880965&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087202 AGAP003631-RA AGAP003631 A. gambiae AgamP4 AgamP4.2 chr2R:40725832-40725963 - 44 TGA-A TGA Preliminary EOG7Q5TWK FBgn0033058 CCHa2-R-RB FBtr0301687 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:40725832-40725963&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003631-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:1955220-1955291&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301687 AGAP003651-RA AGAP003651 A. gambiae AgamP4 AgamP4.2 chr2R:41005365-41005520 - 52 TGA-C TGA Preliminary EOG7BCZTQ FBgn0000723 FER-RF FBtr0333296 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:41005365-41005520&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003651-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:5193903-5193962&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333296 AGAP003658-RA AGAP003658 A. gambiae AgamP4 AgamP4.2 chr2R:41282916-41282984 + 23 TGA-G TGA Preliminary EOG7J4FQC FBgn0266429 AstA-R1-RB FBtr0070575 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:41282916-41282984&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003658-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:3558699-3558702+chrX:3558844-3558944&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0070575 AGAP003709-RA AGAP003709 A. gambiae AgamP4 AgamP4.2 chr2R:42280985-42281032 + 16 TGA-C TGA Double 39 EOG7GR8BQ FBgn0003429 slo-RB FBtr0084683 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:42280985-42281149&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003709-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:20533133-20533180&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084683 AGAP003797-RA AGAP003797 A. gambiae AgamP4 AgamP4.2 chr2R:43418854-43418913 + 20 TGA-C TGA Preliminary EOG7PPGQT FBgn0037766 Teh1-RA FBtr0082151 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:43409691-43409710+chr2R:43418784-43418913&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003797-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:5654388-5654517+chr3R:5690691-5690710&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0082151 AGAP003798-RA AGAP003798 A. gambiae AgamP4 AgamP4.2 chr2R:43442832-43442879 - 16 TAG-G TAG RNA Structure EOG7J4FQH FBgn0038401 CG5916-RB FBtr0344009 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:43442832-43442879&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003798-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:11974489-11974515&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0344009 AGAP003814-RA AGAP003814 A. gambiae AgamP4 AgamP4.2 chr2R:43727759-43727785 + 9 TGA-C TGA Preliminary EOG7FRK09 FBgn0032394 CG6746-RA FBtr0080313 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:43727759-43727785&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003814-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:12001285-12001413&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0080313 AGAP003821-RA AGAP003821 A. gambiae AgamP4 AgamP4.2 chr2R:43768864-43768902 + 13 TGA-G TGA Preliminary EOG7M107D FBgn0033916 CG8494-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:43768864-43768902&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003821-RA AGAP003849-RA AGAP003849 A. gambiae AgamP4 AgamP4.2 chr2R:44403224-44403226 - 1 TAG-C TAG Preliminary EOG7DK443 FBgn0266801 CG45263-RE FBtr0345460 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:44403149-44403226&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003849-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:4210631-4210765&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0345460 AGAP003892-RA AGAP003892 A. gambiae AgamP4 AgamP4.2 chr2R:45624525-45624569 + 15 TAG-G TAG Preliminary RNA Structure EOG7JHXNZ FBgn0263916 Ent2-RB FBtr0343158 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:45624525-45624569&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003892-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:6564074-6564088&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343158 AGAP003997-RA AGAP003997 A. gambiae AgamP4 AgamP4.2 chr2R:47730437-47730625 + 63 TGA-C TGA Preliminary EOG7RZH6C FBgn0250823 gish-RD FBtr0083261 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:47729074-47729111+chr2R:47730385-47730625&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003997-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:12127036-12127073+chr3R:12127545-12127803&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083261 AGAP004106-RA AGAP004106 A. gambiae AgamP4 AgamP4.2 chr2R:49935653-49935787 + 45 TAG-C TAG Preliminary EOG7FRJZK FBgn0051163 SKIP-RB FBtr0084197 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:49935653-49935787&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004106-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:18119624-18120007&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084197 AGAP004119-RA AGAP004119 A. gambiae AgamP4 AgamP4.2 chr2R:50309018-50309095 + 26 TGA-C TGA Preliminary EOG7K9WJX FBgn0038237 Pde6-RB FBtr0300330 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:50309018-50309095&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004119-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:10341335-10341352&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0300330 AGAP004120-RA AGAP004120 A. gambiae AgamP4 AgamP4.2 chr2R:50320359-50320397 - 13 TGA-C TGA Preliminary EOG7RK18M FBgn0039427 CG5447-RA FBtr0085012 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:50320359-50320397&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004120-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:22279432-22279470&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085012 AGAP004143-RA AGAP004143 A. gambiae AgamP4 AgamP4.2 chr2R:50706905-50706916 - 4 TGA-G TGA EOG7G51X3 FBgn0039466 CG5521-RB FBtr0301134 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:50706905-50706916&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004143-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:22802268-22802372&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301134 AGAP004178-RA AGAP004178 A. gambiae AgamP4 AgamP4.2 chr2R:51246246-51246269 + 8 TGA-G TGA Preliminary EOG7MDG77 FBgn0265276 l(3)neo38-RA FBtr0082533 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:51246246-51246269&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004178-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:7594538-7594561&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0082533 AGAP004229-RA AGAP004229 A. gambiae AgamP4 AgamP4.2 chr2R:52465842-52465895 + 18 TGA-C TGA EOG7TJF0R FBgn0000247 ca-RC FBtr0346613 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:52465842-52465895&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004229-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:25640154-25640231&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0346613 AGAP004270-RA AGAP004270 A. gambiae AgamP4 AgamP4.2 chr2R:53509137-53509169 - 11 TAG-C TAG Preliminary EOG7TN982 FBgn0028499 CG7985-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:53509137-53509169&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004270-RA AGAP004273-RC AGAP004273 A. gambiae AgamP4 AgamP4.2 chr2R:53538235-53538291 - 19 TAA-A TAA EOG757QF5 FBgn0013334 Sap47-RG FBtr0083210 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:53538235-53538291&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004273-RC http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:11785275-11785322&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083210 AGAP004311-RA AGAP004311 A. gambiae AgamP4 AgamP4.2 chr2R:54375941-54376051 + 37 TGA-C TGA Preliminary EOG703G0M FBgn0261285 Ppcs-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:54375941-54376051&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004311-RA AGAP004331-RA AGAP004331 A. gambiae AgamP4 AgamP4.2 chr2R:54678854-54679381 + 176 TGA-C TGA Preliminary EOG7KMH9Q FBgn0004618 gl-RA FBtr0083584 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:54678639-54678655+chr2R:54678781-54679381&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004331-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14194299-14194523&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083584 AGAP004401-RA AGAP004401 A. gambiae AgamP4 AgamP4.2 chr2R:55677241-55677363 - 41 TAA-C TAA Preliminary EOG7R8DJ9 No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:55677241-55677363&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004401-RA AGAP004403-RA AGAP004403 A. gambiae AgamP4 AgamP4.2 chr2R:55712143-55712274 - 44 TAA-C TAA Preliminary EOG703FZW FBgn0039157 Myo95E-RJ FBtr0310445 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:55712143-55712274&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004403-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:19981669-19981737&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0310445 AGAP004434-RA AGAP004434 A. gambiae AgamP4 AgamP4.2 chr2R:55991372-55991863 - 164 TGA-T TGA EOG7WMQ1H FBgn0020388 Gcn5-RA FBtr0075969 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:55991372-55991930+chr2R:55992040-55992062&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004434-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:12514404-12514445&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075969 AGAP004453-RA AGAP004453 A. gambiae AgamP4 AgamP4.2 chr2R:56483560-56483697 - 46 TGA-G TGA Preliminary Double 86 EOG7DZM25 FBgn0053517 Dop2R-RJ FBtr0343171 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:56483302-56483697&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004453-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:19900752-19901051&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343171 AGAP004494-RA AGAP004494 A. gambiae AgamP4 AgamP4.2 chr2R:57042215-57042265 + 17 TAG-G TAG EOG7WDZJW No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:57042215-57042265&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004494-RA AGAP004504-RA AGAP004504 A. gambiae AgamP4 AgamP4.2 chr2R:57149060-57149104 + 15 TGA-T TGA EOG7VTR4G FBgn0261279 lqfR-RC FBtr0299515 Ambiguous No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:57149060-57149104&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004504-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:18244301-18244315&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0299515 AGAP004522-RA AGAP004522 A. gambiae AgamP4 AgamP4.2 chr2R:57348661-57348729 + 23 TGA-C TGA Preliminary EOG77B0F9 FBgn0038855 CG5745-RA FBtr0084008 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:57348661-57348729&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004522-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:16930739-16930774&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084008 AGAP004613-RA AGAP004613 A. gambiae AgamP4 AgamP4.2 chr2R:58410911-58410919 - 3 TGA-C TGA EOG7FVF6Q FBgn0011582 Dop1R1-RB FBtr0290283 RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:58410911-58410919&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004613-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:10003450-10003641&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0290283 AGAP004659-RA AGAP004659 A. gambiae AgamP4 AgamP4.2 chr2R:59732409-59732438 - 10 TAG-G TAG Double 47 EOG7CGJH7 FBgn0003339 Scr-RB FBtr0081658 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:59732268-59732438&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004659-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:2651074-2651103&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081658 AGAP004664-RA AGAP004664 A. gambiae AgamP4 AgamP4.2 chr2R:60410736-60411038 - 101 TGA-C TGA EOG7161NQ FBgn0000015 Abd-B-RC FBtr0083381 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:60410736-60411038&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004664-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:12754952-12755110&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083381 AGAP004707-RA AGAP004707 A. gambiae AgamP4 AgamP4.2 chr2L:2431618-2431671 + 18 TGA-G TGA EOG79SRD3 FBgn0264255 para-RA FBtr0074298 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:2431618-2431671&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004707-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:16357779-16357820&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074298 AGAP004767-RA AGAP004767 A. gambiae AgamP4 AgamP4.2 chr2L:3193876-3194034 - 53 TGA-T TGA EOG73RNTP FBgn0011236 ken-RA FBtr0072129 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:3193876-3194034&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004767-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:19764301-19764375&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072129 AGAP004823-RA AGAP004823 A. gambiae AgamP4 AgamP4.2 chr2L:3915084-3915260 - 59 TGA-C TGA EOG725R1F FBgn0014388 sty-RB FBtr0073146 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:3915084-3915260&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004823-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:3402842-3402955&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073146 AGAP004953-RA AGAP004953 A. gambiae AgamP4 AgamP4.2 chr2L:7174676-7174729 - 18 TGA-T TGA EOG7C32HP FBgn0027057 CSN1b-RA FBtr0075074 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:7174676-7174816+chr2L:7174888-7174890&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004953-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:18896212-18896244&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075074 AGAP004982-RA AGAP004982 A. gambiae AgamP4 AgamP4.2 chr2L:7516006-7516056 - 17 TGA-G TGA Preliminary EOG732K60 FBgn0035047 Pof-RB No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:7516006-7516056&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004982-RA AGAP004989-RA AGAP004989 A. gambiae AgamP4 AgamP4.2 chr2L:7555596-7555634 - 13 TAA-T TAA EOG7V1S6H FBgn0000017 Abl-RJ FBtr0345369 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:7555596-7555634&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004989-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:16615790-16615873&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0345369 AGAP004990-RA AGAP004990 A. gambiae AgamP4 AgamP4.2 chr2L:7586855-7586872 + 6 TGA-G TGA EOG77HQZ3 FBgn0262732 mbf1-RA FBtr0075393 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:7586855-7586872&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004990-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:16568970-16569098&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075393 AGAP005011-RA AGAP005011 A. gambiae AgamP4 AgamP4.2 chr2L:8136323-8136340 + 6 TGA-C TGA EOG7R5J91 FBgn0014343 mirr-RA FBtr0075911 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:8136323-8136340&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005011-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:12702057-12702179&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075911 AGAP005030-RA AGAP005030 A. gambiae AgamP4 AgamP4.2 chr2L:8587973-8588002 - 10 TGA-A TGA EOG7XDNZ4 FBgn0010575 sbb-RD FBtr0301547 RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:8587973-8588076+chr2L:8588146-8588161&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005030-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:14167554-14167681+chr2R:14167751-14167766&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301547 AGAP005034-RA AGAP005034 A. gambiae AgamP4 AgamP4.2 chr2L:8643962-8644042 - 27 TGA-T TGA EOG7WMQ1F FBgn0050361 mtt-RC No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:8643962-8644042&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005034-RA AGAP005063-RA AGAP005063 A. gambiae AgamP4 AgamP4.2 chr2L:9167112-9167153 - 14 TGA-C TGA EOG7SC04Z FBgn0262114 RanBPM-RC FBtr0088262 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:9167112-9167153&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005063-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:6322728-6323228&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088262 AGAP005074-RA AGAP005074 A. gambiae AgamP4 AgamP4.2 chr2L:9616140-9616298 + 53 TGA-T TGA Preliminary EOG728M7S No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:9616140-9616298&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005074-RA AGAP005088-RA AGAP005088 A. gambiae AgamP4 AgamP4.2 chr2L:9877087-9877629 + 181 TGA-T TGA EOG7T22TW FBgn0050497 CG30497-RD FBtr0331966 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:9877087-9877629&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005088-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:3627092-3627781&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0331966 AGAP005099-RA AGAP005099 A. gambiae AgamP4 AgamP4.2 chr2L:10113494-10113511 + 6 TGA-C TGA Preliminary EOG74RC7H FBgn0015524 otp-RK FBtr0342800 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:10113494-10113511&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005099-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:16771955-16771996&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0342800 AGAP005116-RA AGAP005116 A. gambiae AgamP4 AgamP4.2 chr2L:10240160-10240381 + 74 TGA-C TGA EOG754V69 FBgn0050390 Sgf29-RB FBtr0342888 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:10240160-10240381&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005116-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:17179789-17179818&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0342888 AGAP005127-RA AGAP005127 A. gambiae AgamP4 AgamP4.2 chr2L:10332744-10332854 - 37 TAG-G TAA,TAG Preliminary EOG78133X FBgn0027548 nito-RC FBtr0339122 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:10332744-10332854&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005127-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:3852788-3852835&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0339122 AGAP005139-RA AGAP005139 A. gambiae AgamP4 AgamP4.2 chr2L:10463982-10464002 - 7 TGA-C TGA Preliminary EOG7VJ4DD FBgn0036273 CG10426-RB FBtr0333356 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:10463982-10464002&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005139-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:12274134-12274199&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333356 AGAP005229-RA AGAP005229 A. gambiae AgamP4 AgamP4.2 chr2L:12549161-12549283 - 41 TAG-C TAG Preliminary EOG70SJNX FBgn0035331 MsR1-RA FBtr0072887 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:12549161-12549283&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005229-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:2344118-2344351&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072887 AGAP005245-RJ AGAP005245 A. gambiae AgamP4 AgamP4.2 chr2L:12955042-12955503 + 154 TGA-G TGA Preliminary EOG7454T4 No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:12955042-12955503&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005245-RJ AGAP005245-RK AGAP005245 A. gambiae AgamP4 AgamP4.2 chr2L:12980093-12980200 + 36 TGA-C TGA EOG7454T4 No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:12980093-12980200&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005245-RK AGAP005258-RA AGAP005258 A. gambiae AgamP4 AgamP4.2 chr2L:13331898-13331993 + 32 TGA-A TGA Preliminary EOG74NGZQ FBgn0263980 CG43729-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:13331898-13331993&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005258-RA AGAP005327-RA AGAP005327 A. gambiae AgamP4 AgamP4.2 chr2L:14115470-14115487 + 6 TGA-C TGA EOG77TBNW FBgn0086691 UK114-RB FBtr0332376 RT No No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:14115470-14115487&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005327-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:15274245-15274268&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332376 AGAP005356-RA AGAP005356 A. gambiae AgamP4 AgamP4.2 chr2L:14607017-14607028 + 4 TGA-T TGA RNA Structure EOG7VJ4F6 No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:14607017-14607028&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005356-RA AGAP005393-RA AGAP005393 A. gambiae AgamP4 AgamP4.2 chr2L:14909287-14909379 + 31 TAA-G TAA Preliminary EOG7WTFJD FBgn0014009 Rab2-RB FBtr0336658 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:14909287-14909379&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005393-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:2586050-2586055&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0336658 AGAP005408-RA AGAP005408 A. gambiae AgamP4 AgamP4.2 chr2L:15189310-15189324 - 5 TAG-C TAG EOG7ZH7M1 FBgn0035708 CG8398-RA FBtr0076978 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:15189310-15189324&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005408-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:6611095-6611229&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076978 AGAP005440-RA AGAP005440 A. gambiae AgamP4 AgamP4.2 chr2L:15477310-15477390 - 27 TAG-G TAG Preliminary EOG7M6QR1 FBgn0035477 CG14982-RC FBtr0333134 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:15477310-15477390&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005440-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:3946152-3946202&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333134 AGAP005567-RA AGAP005567 A. gambiae AgamP4 AgamP4.2 chr2L:17316196-17316225 + 10 TAG-C TAG Preliminary EOG767DST FBgn0024179 wit-RA FBtr0073279 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:17316196-17316225&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005567-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:4065214-4065243&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073279 AGAP005599-RA AGAP005599 A. gambiae AgamP4 AgamP4.2 chr2L:17739676-17739729 + 18 TAG-A TAG Preliminary EOG7JHXNH FBgn0264908 pHCl-RR FBtr0343801 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:17739676-17739729&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005599-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:15844846-15844851&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343801 AGAP005633-RA AGAP005633 A. gambiae AgamP4 AgamP4.2 chr2L:18044209-18044226 + 6 TGA-G TGA EOG71PCT0 FBgn0035267 CG13921-RF FBtr0334072 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:18044209-18044226&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005633-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:1751808-1751837&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0334072 AGAP005641-RA AGAP005641 A. gambiae AgamP4 AgamP4.2 chr2L:18131953-18132153 - 67 TAG-G TAG EOG7BCZW9 FBgn0036661 CG9705-RC FBtr0333607 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:18131953-18132153&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005641-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:16774939-16774944&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333607 AGAP005684-RA AGAP005684 A. gambiae AgamP4 AgamP4.2 chr2L:18745920-18745949 + 10 TGA-C TGA Preliminary EOG7XHJ74 FBgn0035540 Syx17-RA FBtr0073293 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:18745920-18745949&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005684-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:4404849-4404983&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073293 AGAP005716-RA AGAP005716 A. gambiae AgamP4 AgamP4.2 chr2L:19567192-19567224 + 11 TGA-C TGA Preliminary EOG7VQVWF FBgn0035815 Snmp2-RD FBtr0334649 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:19567192-19567224&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005716-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:7726400-7726552&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0334649 AGAP005729-RA AGAP005729 A. gambiae AgamP4 AgamP4.2 chr2L:19791460-19791507 - 16 TGA-G TGA EOG793NQX FBgn0005640 Eip63E-RD FBtr0073131 RT No Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:19791460-19791581+chr2L:19791665-19791680&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005729-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:3600467-3600491+chr3L:3607502-3607614&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073131 AGAP005737-RA AGAP005737 A. gambiae AgamP4 AgamP4.2 chr2L:20024721-20025203 + 161 TAG-C TAG Preliminary EOG74Z3Q8 FBgn0035914 CG6282-RA FBtr0076636 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:20024721-20025203&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005737-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:8608512-8609000&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076636 AGAP005831-RA AGAP005831 A. gambiae AgamP4 AgamP4.2 chr2L:22279174-22279212 - 13 TGA-G TGA Preliminary EOG78Q5SF FBgn0267351 Topors-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:22279174-22279212&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005831-RA AGAP005878-RA AGAP005878 A. gambiae AgamP4 AgamP4.2 chr2L:23058812-23059411 - 200 TAG-C TAG EOG764JK9 FBgn0086680 vvl-RA FBtr0076944 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:23058812-23059411&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005878-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:6785210-6786067&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076944 AGAP005898-RA AGAP005898 A. gambiae AgamP4 AgamP4.2 chr2L:23430018-23430041 + 8 TGA-C TGA EOG7NSNJT FBgn0011817 nmo-RH FBtr0333223 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:23425942-23425976+chr2L:23429963-23430041&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005898-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:8040666-8040700+chr3L:8042969-8043050&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333223 AGAP005901-RB AGAP005901 A. gambiae AgamP4 AgamP4.2 chr2L:23482905-23484056 + 384 TGA-C TGA Preliminary EOG7JQP4B FBgn0262579 Ect4-RE FBtr0304994 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:23482905-23484056&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005901-RB http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:8098853-8098888&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0304994 AGAP005916-RA AGAP005916 A. gambiae AgamP4 AgamP4.2 chr2L:23649311-23649403 - 31 TGA-T TGA EOG7QP643 FBgn0035853 Ubc12-RC FBtr0332139 Ambiguous No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:23649311-23649403&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005916-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:8189810-8189839&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332139 AGAP005980-RA AGAP005980 A. gambiae AgamP4 AgamP4.2 chr2L:24447517-24447639 + 41 TGA-C TGA RNA Structure EOG79SRDV FBgn0050491 CG30491-RB FBtr0336997 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:24447517-24447639&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005980-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:3544206-3544217&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0336997 AGAP006059-RA AGAP006059 A. gambiae AgamP4 AgamP4.2 chr2L:25801746-25801799 - 18 TGA-C TGA Preliminary Double 14 RNA Structure EOG7V1S6J FBgn0052206 CG32206-RB FBtr0089796 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:25801704-25801799&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006059-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:19336317-19336370&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0089796 AGAP006133-RA AGAP006133 A. gambiae AgamP4 AgamP4.2 chr2L:27049091-27049135 - 15 TAG-T TAG RNA Structure EOG7M6QQ8 FBgn0000541 E(bx)-RJ FBtr0332104 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:27049091-27049135&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006133-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:234251-234298&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332104 AGAP006173-RA AGAP006173 A. gambiae AgamP4 AgamP4.2 chr2L:27653072-27653122 - 17 TGA-T TGA Preliminary EOG7CZWPD FBgn0033017 CG10465-RA FBtr0086094 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:27653072-27653122&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006173-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:1227269-1227292&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086094 AGAP006242-RA AGAP006242 A. gambiae AgamP4 AgamP4.2 chr2L:28588454-28588546 + 31 TGA-C TGA Preliminary EOG7GBSFK FBgn0036056 CG6709-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:28588454-28588546&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006242-RA AGAP006346-RA AGAP006346 A. gambiae AgamP4 AgamP4.2 chr2L:30128728-30128757 - 10 TAA-C TAA Preliminary EOG7H1W2P FBgn0086676 spin-RE No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:30128728-30128757&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006346-RA AGAP006382-RA AGAP006382 A. gambiae AgamP4 AgamP4.2 chr2L:31014469-31014492 + 8 TGA-G TGA RNA Structure EOG7454S7 No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:31014469-31014492&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006382-RA AGAP006403-RA AGAP006403 A. gambiae AgamP4 AgamP4.2 chr2L:31292789-31292809 + 7 TGA-G TGA EOG7TV1QX FBgn0005624 Psc-RC FBtr0345375 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:31292789-31292809&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006403-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:8853996-8854022&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0345375 AGAP006444-RA AGAP006444 A. gambiae AgamP4 AgamP4.2 chr2L:32185812-32185865 + 18 TGA-C TGA Preliminary RNA Structure EOG7HJ785 FBgn0052432 CG32432-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:32185812-32185865&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006444-RA AGAP006454-RA AGAP006454 A. gambiae AgamP4 AgamP4.2 chr2L:32305731-32305862 - 44 TAA-G TAA EOG790SH8 No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:32305731-32305862&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006454-RA AGAP006474-RA AGAP006474 A. gambiae AgamP4 AgamP4.2 chr2L:32674673-32674695+chr2L:32674763-32674853 + 38 TGA-C TGA Preliminary Double 6 Triple 7 EOG754V5M FBgn0036980 RhoBTB-RA FBtr0078185 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:32674673-32674695+chr2L:32674763-32674892&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006474-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:20374799-20374821+chr3L:20374892-20374982&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0078185 AGAP006475-RA AGAP006475 A. gambiae AgamP4 AgamP4.2 chr2L:32681036-32681089 - 18 TGA-T TGA Preliminary EOG7QCKBZ FBgn0010051 Itp-r83A-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:32681036-32681176+chr2L:32681254-32681256&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006475-RA AGAP006496-RA AGAP006496 A. gambiae AgamP4 AgamP4.2 chr2L:33023261-33023290 - 10 TGA-G TGA Double 28 EOG7ND5MC No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:33023177-33023290&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006496-RA AGAP006528-RA AGAP006528 A. gambiae AgamP4 AgamP4.2 chr2L:33920822-33921007 + 62 TGA-T TGA Preliminary RNA Structure EOG7CCP71 FBgn0000414 Dab-RA FBtr0075318 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:33920822-33921007&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006528-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:16716442-16716849&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075318 AGAP006532-RA AGAP006532 A. gambiae AgamP4 AgamP4.2 chr2L:33945915-33945917 + 1 TAG-T TAG Double 183 Double-Stop EOG7GJHW7 FBgn0261445 sgl-RA FBtr0076938 Ambiguous No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:33945915-33946466&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006532-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:6953208-6953285&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076938 AGAP006536-RA AGAP006536 A. gambiae AgamP4 AgamP4.2 chr2L:34016198-34016263 + 22 TAA-C TAA EOG7M108G FBgn0013751 Awh-RA No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:34016032-34016095+chr2L:34016172-34016263&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006536-RA AGAP006537-RA AGAP006537 A. gambiae AgamP4 AgamP4.2 chr2L:34024345-34024404 + 20 TGA-C TGA EOG7M108G FBgn0013751 Awh-RA No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:34024345-34024404&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006537-RA AGAP006590-RA AGAP006590 A. gambiae AgamP4 AgamP4.2 chr2L:34294403-34294519 - 39 TAG-C TAG Preliminary RNA Structure EOG7R8DHC FBgn0085447 sif-RF FBtr0112712 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:34294403-34294519&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006590-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:5735149-5735322&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0112712 AGAP006606-RA AGAP006606 A. gambiae AgamP4 AgamP4.2 chr2L:34687987-34688055 - 23 TGA-C TGA Preliminary EOG7P0D22 No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:34687987-34688055&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006606-RA AGAP006653-RA AGAP006653 A. gambiae AgamP4 AgamP4.2 chr2L:35709219-35709263 + 15 TGA-T TGA EOG76XHGX FBgn0036697 rogdi-RA FBtr0075283 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:35708491-35708511+chr2L:35709150-35709263&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006653-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:17046365-17046385+chr3L:17047398-17047583&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075283 AGAP006762-RA AGAP006762 A. gambiae AgamP4 AgamP4.2 chr2L:38011942-38011986 + 15 TGA-C TGA Preliminary EOG7VJ4DC FBgn0085390 Dgk-RG FBtr0112579 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:38011942-38011986&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006762-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:3724211-3724327&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0112579 AGAP006776-RA AGAP006776 A. gambiae AgamP4 AgamP4.2 chr2L:38134171-38134185 - 5 TGA-C TGA Preliminary EOG7ZM3T8 FBgn0035106 rno-RD FBtr0305549 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:38134171-38134185&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006776-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:188546-188548&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0305549 AGAP006800-RA AGAP006800 A. gambiae AgamP4 AgamP4.2 chr2L:38659388-38659471 + 28 TAG-G TAG Preliminary EOG7QCKCZ FBgn0039350 jigr1-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:38659388-38659471&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006800-RA AGAP006884-RA AGAP006884 A. gambiae AgamP4 AgamP4.2 chr2L:39348566-39348640 - 25 TAG-C TAG Preliminary EOG78133H FBgn0034854 Golgin245-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:39348566-39348667+chr2L:39348731-39348793&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006884-RA AGAP006942-RA AGAP006942 A. gambiae AgamP4 AgamP4.2 chr2L:40187649-40187747 + 33 TAG-A TAG Preliminary EOG7RC8RD FBgn0042177 CG32164-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:40187649-40187747&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006942-RA AGAP006943-RA AGAP006943 A. gambiae AgamP4 AgamP4.2 chr2L:40190483-40190503 - 7 TAG-C TAG EOG77DVP9 FBgn0036662 CG9706-RB FBtr0075327 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:40190483-40190503&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006943-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:16778152-16778166&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075327 AGAP007008-RA AGAP007008 A. gambiae AgamP4 AgamP4.2 chr2L:40792437-40792493 - 19 TAA-C TAA EOG7X9SPZ FBgn0259145 CG42260-RD FBtr0330241 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:40792437-40792493&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007008-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:18631317-18631376&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330241 AGAP007046-RA AGAP007046 A. gambiae AgamP4 AgamP4.2 chr2L:41624643-41624687 - 15 TGA-T TGA Preliminary RNA Structure EOG7PKMG3 FBgn0005564 Shal-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:41624643-41624711+chr2L:41631689-41631754&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007046-RA AGAP007080-RA AGAP007080 A. gambiae AgamP4 AgamP4.2 chr2L:42229998-42230021 - 8 TGA-T TGA Preliminary EOG75R2M5 FBgn0045063 fdl-RF FBtr0346633 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:42229998-42230021&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007080-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:8375933-8375944&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0346633 AGAP007106-RA AGAP007106 A. gambiae AgamP4 AgamP4.2 chr2L:42800422-42800487 - 22 TGA-T TGA Preliminary EOG7PCVZT FBgn0016756 Ubp64E-RD FBtr0306259 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:42800422-42800487&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007106-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:5754485-5754496&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0306259 AGAP007108-RA AGAP007108 A. gambiae AgamP4 AgamP4.2 chr2L:42829316-42829432 + 39 TGA-G TGA Preliminary EOG7PW75J FBgn0067864 Patj-RA FBtr0301625 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:42829316-42829432&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007108-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:1801825-1801875&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301625 AGAP007302-RA AGAP007302 A. gambiae AgamP4 AgamP4.2 chr2L:45100319-45100594 - 92 TGA-C TGA Preliminary EOG7N3JVT FBgn0259977 Tdc1-RA FBtr0086143 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:45100319-45100594&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007302-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:2564769-2564810&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086143 AGAP007333-RA AGAP007333 A. gambiae AgamP4 AgamP4.2 chr2L:45633849-45633893 + 15 TAG-C TAG EOG79H4PX FBgn0015806 S6k-RA No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:45633682-45633770+chr2L:45633848-45633893&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007333-RA AGAP007367-RA AGAP007367 A. gambiae AgamP4 AgamP4.2 chr2L:46108937-46108984 + 16 TGA-G TGA Preliminary EOG7G51XB FBgn0034136 DAT-RA FBtr0087125 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:46108937-46108984&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007367-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:12446854-12446892&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087125 AGAP007373-RA AGAP007373 A. gambiae AgamP4 AgamP4.2 chr2L:46136701-46136712 - 4 TGA-C TGA EOG78Q5SS FBgn0029837 Tsp5D-RB FBtr0114466 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:46136701-46136712&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007373-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:5963983-5963994&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0114466 AGAP007485-RA AGAP007485 A. gambiae AgamP4 AgamP4.2 chr2L:46858480-46858530 + 17 TGA-T TGA Preliminary EOG7V1S7R FBgn0034626 CG10795-RA FBtr0071609 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:46858480-46858530&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007485-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:17270991-17271065&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071609 AGAP007512-RA AGAP007512 A. gambiae AgamP4 AgamP4.2 chr2L:47106986-47107009 + 8 TGA-G TGA Preliminary EOG7NKX29 FBgn0004373 fwd-RD FBtr0332841 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:47106986-47107009&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007512-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:306335-306358&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332841 AGAP007522-RA AGAP007522 A. gambiae AgamP4 AgamP4.2 chr2L:47143842-47144129 + 96 TGA-C TGA Preliminary EOG7HJ79B FBgn0003008 or-RA FBtr0072152 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:47143842-47144129&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007522-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:19856301-19856315&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072152 AGAP007548-RA AGAP007548 A. gambiae AgamP4 AgamP4.2 chr2L:47479920-47479988 - 23 TAA-C TAA Preliminary EOG7PW768 FBgn0036260 Rh7-RA FBtr0076020 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:47479920-47479988&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007548-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:12158995-12159081&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076020 AGAP007585-RA AGAP007585 A. gambiae AgamP4 AgamP4.2 chr2L:47839470-47839529 - 20 TGA-T TGA Preliminary EOG7CP8XV FBgn0261698 CG42732-RD FBtr0303080 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:47839470-47839529&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007585-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:6211181-6211285&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0303080 AGAP007623-RA AGAP007623 A. gambiae AgamP4 AgamP4.2 chr2L:48362787-48362804 - 6 TGA-T TGA Double 25 EOG7R2P1N FBgn0021760 chb-RB No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:48362712-48362892+chr2L:48362974-48362975&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007623-RA AGAP007646-RA AGAP007646 A. gambiae AgamP4 AgamP4.2 chr2L:48665958-48666050 - 31 TAA-T TAA Preliminary RNA Structure EOG7RZH63 FBgn0034389 Mctp-RA FBtr0110970 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:48665958-48666131+chr2L:48666205-48666213&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007646-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:14661102-14661110+chr2R:14661168-14661458&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0110970 AGAP007657-RA AGAP007657 A. gambiae AgamP4 AgamP4.2 chr2L:48814615-48814650 + 12 TGA-G TGA RNA Structure EOG7SC067 FBgn0010415 Sdc-RK FBtr0342895 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:48814615-48814650&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007657-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:17282041-17282067&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0342895 AGAP007686-RA AGAP007686 A. gambiae AgamP4 AgamP4.2 chr2L:49055349-49055381 - 11 TGA-C TGA EOG7C8T0N FBgn0032013 Scgalpha-RA FBtr0079597 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:49055349-49055381&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007686-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:8305164-8305193&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079597 AGAP007712-RA AGAP007712 A. gambiae AgamP4 AgamP4.2 chr2L:49190952-49190978 + 9 TGA-T TGA Preliminary EOG7BGV2Q FBgn0032796 CG10188-RB FBtr0081282 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:49190952-49190978&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007712-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:19503099-19503128&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081282 AGAP007720-RA AGAP007720 A. gambiae AgamP4 AgamP4.2 chr2L:49268946-49268993 - 16 TGA-T TGA Preliminary EOG7HFC1N FBgn0033500 CG12913-RB FBtr0339450 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:49268946-49268993&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007720-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:6142350-6142427&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0339450 AGAP007739-RA AGAP007739 A. gambiae AgamP4 AgamP4.2 chr3R:169997-170089 - 31 TGA-G TGA Preliminary EOG74RC71 FBgn0263933 ebi-RA FBtr0078055 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:169997-170089&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007739-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:417635-417670&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0078055 AGAP007754-RA AGAP007754 A. gambiae AgamP4 AgamP4.2 chr3R:273312-273323 - 4 TGA-C TGA Preliminary EOG72CGGS No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:273312-273323&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007754-RA AGAP007765-RA AGAP007765 A. gambiae AgamP4 AgamP4.2 chr3R:498376-498480 - 35 TAA-G TAA Preliminary EOG73JXBV FBgn0031904 CG5149-RA FBtr0079469 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:498376-498480&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007765-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:7384803-7384886&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079469 AGAP007807-RA AGAP007807 A. gambiae AgamP4 AgamP4.2 chr3R:1276294-1276347 + 18 TGA-G TGA Preliminary EOG7QS2B7 FBgn0033639 CG9003-RA FBtr0088088 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:1276294-1276347&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007807-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:7530514-7530693&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088088 AGAP007846-RA AGAP007846 A. gambiae AgamP4 AgamP4.2 chr3R:1866207-1866227 - 7 TGA-G TGA Double 13 Triple 120 EOG7ND5KH FBgn0261509 haf-RF FBtr0344146 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:1865808-1866227&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007846-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:1606520-1606540&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0344146 AGAP007847-RA AGAP007847 A. gambiae AgamP4 AgamP4.2 chr3R:1975559-1975612 - 18 TGA-C TGA Preliminary EOG7ZDCBP FBgn0016930 Dyrk2-RA FBtr0089288 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:1975559-1975612&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007847-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:14186066-14186137&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0089288 AGAP007865-RA AGAP007865 A. gambiae AgamP4 AgamP4.2 chr3R:2366328-2366375 + 16 TGA-C TGA Preliminary RNA Structure EOG7ZQ020 FBgn0032363 CG6509-RD FBtr0336631 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:2366328-2366375&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007865-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:11509249-11509299&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0336631 AGAP007886-RA AGAP007886 A. gambiae AgamP4 AgamP4.2 chr3R:2472714-2472737 - 8 TGA-G TGA EOG7M1090 FBgn0032297 CG17124-RC FBtr0340246 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:2472714-2472779+chr3R:2473024-2473065+chr3R:2474135-2474140&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007886-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:10745404-10745571+chr2L:10745635-10745640&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0340246 AGAP007984-RA AGAP007984 A. gambiae AgamP4 AgamP4.2 chr3R:3670908-3670931 + 8 TGA-C TGA Preliminary EOG7R8DHJ FBgn0031399 mio-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:3670908-3670931&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007984-RA AGAP007992-RA AGAP007992 A. gambiae AgamP4 AgamP4.2 chr3R:3850496-3850537 - 14 TGA-C TGA EOG7S57P4 FBgn0031424 VGlut-RA No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:3850496-3850537&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007992-RA AGAP008009-RA AGAP008009 A. gambiae AgamP4 AgamP4.2 chr3R:4024559-4024759 - 67 TAG-G TAG EOG7SFVD2 FBgn0015380 drl-RA FBtr0081195 RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:4024559-4024759&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008009-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:19207738-19207842&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081195 AGAP008077-RA AGAP008077 A. gambiae AgamP4 AgamP4.2 chr3R:5111185-5111214 - 10 TGA-G TGA EOG7X6XGB FBgn0032673 CG7180-RC FBtr0343822 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:5111185-5111295+chr3R:5111366-5111374&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008077-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:18181808-18182068&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343822 AGAP008166-RA AGAP008166 A. gambiae AgamP4 AgamP4.2 chr3R:6296518-6296583 - 22 TGA-T TGA EOG7HN3HM FBgn0024230 Hs2st-RA FBtr0081288 Ambiguous No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:6296518-6296583&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008166-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:19443247-19443303&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081288 AGAP008221-RA AGAP008221 A. gambiae AgamP4 AgamP4.2 chr3R:7044275-7044307 + 11 TGA-A TGA EOG7NH1TC FBgn0263846 CG43707-RD FBtr0321304 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:7043474-7043511+chr3R:7044223-7044307&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008221-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:3768040-3768077+chr2L:3768140-3768269&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0321304 AGAP008228-RA AGAP008228 A. gambiae AgamP4 AgamP4.2 chr3R:7176499-7176531 - 11 TGA-C TGA Preliminary EOG7F2G9T FBgn0030976 CG7378-RC FBtr0342848 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:7176499-7176531&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008228-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:18803123-18803143&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0342848 AGAP008241-RA AGAP008241 A. gambiae AgamP4 AgamP4.2 chr3R:7590725-7591279 + 185 TAG-C TAG Preliminary EOG7K18VM FBgn0027101 Dyrk3-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:7590725-7591279&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008241-RA AGAP008252-RA AGAP008252 A. gambiae AgamP4 AgamP4.2 chr3R:7902562-7902576 - 5 TGA-T TGA EOG7KX40M FBgn0033924 CG8613-RA FBtr0087546 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:7902562-7902576&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008252-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:10242774-10242803&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087546 AGAP008312-RA AGAP008312 A. gambiae AgamP4 AgamP4.2 chr3R:8862100-8862222 - 41 TGA-G TGA EOG7QCKCK FBgn0040005 CG17883-RD FBtr0334996 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:8862100-8862222&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008312-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:560984-560989&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0334996 AGAP008379-RA AGAP008379 A. gambiae AgamP4 AgamP4.2 chr3R:10123654-10123701 - 16 TAG-C TAG Preliminary EOG79M0X8 FBgn0083962 CG34126-RB No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:10123654-10123701&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008379-RA AGAP008518-RA AGAP008518 A. gambiae AgamP4 AgamP4.2 chr3R:11748110-11748154 + 15 TGA-C TGA Preliminary EOG7JXDMX FBgn0041781 SCAR-RA FBtr0080148 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:11748110-11748154&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008518-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:10981666-10981722&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0080148 AGAP008533-RA AGAP008533 A. gambiae AgamP4 AgamP4.2 chr3R:11963025-11963132 - 36 TGA-C TGA Preliminary EOG706B7B FBgn0027491 Cdk5alpha-RB FBtr0331670 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:11963025-11963132&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008533-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:10308244-10308333&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0331670 AGAP008574-RA AGAP008574 A. gambiae AgamP4 AgamP4.2 chr3R:13114868-13115767 + 300 TGA-C TGA Preliminary RNA Structure EOG74RC7B FBgn0031897 CG13784-RB No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:13114868-13115767&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008574-RA AGAP008588-RA AGAP008588 A. gambiae AgamP4 AgamP4.2 chr3R:13330756-13330839 - 28 TAG-C TAA,TAG EOG78T214 FBgn0028875 nAChRalpha5-RH FBtr0309867 RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:13330756-13330839&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008588-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:14089261-14089347&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0309867 AGAP008656-RA AGAP008656 A. gambiae AgamP4 AgamP4.2 chr3R:14277282-14278340 - 353 TGA-T TGA Preliminary EOG771CQ3 FBgn0011259 Sema-1a-RA FBtr0079691 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:14277282-14278340&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008656-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:8666212-8666889&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079691 AGAP008803-RA AGAP008803 A. gambiae AgamP4 AgamP4.2 chr3R:18057920-18058549 - 210 TAG-C TAG EOG7RG50D FBgn0262126 Sec24CD-RA FBtr0077810 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:18057920-18058549&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008803-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:2231934-2232047&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0077810 AGAP008811-RA AGAP008811 A. gambiae AgamP4 AgamP4.2 chr3R:18133763-18133960 - 66 TGA-T TGA Preliminary EOG7WHTSS FBgn0032225 CG5022-RA FBtr0079999 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:18133763-18133960&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008811-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:10347552-10347584&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079999 AGAP008814-RA AGAP008814 A. gambiae AgamP4 AgamP4.2 chr3R:18284293-18284325 + 11 TAG-C TAG EOG7X6XGT FBgn0000413 da-RC FBtr0332196 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:18283942-18283989+chr3R:18284251-18284325&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008814-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:10392195-10392389&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332196 AGAP008826-RA AGAP008826 A. gambiae AgamP4 AgamP4.2 chr3R:18934239-18934280 - 14 TGA-C TGA Preliminary EOG7NSNK6 FBgn0264443 CG43861-RD FBtr0345432 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:18934239-18934280&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008826-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:19969743-19970036&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0345432 AGAP008928-RA AGAP008928 A. gambiae AgamP4 AgamP4.2 chr3R:21099032-21099106 - 25 TGA-A TGA EOG76QS0J FBgn0029137 Patsas-RA FBtr0080362 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:21099032-21099106&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008928-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:12101236-12101247&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0080362 AGAP008977-RA AGAP008977 A. gambiae AgamP4 AgamP4.2 chr3R:22451967-22451987 + 7 TGA-T TGA Preliminary EOG7VBCXK FBgn0040080 raps-RA FBtr0085189 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:22451967-22451987&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008977-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:23411045-23411248&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085189 AGAP008980-RA AGAP008980 A. gambiae AgamP4 AgamP4.2 chr3R:22547540-22547689 - 50 TAG-C TAG EOG71CS42 FBgn0000099 ap-RE FBtr0335274 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:22547540-22547689&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008980-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:1595258-1595437&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0335274 AGAP008989-RA AGAP008989 A. gambiae AgamP4 AgamP4.2 chr3R:22774005-22774037 + 11 TGA-C TGA Preliminary EOG7Z6MWG No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:22774005-22774037&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008989-RA AGAP009063-RA AGAP009063 A. gambiae AgamP4 AgamP4.2 chr3R:25144911-25144913 - 1 TGA-T TGA Double 13 Double-Stop EOG7P90RD No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:25144872-25144913&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009063-RA AGAP009073-RA AGAP009073 A. gambiae AgamP4 AgamP4.2 chr3R:25422323-25422946 + 208 TGA-C TGA EOG7KQCJK FBgn0031683 CG4230-RA FBtr0079019 RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:25422323-25422946&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009073-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:5098385-5098573&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079019 AGAP009123-RA AGAP009123 A. gambiae AgamP4 AgamP4.2 chr3R:26217302-26217370 - 23 TGA-C TGA Preliminary EOG7ZSV91 FBgn0031568 CG10019-RC FBtr0321291 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:26217302-26217370&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009123-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:3752191-3752211&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0321291 AGAP009138-RA AGAP009138 A. gambiae AgamP4 AgamP4.2 chr3R:27106050-27106151 + 34 TGA-C TGA EOG7VTR47 FBgn0015400 kek2-RA FBtr0080252 Ambiguous No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:27106050-27106151&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009138-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:11624504-11624563&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0080252 AGAP009158-RA AGAP009158 A. gambiae AgamP4 AgamP4.2 chr3R:27712443-27712553 - 37 TAG-C TAG EOG79PW56 No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:27712443-27712553&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009158-RA AGAP009177-RA AGAP009177 A. gambiae AgamP4 AgamP4.2 chr3R:28152886-28152939 - 18 TGA-G TGA Preliminary EOG7BCZVN No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:28152886-28152939&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009177-RA AGAP009180-RA AGAP009180 A. gambiae AgamP4 AgamP4.2 chr3R:28180139-28180180 + 14 TGA-C TGA Preliminary EOG7Z0WCD FBgn0001965 Sos-RA FBtr0080541 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:28179948-28180002+chr3R:28180104-28180180&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009180-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:13819224-13819269+chr2L:13819335-13819543&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0080541 AGAP009255-RA AGAP009255 A. gambiae AgamP4 AgamP4.2 chr3R:29969907-29970029 + 41 TGA-G TGA Preliminary EOG7BGV36 FBgn0031534 Snx1-RB FBtr0343238 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:29969748-29969786+chr3R:29969856-29970029&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009255-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:3451415-3451453+chr2L:3451517-3451696&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343238 AGAP009274-RA AGAP009274 A. gambiae AgamP4 AgamP4.2 chr3R:30516752-30516784 + 11 TGA-G TGA EOG7BPKJZ No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:30516752-30516784&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009274-RA AGAP009286-RA AGAP009286 A. gambiae AgamP4 AgamP4.2 chr3R:30818488-30818616 - 43 TGA-C TGA Preliminary EOG751ZZF FBgn0031375 erm-RA FBtr0077870 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:30818488-30818616&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009286-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:1950795-1951055&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0077870 AGAP009332-RA AGAP009332 A. gambiae AgamP4 AgamP4.2 chr3R:31509140-31509142 + 1 TGA-T TGA Double 26 Double-Stop EOG73NSM7 No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:31509140-31509220&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009332-RA AGAP009333-RA AGAP009333 A. gambiae AgamP4 AgamP4.2 chr3R:31516548-31516880 - 111 TGA-G TGA EOG72VTPW FBgn0031359 Rim2-RD FBtr0306167 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:31516548-31516880&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009333-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:1717073-1717102&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0306167 AGAP009446-RA AGAP009446 A. gambiae AgamP4 AgamP4.2 chr3R:33539325-33539495 - 57 TGA-T TGA Preliminary EOG7C068N FBgn0026787 Nhe1-RB FBtr0301452 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:33539325-33539495&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009446-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:104416-104472&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301452 AGAP009574-RA AGAP009574 A. gambiae AgamP4 AgamP4.2 chr3R:36380870-36380950 - 27 TGA-T TGA EOG7SFVD9 FBgn0039673 CG7568-RD FBtr0330294 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:36380870-36380950&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009574-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:25424974-25425018&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330294 AGAP009619-RA AGAP009619 A. gambiae AgamP4 AgamP4.2 chr3R:37063500-37064303 + 268 TGA-G TGA EOG7K453S FBgn0019932 SamDC-RA FBtr0079994 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:37063500-37064303&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009619-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:10341382-10341426&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079994 AGAP009664-RA AGAP009664 A. gambiae AgamP4 AgamP4.2 chr3R:37779693-37779743 - 17 TGA-C TGA EOG7Z3RMJ FBgn0041092 tai-RC No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:37779693-37779772+chr3R:37780840-37780900&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009664-RA AGAP009677-RA AGAP009677 A. gambiae AgamP4 AgamP4.2 chr3R:38314792-38314899 + 36 TAG-C TAG Preliminary EOG7MSZ6H No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:38314792-38314899&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009677-RA AGAP009747-RA AGAP009747 A. gambiae AgamP4 AgamP4.2 chr3R:42130168-42130170 - 1 TGA-T TGA Double 36 Double-Stop EOG72GBRD FBgn0085638 CG41378-RB FBtr0301790 Non-RT No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:42130060-42130170&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009747-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2RHet:1545465-1545470&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301790 AGAP009852-RA AGAP009852 A. gambiae AgamP4 AgamP4.2 chr3R:44347912-44347926 - 5 TGA-A TGA Preliminary EOG767DV6 FBgn0039969 Fis1-RF FBtr0273211 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:44347912-44347926&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009852-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:1491377-1491400&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0273211 AGAP009888-RA AGAP009888 A. gambiae AgamP4 AgamP4.2 chr3R:44753879-44753917 + 13 TGA-A TGA Preliminary EOG77TBNX FBgn0052831 CG33695-RF FBtr0091683 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:44753879-44753917&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009888-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:11279464-11279502&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0091683 AGAP009925-RA AGAP009925 A. gambiae AgamP4 AgamP4.2 chr3R:45390740-45390862 + 41 TGA-T TGA Preliminary Double 26 EOG74JMRD FBgn0002945 nkd-RB FBtr0332649 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:45390740-45390940&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009925-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:18998633-18998770&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332649 AGAP009931-RA AGAP009931 A. gambiae AgamP4 AgamP4.2 chr3R:45438147-45438236 + 30 TAG-G TAG EOG7RVMZH FBgn0031640 Mon1-RA FBtr0077387 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:45438147-45438236&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009931-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:4852456-4852485&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0077387 AGAP009932-RA AGAP009932 A. gambiae AgamP4 AgamP4.2 chr3R:45442251-45442322 - 24 TAG-C TAG EOG786TKB FBgn0051660 pog-RF FBtr0336831 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:45442251-45442322&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009932-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:4875085-4875129&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0336831 AGAP009950-RA AGAP009950 A. gambiae AgamP4 AgamP4.2 chr3R:46104981-46105031 + 17 TAA-C TAA EOG7RK17D FBgn0041111 lilli-RH FBtr0332458 Ambiguous No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:46104981-46105031&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009950-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:2952226-2952369&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332458 AGAP009952-RA AGAP009952 A. gambiae AgamP4 AgamP4.2 chr3R:46166464-46166757 + 98 TAA-A TAA Preliminary EOG7N3JWC FBgn0010263 Rbp9-RB FBtr0077637 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:46166464-46166757&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009952-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:2963387-2964121&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0077637 AGAP009970-RA AGAP009970 A. gambiae AgamP4 AgamP4.2 chr3R:46921073-46921138 + 22 TAG-G TAG Preliminary EOG7K71B1 FBgn0027568 Cand1-RB FBtr0332198 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:46921073-46921138&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009970-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:10358274-10358306&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332198 AGAP010067-RA AGAP010067 A. gambiae AgamP4 AgamP4.2 chr3R:48569145-48569279 - 45 TGA-C TGA RNA Structure EOG7428JR FBgn0263220 Hk-RD FBtr0307876 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:48569145-48569279&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010067-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:10133330-10133476&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0307876 AGAP010076-RA AGAP010076 A. gambiae AgamP4 AgamP4.2 chr3R:48628995-48629636 - 214 TGA-G TGA EOG77HQXP FBgn0025777 homer-RA FBtr0079306 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:48628995-48629636&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010076-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:6720559-6720942+chr2L:6720997-6721023&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079306 AGAP010138-RA AGAP010138 A. gambiae AgamP4 AgamP4.2 chr3R:49345247-49345279 + 11 TAG-G TAG RNA Structure EOG783ZCH FBgn0263355 CG31688-RB FBtr0273378 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:49345247-49345279&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010138-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:20441858-20441890&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0273378 AGAP010184-RA AGAP010184 A. gambiae AgamP4 AgamP4.2 chr3R:49983850-49983894 - 15 TGA-G TAA,TGA Preliminary RNA Structure EOG7QGFM1 FBgn0000547 ed-RB FBtr0334265 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:49983850-49983894&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010184-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:4113803-4113967&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0334265 AGAP010201-RA AGAP010201 A. gambiae AgamP4 AgamP4.2 chr3R:50614016-50614348 - 111 TGA-T TGA EOG7NSNJR FBgn0001994 crp-RB FBtr0343814 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:50614016-50614348&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010201-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:16265158-16265520&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343814 AGAP010206-RA AGAP010206 A. gambiae AgamP4 AgamP4.2 chr3R:50702199-50702258 - 20 TAA-C TAA Preliminary EOG7BGV2T FBgn0000183 BicD-RA FBtr0081002 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:50702199-50702258&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010206-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:17461666-17461725&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081002 AGAP010260-RA AGAP010260 A. gambiae AgamP4 AgamP4.2 chr3R:51755482-51755583 + 34 TGA-G TGA Preliminary EOG75TXW2 FBgn0051221 CG31221-RA FBtr0083762 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:51755482-51755583&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010260-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:15282990-15283094&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083762 AGAP010355-RA AGAP010355 A. gambiae AgamP4 AgamP4.2 chr3L:2111321-2111365 + 15 TAA-T TAA EOG72K6ZV FBgn0266129 lov-RB FBtr0072457 RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:2111321-2111365&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010355-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:20974140-20974430&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072457 AGAP010357-RA AGAP010357 A. gambiae AgamP4 AgamP4.2 chr3L:2139147-2139203 + 19 TGA-T TGA EOG7TJF23 No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:2139147-2139203&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010357-RA AGAP010388-RA AGAP010388 A. gambiae AgamP4 AgamP4.2 chr3L:2456283-2456303 - 7 TAG-C TAG Preliminary EOG7SNKVJ FBgn0265974 ttv-RC FBtr0333165 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:2456283-2456303&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010388-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:10471732-10471767&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333165 AGAP010390-RA AGAP010390 A. gambiae AgamP4 AgamP4.2 chr3L:2482826-2483236 - 137 TGA-C TGA Preliminary EOG7B67C4 FBgn0033943 CG12869-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:2482826-2483236&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010390-RA AGAP010402-RA AGAP010402 A. gambiae AgamP4 AgamP4.2 chr3L:2721429-2721635 - 69 TGA-C TGA EOG75BKP4 FBgn0053096 CG33096-RG FBtr0344622 RT Unpaired RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:2721429-2721635&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010402-RA AGAP010442-RA AGAP010442 A. gambiae AgamP4 AgamP4.2 chr3L:3726304-3726438 + 45 TGA-C TGA Preliminary Double 21 EOG79WMN9 FBgn0016797 fz2-RB FBtr0075028 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:3726304-3726501&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010442-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:19136966-19137301&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075028 AGAP010460-RA AGAP010460 A. gambiae AgamP4 AgamP4.2 chr3L:3929149-3929175 - 9 TAA-T TAA Preliminary EOG7H1W3T FBgn0036932 CG14184-RB FBtr0302366 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:3929149-3929175&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010460-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:20021049-20021066&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0302366 AGAP010474-RA AGAP010474 A. gambiae AgamP4 AgamP4.2 chr3L:4170963-4170968 + 2 TAG-C TAG EOG7TXWZQ FBgn0036235 CG6938-RB FBtr0290131 RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:4170963-4170968&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010474-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:11983445-11983492&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0290131 AGAP010585-RA AGAP010585 A. gambiae AgamP4 AgamP4.2 chr3L:6544883-6544918 + 12 TGA-T TGA Preliminary No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:6544883-6544918&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010585-RA AGAP010599-RA AGAP010599 A. gambiae AgamP4 AgamP4.2 chr3L:7068611-7068655 + 15 TAG-C TAG Preliminary EOG73VJ2B FBgn0020312 CG4050-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:7068611-7068655&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010599-RA AGAP010752-RA AGAP010752 A. gambiae AgamP4 AgamP4.2 chr3L:9824704-9824754 + 17 TGA-G TGA Preliminary EOG7K9WMG FBgn0035248 CG13919-RA FBtr0072759 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:9824704-9824754&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010752-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:1645938-1645943&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072759 AGAP010769-RA AGAP010769 A. gambiae AgamP4 AgamP4.2 chr3L:10104006-10104050 + 15 TGA-C TGA EOG71GNC5 FBgn0039690 CG1969-RB FBtr0085474 RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:10104006-10104050&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010769-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:25567116-25567154&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085474 AGAP010776-RA AGAP010776 A. gambiae AgamP4 AgamP4.2 chr3L:10179669-10179755 - 29 TAG-C TAG EOG7HFC2K No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:10179669-10179755&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010776-RA AGAP010867-RA AGAP010867 A. gambiae AgamP4 AgamP4.2 chr3L:12159045-12159086 - 14 TGA-C TGA EOG71S82J FBgn0005636 nvy-RA No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:12159045-12159086&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010867-RA AGAP010910-RA AGAP010910 A. gambiae AgamP4 AgamP4.2 chr3L:12896168-12896257 - 30 TAA-C TAA,TAG Preliminary EOG75JB49 FBgn0266438 CG45068-RA FBtr0344430 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:12896168-12896257&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010910-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:20301635-20301679&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0344430 AGAP011055-RA AGAP011055 A. gambiae AgamP4 AgamP4.2 chr3L:15794843-15794878 - 12 TGA-G TGA Preliminary EOG7N99BV FBgn0016696 Pitslre-RG FBtr0331523 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:15794843-15794878&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011055-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:20769808-20769822&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0331523 AGAP011097-RA AGAP011097 A. gambiae AgamP4 AgamP4.2 chr3L:16798569-16798640 - 24 TGA-C TGA Preliminary RNA Structure EOG7135CG FBgn0029105 alpha-catenin-related-RA FBtr0072148 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:16798569-16798640&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011097-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:19848860-19848928&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072148 AGAP011115-RA AGAP011115 A. gambiae AgamP4 AgamP4.2 chr3L:17227495-17227566 + 24 TGA-G TGA RNA Structure EOG76TN89 No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:17227495-17227566&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011115-RA AGAP011133-RA AGAP011133 A. gambiae AgamP4 AgamP4.2 chr3L:17694780-17694812 + 11 TGA-G TGA EOG79PW5G FBgn0003204 ras-RE FBtr0343043 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:17694780-17694812&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011133-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:10642237-10642395&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343043 AGAP011254-RA AGAP011254 A. gambiae AgamP4 AgamP4.2 chr3L:20103910-20103924 - 5 TGA-C TGA EOG7FC31V FBgn0035866 CG7197-RA FBtr0076715 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:20103910-20103973+chr3L:20104071-20104111&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011254-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:8291827-8291850&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076715 AGAP011271-RA AGAP011271 A. gambiae AgamP4 AgamP4.2 chr3L:20419140-20419304 + 55 TGA-C TGA EOG7VTR42 FBgn0052000 CG32000-RI FBtr0333161 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:20419140-20419304&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011271-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr4:163422-163427&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333161 AGAP011378-RA AGAP011378 A. gambiae AgamP4 AgamP4.2 chr3L:22704946-22705914 + 323 TAG-C TAG Preliminary EOG75N6C5 FBgn0023095 caps-RA FBtr0075832 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:22704946-22705914&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011378-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:13270412-13271131&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075832 AGAP011379-RB AGAP011379 A. gambiae AgamP4 AgamP4.2 chr3L:22984394-22984396 + 1 TAG-T TAG Double 25 Double-Stop RNA Structure EOG70WDWJ FBgn0001085 fz-RA FBtr0075743 RT Yes No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:22984394-22984471&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011379-RB http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:14360381-14360473&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075743 AGAP011563-RA AGAP011563 A. gambiae AgamP4 AgamP4.2 chr3L:27773188-27773265 - 26 TGA-T TGA Preliminary EOG7S83Z7 FBgn0030183 CG15309-RE FBtr0332900 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:27773188-27773265&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011563-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:10101123-10101263&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332900 AGAP011694-RA AGAP011694 A. gambiae AgamP4 AgamP4.2 chr3L:31484371-31484400 + 10 TGA-C TGA Preliminary Double 47 EOG7Z0WD4 FBgn0031065 CG14234-RA FBtr0074790 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:31484371-31484541&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011694-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:19632417-19632440&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074790 AGAP011745-RA AGAP011745 A. gambiae AgamP4 AgamP4.2 chr3L:32840087-32840158 - 24 TGA-T TGA Preliminary Double 3 Triple 15 EOG7HFC1J FBgn0040238 Best1-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:32840033-32840158&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011745-RA AGAP011883-RA AGAP011883 A. gambiae AgamP4 AgamP4.2 chr3L:34626090-34626140 + 17 TAG-C TAA,TAG Preliminary EOG7RNWHD FBgn0035181 CG9205-RB FBtr0072622 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:34626090-34626140&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011883-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:1036222-1036281&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072622 AGAP011916-RA AGAP011916 A. gambiae AgamP4 AgamP4.2 chr3L:34979635-34979676 - 14 TAG-C TAG Preliminary RNA Structure EOG70D2Q1 No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:34979635-34979676&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011916-RA AGAP011935-RA AGAP011935 A. gambiae AgamP4 AgamP4.2 chr3L:35264366-35264497 - 44 TGA-G TGA Preliminary EOG73C5X3 FBgn0036851 CG14082-RC FBtr0330091 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:35264366-35264497&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011935-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:19100204-19100374&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330091 AGAP011956-RA AGAP011956 A. gambiae AgamP4 AgamP4.2 chr3L:35532242-35532316 - 25 TAA-T TAA EOG71W4B5 No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:35532242-35532316&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011956-RA AGAP011985-RA AGAP011985 A. gambiae AgamP4 AgamP4.2 chr3L:35881111-35881137 - 9 TGA-C TGA EOG7SJQNV FBgn0003900 twi-RC FBtr0345653 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:35881111-35881137&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011985-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:18935600-18935620&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0345653 AGAP011988-RF AGAP011988 A. gambiae AgamP4 AgamP4.2 chr3L:35903071-35903190+chr3L:35905437-35905475 - 53 TGA-C TGA Preliminary EOG7389N2 FBgn0261854 aPKC-RB FBtr0303429 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:35903071-35903190+chr3L:35905437-35905547+chr3L:35909678-35909695&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011988-RF http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:10833569-10833922+chr2R:10833982-10834108+chr2R:10834684-10834685&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0303429 AGAP011996-RA AGAP011996 A. gambiae AgamP4 AgamP4.2 chr3L:36028887-36029093 + 69 TGA-C TGA EOG783ZCC FBgn0039303 CG11857-RA FBtr0084814 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:36028709-36028723+chr3L:36028812-36029093&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011996-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:21085759-21085944&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084814 AGAP012018-RA AGAP012018 A. gambiae AgamP4 AgamP4.2 chr3L:36404211-36404249 + 13 TAG-G TAG Preliminary EOG7161N0 FBgn0037092 M6-RF FBtr0332715 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:36404211-36404249&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012018-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:21505048-21505101&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332715 AGAP012026-RA AGAP012026 A. gambiae AgamP4 AgamP4.2 chr3L:36647338-36647424 + 29 TAG-C TAG Preliminary EOG7F86RX FBgn0260798 Gprk1-RC FBtr0345363 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:36647338-36647424&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012026-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:210014-210037&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0345363 AGAP012085-RA AGAP012085 A. gambiae AgamP4 AgamP4.2 chr3L:37482772-37482900 - 43 TGA-C TGA EOG7XQ8P4 FBgn0020767 Spred-RA FBtr0087468 RT No Yes http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:37482772-37482900&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012085-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:10649265-10649543&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087468 AGAP012090-RA AGAP012090 A. gambiae AgamP4 AgamP4.2 chr3L:37578054-37578055+chr3L:37578140-37578296 + 53 TAA-T TAA Preliminary EOG7RZH5X FBgn0023081 gek-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:37578054-37578055+chr3L:37578140-37578296&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012090-RA AGAP012115-RA AGAP012115 A. gambiae AgamP4 AgamP4.2 chr3L:37774109-37774150 - 14 TGA-C TGA EOG78M9J1 FBgn0052451 SPoCk-RG FBtr0332105 RT Yes Ancient No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:37774109-37774150&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012115-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:22777588-22777632&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332105 AGAP012118-RA AGAP012118 A. gambiae AgamP4 AgamP4.2 chr3L:37832620-37832679 + 20 TGA-C TGA Preliminary EOG7M108N FBgn0031871 CG10158-RB FBtr0332325 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:37832620-37832679&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012118-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:6944046-6944048&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332325 AGAP012179-RA AGAP012179 A. gambiae AgamP4 AgamP4.2 chr3L:38353459-38353635 - 59 TAA-T TAA EOG79PW61 FBgn0004580 Cbp53E-RB FBtr0340072 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:38353459-38353635&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012179-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:12882063-12882143&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0340072 AGAP012186-RA AGAP012186 A. gambiae AgamP4 AgamP4.2 chr3L:38528175-38528249 + 25 TGA-A TGA EOG7B3C4N FBgn0265178 CG44243-RB FBtr0339087 Ambiguous No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:38528175-38528249&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012186-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:12086683-12086697&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0339087 AGAP012237-RA AGAP012237 A. gambiae AgamP4 AgamP4.2 chr3L:39209810-39209947 - 46 TGA-G TGA EOG74FRHC FBgn0036844 Mkp3-RB FBtr0075035 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:39209810-39209947&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012237-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:19061754-19062011&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075035 AGAP012288-RA AGAP012288 A. gambiae AgamP4 AgamP4.2 chr3L:39796269-39796412 - 48 TGA-C TGA Preliminary EOG7K4538 FBgn0015838 Vang-RA FBtr0088566 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:39796269-39796412&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012288-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:4992894-4992974&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088566 AGAP012325-RA AGAP012325 A. gambiae AgamP4 AgamP4.2 chr3L:40221503-40221550 + 16 TGA-T TGA Preliminary EOG7TV1S2 No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:40221503-40221550&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012325-RA AGAP012372-RA AGAP012372 A. gambiae AgamP4 AgamP4.2 chr3L:41151031-41151045 - 5 TGA-T TGA Preliminary Double 1 Triple 8 RNA Structure EOG76QS05 FBgn0053087 LRP1-RG FBtr0344894 Ambiguous No Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:41151004-41151045&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012372-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:4112921-4112923&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0344894 AGAP012565-RA AGAP012565 A. gambiae AgamP4 AgamP4.2 chrUNKN:16625393-16625887 + 165 TGA-C TGA EOG72RZH5 No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrUNKN:16624216-16624224+chrUNKN:16625312-16625887&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012565-RA AGAP012748-RA AGAP012748 A. gambiae AgamP4 AgamP4.2 chrUNKN:26692377-26692421 + 15 TAG-G TAG Preliminary RNA Structure EOG7JHXNZ FBgn0263916 Ent2-RB FBtr0343158 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrUNKN:26692377-26692421&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012748-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:6564074-6564088&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343158 AGAP012976-RA AGAP012976 A. gambiae AgamP4 AgamP4.2 chrX:9600985-9601194 - 70 TGA-C TGA Preliminary EOG7C32J9 FBgn0264954 fd3F-RC FBtr0335187 RT No Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:9600985-9601194&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012976-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:3704543-3704602&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0335187 AGAP012987-RA AGAP012987 A. gambiae AgamP4 AgamP4.2 chr2R:36943257-36943694 - 146 TGA-T TGA EOG725R1Z No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:36943257-36943694&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012987-RA AGAP013018-RA AGAP013018 A. gambiae AgamP4 AgamP4.2 chr2R:21598347-21598625 - 93 TGA-C TGA Preliminary Double 786 EOG75BKP4 FBgn0053096 CG33096-RG FBtr0344622 RT Yes Ancient Unbiased No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:21595989-21598709+chr2R:21598787-21598792&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013018-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:20924624-20924629+chr3R:20924918-20925182+chr3R:20925664-20925719&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0344622 AGAP013022-RA AGAP013022 A. gambiae AgamP4 AgamP4.2 chrX:14833564-14833662 - 33 TAG-C TAG Preliminary EOG7CP904 No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:14833564-14833662&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013022-RA AGAP013055-RA AGAP013055 A. gambiae AgamP4 AgamP4.2 chrX:9691786-9691788 - 1 TGA-T TGA Double 36 Double-Stop EOG7MWTDX FBgn0260938 tay-RA FBtr0074167 Non-RT No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:9691678-9691788&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013055-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:15771265-15771267&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074167 AGAP013108-RA AGAP013108 A. gambiae AgamP4 AgamP4.2 chr2R:5886155-5886157 - 1 TGA-T TGA Double 6 Double-Stop EOG7QGFP7 No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:5886137-5886157&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013108-RA AGAP013145-RB AGAP013145 A. gambiae AgamP4 AgamP4.2 chr2R:8660687-8660944 + 86 TGA-C TGA Preliminary EOG79H4Q8 FBgn0263995 cpo-RN No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:8660687-8660944&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013145-RB AGAP013174-RA AGAP013174 A. gambiae AgamP4 AgamP4.2 chr2R:20643044-20643124 - 27 TGA-T TGA Preliminary EOG74812H FBgn0066303 CG33932-RB FBtr0346041 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:20643044-20643124&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013174-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:19639587-19639604&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0346041 AGAP013210-RA AGAP013210 A. gambiae AgamP4 AgamP4.2 chrX:8255651-8255689 + 13 TGA-G TGA EOG7V4NGB FBgn0030174 CG15312-RE FBtr0309220 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:8255651-8255689&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013210-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:9951269-9951328&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0309220 AGAP013378-RA AGAP013378 A. gambiae AgamP4 AgamP4.2 chr2R:27062356-27062358 - 1 TGA-T TGA Double 15 Double-Stop EOG7X9SRF FBgn0083971 CG34135-RB FBtr0110905 RT Yes No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:27062311-27062358&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013378-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:4575963-4576154&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0110905 AGAP013455-RA AGAP013455 A. gambiae AgamP4 AgamP4.2 chr2R:42781056-42781136 + 27 TAG-C TAG Preliminary EOG7K453F FBgn0041188 Atx2-RD FBtr0344377 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:42781056-42781136&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013455-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:11241275-11241364&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0344377 AGAP013461-RA AGAP013461 A. gambiae AgamP4 AgamP4.2 chr2R:57866592-57866612 + 7 TAA-G TAA EOG7RRRQQ No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:57866592-57866612&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013461-RA AGAP013495-RA AGAP013495 A. gambiae AgamP4 AgamP4.2 chrX:17555750-17555926 - 59 TGA-G TGA EOG74FRH3 FBgn0030974 CG7358-RB FBtr0342879 Non-RT No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:17555750-17555926&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013495-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:18783206-18783325&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0342879 AGAP013538-RA AGAP013538 A. gambiae AgamP4 AgamP4.2 chr2R:24285873-24285875 + 1 TAG-T TAG Double 18 Double-Stop EOG7B67DB FBgn0043900 pygo-RA FBtr0085806 Non-RT No http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:24285873-24285929&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013538-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:27402494-27402613&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085806 AGAP013747-RA AGAP013747 A. gambiae AgamP4 AgamP4.2 chr3R:4021843-4021890 - 16 TGA-C TGA Preliminary RNA Structure EOG7HXQ81 FBgn0040228 dyn-p25-RA FBtr0080693 Non-RT No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:4021843-4021890&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013747-RA http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:15006540-15006605&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0080693 AGAP027982-RA AGAP027982 A. gambiae AgamP4 AgamP4.2 chr3L:1333593-1333667 - 25 TGA-C TGA Preliminary EOG7MHBGG No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:1333593-1333667&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP027982-RA AGAP027996-RA AGAP027996 A. gambiae AgamP4 AgamP4.2 chr3R:21544689-21544862 - 58 TGA-C TGA EOG7XMDF8 No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:21544689-21544862&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP027996-RA AGAP028090-RA AGAP028090 A. gambiae AgamP4 AgamP4.2 chr3R:22315062-22315112 - 17 TGA-C TGA Preliminary EOG73G243 FBgn0033183 CG1620-RA No Comparison Unbiased http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:22315062-22315156+chr3R:22315427-22315472&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP028090-RA AGAP028130-RA AGAP028130 A. gambiae AgamP4 AgamP4.2 chr3L:35742536-35742856 - 107 TGA-C TGA Double 41 EOG76B92S FBgn0052204 CG32204-RB No Comparison http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:35742413-35742943+chr3L:35743025-35743027&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP028130-RA FBtr0070181 FBgn0040397 CG3655-RA D. melanogaster dm3 dmel_r5.57 chrX:969437-969535 - 33 TGA-T TGA Preliminary EOG7BWB1M AGAP001806 AGAP001806-RA RT Yes Ancient Unbiased No FBtr0070181 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:969437-969535&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0070181 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:10784790-10784843&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001806-RA FBtr0070244 FBgn0028550 Atf3-RA D. melanogaster dm3 dmel_r5.57 chrX:1140323-1140547 - 75 TGA-G TGA Preliminary EOG7DK440 AGAP001536 AGAP001536-RA RT Yes Ancient Unbiased No FBtr0070244 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:1140323-1140547&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0070244 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:6034372-6034392&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001536-RA FBtr0070261 FBgn0000210 br-RC D. melanogaster dm3 dmel_r5.57 chrX:1542747-1543139 + 131 TAA-G TAA Preliminary EOG7G25PT AGAP002165 No Comparison Unbiased FBtr0070261 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:1542747-1543139&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0070261 FBtr0070435 FBgn0004050 z-RA D. melanogaster dm3 dmel_r5.57 chrX:2344241-2344330 + 30 TGA-G TGA Preliminary EOG7B67CR No Comparison Unbiased FBtr0070435 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:2344241-2344330&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0070435 FBtr0070672 FBgn0000179 bi-RA D. melanogaster dm3 dmel_r5.57 chrX:4377659-4377811 + 51 TGA-C TGA Preliminary EOG7J79Z2 AGAP011711 No Comparison Unbiased FBtr0070672 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:4377659-4377811&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0070672 FBtr0070691 FBgn0011277 HLH4C-RA D. melanogaster dm3 dmel_r5.57 chrX:4539825-4539896 - 24 TGA-G TGA Preliminary EOG72ZPZM AGAP004907 AGAP004907-RA Non-RT No Comparison Unbiased FBtr0070691 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:4539825-4539896&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0070691 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:5801761-5801775&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004907-RA FBtr0070704 FBgn0011760 ctp-RB D. melanogaster dm3 dmel_r5.57 chrX:4592492-4593025 + 178 TAA-A TAA Preliminary EOG7VQVXK AGAP001335 AGAP001335-RA Ambiguous No Unbiased FBtr0070704 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:4592492-4593025&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0070704 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:3281793-3281807&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001335-RA FBtr0071185 FBgn0030017 CG2278-RA D. melanogaster dm3 dmel_r5.57 chrX:8061822-8061986 - 55 TAG-C TAG Preliminary EOG7NWHSS AGAP002709 AGAP002709-RA RT Yes Ancient Unbiased No FBtr0071185 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:8061822-8061986&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071185 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:26001206-26001232&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002709-RA FBtr0071381 FBgn0020378 Sp1-RB D. melanogaster dm3 dmel_r5.57 chrX:9649303-9649335 + 11 TGA-G TGA Preliminary EOG7GZ0V3 AGAP000673 AGAP000673-RA Ambiguous No Unbiased FBtr0071381 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:9649303-9649335&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071381 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:11918350-11918460&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000673-RA FBtr0071446 FBgn0000711 flw-RA D. melanogaster dm3 dmel_r5.57 chrX:10301513-10301539 + 9 TAA-T TAA EOG7DZM2H AGAP003114 AGAP003114-RA RT Yes Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:10301513-10301539&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071446 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:32550719-32551714&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003114-RA FBtr0071609 FBgn0034626 CG10795-RA D. melanogaster dm3 dmel_r5.57 chr2R:17270991-17271065 - 25 TGA-T TGA EOG7V1S7R AGAP007485 AGAP007485-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:17270991-17271065&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071609 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:46858480-46858530&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007485-RA FBtr0071622 FBgn0034606 ASPP-RA D. melanogaster dm3 dmel_r5.57 chr2R:17106377-17106454 - 26 TAG-C TAG Preliminary EOG72VTPC AGAP012439 No Comparison Unbiased FBtr0071622 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:17106377-17106499+chr2R:17106604-17106648&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071622 FBtr0071632 FBgn0050389 CG30389-RA D. melanogaster dm3 dmel_r5.57 chr2R:17036759-17036845 - 29 TGA-C TGA Preliminary EOG77X6VQ AGAP010611 No Comparison Unbiased FBtr0071632 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:17036759-17036845&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071632 FBtr0071660 FBgn0034643 CG10321-RA D. melanogaster dm3 dmel_r5.57 chr2R:17525417-17525476 + 20 TAG-C TAG Preliminary EOG725R1B AGAP004729 No Comparison Unbiased FBtr0071660 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:17525417-17525476&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071660 FBtr0071837 FBgn0260866 dnr1-RA D. melanogaster dm3 dmel_r5.57 chr2R:18451565-18451624 - 20 TAG-A TAG Preliminary EOG7BKQ9Z AGAP001609 AGAP001609-RA Non-RT No Comparison Unbiased FBtr0071837 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:18451565-18451624&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071837 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:6777119-6777142&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001609-RA FBtr0071924 FBgn0020257 ppa-RA D. melanogaster dm3 dmel_r5.57 chr2R:18574538-18574609 - 24 TGA-T TGA Preliminary EOG7M3VGP AGAP010289 AGAP010289-RA Ambiguous No Unbiased FBtr0071924 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:18574538-18574609&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0071924 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:52212059-52212076&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010289-RA FBtr0072148 FBgn0029105 alpha-catenin-related-RA D. melanogaster dm3 dmel_r5.57 chr2R:19848860-19848928 + 23 TGA-C TGA Preliminary EOG7135CG AGAP011097 AGAP011097-RA RT No Unbiased No FBtr0072148 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:19848860-19848928&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072148 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:16798569-16798640&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011097-RA FBtr0072290 FBgn0002787 Rpn8-RA D. melanogaster dm3 dmel_r5.57 chr2R:20291797-20291856 + 20 TAG-G TAG Preliminary EOG7N6F4G AGAP012135 AGAP012135-RA Non-RT No Comparison Unbiased FBtr0072290 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:20291797-20291856&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072290 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:37999312-37999395&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012135-RA FBtr0072298 FBgn0035010 CG13579-RA D. melanogaster dm3 dmel_r5.57 chr2R:20376971-20377168 + 66 TAG-T TAG Preliminary EOG7B67C6 AGAP011320 No Comparison Unbiased FBtr0072298 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:20376971-20377168&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072298 FBtr0072457 FBgn0266129 lov-RB D. melanogaster dm3 dmel_r5.57 chr2R:20974140-20974430 - 97 TGA-A TGA Preliminary EOG72K6ZV AGAP010355 AGAP010355-RA RT Yes Ancient Unbiased No FBtr0072456 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:20974140-20974430&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072457 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:2111321-2111365&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010355-RA FBtr0072577 FBgn0035155 RabX6-RA D. melanogaster dm3 dmel_r5.57 chr3L:691411-691437 + 9 TAG-C TAG Preliminary RNA Structure EOG7XDNZW AGAP009325 AGAP009325-RA Non-RT No Comparison Unbiased FBtr0072577 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:691411-691437&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072577 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:31271633-31271680&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009325-RA FBtr0072758 FBgn0013753 Bgb-RA D. melanogaster dm3 dmel_r5.57 chr3L:1640637-1640756 + 40 TAG-T TAG Preliminary RNA Structure EOG786TM9 AGAP000317 AGAP000317-RA Non-RT No Comparison Unbiased FBtr0072758 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:1640637-1640756&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072758 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:5609943-5610065&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000317-RA FBtr0072887 FBgn0035331 MsR1-RA D. melanogaster dm3 dmel_r5.57 chr3L:2344118-2344351 + 78 TAG-C TAG Preliminary EOG70SJNX AGAP005229 AGAP005229-RA RT No Unbiased No FBtr0072887 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:2344118-2344351&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0072887 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:12549161-12549283&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005229-RA FBtr0073131 FBgn0005640 Eip63E-RD D. melanogaster dm3 dmel_r5.57 chr3L:3607567-3607614 + 16 TGA-A TGA Preliminary EOG793NQX AGAP005729 AGAP005729-RA RT No Unbiased No FBtr0073131 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:3600467-3600491+chr3L:3607502-3607614&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073131 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:19791460-19791581+chr2L:19791665-19791680&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005729-RA FBtr0073156 FBgn0013751 Awh-RB D. melanogaster dm3 dmel_r5.57 chr3L:3860953-3860988 + 12 TGA-C TGA Preliminary EOG7M108G AGAP006540 AGAP006540-RA Non-RT No Comparison Unbiased FBtr0073156 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:3860734-3860761+chr3L:3860891-3860988&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073156 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:34075775-34075802+chr2L:34075873-34076021&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006540-RA FBtr0073158 FBgn0035469 CG14977-RA D. melanogaster dm3 dmel_r5.57 chr3L:3897356-3897487 + 44 TGA-A TGA Preliminary EOG75R2NQ AGAP006683 AGAP006683-RC Non-RT No Comparison Unbiased FBtr0073158 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:3897356-3897487&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073158 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:36681036-36681065&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006683-RC FBtr0073279 FBgn0024179 wit-RA D. melanogaster dm3 dmel_r5.57 chr3L:4065214-4065243 - 10 TAG-C TAG Preliminary RNA Structure EOG767DST AGAP005567 AGAP005567-RA RT No Unbiased No FBtr0073279 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:4065214-4065243&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073279 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:17316196-17316225&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005567-RA FBtr0073293 FBgn0035540 Syx17-RA D. melanogaster dm3 dmel_r5.57 chr3L:4404849-4404983 + 45 TGA-C TGA Preliminary EOG7XHJ74 AGAP005684 AGAP005684-RA RT No Unbiased No FBtr0073293 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:4404849-4404983&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073293 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:18745920-18745949&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005684-RA FBtr0073437 FBgn0030269 CG18292-RA D. melanogaster dm3 dmel_r5.57 chrX:11032936-11032977 + 14 TGA-G TGA Preliminary EOG7VTR5Q AGAP002837 AGAP002837-RA Non-RT No Comparison Unbiased FBtr0073437 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:11032936-11032977&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073437 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:28201977-28202135&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002837-RA FBtr0073485 FBgn0001624 dlg1-RD D. melanogaster dm3 dmel_r5.57 chrX:11300212-11300334 + 41 TGA-C TGA Preliminary EOG7DRVK5 AGAP000255 No Comparison Unbiased FBtr0073485 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:11300212-11300334&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073485 FBtr0073522 FBgn0004370 Ptp10D-RB D. melanogaster dm3 dmel_r5.57 chrX:11568015-11569059+chrX:11569364-11569395 + 359 TGA-C TGA Preliminary RNA Structure EOG7FVF68 AGAP004246 No Comparison Unbiased FBtr0073522 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:11568015-11569059+chrX:11569364-11569395&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073522 FBtr0073567 FBgn0030345 CG1847-RA D. melanogaster dm3 dmel_r5.57 chrX:11764466-11764531 + 22 TAG-A TAG Preliminary EOG7BGV3N AGAP011684 AGAP011684-RA Ambiguous No Unbiased FBtr0073567 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:11764466-11764531&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073567 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:31357682-31357741&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011684-RA FBtr0073731 FBgn0004456 mew-RA D. melanogaster dm3 dmel_r5.57 chrX:13109359-13109649 - 97 TAA-C TAA Preliminary EOG7FFZ7N AGAP000307 AGAP000307-RA Non-RT No Comparison Unbiased FBtr0073731 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:13109359-13109649&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073731 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:5433168-5433338&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000307-RA FBtr0073747 FBgn0010303 hep-RA D. melanogaster dm3 dmel_r5.57 chrX:12974435-12974461 - 9 TGA-G TGA Preliminary EOG7VF85G AGAP001867 AGAP001867-RA RT Yes Ancient Unbiased No FBtr0073749 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:12974435-12974461&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073747 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:11698495-11698545&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001867-RA FBtr0073803 FBgn0086674 Tango13-RB D. melanogaster dm3 dmel_r5.57 chrX:13484408-13484449 + 14 TGA-T TGA Preliminary EOG732K5J AGAP000900 No Comparison Unbiased FBtr0073803 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:13484408-13484449&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0073803 FBtr0074008 FBgn0026428 HDAC6-RA D. melanogaster dm3 dmel_r5.57 chrX:15234049-15234201 + 51 TGA-C TGA Preliminary EOG7MM6P2 AGAP000532 AGAP000532-RA RT No Unbiased No FBtr0074008 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:15234049-15234201&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074008 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:9504470-9504553&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000532-RA FBtr0074026 FBgn0030617 CG9095-RA D. melanogaster dm3 dmel_r5.57 chrX:15035283-15035321 - 13 TGA-C TGA Preliminary EOG7HXQ6W AGAP000123 AGAP000123-RA RT Yes Ancient Unbiased No FBtr0074026 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:15035283-15035321&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074026 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:2014166-2014255&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000123-RA FBtr0074289 FBgn0030761 CG9784-RA D. melanogaster dm3 dmel_r5.57 chrX:16490716-16490748 - 11 TAG-C TAG Preliminary EOG7BWB1V AGAP011644 AGAP011644-RA Ambiguous No Unbiased FBtr0074289 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:16490716-16490748&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074289 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:30654686-30654706&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011644-RA FBtr0074298 FBgn0264255 para-RA D. melanogaster dm3 dmel_r5.57 chrX:16357779-16357820 - 14 TGA-G TGA Preliminary EOG79SRD3 AGAP004707 AGAP004707-RA RT Yes Ancient Unbiased No FBtr0074298 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:16357779-16357820&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074298 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:2431618-2431671&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004707-RA FBtr0074412 FBgn0030812 CG8949-RA D. melanogaster dm3 dmel_r5.57 chrX:16964308-16964385 - 26 TAG-G TAG Preliminary EOG7HFC1Q AGAP004686 No Comparison Unbiased FBtr0074412 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:16964308-16964464+chrX:16964534-16964544&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074412 FBtr0074510 FBgn0030891 dik-RA D. melanogaster dm3 dmel_r5.57 chrX:17981616-17981711 + 32 TAG-G TAG Preliminary RNA Structure EOG7X427K AGAP010459 No Comparison Unbiased FBtr0074510 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:17981616-17981711&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074510 FBtr0074668 FBgn0030992 CG33253-RA D. melanogaster dm3 dmel_r5.57 chrX:19080807-19080947 + 47 TGA-C TGA Preliminary EOG757QFC AGAP003352 AGAP003352-RC Ambiguous No Unbiased FBtr0074668 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:19080807-19080947&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074668 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:36483827-36484081&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003352-RC FBtr0074727 FBgn0000257 car-RB D. melanogaster dm3 dmel_r5.57 chrX:19462351-19462416 + 22 TGA-G TGA Preliminary EOG7F5BJ6 AGAP003203 AGAP003203-RA Non-RT No Comparison Unbiased FBtr0074727 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:19462351-19462416&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074727 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:33813270-33813278&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003203-RA FBtr0074790 FBgn0031065 CG14234-RA D. melanogaster dm3 dmel_r5.57 chrX:19632417-19632440 + 8 TAA-C TAA EOG7Z0WD4 AGAP011694 AGAP011694-RA RT No Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:19632417-19632440&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0074790 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:31484371-31484541&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011694-RA FBtr0075028 FBgn0016797 fz2-RB D. melanogaster dm3 dmel_r5.57 chr3L:19136966-19137301 - 112 TGA-C TGA Preliminary EOG79WMN9 AGAP010442 AGAP010442-RA RT Yes Ancient Unbiased No FBtr0075028 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:19136966-19137301&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075028 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:3726304-3726501&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010442-RA FBtr0075035 FBgn0036844 Mkp3-RB D. melanogaster dm3 dmel_r5.57 chr3L:19061754-19062011 - 86 TGA-G TGA Preliminary EOG74FRHC AGAP012237 AGAP012237-RA RT Yes Ancient Unbiased No FBtr0075035 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:19061754-19062011&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075035 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:39209810-39209947&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012237-RA FBtr0075196 FBgn0036746 Crtc-RA D. melanogaster dm3 dmel_r5.57 chr3L:17655050-17655325 - 92 TGA-T TGA Preliminary EOG7SJQNN No Comparison Unbiased FBtr0075196 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:17655050-17655325&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075196 FBtr0075318 FBgn0000414 Dab-RA D. melanogaster dm3 dmel_r5.57 chr3L:16716442-16716849 + 136 TGA-T TGA Preliminary EOG7CCP71 AGAP006528 AGAP006528-RA RT Yes Ancient Unbiased No FBtr0075318 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:16716442-16716849&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075318 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:33920822-33921007&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006528-RA FBtr0075327 FBgn0036662 CG9706-RB D. melanogaster dm3 dmel_r5.57 chr3L:16778152-16778166 + 5 TAG-C TAG EOG77DVP9 AGAP006943 AGAP006943-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:16778152-16778166&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075327 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:40190483-40190503&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006943-RA FBtr0075393 FBgn0262732 mbf1-RA D. melanogaster dm3 dmel_r5.57 chr3L:16568970-16569098 + 43 TGA-A TGA Preliminary EOG77HQZ3 AGAP004990 AGAP004990-RA RT Yes Ancient Unbiased No FBtr0075393 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:16568970-16569098&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075393 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:7586855-7586872&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004990-RA FBtr0075518 FBgn0259824 Hip14-RA D. melanogaster dm3 dmel_r5.57 chr3L:15983958-15984011 + 18 TAG-G TAG Preliminary EOG72P368 AGAP011732 AGAP011732-RA Non-RT No Comparison Unbiased FBtr0075518 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:15983958-15984011&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075518 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:32628256-32628495&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011732-RA FBtr0075523 FBgn0000212 brm-RC D. melanogaster dm3 dmel_r5.57 chr3L:15963417-15963476 - 20 TAG-C TAG Preliminary EOG75JB42 AGAP010462 AGAP010462-RA Non-RT No Comparison Unbiased FBtr0075523 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:15963417-15963476&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075523 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:3936363-3936482&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010462-RA FBtr0075553 FBgn0000565 Eip71CD-RA D. melanogaster dm3 dmel_r5.57 chr3L:15506131-15506175 + 15 TGA-C TGA Preliminary EOG75N6D5 AGAP012394 AGAP012394-RA Non-RT No Comparison Unbiased FBtr0075553 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:15506131-15506175&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075553 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:41710252-41710272&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012394-RA FBtr0075743 FBgn0001085 fz-RA D. melanogaster dm3 dmel_r5.57 chr3L:14360381-14360473 + 31 TAG-T TAG Preliminary EOG70WDWJ AGAP011379 AGAP011379-RB RT Yes Ancient Unbiased No FBtr0075743 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:14360381-14360473&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075743 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:22984394-22984471&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011379-RB FBtr0075747 FBgn0042630 Sox21b-RA D. melanogaster dm3 dmel_r5.57 chr3L:14106076-14106123 - 16 TGA-C TGA Preliminary EOG72GBRC AGAP010922 No Comparison Unbiased FBtr0075747 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:14106076-14106123&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075747 FBtr0075748 FBgn0036411 Sox21a-RA D. melanogaster dm3 dmel_r5.57 chr3L:14097297-14097353 - 19 TGA-C TGA Preliminary EOG7WQK9K No Comparison Unbiased FBtr0075748 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:14097297-14097353&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075748 FBtr0075793 FBgn0026376 Rgl-RA D. melanogaster dm3 dmel_r5.57 chr3L:13900867-13900923 - 19 TAG-T TAG Preliminary RNA Structure EOG725R0M AGAP010782 AGAP010782-RA Non-RT No Comparison Unbiased FBtr0075793 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:13900867-13900923&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075793 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:10284010-10284309&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010782-RA FBtr0075832 FBgn0023095 caps-RA D. melanogaster dm3 dmel_r5.57 chr3L:13270412-13271131 + 240 TAG-C TAG Preliminary EOG75N6C5 AGAP011378 AGAP011378-RA RT Yes Ancient Unbiased No FBtr0075832 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:13270412-13271131&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075832 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:22704946-22705914&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011378-RA FBtr0075890 FBgn0010452 trn-RA D. melanogaster dm3 dmel_r5.57 chr3L:13110612-13110653 + 14 TGA-T TGA Preliminary RNA Structure EOG75N6C5 AGAP011378 AGAP011378-RA RT No Unbiased No FBtr0075890 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:13110612-13110653&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075890 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:22704946-22705914&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011378-RA FBtr0075911 FBgn0014343 mirr-RA D. melanogaster dm3 dmel_r5.57 chr3L:12702057-12702179 + 41 TGA-C TGA Preliminary EOG7R5J91 AGAP005011 AGAP005011-RA RT Yes Ancient Unbiased No FBtr0075911 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:12702057-12702179&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0075911 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:8136323-8136340&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005011-RA FBtr0076247 FBgn0013469 klu-RA D. melanogaster dm3 dmel_r5.57 chr3L:10975545-10975589 - 15 TAA-C TAA Preliminary EOG78WX89 AGAP009899 AGAP009899-RA Non-RT No Comparison Unbiased FBtr0076247 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:10975545-10975589&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076247 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:45090089-45090142&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009899-RA FBtr0076367 FBgn0004390 RasGAP1-RA D. melanogaster dm3 dmel_r5.57 chr3L:9833608-9833661 - 18 TAG-C TAG Preliminary RNA Structure EOG7V7HPH AGAP002261 AGAP002261-RA Non-RT No Comparison Unbiased FBtr0076367 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:9833608-9833661&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076367 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:18263084-18263194&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002261-RA FBtr0076396 FBgn0036032 CG16711-RB D. melanogaster dm3 dmel_r5.57 chr3L:9701702-9702433 + 244 TGA-C TGA Preliminary EOG754V6R No Comparison Unbiased FBtr0076396 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:9701543-9701568+chr3L:9701638-9702433&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076396 FBtr0076398 FBgn0045823 vsg-RA D. melanogaster dm3 dmel_r5.57 chr3L:9709323-9709562 + 80 TGA-G TGA Preliminary EOG7S57QQ AGAP010727 AGAP010727-RA Non-RT No Comparison Unbiased FBtr0076398 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:9709323-9709562&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076398 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:9005838-9005930&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010727-RA FBtr0076636 FBgn0035914 CG6282-RA D. melanogaster dm3 dmel_r5.57 chr3L:8608512-8609000 + 163 TAG-C TAG Preliminary RNA Structure EOG74Z3Q8 AGAP005737 AGAP005737-RA RT Yes Ancient Unbiased No FBtr0076636 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:8608512-8609000&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076636 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:20024721-20025203&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005737-RA FBtr0076809 FBgn0035816 CG13685-RA D. melanogaster dm3 dmel_r5.57 chr3L:7741467-7741604 + 46 TAG-A TAG Preliminary EOG7W1GN0 No Comparison Unbiased FBtr0076809 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:7741467-7741604&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076809 FBtr0076944 FBgn0086680 vvl-RA D. melanogaster dm3 dmel_r5.57 chr3L:6785210-6786067 + 286 TAG-C TAG Preliminary RNA Structure EOG764JK9 AGAP005878 AGAP005878-RA RT Yes Ancient Unbiased No FBtr0076944 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:6785210-6786067&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076944 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:23058812-23059411&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005878-RA FBtr0076978 FBgn0035708 CG8398-RA D. melanogaster dm3 dmel_r5.57 chr3L:6611095-6611229 + 45 TGA-T TGA Preliminary EOG7ZH7M1 AGAP005408 AGAP005408-RA RT Yes Ancient Unbiased No FBtr0076978 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:6611095-6611229&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0076978 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:15189310-15189324&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005408-RA FBtr0077027 FBgn0035643 CG13287-RA D. melanogaster dm3 dmel_r5.57 chr3L:5876893-5876919 + 9 TGA-T TGA Preliminary EOG78134C AGAP007109 AGAP007109-RA Non-RT No Comparison Unbiased FBtr0077027 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:5876893-5876919&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0077027 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:42860611-42860664&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007109-RA FBtr0077164 FBgn0035593 CG4603-RA D. melanogaster dm3 dmel_r5.57 chr3L:5128535-5128606 + 24 TAA-T TAA Preliminary EOG7MM6PS AGAP007001 AGAP007001-RA Non-RT No Comparison Unbiased FBtr0077164 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:5128535-5128606&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0077164 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:40590702-40590938&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007001-RA FBtr0077637 FBgn0010263 Rbp9-RB D. melanogaster dm3 dmel_r5.57 chr2L:2963387-2964121 + 245 TAA-T TAA Preliminary EOG7N3JWC AGAP009952 AGAP009952-RA RT No Unbiased No FBtr0077637 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:2963387-2964121&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0077637 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:46166464-46166757&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009952-RA FBtr0077662 FBgn0015600 toc-RA D. melanogaster dm3 dmel_r5.57 chr2L:3069570-3069713 - 48 TGA-C TGA Preliminary EOG7JTJCJ AGAP008554 No Comparison Unbiased FBtr0077662 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:3069570-3069713&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0077662 FBtr0077810 FBgn0262126 Sec24CD-RA D. melanogaster dm3 dmel_r5.57 chr2L:2231934-2232047 - 38 TAG-C TAG Preliminary EOG7RG50D AGAP008803 AGAP008803-RA RT Yes Ancient Unbiased No FBtr0077810 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:2231934-2232047&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0077810 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:18057920-18058549&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008803-RA FBtr0077870 FBgn0031375 erm-RA D. melanogaster dm3 dmel_r5.57 chr2L:1950927-1951055 - 43 TGA-C TGA Preliminary Double 44 EOG751ZZF AGAP009286 AGAP009286-RA RT Yes Ancient Unbiased No FBtr0077870 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:1950795-1951055&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0077870 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:30818488-30818616&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009286-RA FBtr0077877 FBgn0086758 chinmo-RD D. melanogaster dm3 dmel_r5.57 chr2L:1696150-1696857 + 236 TAG-G TAG Preliminary EOG703G0G AGAP008959 AGAP008959-RA Non-RT No Comparison Unbiased FBtr0077877 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:1696150-1696857&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0077877 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:22025262-22025285&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008959-RA FBtr0077941 FBgn0002543 lea-RA D. melanogaster dm3 dmel_r5.57 chr2L:1381444-1381611 - 56 TGA-C TGA Preliminary EOG7NPS98 AGAP010245 AGAP010245-RA Non-RT No Comparison Unbiased FBtr0077941 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:1381444-1381611&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0077941 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:51542852-51542863&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010245-RA FBtr0077942 FBgn0053126 NLaz-RA D. melanogaster dm3 dmel_r5.57 chr2L:1360084-1360146 - 21 TGA-G TGA Preliminary EOG7V1S7Q AGAP009281 AGAP009281-RA Non-RT No Comparison Unbiased FBtr0077942 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:1360084-1360146&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0077942 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:30581859-30581870&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009281-RA FBtr0078063 FBgn0003963 ush-RA D. melanogaster dm3 dmel_r5.57 chr2L:539957-540019 + 21 TGA-G TGA Preliminary EOG783ZBC AGAP009066 AGAP009066-RA Non-RT No Comparison Unbiased FBtr0078063 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:539957-540019&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0078063 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:25396448-25396597&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009066-RA FBtr0078185 FBgn0036980 RhoBTB-RA D. melanogaster dm3 dmel_r5.57 chr3L:20374799-20374821+chr3L:20374892-20374982 + 38 TGA-C TGA Preliminary EOG754V5M AGAP006474 AGAP006474-RA RT Yes Ancient Unbiased No FBtr0078185 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:20374799-20374821+chr3L:20374892-20374982&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0078185 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:32674673-32674695+chr2L:32674763-32674892&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006474-RA FBtr0078348 FBgn0005694 Aef1-RA D. melanogaster dm3 dmel_r5.57 chr3L:21429310-21429747 + 146 TGA-C TGA Preliminary EOG7K71C4 No Comparison Unbiased FBtr0078348 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:21429310-21429747&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0078348 FBtr0078426 FBgn0052446 Atox1-RA D. melanogaster dm3 dmel_r5.57 chr3L:21635208-21635261 + 18 TGA-G TGA Preliminary EOG7VQVXS AGAP012028 AGAP012028-RA Non-RT No Comparison Unbiased FBtr0078426 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:21635208-21635261&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0078426 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:36687989-36688018&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012028-RA FBtr0078509 FBgn0004449 Ten-m-RB D. melanogaster dm3 dmel_r5.57 chr3L:22288532-22288687 - 52 TGA-G TGA Preliminary EOG7T4Z21 AGAP011034 No Comparison Unbiased FBtr0078509 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:22288532-22288687&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0078509 FBtr0078582 FBgn0027339 jim-RC D. melanogaster dm3 dmel_r5.57 chr3L:22790658-22791011 - 118 TGA-C TGA Preliminary EOG73NSKR AGAP011544 No Comparison Unbiased FBtr0078581 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:22790658-22791011&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0078582 FBtr0078957 FBgn0261086 Syt14-RA D. melanogaster dm3 dmel_r5.57 chr3R:141659-141844 - 62 TGA-T TGA Preliminary RNA Structure EOG7W1GM4 AGAP000430 AGAP000430-RA RT Yes Ancient Unbiased No FBtr0078957 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:141659-141844&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0078957 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:7646480-7646485&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000430-RA FBtr0079019 FBgn0031683 CG4230-RA D. melanogaster dm3 dmel_r5.57 chr2L:5098385-5098573 + 63 TGA-C TGA Preliminary EOG7KQCJK AGAP009073 AGAP009073-RA RT Yes Ancient Unbiased No FBtr0079019 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:5098385-5098573&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079019 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:25422323-25422946&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009073-RA FBtr0079094 FBgn0031707 CG14020-RA D. melanogaster dm3 dmel_r5.57 chr2L:5518823-5518873 + 17 TGA-C TGA Preliminary EOG7RK181 AGAP008571 AGAP008571-RA Non-RT No Comparison Unbiased FBtr0079094 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:5518823-5518873&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079094 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:13081312-13081470&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008571-RA FBtr0079272 FBgn0031814 retm-RA D. melanogaster dm3 dmel_r5.57 chr2L:6449708-6449851 - 48 TGA-T TGA Preliminary EOG7HFC1G AGAP009029 AGAP009029-RA Non-RT No Comparison Unbiased FBtr0079272 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:6449708-6449851&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079272 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:24334527-24334529&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009029-RA FBtr0079300 FBgn0046704 Liprin-alpha-RA D. melanogaster dm3 dmel_r5.57 chr2L:6730689-6730727 + 13 TGA-T TGA Preliminary RNA Structure EOG783ZB8 AGAP001469 AGAP001469-RA Ambiguous No Unbiased FBtr0079300 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:6730689-6730727&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079300 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:5350601-5350603+chr2R:5350696-5350815&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001469-RA FBtr0079306 FBgn0025777 homer-RA D. melanogaster dm3 dmel_r5.57 chr2L:6720559-6720942+chr2L:6720997-6721023 - 137 TGA-G TGA EOG77HQXP AGAP010076 AGAP010076-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:6720559-6720942+chr2L:6720997-6721023&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079306 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:48628995-48629636&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010076-RA FBtr0079544 FBgn0013531 MED20-RA D. melanogaster dm3 dmel_r5.57 chr2L:8071955-8072002 - 16 TGA-T TGA Preliminary EOG7P64HZ AGAP005604 AGAP005604-RA Non-RT No Comparison Unbiased FBtr0079544 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:8071955-8072002&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079544 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:17804285-17804290&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005604-RA FBtr0079597 FBgn0032013 Scgalpha-RA D. melanogaster dm3 dmel_r5.57 chr2L:8305164-8305193 + 10 TGA-C TGA Preliminary EOG7C8T0N AGAP007686 AGAP007686-RA RT No Unbiased No FBtr0079597 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:8305164-8305193&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079597 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:49055349-49055381&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007686-RA FBtr0079691 FBgn0011259 Sema-1a-RA D. melanogaster dm3 dmel_r5.57 chr2L:8666212-8666889 + 226 TGA-T TGA Preliminary EOG771CQ3 AGAP008656 AGAP008656-RA RT Yes Ancient Unbiased No FBtr0079691 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:8666212-8666889&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079691 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:14277282-14278340&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008656-RA FBtr0079771 FBgn0052982 CG32982-RA D. melanogaster dm3 dmel_r5.57 chr2L:9163450-9163464 + 5 TAG-C TAG Preliminary EOG7TFJSW AGAP009666 No Comparison Unbiased FBtr0079771 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:9163450-9163464&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079771 FBtr0079890 FBgn0032172 CG5850-RA D. melanogaster dm3 dmel_r5.57 chr2L:9961004-9961354 - 117 TGA-C TGA Preliminary EOG75JB4P AGAP008048 AGAP008048-RA Ambiguous No Unbiased FBtr0079890 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:9961004-9961354&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079890 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:4857580-4857720&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008048-RA FBtr0079929 FBgn0000180 bib-RA D. melanogaster dm3 dmel_r5.57 chr2L:9994659-9994781 + 41 TGA-A TGA Preliminary EOG7KDRT9 AGAP008766 AGAP008766-RA Non-RT No Comparison Unbiased FBtr0079929 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:9994659-9994781&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0079929 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:17333646-17333684&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008766-RA FBtr0080148 FBgn0041781 SCAR-RA D. melanogaster dm3 dmel_r5.57 chr2L:10981666-10981722 + 19 TGA-T TGA Preliminary EOG7JXDMX AGAP008518 AGAP008518-RA RT Yes Ancient Unbiased No FBtr0080148 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:10981666-10981722&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0080148 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:11748110-11748154&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008518-RA FBtr0080362 FBgn0029137 Patsas-RA D. melanogaster dm3 dmel_r5.57 chr2L:12101236-12101247 - 4 TGA-T TGA EOG76QS0J AGAP008928 AGAP008928-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:12101236-12101247&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0080362 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:21099032-21099106&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008928-RA FBtr0080397 FBgn0032451 spict-RA D. melanogaster dm3 dmel_r5.57 chr2L:12706448-12706471 + 8 TGA-C TGA Preliminary EOG7Z6MW6 AGAP009838 No Comparison Unbiased FBtr0080397 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:12706448-12706471&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0080397 FBtr0080493 FBgn0032474 DnaJ-H-RB D. melanogaster dm3 dmel_r5.57 chr2L:13163397-13163549 - 51 TAG-T TAG Preliminary EOG7CZWP4 AGAP005981 AGAP005981-RA Non-RT No Comparison Unbiased FBtr0080493 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:13163397-13163549&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0080493 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:24449655-24449747&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005981-RA FBtr0081002 FBgn0000183 BicD-RA D. melanogaster dm3 dmel_r5.57 chr2L:17461666-17461725 - 20 TAA-C TAA Preliminary EOG7BGV2T AGAP010206 AGAP010206-RA RT Yes Ancient Unbiased No FBtr0081002 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:17461666-17461725&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081002 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:50702199-50702258&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010206-RA FBtr0081040 FBgn0041184 Socs36E-RA D. melanogaster dm3 dmel_r5.57 chr2L:18139533-18139844 - 104 TAG-C TAG Preliminary EOG74Z3PS AGAP011042 No Comparison Unbiased FBtr0081040 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:18139533-18139844&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081040 FBtr0081042 FBgn0001301 kel-RA D. melanogaster dm3 dmel_r5.57 chr2L:18130774-18131520+chr2L:18131582-18132609+chr2L:18132963-18133525+chr2L:18133588-18133613 - 788 TGA-A TGA Preliminary EOG7SNKVG AGAP008362 No Comparison Unbiased FBtr0081042 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:18130774-18131520+chr2L:18131582-18132609+chr2L:18132963-18133525+chr2L:18133588-18133613&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081042 FBtr0081073 FBgn0032694 MESR3-RA D. melanogaster dm3 dmel_r5.57 chr2L:18661052-18661105 + 18 TGA-G TGA Preliminary RNA Structure EOG7SFVDQ AGAP007736 AGAP007736-RA Non-RT No Comparison Unbiased FBtr0081073 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:18661052-18661105&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081073 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:141969-141977&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007736-RA FBtr0081169 FBgn0002023 Lim3-RB D. melanogaster dm3 dmel_r5.57 chr2L:19080096-19080200 - 35 TGA-T TGA Preliminary EOG700KRP AGAP009088 AGAP009088-RA Ambiguous No Unbiased FBtr0081169 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:19080096-19080200&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081169 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:25498124-25498183&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009088-RA FBtr0081195 FBgn0015380 drl-RA D. melanogaster dm3 dmel_r5.57 chr2L:19207738-19207842 + 35 TAA-C TAA Preliminary EOG7SFVD2 AGAP008009 AGAP008009-RA RT Yes Ancient Unbiased No FBtr0081195 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:19207738-19207842&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081195 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:4024559-4024759&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008009-RA FBtr0081282 FBgn0032796 CG10188-RB D. melanogaster dm3 dmel_r5.57 chr2L:19503099-19503128 - 10 TGA-C TGA Preliminary EOG7BGV2Q AGAP007712 AGAP007712-RA RT Yes Ancient Unbiased No FBtr0081282 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:19503099-19503128&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081282 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:49190952-49190978&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007712-RA FBtr0081658 FBgn0003339 Scr-RB D. melanogaster dm3 dmel_r5.57 chr3R:2651074-2651103 - 10 TAG-G TAG EOG7CGJH7 AGAP004659 AGAP004659-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:2651074-2651103&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081658 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:59732268-59732438&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004659-RA FBtr0081730 FBgn0037445 CG9727-RA D. melanogaster dm3 dmel_r5.57 chr3R:2277424-2277570 - 49 TAG-A TAG Preliminary EOG7Q2ZNQ AGAP013226 AGAP013226-RA Non-RT No Comparison Unbiased FBtr0081730 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:2277424-2277570&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081730 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:24315045-24315092&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013226-RA FBtr0081759 FBgn0000504 dsx-RA D. melanogaster dm3 dmel_r5.57 chr3R:3751073-3751082+chr3R:3755893-3755951 - 23 TAG-C TAA,TAG Preliminary RNA Structure EOG7CKDQX No Comparison Unbiased FBtr0081759 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:3751073-3751082+chr3R:3755893-3755951&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081759 FBtr0081808 FBgn0001138 grn-RA D. melanogaster dm3 dmel_r5.57 chr3R:3974621-3974659 - 13 TGA-T TGA Preliminary RNA Structure EOG7GZ0VH AGAP002235 No Comparison Unbiased FBtr0081808 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:3974621-3974686+chr3R:3974992-3975054&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0081808 FBtr0082151 FBgn0037766 Teh1-RA D. melanogaster dm3 dmel_r5.57 chr3R:5654388-5654447 - 20 TGA-C TGA Preliminary EOG7PPGQT AGAP003797 AGAP003797-RA RT Yes Ancient Unbiased No FBtr0082151 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:5654388-5654517+chr3R:5690691-5690710&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0082151 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:43409691-43409710+chr2R:43418784-43418913&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003797-RA FBtr0082177 FBgn0041105 nerfin-2-RA D. melanogaster dm3 dmel_r5.57 chr3R:5899176-5899415 + 80 TGA-C TGA Preliminary EOG7PGR73 AGAP002845 AGAP002845-RA Non-RT No Comparison Unbiased FBtr0082177 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:5899176-5899415&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0082177 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:28276552-28276665&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002845-RA FBtr0082288 FBgn0037848 Tsp86D-RA D. melanogaster dm3 dmel_r5.57 chr3R:6695688-6695762 + 25 TGA-G TGA Preliminary EOG71CS40 AGAP002257 AGAP002257-RA RT Yes Ancient Unbiased No FBtr0082288 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:6695688-6695762&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0082288 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:18229125-18229187&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002257-RA FBtr0082432 FBgn0037944 CG6923-RA D. melanogaster dm3 dmel_r5.57 chr3R:7570634-7570660 - 9 TGA-C TGA Preliminary EOG7SC05R AGAP013357 No Comparison Unbiased FBtr0082432 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:7570634-7570660&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0082432 FBtr0082533 FBgn0265276 l(3)neo38-RA D. melanogaster dm3 dmel_r5.57 chr3R:7594538-7594561 - 8 TGA-G TGA Preliminary EOG7MDG77 AGAP004178 AGAP004178-RA RT Yes Ancient Unbiased No FBtr0082533 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:7594538-7594561&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0082533 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:51246246-51246269&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004178-RA FBtr0082562 FBgn0003651 svp-RC D. melanogaster dm3 dmel_r5.57 chr3R:8126724-8126756 + 11 TGA-C TGA Preliminary EOG7B67CC AGAP002544 AGAP002544-RA RT Yes Ancient Unbiased No FBtr0082562 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:8126724-8126756&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0082562 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:22660169-22660204&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002544-RA FBtr0082914 FBgn0038202 CG12402-RA D. melanogaster dm3 dmel_r5.57 chr3R:9931260-9931280 - 7 TAG-C TAG Preliminary Double 32 EOG7QVXJW No Comparison Unbiased FBtr0082914 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:9931164-9931280&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0082914 FBtr0083082 FBgn0026441 ear-RA D. melanogaster dm3 dmel_r5.57 chr3R:11150007-11150048 + 14 TGA-C TGA Preliminary EOG718WWK AGAP002132 AGAP002132-RA RT Yes Ancient Unbiased No FBtr0083082 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:11150007-11150048&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083082 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:16100373-16100378&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002132-RA FBtr0083210 FBgn0013334 Sap47-RG D. melanogaster dm3 dmel_r5.57 chr3R:11785275-11785322 + 16 TAA-T TAA EOG757QF5 AGAP004273 AGAP004273-RC RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:11785275-11785322&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083210 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:53538235-53538291&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004273-RC FBtr0083261 FBgn0250823 gish-RD D. melanogaster dm3 dmel_r5.57 chr3R:12127597-12127803 + 69 TGA-C TGA Preliminary EOG7RZH6C AGAP003997 AGAP003997-RA RT Yes Ancient Unbiased No FBtr0083261 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:12127036-12127073+chr3R:12127545-12127803&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083261 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:47729074-47729111+chr2R:47730385-47730625&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003997-RA FBtr0083312 FBgn0044826 Pak3-RA D. melanogaster dm3 dmel_r5.57 chr3R:12276881-12276922 - 14 TAG-T TAG Preliminary EOG7KMH93 AGAP001790 AGAP001790-RA Non-RT No Comparison Unbiased FBtr0083312 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:12276881-12276922&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083312 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:10491249-10491596&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001790-RA FBtr0083381 FBgn0000015 Abd-B-RC D. melanogaster dm3 dmel_r5.57 chr3R:12755063-12755110 - 16 TGA-C TGA Preliminary Double 37 EOG7161NQ AGAP004664 AGAP004664-RA RT Yes Ancient Unbiased No FBtr0083381 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:12754952-12755110&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083381 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:60410736-60411038&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004664-RA FBtr0083435 FBgn0262871 lute-RA D. melanogaster dm3 dmel_r5.57 chr3R:13214703-13214876 + 58 TGA-T TGA Preliminary EOG7KX40W AGAP004234 AGAP004234-RA Non-RT No Comparison Unbiased FBtr0083435 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:13214703-13214876&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083435 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:52950133-52950183&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004234-RA FBtr0083447 FBgn0038504 Sur-8-RA D. melanogaster dm3 dmel_r5.57 chr3R:13222899-13223057 - 53 TGA-G TGA Preliminary RNA Structure EOG7M107Q AGAP004485 AGAP004485-RA Non-RT No Comparison Unbiased FBtr0083447 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:13222899-13223057&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083447 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:56833392-56833499&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004485-RA FBtr0083542 FBgn0003499 sr-RA D. melanogaster dm3 dmel_r5.57 chr3R:13958204-13958458 + 85 TAG-A TAG Preliminary EOG7TBPJJ AGAP002773 AGAP002773-RA RT Yes Ancient Unbiased No FBtr0083542 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:13958204-13958458&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083542 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:27016800-27017138&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002773-RA FBtr0083584 FBgn0004618 gl-RA D. melanogaster dm3 dmel_r5.57 chr3R:14194299-14194523 - 75 TGA-C TGA Preliminary EOG7KMH9Q AGAP004331 AGAP004331-RA RT Yes Ancient Unbiased No FBtr0083584 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14194299-14194523&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083584 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:54678639-54678655+chr2R:54678781-54679381&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004331-RA FBtr0083611 FBgn0011481 Ssdp-RA D. melanogaster dm3 dmel_r5.57 chr3R:14020706-14020897 - 64 TAA-C TAA Preliminary EOG7XDNZV AGAP010909 AGAP010909-RA Non-RT No Comparison Unbiased FBtr0083611 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14020706-14020897&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083611 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:12886196-12886198&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010909-RA FBtr0083640 FBgn0004652 fru-RH D. melanogaster dm3 dmel_r5.57 chr3R:14247799-14248359 - 187 TGA-T TGA Preliminary EOG7VF865 AGAP000080 AGAP000080-RB RT Yes Ancient Unbiased No FBtr0083640 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14247799-14248359&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083640 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:1298873-1300108&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000080-RB FBtr0083644 FBgn0004652 fru-RF D. melanogaster dm3 dmel_r5.57 chr3R:14242283-14242498 - 72 TAA-G TAA EOG7VF865 AGAP000080 AGAP000080-RA RT No Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14242283-14242498&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083644 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:1308428-1308484&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000080-RA FBtr0083677 FBgn0038653 CG18208-RA D. melanogaster dm3 dmel_r5.57 chr3R:14631750-14631872 - 41 TGA-T TGA Preliminary RNA Structure EOG74JMR4 AGAP000606 AGAP000606-RA RT Yes Ancient Unbiased No FBtr0083677 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14631750-14631872&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083677 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:11101429-11101548&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000606-RA FBtr0083752 FBgn0261285 Ppcs-RA D. melanogaster dm3 dmel_r5.57 chr3R:14967138-14967317 - 60 TGA-C TGA Preliminary EOG703G0M AGAP004311 No Comparison Unbiased FBtr0083752 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14967138-14967365+chr3R:14967603-14967644&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083752 FBtr0083762 FBgn0051221 CG31221-RA D. melanogaster dm3 dmel_r5.57 chr3R:15282990-15283094 + 35 TGA-G TGA Preliminary EOG75TXW2 AGAP010260 AGAP010260-RA RT Yes Ancient Unbiased No FBtr0083762 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:15282990-15283094&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083762 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:51755482-51755583&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010260-RA FBtr0083859 FBgn0038740 CG4562-RA D. melanogaster dm3 dmel_r5.57 chr3R:15693054-15693191 - 46 TGA-C TGA Preliminary EOG706B6T AGAP006427 No Comparison Unbiased FBtr0083859 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:15693054-15693191&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083859 FBtr0083912 FBgn0023097 bon-RA D. melanogaster dm3 dmel_r5.57 chr3R:16436559-16436780 + 74 TAG-A TAG Preliminary EOG7TV1QT AGAP001328 AGAP001328-RA RT No Unbiased No FBtr0083912 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:16436559-16436780&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083912 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:3049091-3049711&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001328-RA FBtr0083933 FBgn0024944 Oamb-RB D. melanogaster dm3 dmel_r5.57 chr3R:16518534-16518668 - 45 TGA-C TGA Preliminary EOG7X9SQ6 AGAP000045 AGAP000045-RB RT Yes Ancient Unbiased No FBtr0083933 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:16518534-16518668&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083933 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:727796-728263&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000045-RB FBtr0083934 FBgn0024944 Oamb-RC D. melanogaster dm3 dmel_r5.57 chr3R:16515697-16515903 - 69 TGA-C TGA Preliminary Double 37 EOG7X9SQ6 AGAP000045 AGAP000045-RA RT Yes Ancient Unbiased No FBtr0083932 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:16515586-16515903&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0083934 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:735719-736213&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000045-RA FBtr0084032 FBgn0023423 slmb-RA D. melanogaster dm3 dmel_r5.57 chr3R:16946181-16946441 - 87 TAA-C TAA Preliminary EOG7FJTGV AGAP001944 No Comparison Unbiased FBtr0084032 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:16946181-16946461+chr3R:16946556-16946625&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084032 FBtr0084051 FBgn0038872 Nelf-A-RA D. melanogaster dm3 dmel_r5.57 chr3R:17054509-17054547 + 13 TAG-T TAG Preliminary RNA Structure EOG799D6S AGAP002290 AGAP002290-RA Ambiguous No Unbiased FBtr0084051 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:17054509-17054547&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084051 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:18638883-18638894&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002290-RA FBtr0084161 FBgn0013759 CASK-RB D. melanogaster dm3 dmel_r5.57 chr3R:17612312-17612404 - 31 TGA-C TGA Preliminary EOG7BKQ9M AGAP001683 AGAP001683-RA RT Yes Ancient Unbiased No FBtr0084161 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:17612312-17612404&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084161 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:8247379-8247459&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001683-RA FBtr0084169 FBgn0264490 Eip93F-RA D. melanogaster dm3 dmel_r5.57 chr3R:17832227-17832295 + 23 TAG-G TAG Preliminary EOG77HQWS No Comparison Unbiased FBtr0084169 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:17832227-17832295&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084169 FBtr0084197 FBgn0051163 SKIP-RB D. melanogaster dm3 dmel_r5.57 chr3R:18119624-18120007 + 128 TAA-C TAA Preliminary EOG7FRJZK AGAP004106 AGAP004106-RA RT No Unbiased No FBtr0084197 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:18119624-18120007&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084197 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:49935653-49935787&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004106-RA FBtr0084239 FBgn0038948 PSR-RA D. melanogaster dm3 dmel_r5.57 chr3R:18186692-18186790 - 33 TGA-T TGA Preliminary EOG71KHKN AGAP000158 AGAP000158-RA Non-RT No Comparison Unbiased FBtr0084239 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:18186692-18186790&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084239 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:2777012-2777197&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000158-RA FBtr0084509 FBgn0039137 CG13604-RA D. melanogaster dm3 dmel_r5.57 chr3R:19815158-19815193 - 12 TAG-T TAG Preliminary RNA Structure EOG7JQP4F AGAP002463 AGAP002463-RB Non-RT No Comparison Unbiased FBtr0084509 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:19815158-19815193&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084509 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:21821370-21821375&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002463-RB FBtr0084522 FBgn0039126 CG13601-RA D. melanogaster dm3 dmel_r5.57 chr3R:19752285-19752350 - 22 TGA-C TGA Preliminary EOG71S82Z AGAP001401 No Comparison Unbiased FBtr0084522 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:19752285-19752350&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084522 FBtr0084565 FBgn0039169 Spps-RA D. melanogaster dm3 dmel_r5.57 chr3R:20049420-20049470 - 17 TAG-C TAA,TAG Preliminary EOG77DVP7 AGAP004438 No Comparison Unbiased FBtr0084565 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:20049420-20049470&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084565 FBtr0084619 FBgn0000036 nAChRalpha1-RA D. melanogaster dm3 dmel_r5.57 chr3R:20227371-20227460 - 30 TAG-C TAA,TAG Preliminary RNA Structure EOG7V1S6T AGAP002974 AGAP002974-RA RT No Unbiased No FBtr0084619 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:20227371-20227460&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084619 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:30478829-30478909&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002974-RA FBtr0084668 FBgn0039214 puf-RD D. melanogaster dm3 dmel_r5.57 chr3R:20462126-20462179 - 18 TAG-T TAG Preliminary EOG7KT7RJ AGAP003643 AGAP003643-RA Non-RT No Comparison Unbiased FBtr0084666 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:20462126-20462179&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084668 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:40922823-40922870&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003643-RA FBtr0084683 FBgn0003429 slo-RB D. melanogaster dm3 dmel_r5.57 chr3R:20533133-20533180 + 16 TGA-T TGA Preliminary EOG7GR8BQ AGAP003709 AGAP003709-RA RT Yes Ancient Unbiased No FBtr0084683 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:20533133-20533180&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084683 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:42280985-42281149&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003709-RA FBtr0084803 FBgn0039286 dan-RA D. melanogaster dm3 dmel_r5.57 chr3R:21017698-21018006 + 103 TAG-G TAG Preliminary EOG7K71BN AGAP013200 AGAP013200-RA Non-RT No Comparison Unbiased FBtr0084803 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:21017698-21018006&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084803 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:25394871-25394912&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013200-RA FBtr0084814 FBgn0039303 CG11857-RA D. melanogaster dm3 dmel_r5.57 chr3R:21085759-21085944 + 62 TGA-C TGA EOG783ZCC AGAP011996 AGAP011996-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:21085759-21085944&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084814 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:36028709-36028723+chr3L:36028812-36029093&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011996-RA FBtr0084908 FBgn0039380 CG5890-RA D. melanogaster dm3 dmel_r5.57 chr3R:21695389-21695391 + 1 TGA-T TGA Double 22 Double-Stop EOG79PW69 AGAP002000 AGAP002000-RA RT Yes Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:21695389-21695457&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084908 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:13365843-13365917&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002000-RA FBtr0084912 FBgn0027865 Tsp96F-RA D. melanogaster dm3 dmel_r5.57 chr3R:21700764-21700811 - 16 TGA-G TGA Preliminary EOG76MWSN AGAP000823 AGAP000823-RA Ambiguous No Unbiased FBtr0084912 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:21700764-21700811&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0084912 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:15332443-15332532&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000823-RA FBtr0085012 FBgn0039427 CG5447-RA D. melanogaster dm3 dmel_r5.57 chr3R:22279432-22279470 + 13 TGA-C TGA Preliminary EOG7RK18M AGAP004120 AGAP004120-RA RT Yes Ancient Unbiased No FBtr0085012 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:22279432-22279470&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085012 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:50320359-50320397&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004120-RA FBtr0085059 FBgn0262473 Tl-RB D. melanogaster dm3 dmel_r5.57 chr3R:22666870-22666929 + 20 TAG-G TAG Preliminary EOG7GJHVZ AGAP001004 AGAP001004-RA Ambiguous No Unbiased FBtr0085059 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:22666870-22666929&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085059 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:19057316-19057426&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001004-RA FBtr0085088 FBgn0004510 Ets97D-RA D. melanogaster dm3 dmel_r5.57 chr3R:22736774-22736833 - 20 TGA-C TGA Preliminary EOG7G25Q1 AGAP004337 AGAP004337-RA Non-RT No Comparison Unbiased FBtr0085088 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:22736774-22736833&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085088 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:54822639-54822719&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004337-RA FBtr0085220 FBgn0045862 btz-RA D. melanogaster dm3 dmel_r5.57 chr3R:23528656-23528790 + 45 TGA-G TGA Preliminary EOG7VTR59 AGAP011399 No Comparison Unbiased FBtr0085220 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:23528656-23528790&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085220 FBtr0085365 FBgn0039633 CG11873-RA D. melanogaster dm3 dmel_r5.57 chr3R:24932425-24932505 + 27 TGA-C TGA Preliminary EOG7VQVVW No Comparison Unbiased FBtr0085365 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:24932425-24932505&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085365 FBtr0085415 FBgn0005596 yem-RA D. melanogaster dm3 dmel_r5.57 chr3R:24944307-24944603 - 99 TGA-C TGA Preliminary EOG7KQCJ8 AGAP002048 No Comparison Unbiased FBtr0085415 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:24944307-24944603&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085415 FBtr0085467 FBgn0266137 Dop1R2-RA D. melanogaster dm3 dmel_r5.57 chr3R:25457689-25458498 - 270 TGA-C TGA Preliminary EOG796J01 AGAP000667 No Comparison Unbiased FBtr0085467 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:25457689-25458582+chr3R:25465951-25465956&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085467 FBtr0085474 FBgn0039690 CG1969-RB D. melanogaster dm3 dmel_r5.57 chr3R:25567116-25567154 + 13 TGA-C TGA Preliminary EOG71GNC5 AGAP010769 AGAP010769-RA RT Yes Ancient Unbiased No FBtr0085474 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:25567116-25567154&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085474 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:10104006-10104050&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010769-RA FBtr0085507 FBgn0004622 TkR99D-RA D. melanogaster dm3 dmel_r5.57 chr3R:25777090-25777224 - 45 TGA-C TGA Preliminary EOG7NWHT2 AGAP001592 No Comparison Unbiased FBtr0085507 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:25777090-25777224&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085507 FBtr0085619 FBgn0010113 hdc-RA D. melanogaster dm3 dmel_r5.57 chr3R:26186263-26187552 + 430 TAA-C TAA Preliminary RNA Structure EOG754V5R AGAP003059 AGAP003059-RA RT No Unbiased No FBtr0085619 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:26186263-26187552&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085619 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:31793043-31794464&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003059-RA FBtr0085692 FBgn0028646 aralar1-RC D. melanogaster dm3 dmel_r5.57 chr3R:26271891-26271926 - 12 TGA-T TGA Preliminary EOG7V4NFM AGAP000958 AGAP000958-RA Non-RT No Comparison Unbiased FBtr0085692 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:26271891-26271926&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085692 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:18370522-18370524&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000958-RA FBtr0085701 FBgn0004606 zfh1-RB D. melanogaster dm3 dmel_r5.57 chr3R:26611926-26612381 + 152 TAG-G TAG Preliminary EOG7P64GX AGAP000779 AGAP000779-RA RT No Unbiased No FBtr0085701 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:26611926-26612381&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085701 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:13969188-13969856&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000779-RA FBtr0085760 FBgn0086362 spn-F-RA D. melanogaster dm3 dmel_r5.57 chr3R:27082128-27082163 + 12 TGA-C TGA Preliminary EOG7V1S7G AGAP000758 AGAP000758-RA RT Yes Ancient Unbiased No FBtr0085760 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:27082128-27082163&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085760 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:13768303-13768359&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000758-RA FBtr0085778 FBgn0000313 chp-RA D. melanogaster dm3 dmel_r5.57 chr3R:27030281-27030358 - 26 TGA-C TGA Preliminary EOG771CQ2 AGAP000019 No Comparison Unbiased FBtr0085778 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:27030281-27030358&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085778 FBtr0085793 FBgn0028968 gammaCOP-RA D. melanogaster dm3 dmel_r5.57 chr3R:27401109-27401165 + 19 TAA-G TAA Preliminary RNA Structure EOG7FC30N AGAP009291 AGAP009291-RA Non-RT No Comparison Unbiased FBtr0085793 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:27401109-27401165&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085793 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:30875647-30875787&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009291-RA FBtr0085821 FBgn0039862 kek6-RA D. melanogaster dm3 dmel_r5.57 chr3R:27487332-27487352 + 7 TAG-T TAG Preliminary EOG76XHG6 AGAP000446 AGAP000446-RA RT Yes Ancient Unbiased No FBtr0085821 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:27487332-27487352&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085821 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:7843486-7843671&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000446-RA FBtr0085857 FBgn0039876 CG2126-RA D. melanogaster dm3 dmel_r5.57 chr3R:27601001-27601072 - 24 TGA-T TGA Preliminary EOG7SVBC7 AGAP001461 AGAP001461-RA Non-RT No Comparison Unbiased FBtr0085857 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:27601001-27601072&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0085857 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:5292859-5292900&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001461-RA FBtr0086111 FBgn0000054 Adf1-RA D. melanogaster dm3 dmel_r5.57 chr2R:2554883-2554945 + 21 TAA-C TAA Preliminary EOG78T219 No Comparison Unbiased FBtr0086111 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:2554883-2554945&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086111 FBtr0086450 FBgn0260934 par-1-RA D. melanogaster dm3 dmel_r5.57 chr2R:15370913-15371608 + 232 TGA-C TGA Preliminary EOG7B0GW5 AGAP012064 No Comparison Unbiased FBtr0086450 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:15370761-15370791+chr2R:15370854-15371608&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086450 FBtr0086483 FBgn0015949 hrg-RA D. melanogaster dm3 dmel_r5.57 chr2R:15552167-15552171+chr2R:15553030-15553528 - 168 TGA-C TGA Preliminary EOG74JMR7 AGAP013207 AGAP013207-RA Ambiguous No Unbiased FBtr0086483 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:15552167-15552171+chr2R:15553030-15553528&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086483 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:36914532-36914693&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013207-RA FBtr0086512 FBgn0003254 rib-RA D. melanogaster dm3 dmel_r5.57 chr2R:15167620-15167676 + 19 TGA-T TGA Preliminary EOG7WB3B3 AGAP011902 AGAP011902-RA Non-RT No Comparison Unbiased FBtr0086512 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:15167620-15167676&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086512 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:34809069-34809125&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011902-RA FBtr0086577 FBgn0004168 5-HT1A-RB D. melanogaster dm3 dmel_r5.57 chr2R:15006966-15006988+chr2R:15008029-15008041 + 12 TAG-A TAG EOG7GV4KW AGAP007136 AGAP007136-RA Non-RT No Comparison Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:15006966-15006988+chr2R:15008029-15008041&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086577 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:43461969-43461977&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007136-RA FBtr0086599 FBgn0263116 5-HT1B-RA D. melanogaster dm3 dmel_r5.57 chr2R:14911054-14911089 - 12 TGA-T TGA Preliminary EOG7GV4KW AGAP007136 AGAP007136-RA Non-RT No Comparison Unbiased FBtr0086599 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:14911054-14911089&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086599 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:43461969-43461977&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007136-RA FBtr0086628 FBgn0034400 CG15099-RA D. melanogaster dm3 dmel_r5.57 chr2R:14724600-14724851 - 84 TGA-A TGA Preliminary EOG71GN9V AGAP007605 AGAP007605-RA Ambiguous No Unbiased FBtr0086628 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:14724600-14724851&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086628 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:48172656-48172658&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007605-RA FBtr0086630 FBgn0034396 CG15097-RA D. melanogaster dm3 dmel_r5.57 chr2R:14710114-14710464 - 117 TGA-C TGA Preliminary Double 9 EOG7SRG3N AGAP009641 AGAP009641-RA Ambiguous No Unbiased FBtr0086630 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:14710087-14710464&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086630 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:37481186-37481308&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009641-RA FBtr0086732 FBgn0034300 CG5098-RA D. melanogaster dm3 dmel_r5.57 chr2R:13987714-13987758 + 15 TGA-G TGA Preliminary EOG7GR8BR AGAP005259 AGAP005259-RA Non-RT No Comparison Unbiased FBtr0086732 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:13987714-13987758&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086732 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:13342937-13342957&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005259-RA FBtr0086780 FBgn0034304 CG5742-RA D. melanogaster dm3 dmel_r5.57 chr2R:14037055-14037180 - 42 TGA-C TGA Preliminary EOG7F2G99 AGAP009954 AGAP009954-RA Non-RT No Comparison Unbiased FBtr0086780 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:14037055-14037180&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086780 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:46301701-46301774+chr3R:46302199-46302427&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009954-RA FBtr0086916 FBgn0034215 Mtap-RA D. melanogaster dm3 dmel_r5.57 chr2R:13316547-13316759 + 71 TGA-C TGA Preliminary EOG78134D AGAP005129 No Comparison Unbiased FBtr0086916 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:13316398-13316448+chr2R:13316508-13316759&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0086916 FBtr0087079 FBgn0267002 unc-104-RD D. melanogaster dm3 dmel_r5.57 chr2R:12640910-12640945 - 12 TGA-G TGA Preliminary EOG77MM4N AGAP010519 No Comparison Unbiased FBtr0087079 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:12640910-12640945&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087079 FBtr0087125 FBgn0034136 DAT-RA D. melanogaster dm3 dmel_r5.57 chr2R:12446854-12446892 - 13 TGA-G TGA Preliminary EOG7G51XB AGAP007367 AGAP007367-RA RT Yes Ancient Unbiased No FBtr0087125 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:12446854-12446892&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087125 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:46108937-46108984&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007367-RA FBtr0087141 FBgn0034110 Atg9-RA D. melanogaster dm3 dmel_r5.57 chr2R:12184564-12184584 + 7 TAG-C TAG Preliminary EOG7FC30R AGAP001762 AGAP001762-RA RT Yes Ancient Unbiased No FBtr0087141 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:12184564-12184584&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087141 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:9493076-9493096&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001762-RA FBtr0087357 FBgn0019968 Khc-73-RA D. melanogaster dm3 dmel_r5.57 chr2R:11406083-11406256 - 58 TGA-T TGA Preliminary EOG72RZF0 AGAP007592 No Comparison Unbiased FBtr0087356 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:11406083-11406336+chr2R:11406399-11406408&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087357 FBtr0087402 FBgn0033998 row-RA D. melanogaster dm3 dmel_r5.57 chr2R:11094395-11094454 - 20 TGA-T TGA Preliminary EOG7C8T06 AGAP001141 AGAP001141-RB Non-RT No Comparison Unbiased FBtr0087402 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:11094395-11094454&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087402 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:587706-587714&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001141-RB FBtr0087462 FBgn0033971 CG10209-RA D. melanogaster dm3 dmel_r5.57 chr2R:10733836-10733922 - 29 TGA-G TGA Preliminary EOG7FC317 No Comparison Unbiased FBtr0087462 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:10733836-10733922&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087462 FBtr0087468 FBgn0020767 Spred-RA D. melanogaster dm3 dmel_r5.57 chr2R:10649265-10649543 - 93 TGA-C TGA Preliminary EOG7XQ8P4 AGAP012085 AGAP012085-RA RT No Unbiased No FBtr0087468 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:10649265-10649543&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087468 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:37482772-37482900&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012085-RA FBtr0087603 FBgn0020620 RN-tre-RC D. melanogaster dm3 dmel_r5.57 chr2R:9873102-9873284 - 61 TGA-C TGA Preliminary EOG7X6XG9 AGAP003818 No Comparison Unbiased FBtr0087603 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:9873102-9873351+chr2R:9873495-9873517&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087603 FBtr0087678 FBgn0027581 CG6191-RA D. melanogaster dm3 dmel_r5.57 chr2R:9468409-9468495 - 29 TAG-G TAG Preliminary RNA Structure EOG796J08 AGAP010843 AGAP010843-RA Non-RT No Comparison Unbiased FBtr0087678 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:9468409-9468495&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087678 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:11874924-11875034&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010843-RA FBtr0087755 FBgn0052843 Dh31-R-RA D. melanogaster dm3 dmel_r5.57 chr2R:9156071-9156553 - 161 TGA-C TGA Preliminary EOG7P388H AGAP009770 No Comparison Unbiased FBtr0087755 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:9156071-9156598+chr2R:9156897-9156941&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087755 FBtr0087793 FBgn0265623 Su(z)2-RA D. melanogaster dm3 dmel_r5.57 chr2R:8891882-8891888+chr2R:8893270-8893346 + 28 TAG-T TAG Preliminary EOG7FC30M No Comparison Unbiased FBtr0087793 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:8891882-8891888+chr2R:8893270-8893346&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087793 FBtr0087978 FBgn0024732 Drep-1-RA D. melanogaster dm3 dmel_r5.57 chr2R:7936671-7936697 + 9 TGA-C TGA Preliminary EOG7Z6MWK No Comparison Unbiased FBtr0087978 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:7936671-7936697&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0087978 FBtr0088088 FBgn0033639 CG9003-RA D. melanogaster dm3 dmel_r5.57 chr2R:7530640-7530693 - 18 TGA-G TGA Preliminary Double 42 EOG7QS2B7 AGAP007807 AGAP007807-RA RT Yes Ancient Unbiased No FBtr0088088 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:7530514-7530693&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088088 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:1276294-1276347&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007807-RA FBtr0088098 FBgn0003396 shn-RA D. melanogaster dm3 dmel_r5.57 chr2R:7103720-7103749 + 10 TGA-C TGA Preliminary EOG7Q03DC AGAP007640 AGAP007640-RA Non-RT No Comparison Unbiased FBtr0088098 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:7103720-7103749&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088098 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:48589293-48589322&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007640-RA FBtr0088139 FBgn0000581 E(Pc)-RA D. melanogaster dm3 dmel_r5.57 chr2R:7349319-7349348 + 10 TGA-G TGA Preliminary Double 64 EOG7JXDMK AGAP008026 AGAP008026-RA Ambiguous No Unbiased FBtr0088139 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:7349319-7349540&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088139 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:4499148-4499174&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008026-RA FBtr0088214 FBgn0024836 stan-RA D. melanogaster dm3 dmel_r5.57 chr2R:6607339-6607545 + 69 TGA-C TGA Preliminary EOG72RZDZ AGAP004850 No Comparison Unbiased FBtr0088214 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:6604851-6604906+chr2R:6607305-6607545&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088214 FBtr0088262 FBgn0262114 RanBPM-RC D. melanogaster dm3 dmel_r5.57 chr2R:6322728-6323228 + 167 TGA-C TGA Preliminary EOG7SC04Z AGAP005063 AGAP005063-RA RT Yes Ancient Unbiased No FBtr0088262 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:6322728-6323228&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088262 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:9167112-9167153&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005063-RA FBtr0088275 FBgn0263102 psq-RB D. melanogaster dm3 dmel_r5.57 chr2R:6502347-6502586 + 80 TGA-G TGA Preliminary EOG7M6QQN No Comparison Unbiased FBtr0088275 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:6502347-6502586&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088275 FBtr0088368 FBgn0000448 Hr46-RA D. melanogaster dm3 dmel_r5.57 chr2R:6095387-6095512 - 42 TAA-C TAA Preliminary EOG7XT4WW AGAP009002 AGAP009002-RD Ambiguous No Unbiased FBtr0088368 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:6095387-6095512&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088368 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:23136731-23137117&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009002-RD FBtr0088410 FBgn0001291 Jra-RB D. melanogaster dm3 dmel_r5.57 chr2R:5985642-5985890 + 83 TAA-C TAA,TAG Preliminary EOG7TFJSV AGAP006386 AGAP006386-RB Non-RT No Comparison Unbiased FBtr0088410 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:5985642-5985890&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088410 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:31038778-31038927&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006386-RB FBtr0088566 FBgn0015838 Vang-RA D. melanogaster dm3 dmel_r5.57 chr2R:4992894-4992974 + 27 TGA-C TGA Preliminary EOG7K4538 AGAP012288 AGAP012288-RA RT Yes Ancient Unbiased No FBtr0088566 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:4992894-4992974&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088566 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:39796269-39796412&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012288-RA FBtr0088686 FBgn0033337 CG8272-RA D. melanogaster dm3 dmel_r5.57 chr2R:4776479-4776541 - 21 TGA-T TGA Preliminary EOG71GNBB No Comparison Unbiased FBtr0088686 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:4776479-4776541&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088686 FBtr0088756 FBgn0050361 mtt-RC D. melanogaster dm3 dmel_r5.57 chr2R:4362749-4362919 - 57 TAG-C TAA,TAG Preliminary EOG7WMQ1F AGAP005034 No Comparison Unbiased FBtr0088756 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:4362749-4362919&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088756 FBtr0088776 FBgn0020279 lig-RC D. melanogaster dm3 dmel_r5.57 chr2R:3965335-3965802 + 156 TAG-C TAG Preliminary EOG7RG50M AGAP004817 AGAP004817-RA Non-RT No Comparison Unbiased FBtr0088776 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:3965335-3965802&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088776 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:3844370-3844468&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004817-RA FBtr0088865 FBgn0025360 Optix-RA D. melanogaster dm3 dmel_r5.57 chr2R:3929506-3929520 + 5 TGA-T TGA Preliminary EOG722VS3 AGAP003871 AGAP003871-RC Non-RT No Comparison Unbiased FBtr0088865 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:3929506-3929520&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0088865 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:44790059-44790061&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003871-RC FBtr0089288 FBgn0016930 Dyrk2-RA D. melanogaster dm3 dmel_r5.57 chr2L:14186066-14186137 - 24 TGA-C TGA Preliminary EOG7ZDCBP AGAP007847 AGAP007847-RA RT Yes Ancient Unbiased No FBtr0089288 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:14186066-14186137&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0089288 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:1975559-1975612&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007847-RA FBtr0089387 FBgn0036789 AstC-R2-RB D. melanogaster dm3 dmel_r5.57 chr3L:18479775-18479828 - 18 TAA-G TAA Preliminary Double 26 EOG7R2P2D AGAP010486 AGAP010486-RA Non-RT No Comparison Unbiased FBtr0089387 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:18479697-18479828&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0089387 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:4862783-4862812&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010486-RA FBtr0089389 FBgn0020912 Ptx1-RA D. melanogaster dm3 dmel_r5.57 chr3R:26755460-26755762 + 101 TGA-G TGA Preliminary EOG7XT4X9 AGAP000190 AGAP000190-RA RT Yes Ancient Unbiased No FBtr0089389 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:26755460-26755762&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0089389 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:3158052-3158675&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000190-RA FBtr0089477 FBgn0004575 Syn-RA D. melanogaster dm3 dmel_r5.57 chr3R:6043447-6044413+chr3R:6045501-6045865 + 444 TAG-G TAG Preliminary EOG7WB3B2 AGAP003318 AGAP003318-RA RT Yes Ancient Unbiased No FBtr0089477 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:6043447-6044413+chr3R:6045501-6045865&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0089477 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:35928047-35928355&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003318-RA FBtr0089521 FBgn0011672 Mvl-RB D. melanogaster dm3 dmel_r5.57 chr3R:16877781-16877909 - 43 TAG-C TAG Preliminary EOG76MWRM AGAP012464 No Comparison Unbiased FBtr0089521 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:16877781-16877964+chr3R:16881067-16881101&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0089521 FBtr0089796 FBgn0052206 CG32206-RB D. melanogaster dm3 dmel_r5.57 chr3L:19336317-19336370 - 18 TGA-C TGA Preliminary RNA Structure EOG7V1S6J AGAP006059 AGAP006059-RA RT Yes Ancient Unbiased No FBtr0089796 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:19336317-19336370&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0089796 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:25801704-25801799&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006059-RA FBtr0089815 FBgn0023531 CG32809-RD D. melanogaster dm3 dmel_r5.57 chrX:1569869-1569913 - 15 TAA-C TAA Preliminary EOG7GV4KQ AGAP005037 AGAP005037-RB Non-RT No Comparison Unbiased FBtr0089815 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:1569869-1569913&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0089815 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:8668363-8668401&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005037-RB FBtr0091683 FBgn0052831 CG33695-RF D. melanogaster dm3 dmel_r5.57 chr2L:11279464-11279502 + 13 TGA-G TGA EOG77TBNX AGAP009888 AGAP009888-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:11279464-11279502&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0091683 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:44753879-44753917&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009888-RA FBtr0100019 FBgn0038063 Octbeta2R-RA D. melanogaster dm3 dmel_r5.57 chr3R:8378366-8378647 - 94 TAA-T TAA Preliminary EOG7VTR4J AGAP002886 AGAP002886-RA RT Yes Ancient Unbiased No FBtr0100019 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:8378366-8378647&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0100019 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:28811748-28811801&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002886-RA FBtr0100025 FBgn0250851 CG33981-RA D. melanogaster dm3 dmel_r5.57 chr2R:13668605-13668700 - 32 TAA-C TAA Preliminary EOG7KHN3H No Comparison Unbiased FBtr0100025 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:13668605-13668784+chr2R:13668846-13668851&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0100025 FBtr0100113 FBgn0015269 Nf1-RD D. melanogaster dm3 dmel_r5.57 chr3R:21820297-21820383 + 29 TGA-A TGA Preliminary EOG77B0DR AGAP003140 No Comparison Unbiased FBtr0100113 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:21819125-21819206+chr3R:21820289-21820383&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0100113 FBtr0110799 FBgn0031897 CG13784-RC D. melanogaster dm3 dmel_r5.57 chr2L:7206348-7208015 - 556 TAG-C TAG Preliminary Double 130 EOG74RC7B AGAP008574 No Comparison Unbiased FBtr0110799 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:7205958-7208099+chr2L:7208189-7208194&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0110799 FBtr0110905 FBgn0083971 CG34135-RB D. melanogaster dm3 dmel_r5.57 chr3R:4575963-4576154 - 64 TAG-C TAG Preliminary EOG7X9SRF AGAP013378 AGAP013378-RA RT Yes Ancient Unbiased No FBtr0110905 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:4575963-4576154&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0110905 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:27062311-27062358&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013378-RA FBtr0110970 FBgn0034389 Mctp-RA D. melanogaster dm3 dmel_r5.57 chr2R:14661249-14661458 + 70 TAG-T TAG Preliminary RNA Structure EOG7RZH63 AGAP007646 AGAP007646-RA RT Yes Ancient Unbiased No FBtr0110970 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:14661102-14661110+chr2R:14661168-14661458&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0110970 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:48665958-48666131+chr2L:48666205-48666213&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007646-RA FBtr0112561 FBgn0085380 CG34351-RC D. melanogaster dm3 dmel_r5.57 chr2L:4720454-4720474 + 7 TGA-G TGA Preliminary EOG76XHH7 AGAP009306 AGAP009306-RB Non-RT No Comparison Unbiased FBtr0112561 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:4720454-4720474&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0112561 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:31045917-31046006&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009306-RB FBtr0112579 FBgn0085390 Dgk-RG D. melanogaster dm3 dmel_r5.57 chr2R:3724211-3724327 - 39 TGA-T TGA Preliminary EOG7VJ4DC AGAP006762 AGAP006762-RA RT No Unbiased No FBtr0112578 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:3724211-3724327&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0112579 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:38011942-38011986&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006762-RA FBtr0112596 FBgn0085400 CG34371-RA D. melanogaster dm3 dmel_r5.57 chr2R:19051948-19052049 - 34 TGA-G TGA Preliminary EOG75BKNF AGAP001925 AGAP001925-RA Non-RT No Comparison Unbiased FBtr0112596 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:19051948-19052049&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0112596 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:12332347-12332349&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001925-RA FBtr0112617 FBgn0085409 CG34380-RC D. melanogaster dm3 dmel_r5.57 chr2L:6208384-6208884 + 167 TAG-T TAG Preliminary EOG7H4R9M AGAP008742 No Comparison Unbiased FBtr0112617 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:6208384-6208912+chr2L:6209056-6209117&strand=+&endTrPos=501&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0112617 FBtr0112712 FBgn0085447 sif-RF D. melanogaster dm3 dmel_r5.57 chr3L:5735149-5735322 + 58 TAG-C TAG Preliminary RNA Structure EOG7R8DHC AGAP006590 AGAP006590-RA RT Yes Ancient Unbiased No FBtr0112712 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:5735149-5735322&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0112712 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:34294403-34294519&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006590-RA FBtr0112753 FBgn0085478 CG34449-RA D. melanogaster dm3 dmel_r5.57 chrX:9220938-9221291 - 118 TAA-C TAA Preliminary EOG7DVQTN AGAP000567 AGAP000567-RB Non-RT No Comparison Unbiased FBtr0112753 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:9220938-9221291&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0112753 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:10070990-10071004&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000567-RB FBtr0112889 FBgn0016754 sba-RD D. melanogaster dm3 dmel_r5.57 chr3R:19720661-19720729 - 23 TGA-C TGA Preliminary RNA Structure EOG7K71B2 AGAP000707 AGAP000707-RA Non-RT No Comparison Unbiased FBtr0112889 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:19720661-19720729&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0112889 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:12671547-12671687&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000707-RA FBtr0113041 FBgn0032600 CG17912-RB D. melanogaster dm3 dmel_r5.57 chr2L:16749428-16749607 + 60 TGA-T TGA Preliminary EOG7KHN2W AGAP010143 No Comparison Unbiased FBtr0113041 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:16749428-16749607&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0113041 FBtr0113254 FBgn0038814 CG15923-RB D. melanogaster dm3 dmel_r5.57 chr3R:16438280-16438330 - 17 TAG-C TAG Preliminary EOG7CZWNZ AGAP002548 AGAP002548-RA Non-RT No Comparison Unbiased FBtr0113254 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:16438280-16438411+chr3R:16438468-16438476&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0113254 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:22666680-22666694&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002548-RA FBtr0113392 FBgn0051140 CG31140-RD D. melanogaster dm3 dmel_r5.57 chr3R:19806499-19806546 + 16 TAG-A TAG Preliminary EOG7ZM3T1 AGAP004209 AGAP004209-RA Ambiguous No Unbiased FBtr0113392 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:19806499-19806546&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0113392 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:51900150-51900176&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004209-RA FBtr0114466 FBgn0029837 Tsp5D-RB D. melanogaster dm3 dmel_r5.57 chrX:5963983-5963994 - 4 TGA-A TGA Preliminary EOG78Q5SS AGAP007373 AGAP007373-RA RT Yes Ancient Unbiased No FBtr0114466 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:5963983-5963994&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0114466 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:46136701-46136712&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007373-RA FBtr0273324 FBgn0039187 CG6454-RD D. melanogaster dm3 dmel_r5.57 chr3R:20181501-20181524 + 8 TGA-T TGA Preliminary EOG70SJNG AGAP001475 AGAP001475-RA Non-RT No Comparison Unbiased FBtr0273324 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:20181349-20181375+chr3R:20181438-20181524&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0273324 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:5377641-5377664+chr2R:5377943-5378098&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001475-RA FBtr0273378 FBgn0263355 CG31688-RB D. melanogaster dm3 dmel_r5.57 chr2L:20441858-20441890 + 11 TAG-G TAG Preliminary RNA Structure EOG783ZCH AGAP010138 AGAP010138-RA RT Yes Ancient Unbiased No FBtr0273378 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:20441858-20441890&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0273378 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:49345247-49345279&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010138-RA FBtr0273438 FBgn0036259 CG9760-RC D. melanogaster dm3 dmel_r5.57 chr3L:12150939-12151058 - 40 TGA-G TGA Preliminary EOG70WDX9 AGAP007547 AGAP007547-RA Non-RT No Comparison Unbiased FBtr0273438 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:12150939-12151058&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0273438 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:47467353-47467388&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007547-RA FBtr0273450 FBgn0053179 beat-IIIb-RC D. melanogaster dm3 dmel_r5.57 chr2L:16990474-16990503+chr2L:16991981-16992125+chr2L:16992657-16993042 + 187 TGA-C TGA Preliminary EOG767DTF No Comparison Unbiased FBtr0273450 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:16990474-16990503+chr2L:16991981-16992125+chr2L:16992657-16993042&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0273450 FBtr0290009 FBgn0264273 Sema-2b-RB D. melanogaster dm3 dmel_r5.57 chr2R:12316321-12316327+chr2R:12316836-12316945 + 39 TGA-C TGA Preliminary EOG7MDG67 No Comparison Unbiased FBtr0290009 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:12316035-12316037+chr2R:12316234-12316327+chr2R:12316836-12316967+chr2R:12317084-12317151&strand=+&startTrPos=91&endTrPos=207&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0290009 FBtr0290010 FBgn0083962 CG34126-RB D. melanogaster dm3 dmel_r5.57 chr2L:4991612-4991662 + 17 TAG-C TAG Preliminary EOG79M0X8 AGAP008379 No Comparison Unbiased FBtr0290010 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:4991224-4991262+chr2L:4991561-4991662&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0290010 FBtr0290131 FBgn0036235 CG6938-RB D. melanogaster dm3 dmel_r5.57 chr3L:11983445-11983492 + 16 TGA-C TGA Preliminary EOG7TXWZQ AGAP010474 AGAP010474-RA RT Yes Ancient Unbiased No FBtr0290131 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:11983445-11983492&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0290131 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:4170963-4170968&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010474-RA FBtr0290283 FBgn0011582 Dop1R1-RB D. melanogaster dm3 dmel_r5.57 chr3R:10003525-10003641 - 39 TGA-C TGA Preliminary Double 25 EOG7FVF6Q AGAP004613 AGAP004613-RA RT Yes Ancient Unbiased No FBtr0290283 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:10003450-10003641&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0290283 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:58410911-58410919&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004613-RA FBtr0299509 FBgn0259099 DCX-EMAP-RC D. melanogaster dm3 dmel_r5.57 chr3L:14935279-14935404 + 42 TAG-C TAA,TAG Preliminary EOG7747Z5 AGAP000502 AGAP000502-RA RT Yes Ancient Unbiased No FBtr0299509 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:14935279-14935404&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0299509 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:8847274-8847777&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000502-RA FBtr0299549 FBgn0265296 Dscam2-RH D. melanogaster dm3 dmel_r5.57 chr3L:7155411-7155527 - 39 TAG-G TAG Preliminary Double 16 EOG7CGJFX AGAP004902 AGAP004902-RA Non-RT No Comparison Unbiased FBtr0299549 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:7155363-7155527&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0299549 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:5759971-5759973&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004902-RA FBtr0299635 FBgn0259171 Pde9-RB D. melanogaster dm3 dmel_r5.57 chrX:12685497-12685787 - 97 TGA-C TGA Preliminary EOG78T212 AGAP002927 AGAP002927-RA RT Yes Ancient Unbiased No FBtr0299635 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:12685497-12685787&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0299635 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:29692374-29692694&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002927-RA FBtr0299863 FBgn0259242 CG42340-RC D. melanogaster dm3 dmel_r5.57 chrX:6361067-6361774 - 236 TGA-C TGA Preliminary EOG7MM6PR No Comparison Unbiased FBtr0299863 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:6361067-6361774&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0299863 FBtr0300106 FBgn0004102 oc-RC D. melanogaster dm3 dmel_r5.57 chrX:8526337-8526702 - 122 TAG-A TAG Preliminary EOG7M108P No Comparison Unbiased FBtr0300106 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:8526337-8526702&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0300106 FBtr0300119 FBgn0035845 CG13675-RC D. melanogaster dm3 dmel_r5.57 chr3L:8153654-8154265 - 204 TGA-T TGA Preliminary EOG7GFNPB AGAP006435 AGAP006435-RA Non-RT No Comparison Unbiased FBtr0300119 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:8153654-8154265&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0300119 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:31801982-31802002&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP006435-RA FBtr0300259 FBgn0000659 fkh-RB D. melanogaster dm3 dmel_r5.57 chr3R:24408719-24408742 - 8 TGA-C TGA Preliminary Double 174 EOG7TR5HB AGAP001671 AGAP001671-RA RT Yes Ancient Unbiased No FBtr0300259 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:24408197-24408742&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0300259 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:7740963-7740983&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001671-RA FBtr0300330 FBgn0038237 Pde6-RB D. melanogaster dm3 dmel_r5.57 chr3R:10341335-10341352 - 6 TGA-C TGA Preliminary RNA Structure EOG7K9WJX AGAP004119 AGAP004119-RA RT Yes Ancient Unbiased No FBtr0300330 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:10341335-10341352&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0300330 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:50309018-50309095&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004119-RA FBtr0300518 FBgn0267337 rn-RE D. melanogaster dm3 dmel_r5.57 chr3R:3099746-3099763 - 6 TAG-C TAG Preliminary EOG72K6ZB AGAP002082 AGAP002082-RA Ambiguous No Unbiased FBtr0300518 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:3099746-3099763&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0300518 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:14906799-14906801&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002082-RA FBtr0300783 FBgn0036134 fd68A-RG D. melanogaster dm3 dmel_r5.57 chr3L:11108143-11108184 - 14 TGA-T TGA Preliminary EOG7ZM3TJ AGAP000662 No Comparison Unbiased FBtr0076224 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:11108143-11108184&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0300783 FBtr0301016 FBgn0053203 CG33203-RD D. melanogaster dm3 dmel_r5.57 chr3R:24697581-24697721 - 47 TGA-C TGA Preliminary EOG7M6QRC AGAP000844 AGAP000844-RA Ambiguous No Unbiased FBtr0085348 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:24697581-24697721&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301016 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:15570460-15570633&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000844-RA FBtr0301374 FBgn0028371 jbug-RF D. melanogaster dm3 dmel_r5.57 chr2R:18605079-18605183 - 35 TGA-G TGA Preliminary EOG7HTTZT AGAP007006 AGAP007006-RB Non-RT No Comparison Unbiased FBtr0071917 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:18605079-18605183&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301374 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:40730752-40730811&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007006-RB FBtr0301436 FBgn0260793 2mit-RA D. melanogaster dm3 dmel_r5.57 chr3R:8951791-8951832 - 14 TGA-C TGA Preliminary EOG7200HX No Comparison Unbiased FBtr0082714 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:8951791-8951832&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301436 FBtr0301547 FBgn0010575 sbb-RD D. melanogaster dm3 dmel_r5.57 chr2R:14167554-14167607 - 18 TGA-G TGA Preliminary EOG7XDNZ4 AGAP005030 AGAP005030-RA RT Yes Ancient Unbiased No FBtr0086765 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:14167554-14167681+chr2R:14167751-14167766&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301547 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:8587973-8588076+chr2L:8588146-8588161&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005030-RA FBtr0301669 FBgn0000964 tj-RB D. melanogaster dm3 dmel_r5.57 chr2L:19466292-19466423 + 44 TGA-C TGA Preliminary EOG77TBNC AGAP010030 No Comparison Unbiased FBtr0081239 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:19466292-19466423&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301669 FBtr0301687 FBgn0033058 CCHa2-R-RB D. melanogaster dm3 dmel_r5.57 chr2R:1955220-1955291 + 24 TGA-G TGA EOG7Q5TWK AGAP003631 AGAP003631-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:1955220-1955291&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301687 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:40725832-40725963&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003631-RA FBtr0301701 FBgn0024150 Ac78C-RB D. melanogaster dm3 dmel_r5.57 chr3L:21130180-21130206 - 9 TAG-C TAG Preliminary EOG7BCZTP AGAP002262 AGAP002262-RA Non-RT No Comparison Unbiased FBtr0078322 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:21130180-21130206&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301701 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:18298996-18299058&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002262-RA FBtr0301748 FBgn0260970 CG42593-RA D. melanogaster dm3 dmel_r5.57 chrX:7846279-7846329 + 17 TGA-A TGA Preliminary EOG767DSR AGAP000384 No Comparison Unbiased FBtr0273429 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:7846279-7846329&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0301748 FBtr0302696 FBgn0261553 CG42671-RB D. melanogaster dm3 dmel_r5.57 chr3L:11220810-11220842 + 11 TGA-C TGA Preliminary EOG72K6ZK AGAP011070 No Comparison Unbiased FBtr0076166 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:11219849-11219901+chr3L:11220773-11220842&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0302696 FBtr0303080 FBgn0261698 CG42732-RD D. melanogaster dm3 dmel_r5.57 chr2R:6211226-6211285 - 20 TGA-T TGA Preliminary Double 15 EOG7CP8XV AGAP007585 AGAP007585-RA RT Yes Ancient Unbiased No FBtr0290090 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:6211181-6211285&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0303080 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:47839470-47839529&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007585-RA FBtr0303429 FBgn0261854 aPKC-RB D. melanogaster dm3 dmel_r5.57 chr2R:10833569-10833922+chr2R:10833982-10834020 - 131 TGA-C TGA Preliminary EOG7389N2 AGAP011988 AGAP011988-RF RT Yes Ancient Unbiased No FBtr0110995 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:10833569-10833922+chr2R:10833982-10834108+chr2R:10834684-10834685&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0303429 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:35903071-35903190+chr3L:35905437-35905547+chr3L:35909678-35909695&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011988-RF FBtr0303603 FBgn0261929 5-HT2B-RD D. melanogaster dm3 dmel_r5.57 chr3R:4452744-4452872 + 43 TAA-C TAA,TAG Preliminary EOG735FD0 AGAP002229 No Comparison Unbiased FBtr0081876 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:4452744-4452872&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0303603 FBtr0303749 FBgn0261934 dikar-RC D. melanogaster dm3 dmel_r5.57 chr3L:6723454-6723570 - 39 TAG-C TAG Preliminary EOG7JMSWH No Comparison Unbiased FBtr0076955 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:6723454-6723570&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0303749 FBtr0304120 FBgn0262139 trh-RA D. melanogaster dm3 dmel_r5.57 chr3L:367390-367581 - 64 TAG-G TAG Preliminary EOG7CS567 AGAP000056 No Comparison Unbiased FBtr0072567 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:367390-367581&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0304120 FBtr0305009 FBgn0262562 CG43102-RA D. melanogaster dm3 dmel_r5.57 chr3R:13595756-13595815 - 20 TGA-A TGA Preliminary EOG7BPKJK AGAP003854 AGAP003854-RA Non-RT No Comparison Unbiased FBtr0083531 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:13595756-13595815&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0305009 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:44570603-44570635&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003854-RA FBtr0305480 FBgn0023095 caps-RD D. melanogaster dm3 dmel_r5.57 chr3L:13271132-13271224 + 31 TGA-T TGA Preliminary EOG75N6C5 AGAP011378 No Comparison Unbiased FBtr0111005 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:13271132-13271224&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0305480 FBtr0306199 FBgn0262869 Gfrl-RE D. melanogaster dm3 dmel_r5.57 chr3R:16207021-16207035 - 5 TGA-C TGA Preliminary EOG7GFNN5 AGAP003479 AGAP003479-RA RT Yes Ancient Unbiased No FBtr0300110 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:16207021-16207035&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0306199 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:38407148-38407168&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003479-RA FBtr0306744 FBgn0262975 cnc-RF D. melanogaster dm3 dmel_r5.57 chr3R:19013025-19013165 - 47 TGA-A TGA Preliminary EOG7FZ9FB AGAP005300 AGAP005300-RC Ambiguous No Unbiased FBtr0084392 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:19013025-19013165&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0306744 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:13816642-13816701&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005300-RC FBtr0307040 FBgn0031698 Ncoa6-RC D. melanogaster dm3 dmel_r5.57 chr2L:5317210-5317812 - 201 TGA-C TGA Preliminary EOG76MWRC AGAP007771 No Comparison Unbiased FBtr0079081 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:5317210-5317874+chr2L:5317933-5317960&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0307040 FBtr0307207 FBgn0030613 Rab3-GEF-RC D. melanogaster dm3 dmel_r5.57 chrX:15006076-15006252 + 59 TGA-C TGA Preliminary EOG7QVXJQ AGAP000630 AGAP000630-RA Non-RT No Comparison Unbiased FBtr0073993 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:15006076-15006252&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0307207 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:11335092-11335151&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000630-RA FBtr0307301 FBgn0263108 BtbVII-RA D. melanogaster dm3 dmel_r5.57 chr3L:3153534-3153752 + 73 TAG-A TAG Preliminary EOG7SJQN8 AGAP006453 No Comparison Unbiased FBtr0073024 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:3153534-3153752&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0307301 FBtr0307876 FBgn0263220 Hk-RD D. melanogaster dm3 dmel_r5.57 chrX:10133330-10133476 - 49 TGA-C TGA Preliminary EOG7428JR AGAP010067 AGAP010067-RA RT Yes Ancient Unbiased No FBtr0089804 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:10133330-10133476&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0307876 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:48569145-48569279&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010067-RA FBtr0308028 FBgn0083981 RunxA-RB D. melanogaster dm3 dmel_r5.57 chrX:20463153-20463188 - 12 TGA-G TGA Preliminary EOG7Z9H3M AGAP012451 AGAP012451-RA Ambiguous No Unbiased FBtr0110992 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:20463153-20463188&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0308028 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrUNKN:2642052-2642147&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012451-RA FBtr0308342 FBgn0085434 NaCP60E-RG D. melanogaster dm3 dmel_r5.57 chr2R:20805668-20805823 + 52 TGA-C TGA Preliminary EOG7FRJZD AGAP007086 No Comparison Unbiased FBtr0112670 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:20805668-20805823&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0308342 FBtr0309867 FBgn0028875 nAChRalpha5-RH D. melanogaster dm3 dmel_r5.57 chr2L:14089261-14089347 + 29 TAG-C TAG EOG78T214 AGAP008588 AGAP008588-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:14089261-14089347&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0309867 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:13330756-13330839&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008588-RA FBtr0310335 FBgn0263706 CG43658-RC D. melanogaster dm3 dmel_r5.57 chrX:17351939-17352253 - 105 TAA-T TAA Preliminary RNA Structure EOG74Z3PG AGAP013265 AGAP013265-RA Non-RT No Comparison Unbiased FBtr0074434 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:17351939-17352253&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0310335 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:8705204-8705275&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013265-RA FBtr0321304 FBgn0263846 CG43707-RD D. melanogaster dm3 dmel_r5.57 chr2L:3768192-3768269 + 26 TAA-C TAA Preliminary EOG7NH1TC AGAP008221 AGAP008221-RA RT Yes Ancient Unbiased No FBtr0077489 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:3768040-3768077+chr2L:3768140-3768269&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0321304 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:7043474-7043511+chr3R:7044223-7044307&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008221-RA FBtr0329856 FBgn0263934 esn-RB D. melanogaster dm3 dmel_r5.57 chr2R:3014333-3014530 + 66 TGA-C TGA Preliminary EOG7RRRQM AGAP007648 AGAP007648-RA Non-RT No Comparison Unbiased FBtr0089038 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:3014333-3014530&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0329856 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:48750264-48750395&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007648-RA FBtr0329987 FBgn0032911 tadr-RC D. melanogaster dm3 dmel_r5.57 chr2L:21080753-21080854 + 34 TGA-C TGA Preliminary RNA Structure EOG7DG7VN AGAP009531 AGAP009531-RA Non-RT No Comparison Unbiased FBtr0081462 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:21080753-21080854&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0329987 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:35415683-35415700&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009531-RA FBtr0330010 FBgn0263980 CG43729-RE D. melanogaster dm3 dmel_r5.57 chr2R:11354444-11356798 + 785 TGA-C TGA Preliminary Double 19 EOG74NGZQ AGAP005258 No Comparison Unbiased FBtr0112517 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:11354444-11356855&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330010 FBtr0330012 FBgn0263980 CG43729-RI D. melanogaster dm3 dmel_r5.57 chr2R:11356799-11356855 + 19 TGA-T TGA Preliminary EOG74NGZQ AGAP005258 No Comparison Unbiased FBtr0087325 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:11356799-11356855&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330012 FBtr0330059 FBgn0086680 vvl-RC D. melanogaster dm3 dmel_r5.57 chr3L:6786068-6786106 + 13 TAG-C TAG Preliminary Double 16 RNA Structure EOG764JK9 AGAP005878 No Comparison Unbiased FBtr0300260 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:6786068-6786154&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330059 FBtr0330091 FBgn0036851 CG14082-RC D. melanogaster dm3 dmel_r5.57 chr3L:19100204-19100374 - 57 TGA-G TGA Preliminary EOG73C5X3 AGAP011935 AGAP011935-RA RT Yes Ancient Unbiased No FBtr0075031 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:19100204-19100374&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330091 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:35264366-35264497&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011935-RA FBtr0330108 FBgn0039536 unc80-RC D. melanogaster dm3 dmel_r5.57 chr3R:23502618-23502653 + 12 TAA-C TAA Preliminary EOG7X4270 AGAP001566 AGAP001566-RB Non-RT No Comparison Unbiased FBtr0273246 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:23502618-23502653&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330108 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:6307969-6308196&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001566-RB FBtr0330205 FBgn0261444 CG3638-RG D. melanogaster dm3 dmel_r5.57 chrX:1112994-1113737 - 248 TAG-G TAG Preliminary RNA Structure EOG7VF85J AGAP000860 No Comparison Unbiased FBtr0070247 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:1112994-1113737&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330205 FBtr0330241 FBgn0259145 CG42260-RD D. melanogaster dm3 dmel_r5.57 chr2R:18631317-18631376 - 20 TAA-C TAA EOG7X9SPZ AGAP007008 AGAP007008-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:18631317-18631376&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330241 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:40792437-40792493&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007008-RA FBtr0330271 FBgn0263995 cpo-RP D. melanogaster dm3 dmel_r5.57 chr3R:13839189-13839338 + 50 TGA-C TGA Preliminary EOG79H4Q8 AGAP013145 No Comparison Unbiased FBtr0300244 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:13839189-13839338&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330271 FBtr0330294 FBgn0039673 CG7568-RD D. melanogaster dm3 dmel_r5.57 chr3R:25424974-25425018 - 15 TGA-T TGA Preliminary EOG7SFVD9 AGAP009574 AGAP009574-RA RT Yes Ancient Unbiased No FBtr0113306 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:25424974-25425018&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330294 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:36380870-36380950&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP009574-RA FBtr0330303 FBgn0264324 spg-RD D. melanogaster dm3 dmel_r5.57 chr3R:24694786-24695340 + 185 TGA-G TGA Preliminary EOG72VTNZ AGAP004507 AGAP004507-RB Non-RT No Comparison Unbiased FBtr0289997 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:24694786-24695340&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330303 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:57163217-57163342&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004507-RB FBtr0330312 FBgn0038603 PKD-RF D. melanogaster dm3 dmel_r5.57 chr3R:14129378-14129587 - 70 TGA-C TGA EOG706B6Z AGAP000070 AGAP000070-RA RT No Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14129378-14129587&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330312 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:1099833-1100126&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000070-RA FBtr0330340 FBgn0264000 GluRIB-RA D. melanogaster dm3 dmel_r5.57 chr3L:9278482-9278511 + 10 TGA-C TGA Preliminary Double 77 EOG7CP8XX AGAP006026 No Comparison Unbiased FBtr0076431 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:9278482-9278742&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330340 FBtr0330358 FBgn0264002 MsR2-RA D. melanogaster dm3 dmel_r5.57 chr3L:2300047-2300523 + 159 TAG-C TAG Preliminary EOG70SJNX AGAP005229 AGAP005229-RA RT No Unbiased No FBtr0072885 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:2300047-2300523&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330358 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:12549161-12549283&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005229-RA FBtr0330414 FBgn0264006 dysc-RC D. melanogaster dm3 dmel_r5.57 chr3L:13865037-13865828 - 264 TAA-C TAA Preliminary EOG79PW67 AGAP010778 No Comparison Unbiased FBtr0290126 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:13865037-13865828&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330414 FBtr0330733 FBgn0264089 sli-RE D. melanogaster dm3 dmel_r5.57 chr2R:11758925-11760883 - 653 TGA-C TGA EOG79SRD4 AGAP002793 AGAP002793-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:11758925-11760970+chr2R:11761040-11761042&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0330733 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:27628311-27628313+chr2R:27628406-27630781&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002793-RA FBtr0331156 FBgn0264090 CG43759-RA D. melanogaster dm3 dmel_r5.57 chrX:18907382-18907432+chrX:18919648-18920091 + 165 TGA-T TGA Preliminary EOG72RZFN No Comparison Unbiased FBtr0074650 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:18907382-18907432+chrX:18919648-18920091&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0331156 FBtr0331167 FBgn0259150 CG42265-RD D. melanogaster dm3 dmel_r5.57 chrX:5547491-5547550 - 20 TGA-G TGA Preliminary RNA Structure EOG7RVMZ8 AGAP000702 No Comparison Unbiased FBtr0299597 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:5547491-5547550&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0331167 FBtr0331168 FBgn0259150 CG42265-RE D. melanogaster dm3 dmel_r5.57 chrX:5547551-5547913 - 121 TGA-G TGA Preliminary EOG7RVMZ8 AGAP000702 No Comparison Unbiased FBtr0299598 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:5547551-5547913&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0331168 FBtr0331247 FBgn0264270 Sxl-RW D. melanogaster dm3 dmel_r5.57 chrX:6972268-6973335 - 356 TAA-T TAA Preliminary EOG70PPFJ AGAP003899 AGAP003899-RB Non-RT No Comparison Unbiased FBtr0100208 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:6972268-6973400+chrX:6978632-6978656&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0331247 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:45711410-45711484&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003899-RB FBtr0331515 FBgn0264307 orb2-RH D. melanogaster dm3 dmel_r5.57 chr3L:8935976-8935990 - 5 TAA-C TAA EOG7K71BK AGAP002296 AGAP002296-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:8935976-8935990&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0331515 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:18702388-18703200&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002296-RA FBtr0331966 FBgn0050497 CG30497-RD D. melanogaster dm3 dmel_r5.57 chr2R:3627092-3627781 - 230 TGA-T TGA EOG7T22TW AGAP005088 AGAP005088-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:3627092-3627781&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0331966 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:9877087-9877629&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005088-RA FBtr0332105 FBgn0052451 SPoCk-RG D. melanogaster dm3 dmel_r5.57 chr3L:22777588-22777632 + 15 TGA-C TGA EOG78M9J1 AGAP012115 AGAP012115-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:22777588-22777632&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332105 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:37774109-37774150&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012115-RA FBtr0332196 FBgn0000413 da-RC D. melanogaster dm3 dmel_r5.57 chr2L:10392195-10392389 + 65 TAG-C TAA,TAG EOG7X6XGT AGAP008814 AGAP008814-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:10392195-10392389&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332196 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:18283942-18283989+chr3R:18284251-18284325&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008814-RA FBtr0332376 FBgn0086691 UK114-RB D. melanogaster dm3 dmel_r5.57 chr2L:15274245-15274268 - 8 TAG-C TAG EOG77TBNW AGAP005327 AGAP005327-RA RT No Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:15274245-15274268&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332376 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:14115470-14115487&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005327-RA FBtr0332391 FBgn0263111 cac-RP D. melanogaster dm3 dmel_r5.57 chrX:11830066-11830077 - 4 TAG-C TAG EOG7VXMBW AGAP002578 AGAP002578-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:11830066-11830077&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332391 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:23163838-23163894&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002578-RA FBtr0332841 FBgn0004373 fwd-RD D. melanogaster dm3 dmel_r5.57 chr3L:306335-306358 - 8 TGA-G TGA EOG7NKX29 AGAP007512 AGAP007512-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:306335-306358&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0332841 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:47106986-47107009&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007512-RA FBtr0333134 FBgn0035477 CG14982-RC D. melanogaster dm3 dmel_r5.57 chr3L:3946152-3946202 + 17 TGA-G TGA EOG7M6QR1 AGAP005440 AGAP005440-RA RT No Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:3946152-3946202&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333134 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:15477310-15477390&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005440-RA FBtr0333160 FBgn0085430 CG34401-RB D. melanogaster dm3 dmel_r5.57 chrX:18772155-18772958 + 268 TGA-C TGA EOG796HZK AGAP000314 AGAP000314-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:18772003-18772025+chrX:18772088-18772958&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333160 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:5511709-5514097+chrX:5514160-5514188&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000314-RA FBtr0333165 FBgn0265974 ttv-RC D. melanogaster dm3 dmel_r5.57 chr2R:10471732-10471767 + 12 TAG-C TAG EOG7SNKVJ AGAP010388 AGAP010388-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:10471732-10471767&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333165 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:2456283-2456303&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP010388-RA FBtr0333223 FBgn0011817 nmo-RH D. melanogaster dm3 dmel_r5.57 chr3L:8043024-8043050 + 9 TGA-C TGA EOG7NSNJT AGAP005898 AGAP005898-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:8040666-8040700+chr3L:8042969-8043050&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333223 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:23425942-23425976+chr2L:23429963-23430041&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005898-RA FBtr0333831 FBgn0051122 CG31122-RC D. melanogaster dm3 dmel_r5.57 chr3R:14233187-14233603 - 139 TGA-C TGA EOG7DRVKS AGAP000078 AGAP000078-RA RT No Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:14233187-14233603&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0333831 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:1264682-1264726&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000078-RA FBtr0334072 FBgn0035267 CG13921-RF D. melanogaster dm3 dmel_r5.57 chr3L:1751808-1751837 + 10 TGA-G TGA EOG71PCT0 AGAP005633 AGAP005633-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:1751808-1751837&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0334072 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:18044209-18044226&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005633-RA FBtr0335187 FBgn0264954 fd3F-RC D. melanogaster dm3 dmel_r5.57 chrX:3704543-3704602 + 20 TGA-C TGA EOG7C32J9 AGAP012976 AGAP012976-RA RT No Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:3704543-3704602&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0335187 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:9600985-9601194&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP012976-RA FBtr0335239 FBgn0085386 CG34357-RD D. melanogaster dm3 dmel_r5.57 chr3R:319114-319125 - 4 TAG-G TAG EOG7B67BW AGAP002233 AGAP002233-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:319114-319125&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0335239 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:17959130-17959162&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002233-RA FBtr0336459 FBgn0051145 CG31145-RF D. melanogaster dm3 dmel_r5.57 chr3R:19432567-19432572 - 2 TAG-C TAG EOG7BCZV0 AGAP002913 AGAP002913-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:19432567-19432572&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0336459 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:29228405-29228611&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002913-RA FBtr0336922 FBgn0030151 CG1354-RE D. melanogaster dm3 dmel_r5.57 chrX:9675762-9675851 + 30 TGA-T TGA EOG735FDD AGAP000672 AGAP000672-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:9675762-9675851&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0336922 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chrX:11856370-11856459&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP000672-RA FBtr0339815 FBgn0029939 CG9650-RJ D. melanogaster dm3 dmel_r5.57 chrX:7133936-7134058 + 41 TGA-C TGA EOG7FZ9FS AGAP002610 AGAP002610-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:7133936-7134058&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0339815 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:24057081-24057143&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002610-RA FBtr0339974 FBgn0259821 CG42402-RE D. melanogaster dm3 dmel_r5.57 chr3RHet:2446598-2446729 + 44 TGA-C TGA EOG7BKQB5 AGAP003572 AGAP003572-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3RHet:2446598-2446729&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0339974 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:39982953-39983405&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003572-RA FBtr0340041 FBgn0030701 CG16952-RE D. melanogaster dm3 dmel_r5.57 chrX:15769445-15769495 + 17 TAG-A TAG EOG7RZH62 AGAP002951 AGAP002951-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:15769445-15769495&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0340041 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:30068042-30068095&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002951-RA FBtr0340208 FBgn0023524 CG3078-RB D. melanogaster dm3 dmel_r5.57 chrX:2149755-2149772 - 6 TGA-C TGA EOG7161MK AGAP001337 AGAP001337-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:2149755-2149772&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0340208 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:3311393-3311443&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP001337-RA FBtr0340341 FBgn0026206 mei-P26-RE D. melanogaster dm3 dmel_r5.57 chrX:9064849-9065211 + 121 TGA-T TGA EOG7WQK8D AGAP002344 AGAP002344-RA RT No Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:9064849-9065211&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0340341 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:20488300-20488338&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP002344-RA FBtr0342800 FBgn0015524 otp-RK D. melanogaster dm3 dmel_r5.57 chr2R:16771955-16771996 - 14 TGA-A TGA EOG74RC7H AGAP005099 AGAP005099-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:16771955-16771996&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0342800 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:10113494-10113511&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005099-RA FBtr0342895 FBgn0010415 Sdc-RK D. melanogaster dm3 dmel_r5.57 chr2R:17282041-17282067 - 9 TGA-G TGA EOG7SC067 AGAP007657 AGAP007657-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:17282041-17282067&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0342895 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:48814615-48814650&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007657-RA FBtr0343043 FBgn0003204 ras-RE D. melanogaster dm3 dmel_r5.57 chrX:10642237-10642395 + 53 TAA-C TAA EOG79PW5G AGAP011133 AGAP011133-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:10642237-10642395&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343043 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3L:17694780-17694812&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP011133-RA FBtr0343361 FBgn0040344 CG3711-RE D. melanogaster dm3 dmel_r5.57 chrX:818178-818246 - 23 TGA-A TGA Preliminary EOG7KMH8V AGAP004292 AGAP004292-RA Ambiguous No Unbiased FBtr0070191 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:818178-818246&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343361 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:54134742-54134750&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004292-RA FBtr0343525 FBgn0027287 Gmap-RC D. melanogaster dm3 dmel_r5.57 chrX:15404435-15404443 + 3 TGA-T TGA EOG74BW85 AGAP003457 AGAP003457-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:15404435-15404443&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343525 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:37886773-37886802&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003457-RA FBtr0343552 FBgn0266100 CG44837-RB D. melanogaster dm3 dmel_r5.57 chr3L:11844611-11844805 - 65 TGA-C TGA Preliminary EOG7GV4M3 No Comparison Unbiased FBtr0112716 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:11844611-11844805&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343552 FBtr0343801 FBgn0264908 pHCl-RR D. melanogaster dm3 dmel_r5.57 chr3L:15844846-15844851 - 2 TAA-A TAA EOG7JHXNH AGAP005599 AGAP005599-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:15844846-15844851&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0343801 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:17739676-17739729&strand=+&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP005599-RA FBtr0344096 FBgn0266354 CG45002-RJ D. melanogaster dm3 dmel_r5.57 chrX:16866729-16867067 - 113 TAA-T TAA Preliminary EOG786TK8 No Comparison Unbiased FBtr0299585 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:16866729-16867067&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0344096 FBtr0344146 FBgn0261509 haf-RF D. melanogaster dm3 dmel_r5.57 chr2L:1606520-1606540 + 7 TGA-G TGA EOG7ND5KH AGAP007846 AGAP007846-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:1606520-1606540&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0344146 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:1865808-1866227&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007846-RA FBtr0344176 FBgn0266377 Pde8-RC D. melanogaster dm3 dmel_r5.57 chr2R:19566213-19566317 + 35 TAG-C TAG Preliminary EOG70WDWF AGAP007163 AGAP007163-RB Non-RT No Comparison Unbiased FBtr0072074 http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:19566213-19566317&strand=+&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0344176 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:43619545-43619547&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007163-RB FBtr0344622 FBgn0053096 CG33096-RG D. melanogaster dm3 dmel_r5.57 chr3R:20925002-20925182+chr3R:20925664-20925719 + 79 TGA-C TGA EOG75BKP4 AGAP013018 AGAP013018-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3R:20924624-20924629+chr3R:20924918-20925182+chr3R:20925664-20925719&strand=+&startTrPos=91&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0344622 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:21595989-21598709+chr2R:21598787-21598792&strand=-&startTrPos=91&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP013018-RA FBtr0345072 FBgn0263257 Cngl-RJ D. melanogaster dm3 dmel_r5.57 chrX:15283645-15283653 - 3 TGA-G TGA EOG7R2P1P AGAP003349 AGAP003349-RB RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chrX:15283645-15283653&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0345072 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2R:36361975-36362133&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP003349-RB FBtr0345369 FBgn0000017 Abl-RJ D. melanogaster dm3 dmel_r5.57 chr3L:16615790-16615873 - 28 TAA-A TAA EOG7V1S6H AGAP004989 AGAP004989-RA RT Yes Ancient Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr3L:16615790-16615873&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0345369 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:7555596-7555634&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP004989-RA FBtr0345432 FBgn0264443 CG43861-RD D. melanogaster dm3 dmel_r5.57 chr2L:19969743-19970036 - 98 TGA-C TGA EOG7NSNK6 AGAP008826 AGAP008826-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2L:19969743-19970036&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0345432 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr3R:18934239-18934280&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP008826-RA FBtr0346633 FBgn0045063 fdl-RF D. melanogaster dm3 dmel_r5.57 chr2R:8375933-8375944 - 4 TGA-T TGA EOG75R2M5 AGAP007080 AGAP007080-RA RT Yes Ancient Unbiased Yes http://broadinstitute.org/compbio1/cav.php?alnset=dm3&interval=chr2R:8375933-8375944&strand=-&prologue=90&epilogue=90&spliceSites=dm&hideInserts&showCoords&rfc=start&footer=FBtr0346633 http://broadinstitute.org/compbio1/cav.php?alnset=AgamP3&interval=chr2L:42229998-42230021&strand=-&prologue=90&epilogue=90&spliceSites=AgamP&hideInserts&showCoords&rfc=start&footer=AGAP007080-RA