Comparative genomic workflow
Name
Rajapakse-2009-Comparative genomic workflow.pdf
Size
724.42 KB
Format
Adobe PDF
Checksum (MD5)
b2dde6f8768a0c284b5cd32f697fd625
Author(s)
Rajapakse, Jagath
Pooja
Chen, Chunxi
Ho, Sy-Loi
Date Issued
July 2009
Journal
IEEE Engineering in Medicine and Biology Magazine
Publisher
Institute of Electrical and Electronics Engineers
Citation
Rajapakse, J. et al. “Comparative genomic workflow.” Engineering in Medicine and Biology Magazine, IEEE 28.4 (2009): 19-24. ©2009 IEEE.
Version
Final published version
Abstract
his article describes a workflow for identifying conserved patterns in noncoding regions of vertebrate genomes, with an intention of investigating possible functions of the conserved regions. The annotations of genomes are collected from the Ensembl database. The sequences are then arranged to use for sequence alignment with basic local alignment search tool Z (BLASTZ) [10], which finds gap- free alignments of at least q% identity and I b/s in length. All the conserved noncoding regions identified are stored in a relational database. An user-friendly Web interface provides easy access to conserved regions and related information and visualization capabilities.
MIT Department
Massachusetts Institute of Technology. Department of Biological Engineering
Terms of Use
Article is made available in accordance with the publisher's policy and may be subject to US copyright law. Please refer to the publisher's site for terms of use.
Persistent DSpace Link
DOI of Published Version
https://doi.org/10.1109/MEMB.2009.932910
