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RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss

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Author(s)
Bansal, Mukul S
•
Kellis, Manolis
•
Kordi, Misagh
•
Kundu, Soumya
Date Issued
2018
Journal
Bioinformatics
Publisher
Oxford University Press (OUP)
Version
Final published version
Abstract
© The Author(s) 2018. Published by Oxford University Press. RANGER-DTL 2.0 is a software program for inferring gene family evolution using Duplication-Transfer-Loss reconciliation. This new software is highly scalable and easy to use, and offers many new features not currently available in any other reconciliation program. RANGER-DTL 2.0 has a particular focus on reconciliation accuracy and can account for many sources of reconciliation uncertainty including uncertain gene tree rooting, gene tree topological uncertainty, multiple optimal reconciliations and alternative event cost assignments. RANGER-DTL 2.0 is open-source and written in C++ and Python.
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Creative Commons Attribution NonCommercial License 4.0
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DOI of Published Version
10.1093/BIOINFORMATICS/BTY314
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