Introducing meta-services for biomedical information extraction
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Hoffmann_Introducing metaservices.pdf
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1.74 MB
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Adobe PDF
Checksum (MD5)
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Author(s)
Leitner, Florian
Krallinger, Martin
Rodriguez-Penagos, Carlos
Hakenberg, Jorg
Plake, Conrad
Kuo, Cheng-Ju
Hsu, Chun-Nan
Tsai, Richard Tzong-Han
Hung, Hsi-Chuan
Lau, William W.
Date Issued
September 2008
Journal
Genome Biology
Publisher
BioMed Central Ltd.
Citation
F. Leitner, M. Krallinger, C. Rodriguez-Penagos, J. Hakenberg, C. Plake, C. Kuo, C. Hsu, R. Tsai, H. Hung, W. Lau, C. Johnson, R. Saetre, K. Yoshida, Y. Chen, S. Kim, S. Shin, B. Zhang, W. Baumgartner, L. Hunter, B. Haddow, M. Matthews, X. Wang, P. Ruch, F. Ehrler, A. Ozgur, G. Erkan, D. Radev, M. Krauthammer, T. Luong, R. Hoffmann, C. Sander, and A. Valencia, “Introducing meta-services for biomedical information extraction,” Genome Biology, vol. 9, 2008, p. S6.
Version
Final published version
Abstract
We introduce the first meta-service for information extraction in molecular biology, the BioCreative MetaServer (BCMS; http://bcms.bioinfo.cnio.es/). This prototype platform is a joint effort of 13 research groups and provides automatically generated annotations for PubMed/Medline abstracts. Annotation types cover gene names, gene IDs, species, and protein-protein interactions. The annotations are distributed by the meta-server in both human and machine readable formats (HTML/XML). This service is intended to be used by biomedical researchers and database annotators, and in biomedical language processing. The platform allows direct comparison, unified access, and result aggregation of the annotations.
MIT Department
Massachusetts Institute of Technology. Computer Science and Artificial Intelligence Laboratory
Terms of Use
Creative Commons Attribution
Persistent DSpace Link
DOI of Published Version
https://doi.org/10.1186/gb-2008-9-s2-s6
