Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1
Name
[Journal of Integrative Bioinformatics] Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.pdf
Description
Published version
Size
2.67 MB
Format
Adobe PDF
Checksum (MD5)
f03088f58461e2de554e7c2eed0d9d75
Author(s)
Voigt, Christopher A.
Date Issued
June 2019
Journal
Journal of integrative bioinformatics
Publisher
Walter de Gruyter GmbH
Citation
Madsen, Curtis et al. “Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.” Journal of integrative bioinformatics 16 (2019): 20180101 © 2019 The Author(s)
Version
Final published version
Abstract
People who are engineering biological organisms often find it useful to communicate in diagrams, both about the structure of the nucleic acid sequences that they are engineering and about the functional relationships between sequence features and other molecular species . Some typical practices and conventions have begun to emerge for such diagrams. The Synthetic Biology Open Language Visual (SBOL Visual) has been developed as a standard for organizing and systematizing such conventions in order to produce a coherent language for expressing the structure and function of genetic designs. This document details version 2.1 of SBOL Visual, which builds on the prior SBOL Visual 2.0 standard by expanding diagram syntax to include methods for showing modular structure and mappings between elements of a system, interactions arrows that can split or join (with the glyph at the split or join indicating either superposition or a chemical process), and adding new glyphs for indicating genomic context (e.g., integration into a plasmid or genome) and for stop codons.
MIT Department
Massachusetts Institute of Technology. Department of Biological Engineering
Terms of Use
Creative Commons Attribution 4.0 International license
Persistent DSpace Link
DOI of Published Version
https://doi.org/10.1515/JIB-2018-0101
