Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0
Name
[Journal of Integrative Bioinformatics] Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.pdf
Size
2.44 MB
Format
Adobe PDF
Checksum (MD5)
60bc5f63cadd86891f614fe16902bcdb
Author(s)
Cox, Robert Sidney
Madsen, Curtis
McLaughlin, James
Nguyen, Tramy
Roehner, Nicholas
Bartley, Bryan
Bhatia, Swapnil
Bissell, Mike
Clancy, Kevin
Gorochowski, Thomas
Date Issued
March 2018
Journal
Journal of Integrative Bioinformatics
Publisher
De Gruyter
Citation
Cox, Robert Sidney et al. “Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.” Journal of Integrative Bioinformatics 15, 1 (March 2018): 20170074 © 2018 The Authors
Version
Final published version
Abstract
People who are engineering biological organisms often find it useful to communicate in diagrams, both about the structure of the nucleic acid sequences that they are engineering and about the functional relationships between sequence features and other molecular species. Some typical practices and conventions have begun to emerge for such diagrams. The Synthetic Biology Open Language Visual (SBOL Visual) has been developed as a standard for organizing and systematizing such conventions in order to produce a coherent language for expressing the structure and function of genetic designs. This document details version 2.0 of SBOL Visual, which builds on the prior SBOL Visual 1.0 standard by expanding diagram syntax to include functional interactions and molecular species, making the relationship between diagrams and the SBOL data model explicit, supporting families of symbol variants, clarifying a number of requirements and best practices, and significantly expanding the collection of diagram glyphs.
MIT Department
Massachusetts Institute of Technology. Department of Biological Engineering
Terms of Use
Creative Commons Attribution-NonCommercial-NoDerivs License
Persistent DSpace Link
DOI of Published Version
https://doi.org/10.1515/jib-2017-0074
