Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra
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Hulstaert-2013-Pride-asap_ Automati.pdf
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Author(s)
Hulstaert, Niels
Reisinger, Florian
Rameseder, Jonathan
Barsnes, Harald
Martens, Lennart
Vizcaino, Juan Antonio
Date Issued
April 2013
Journal
Journal of Proteomics
Publisher
Elsevier
Citation
Hulstaert, Niels, Florian Reisinger, Jonathan Rameseder, Harald Barsnes, Juan Antonio Vizcaíno, and Lennart Martens. “Pride-Asap: Automatic Fragment Ion Annotation of Identified PRIDE Spectra.” Journal of Proteomics 95 (December 2013): 89–92. © 2013 Elsevier B.V.
Version
Final published version
Abstract
We present an open source software application and library written in Java that provides a uniform annotation of identified spectra stored in the PRIDE database. Pride-asap can be ran in a command line mode for automated processing of multiple PRIDE experiments, but also has a graphical user interface that allows end users to annotate the spectra in PRIDE experiments and to inspect the results in detail. Pride-asap binaries, source code and additional information can be downloaded from http://pride-asa-pipeline.googlecode.com.This article is part of a Special Issue entitled: Standardization and Quality Control in Proteomics.
MIT Department
Massachusetts Institute of Technology. Computational and Systems Biology Program
Koch Institute for Integrative Cancer Research at MIT
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DOI of Published Version
http://dx.doi.org/10.1016/j.jprot.2013.04.011
