<?xml version="1.0" encoding="UTF-8"?>
<feed xmlns="http://www.w3.org/2005/Atom" xmlns:dc="http://purl.org/dc/elements/1.1/">
<title>mit-6</title>
<link href="http://dspace.mit.edu:80" rel="alternate"/>
<subtitle>The DSpace digital repository system captures, stores, indexes, preserves, and distributes digital research material.</subtitle>
<id xmlns="http://apache.org/cocoon/i18n/2.1">http://dspace.mit.edu:80</id>
<updated>2026-05-14T02:31:43Z</updated>
<dc:date>2026-05-14T02:31:43Z</dc:date>
<entry>
<title>The Non-Union Complaint System at MIT: An Upward-Feedback, Mediation Model</title>
<link href="https://hdl.handle.net/1721.1/165798" rel="alternate"/>
<author>
<name>Rowe, Mary P.</name>
</author>
<id>https://hdl.handle.net/1721.1/165798</id>
<updated>2026-05-05T03:00:59Z</updated>
<published>1983-12-01T00:00:00Z</published>
<summary type="text">The Non-Union Complaint System at MIT: An Upward-Feedback, Mediation Model
Rowe, Mary P.
Many corporations, universities, and other institutions have developed explicit, non-union complaint systems. The non-union complaint system at MIT is similar to those of several hundred other high-technology, white collar, and&#13;
research oriented employers. The similarity is perhaps strongest with respect to what at MIT is called "redundancy": provision of enough, different, responsible channels for complaint that most people will find such a channel easily.&#13;
The MIT complaint system is a mediation-oriented service, available with many other helping services, to all students and to all non-union employees including faculty and managers. It is meant to serve any member of the MIT community who has a concern. The emphasis is on communications, counselling, fact-finding, conciliation, and mediation, with adjudication where necessary. The complaints structure also serves as an explicit “upward-feedback™ channel, designed to help bring information to line managers in an orderly, timely and supportive fashion. This paper sets forth the policy (please see appendix) and a discussion of functions, structure and performance of the MIT complaint system.
This is a very early paper about intra-organizational complaint systems. This is a draft version, and the revised article was subsequently published as:  Mary P. Rowe, "The Non-Union Complaint System at M.I.T.: An Upward-Feedback, Mediation Model," Alternatives to the High Cost of Litigation Vol. 2, No. 4 (April 1984): 10-18.  It was then reprinted in Riskin, Leonard L. and James E. Westbrook, Dispute Resolution and Lawyers, 392-404. St. Paul, MN: West Publishing, 1987. Also found in Westin, Alan F. and Alfred G. Feliu, Resolving Employment Disputes Without Litigation. BNA, 1988.
</summary>
<dc:date>1983-12-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>ENSO and West Pacific Seasonality Driven by the South Asian Monsoon</title>
<link href="https://hdl.handle.net/1721.1/165797" rel="alternate"/>
<author>
<name>Tuckman, PJ</name>
</author>
<author>
<name>Smyth, Jane E</name>
</author>
<author>
<name>Li, Jingyuan</name>
</author>
<author>
<name>Lutsko, Nicholas J</name>
</author>
<author>
<name>Marshall, John</name>
</author>
<id>https://hdl.handle.net/1721.1/165797</id>
<updated>2026-05-05T03:06:49Z</updated>
<published>2025-05-02T00:00:00Z</published>
<summary type="text">ENSO and West Pacific Seasonality Driven by the South Asian Monsoon
Tuckman, PJ; Smyth, Jane E; Li, Jingyuan; Lutsko, Nicholas J; Marshall, John
The equatorial Pacific exhibits a clear seasonal cycle, with West Pacific SSTs being highest during boreal autumn and El Niño/Southern Oscillation (ENSO) events tending to peak during boreal winter. In this work, we use the concept of a monsoonal mode and idealized coupled simulations to show that the presence of a large land mass in the Northern Hemisphere can lead to these seasonal asymmetries. Specifically, warm air moving east from the Asian summer monsoon suppresses surface fluxes in the West Pacific, leading to increased temperature there during the following months. The warmth of the West Pacific in boreal autumn strengthens the Walker circulation and the zonal temperature gradient across the Pacific, leading to the growth of El Niño events during that season. In summary, the presence of the Asian monsoon north of the equator results in ENSO events preferentially growing during boreal autumn and peaking during boreal winter.
</summary>
<dc:date>2025-05-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Diurnal Vegetation Moisture Cycle in the Amazon and Response to Water Stress</title>
<link href="https://hdl.handle.net/1721.1/165796" rel="alternate"/>
<author>
<name>Asgarimehr, Milad</name>
</author>
<author>
<name>Entekhabi, Dara</name>
</author>
<author>
<name>Camps, Adriano</name>
</author>
<id>https://hdl.handle.net/1721.1/165796</id>
<updated>2026-05-05T03:05:07Z</updated>
<published>2024-10-08T00:00:00Z</published>
<summary type="text">Diurnal Vegetation Moisture Cycle in the Amazon and Response to Water Stress
Asgarimehr, Milad; Entekhabi, Dara; Camps, Adriano
Water stress in the Amazon is exacerbated by rising temperatures and reduced moisture levels. However, understanding forest responses to increased aridity is hindered by limited in situ water potential observations in the Amazon. Remote sensing of water content has emerged as a promising metric. Vegetation Water Content (VWC) diurnal dynamics is hypothesized to reflect water stress responses. Conventional sensors' low sampling rates impede capturing and studying sub‐daily VWC dynamics. Leveraging Global Navigation Satellite System Reflectometry (GNSS‐R) with unprecedented sampling rates, this study reveals significant disparities in morning and evening VWCs in the Amazon, for example, by 1.1 and 1.0 kg/ during the wet and dry seasons of 2019. A strong correlation  between VWC (the difference between evening and morning VWCs) and vapor pressure deficit is observed in Amazonian peatland. This highlights the potential of VWC from innovative remote sensing techniques in elucidating water stress dynamics in critical ecosystems.
</summary>
<dc:date>2024-10-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dust Source Areas and Their Plume Extent Derived From Satellite Data Fields</title>
<link href="https://hdl.handle.net/1721.1/165795" rel="alternate"/>
<author>
<name>AlNasser, Faisal</name>
</author>
<author>
<name>Chehbouni, Abdelghani</name>
</author>
<author>
<name>Entekhabi, Dara</name>
</author>
<id>https://hdl.handle.net/1721.1/165795</id>
<updated>2026-05-05T03:07:01Z</updated>
<published>2024-08-23T00:00:00Z</published>
<summary type="text">Dust Source Areas and Their Plume Extent Derived From Satellite Data Fields
AlNasser, Faisal; Chehbouni, Abdelghani; Entekhabi, Dara
In this study, prominent dust source areas are identified along with their plume extent using high temporal frequency satellite observations. Hourly dust plume observations of the Dust Belt from geostationary‐orbit satellites are analyzed for the 2017‐12–2022‐11 period. To identify dust source areas and their extents, we back‐track plumes to their source, assessing source areas in terms of emission frequency, contribution, and plume extent patterns. This method advances over traditional source allocation techniques that rely on polar‐orbiting satellites based on a few daily passes and meteorological wind fields for backtracking. Our findings indicate that Boreal summer is the most intense season for most sources, except in the Southern Sahara, which experiences winterly winds. Our analysis also reveals significant contributions from regions within the Sahara that experience expansive but infrequent dust storms, highlighting the importance of considering both frequency and magnitude in understanding dust emissions.
</summary>
<dc:date>2024-08-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Contrasting Chlorine Chemistry on Volcanic and Wildfire Aerosols in the Southern Mid‐Latitude Lower Stratosphere</title>
<link href="https://hdl.handle.net/1721.1/165794" rel="alternate"/>
<author>
<name>Wang, Peidong</name>
</author>
<author>
<name>Solomon, Susan</name>
</author>
<id>https://hdl.handle.net/1721.1/165794</id>
<updated>2026-05-05T03:07:20Z</updated>
<published>2024-09-11T00:00:00Z</published>
<summary type="text">Contrasting Chlorine Chemistry on Volcanic and Wildfire Aerosols in the Southern Mid‐Latitude Lower Stratosphere
Wang, Peidong; Solomon, Susan
Volcanic eruptions and wildfires can impact stratospheric chemistry. We apply tracer‐tracer correlations to satellite data from Atmospheric Chemistry Experiment—Fourier Transform Spectrometer and the Halogen Occultation Experiment at 68 hPa to consistently compare the chemical impact on HCl after multiple wildfires and volcanic eruptions of different magnitudes. The 2020 Australian New Year (ANY) fire displayed an order of magnitude less stratospheric aerosol extinction than the 1991 Pinatubo eruption, but showed similar large changes in mid‐latitude lower stratosphere HCl. While the mid‐latitude aerosol loadings from the 2015 Calbuco and 2022 Hunga volcanic eruptions were similar to the ANY fire, little impact on HCl occurred. The 2009 Australian Black Saturday fire and 2021 smoke remaining from 2020 yield small HCl changes, at the edge of the detection method. These observed contrasts across events highlight greater reactivity for smoke versus volcanic aerosols at warm temperatures.
</summary>
<dc:date>2024-09-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>The South Pole‐Aitken Basin: Constraints on Impact Excavation, Melt, and Ejecta</title>
<link href="https://hdl.handle.net/1721.1/165793" rel="alternate"/>
<author>
<name>Citron, RI</name>
</author>
<author>
<name>Smith, DE</name>
</author>
<author>
<name>Stewart, ST</name>
</author>
<author>
<name>Hood, LL</name>
</author>
<author>
<name>Zuber, MT</name>
</author>
<id>https://hdl.handle.net/1721.1/165793</id>
<updated>2026-05-05T03:06:47Z</updated>
<published>2024-07-22T00:00:00Z</published>
<summary type="text">The South Pole‐Aitken Basin: Constraints on Impact Excavation, Melt, and Ejecta
Citron, RI; Smith, DE; Stewart, ST; Hood, LL; Zuber, MT
The formation and evolution of the South Pole‐Aitken (SPA) basin is critical to relating large impact basin formation and modification to lunar geophysical evolution. Most prior models of the SPA impact were conducted in 2D, making it difficult to compare model output to the 3D crustal structure and ejecta distribution. In order to better constrain the parameters of the SPA impactor and the expected post impact distribution of crust and ejecta, we conducted numerical simulations of the SPA impact in 3D. We tested a wide range of impact parameters and constrained model results with recent geophysical data. We found the crustal structure of the SPA basin is best fit by an oblique impact (30–45°) of a 350–400 km diameter projectile impacting at 12–16 km/s. The impact excavated material from as deep as 80–120 km, and ejecta was deposited in a butterfly pattern with a forbidden region uprange of the impact.
</summary>
<dc:date>2024-07-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Vegetation‐Generated Turbulence Does Not Impact the Erosion of Natural Cohesive Sediment</title>
<link href="https://hdl.handle.net/1721.1/165792" rel="alternate"/>
<author>
<name>Deitrick, Autumn R</name>
</author>
<author>
<name>Ralston, David K</name>
</author>
<author>
<name>Esposito, Christopher R</name>
</author>
<author>
<name>Baustian, Melissa M</name>
</author>
<author>
<name>Burgos, Maricel Beltrán</name>
</author>
<author>
<name>Courtois, Andrew J</name>
</author>
<author>
<name>Nepf, Heidi</name>
</author>
<id>https://hdl.handle.net/1721.1/165792</id>
<updated>2026-05-05T03:06:21Z</updated>
<published>2024-07-10T00:00:00Z</published>
<summary type="text">Vegetation‐Generated Turbulence Does Not Impact the Erosion of Natural Cohesive Sediment
Deitrick, Autumn R; Ralston, David K; Esposito, Christopher R; Baustian, Melissa M; Burgos, Maricel Beltrán; Courtois, Andrew J; Nepf, Heidi
Previous studies have demonstrated that vegetation‐generated turbulence can enhance erosion rate and reduce the velocity threshold for erosion of non‐cohesive sediment. This study considered whether vegetation‐generated turbulence had a similar influence on natural cohesive sediment. Cores were collected from a black mangrove forest with aboveground biomass and exposed to stepwise increases in velocity. Erosion was recorded through suspended sediment concentration. For the same velocity, cores with pneumatophores had elevated turbulent kinetic energy compared to bare cores without pneumatophores. However, the vegetation‐generated turbulence did not increase bed stress or the rate of resuspension, relative to bare cores. It was hypothesized that the short time‐scale fluctuations associated with vegetation‐generated turbulence were not of sufficient duration to break cohesion between grains, explaining why elevated levels of turbulence associated with the pneumatophores had no impact on the erosion threshold or rate.
</summary>
<dc:date>2024-07-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Local and General Patterns of Terrestrial Water‐Carbon Coupling</title>
<link href="https://hdl.handle.net/1721.1/165791" rel="alternate"/>
<author>
<name>Short Gianotti, Daniel J</name>
</author>
<author>
<name>Entekhabi, Dara</name>
</author>
<id>https://hdl.handle.net/1721.1/165791</id>
<updated>2026-05-05T03:05:35Z</updated>
<published>2024-06-15T00:00:00Z</published>
<summary type="text">Local and General Patterns of Terrestrial Water‐Carbon Coupling
Short Gianotti, Daniel J; Entekhabi, Dara
Terrestrial carbon uptake and water availability have coupled feedbacks; specifically water uptake for plant growth and soil drying via transpiration. While we might expect this coupling over time at arid sites, climatic water availability also widely covaries geographically with biomass variables that control photosynthetic rates. Using eddy covariance data globally, we find convex, positively-covarying relations between carbon uptake and a turbulent flux metric controlled by land surface moisture (r = 0.73 monthly across sites) at the site level. We estimate a general, empirical relationship based on site-wise water-carbon dynamics. Most sites, and the general relationship, show strong power-law dependence, implicating the role of sub-seasonal land-cover dynamics. We also find that long-term mean carbon/water states follow a similar convex relationship to the site-specific temporal dynamics. We discuss opportunities and caveats for space-for-time frameworks of carbon/water feedback processes globally.
</summary>
<dc:date>2024-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Transition to Double‐Celled Circulations in Mock‐Walker Simulations</title>
<link href="https://hdl.handle.net/1721.1/165790" rel="alternate"/>
<author>
<name>Lutsko, Nicholas J</name>
</author>
<author>
<name>Cronin, Timothy W</name>
</author>
<id>https://hdl.handle.net/1721.1/165790</id>
<updated>2026-05-05T03:04:30Z</updated>
<published>2024-07-18T00:00:00Z</published>
<summary type="text">The Transition to Double‐Celled Circulations in Mock‐Walker Simulations
Lutsko, Nicholas J; Cronin, Timothy W
Mock‐Walker simulations have the potential to play a key role in a tropical model hierarchy, bridging small‐scale Radiative‐Convective Equilibrium simulations and global models of tropical circulations. We demonstrate that mock‐Walker simulations transition from single‐ to double‐celled overturning circulations as mean Sea Surface Temperature (SST) is increased, with the transition occurring near 300 K. The transition is robust to domain geometry and microphysical scheme, and is favored by larger SST gradients. The transition is associated with the development of a mid‐tropospheric minimum in the radiative‐subsidence velocity over the cold pool of the simulations, and is likely reinforced by zonal moisture and temperature fluxes between the warm and cold pools. Several methods of suppressing the transition are investigated, but all set‐ups produce a double‐cell at sufficiently warm mean SSTs. The striking dynamical transition of mock‐Walker simulations dominates their response to warming, though its relevance for observed tropical climate change is unclear.
</summary>
<dc:date>2024-07-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reply to Comment by Poppema and Wüthrich on “Momentum and Energy Predict the Backwater Rise Generated by a Large Wood Jam”</title>
<link href="https://hdl.handle.net/1721.1/165789" rel="alternate"/>
<author>
<name>Follett, Elizabeth</name>
</author>
<author>
<name>Schalko, Isabella</name>
</author>
<author>
<name>Nepf, Heidi</name>
</author>
<id>https://hdl.handle.net/1721.1/165789</id>
<updated>2026-05-05T03:07:18Z</updated>
<published>2024-04-17T00:00:00Z</published>
<summary type="text">Reply to Comment by Poppema and Wüthrich on “Momentum and Energy Predict the Backwater Rise Generated by a Large Wood Jam”
Follett, Elizabeth; Schalko, Isabella; Nepf, Heidi
Follett et al. (2020a, https://doi.org/10.1029/2020gl089346) developed an analytical model to predict backwater rise by log jams, using the size and packing density of logs and the jam length, as well as river slope and bed roughness. We show that the model formulas can be rewritten using the Froude number instead of river slope and roughness, thus improving their applicability in engineering practice. The equation terms and results of Follett et al. (2020a, https://doi.org/10.1029/2020gl089346) are found to be similar to those of the empirically derived formula by Schalko et al. (2018, https://doi.org/10.1061/(asce)hy.1943-7900.0001501). However, some differences are identified, calling for further study. Most notably, these distinctions pertain to the effect of accumulation porosity, with additional minor differences in the exponent of the Froude number. Lastly, model implications for some broader applications are explored, showing a methodology to calculate the representative log size for log mixtures, and the expected effect of log orientation on backwater rise.
This article relates to: Follett, E., Schalko, I., &amp; Nepf, H. (2020). Momentum and energy predict the backwater rise generated by a large wood jam. Geophysical Research Letters, 47, e2020GL089346. https://doi.org/10.1029/2020GL089346
</summary>
<dc:date>2024-04-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Plant Morphology Impacts Bedload Sediment Transport</title>
<link href="https://hdl.handle.net/1721.1/165788" rel="alternate"/>
<author>
<name>Liu, Chao</name>
</author>
<author>
<name>Shan, Yuqi</name>
</author>
<author>
<name>He, Li</name>
</author>
<author>
<name>Li, Fujian</name>
</author>
<author>
<name>Liu, Xingnian</name>
</author>
<author>
<name>Nepf, Heidi</name>
</author>
<id>https://hdl.handle.net/1721.1/165788</id>
<updated>2026-05-05T03:04:37Z</updated>
<published>2024-06-14T00:00:00Z</published>
<summary type="text">Plant Morphology Impacts Bedload Sediment Transport
Liu, Chao; Shan, Yuqi; He, Li; Li, Fujian; Liu, Xingnian; Nepf, Heidi
Bedload sediment transport plays an important role in the evolution of rivers, marshes and deltas. In these aquatic environments, vegetation is widespread, and plant species have unique morphology. However, the impact of real plant morphology on flow and sediment transport has not been quantified. This study used model plants with real plant morphology, based on the aquatic species Phragmites australis, Acorus calamus and Typha latifolia. The frontal area of these species increases away from the bed, which leads to higher near-bed velocity than would be predicted from depth-average frontal area. A plant morphology coefficient was defined to quantify the impact of vertically-varied plant frontal area. Laboratory experiments confirmed that the plant morphology coefficient improved the prediction of near-bed velocity, near-bed turbulent kinetic energy and bedload transport rate in canopies with realistic morphology. Plant morphology can alter transport rates by up to an order of magnitude, relative to the assumption of uniform morphology.
</summary>
<dc:date>2024-06-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Negotiation 101: Theory and Practice</title>
<link href="https://hdl.handle.net/1721.1/165787" rel="alternate"/>
<author>
<name>Rowe, Mary</name>
</author>
<id>https://hdl.handle.net/1721.1/165787</id>
<updated>2026-05-01T03:01:00Z</updated>
<published>2001-01-01T00:00:00Z</published>
<summary type="text">Negotiation 101: Theory and Practice
Rowe, Mary
</summary>
<dc:date>2001-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Bit More About Paul and Priscilla Gray</title>
<link href="https://hdl.handle.net/1721.1/165786" rel="alternate"/>
<author>
<name>Williams, Clarence</name>
</author>
<author>
<name>Rowe, Mary</name>
</author>
<id>https://hdl.handle.net/1721.1/165786</id>
<updated>2026-05-01T03:00:53Z</updated>
<published>2017-11-01T00:00:00Z</published>
<summary type="text">A Bit More About Paul and Priscilla Gray
Williams, Clarence; Rowe, Mary
Two former MIT organizational ombuds describe the contributions the late MIT President Paul Gray made to making MIT more welcoming to people of color and women.
</summary>
<dc:date>2017-11-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Spatially Resolved Temperature Response Functions to CO2 Emissions</title>
<link href="https://hdl.handle.net/1721.1/165785" rel="alternate"/>
<author>
<name>Freese, Lyssa M</name>
</author>
<author>
<name>Giani, Paolo</name>
</author>
<author>
<name>Fiore, Arlene M</name>
</author>
<author>
<name>Selin, Noelle E</name>
</author>
<id>https://hdl.handle.net/1721.1/165785</id>
<updated>2026-05-01T03:04:48Z</updated>
<published>2024-08-07T00:00:00Z</published>
<summary type="text">Spatially Resolved Temperature Response Functions to CO2 Emissions
Freese, Lyssa M; Giani, Paolo; Fiore, Arlene M; Selin, Noelle E
Carbon dioxide (CO2) emissions affect local temperature; quantifying that local response is important for learning about the earth system, the impacts of mitigation, and adaptation needs. We assume the climate system can be represented as a time-dependent linear system, diagnosing Green's Functions for the spatial temperature response to CO2 emissions based on CMIP6 earth system models. This allows us to emulate the linear component of the temperature response to CO2. This approach is sufficient to capture the spatial temperature response of CMIP6 experiments within one standard deviation of the multimodel spread across most regions, though accuracy is lower in the Southern Ocean and the Arctic. Our approach reveals where nonlinear feedbacks are important in current CMIP6 models, and where the local system response is well represented by a time-dependent linear differential operator. It incorporates emissions path dependency and may be useful for evaluating large ensembles of emission scenarios.
Article relates to: Winkler, A. J., &amp; Sierra, C. A. (2025). Towards a new generation of impulse-response functions for integrated Earth system understanding and climate change attribution. Geophysical Research Letters, 52, e2024GL112295. https://doi.org/10.1029/2024GL112295
</summary>
<dc:date>2024-08-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Stratospheric Chlorine Processing After the Unprecedented Hunga Tonga Eruption</title>
<link href="https://hdl.handle.net/1721.1/165784" rel="alternate"/>
<author>
<name>Zhang, Jun</name>
</author>
<author>
<name>Wang, Peidong</name>
</author>
<author>
<name>Kinnison, Douglas</name>
</author>
<author>
<name>Solomon, Susan</name>
</author>
<author>
<name>Guan, Jian</name>
</author>
<author>
<name>Stone, Kane</name>
</author>
<author>
<name>Zhu, Yunqian</name>
</author>
<id>https://hdl.handle.net/1721.1/165784</id>
<updated>2026-05-01T03:04:32Z</updated>
<published>2024-08-30T00:00:00Z</published>
<summary type="text">Stratospheric Chlorine Processing After the Unprecedented Hunga Tonga Eruption
Zhang, Jun; Wang, Peidong; Kinnison, Douglas; Solomon, Susan; Guan, Jian; Stone, Kane; Zhu, Yunqian
Following the Hunga Tonga–Hunga Ha'apai (HTHH) eruption in January 2022, significant reductions in stratospheric hydrochloric acid (HCl) were observed in the Southern Hemisphere mid‐latitudes during the latter half of 2022, suggesting potential chlorine activation. The objective of this study is to comprehensively understand the loss of HCl in the aftermath of HTHH. Satellite measurements and a global chemistry‐climate model are employed for the analysis. We find strong agreement of 2022 anomalies between the modeled and the measured data. The observed tracer‐tracer relations between nitrous oxide (N&lt;jats:sub&gt;2&lt;/jats:sub&gt;O) and HCl indicate a significant role of chemical processing in the observed HCl reduction, especially during the austral winter of 2022. Further examining the roles of chlorine gas‐phase and heterogeneous chemistry, we find that heterogeneous chemistry emerges as the primary driver for the chemical loss of HCl, and the reaction between hypobromous acid (HOBr) and HCl on sulfate aerosols is the dominant loss process.
</summary>
<dc:date>2024-08-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Environment-assisted quantum transport of excitons in perovskite nanocrystal superlattices</title>
<link href="https://hdl.handle.net/1721.1/165783" rel="alternate"/>
<author>
<name>Blach, Daria D</name>
</author>
<author>
<name>Lumsargis-Roth, Victoria A</name>
</author>
<author>
<name>Chuang, Chern</name>
</author>
<author>
<name>Clark, Daniel E</name>
</author>
<author>
<name>Deng, Shibin</name>
</author>
<author>
<name>Williams, Olivia F</name>
</author>
<author>
<name>Li, Christina W</name>
</author>
<author>
<name>Cao, Jianshu</name>
</author>
<author>
<name>Huang, Libai</name>
</author>
<id>https://hdl.handle.net/1721.1/165783</id>
<updated>2026-05-01T03:05:47Z</updated>
<published>2025-02-02T00:00:00Z</published>
<summary type="text">Environment-assisted quantum transport of excitons in perovskite nanocrystal superlattices
Blach, Daria D; Lumsargis-Roth, Victoria A; Chuang, Chern; Clark, Daniel E; Deng, Shibin; Williams, Olivia F; Li, Christina W; Cao, Jianshu; Huang, Libai
Transport of energy carriers in solid-state materials is determined by their wavefunctions and interactions with the environment. While quantum transport theory has predicted distinct transport in the intermediate coupling regime resulting from the intricate interplay between coherent wave-like and incoherent particle-like mechanisms, these predictions are awaiting experimental evidence. Here we demonstrate quantum transport signatures in perovskite nanocrystal superlattices by imaging exciton propagation with high spatial and temporal resolutions over 7-298 K. At 7 K, coherent propagation of the excitons dominates, with transient ballistic motion within a coherence length of up to 40 nanocrystal sites. The interference of the wave-like motion leads to Anderson Localization in the long-time limit. As temperature increases, a peak in the long-time diffusion constant is observed at a temperature where static disorder and dephasing are balanced, which substantiates evidence for environment-assisted quantum transport. Our results connect theoretical predictions and experiments using a stochastic Anderson localization model, highlighting perovskite nanocrystals as promising building blocks for quantum materials.
</summary>
<dc:date>2025-02-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dynamical generation and transfer of nonclassical states in strongly interacting light-matter systems in cavities</title>
<link href="https://hdl.handle.net/1721.1/165782" rel="alternate"/>
<author>
<name>Tutunnikov, Ilia</name>
</author>
<author>
<name>Rokaj, Vasil</name>
</author>
<author>
<name>Cao, Jianshu</name>
</author>
<author>
<name>Sadeghpour, HR</name>
</author>
<id>https://hdl.handle.net/1721.1/165782</id>
<updated>2026-05-01T03:04:38Z</updated>
<published>2025-01-09T00:00:00Z</published>
<summary type="text">Dynamical generation and transfer of nonclassical states in strongly interacting light-matter systems in cavities
Tutunnikov, Ilia; Rokaj, Vasil; Cao, Jianshu; Sadeghpour, HR
We propose leveraging strong and ultrastrong light-matter coupling to efficiently generate and exchange nonclassical light and quantum matter states. Two initial conditions are considered: (a) a displaced quadrature-squeezed matter state, and (b) a coherent state in a cavity. In both scenarios, polaritons mediate the dynamical generation and transfer of nonclassical states between light and matter. By monitoring the dynamics of both subsystems, we uncover the emergence of cavity-induced beatings in the collective matter oscillations. The beating period depends on the particle density through the vacuum Rabi splitting and peaks sharply under light-matter resonance conditions. For initial condition (a), nonclassicality is efficiently transferred from matter to photons under strong and ultrastrong coupling. However, for initial condition (b), nonclassical photonic states are generated only in the ultrastrong coupling regime due to the counter-rotating terms, highlighting the advantages of ultrastrong coupling. Furthermore, in the ultrastrong coupling regime, distinctive asymmetries relative to cavity detuning emerge in dynamical observables of both light and matter. The nonclassical photons can be extracted through a semi-transparent cavity mirror, while nonclassical matter states can be detected via time-resolved spectroscopy. This work highlights that polariton states may serve as a tool for dynamically generating and transferring nonclassical states, with potential applications in quantum technology.
</summary>
<dc:date>2025-01-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>The effect of an optical cavity on diabatic tunneling in an ensemble of symmetric  double-well systems</title>
<link href="https://hdl.handle.net/1721.1/165781" rel="alternate"/>
<author>
<name>Pollak, Eli</name>
</author>
<author>
<name>Cao, Jianshu</name>
</author>
<id>https://hdl.handle.net/1721.1/165781</id>
<updated>2026-05-01T03:04:42Z</updated>
<published>2025-12-17T00:00:00Z</published>
<summary type="text">The effect of an optical cavity on diabatic tunneling in an ensemble of symmetric  double-well systems
Pollak, Eli; Cao, Jianshu
The vacuum field of an optical cavity can potentially modify chemical reactivity and other dynamical properties via vibrational strong coupling (VSC). This intriguing finding has inspired numerous studies, but the underlying mechanisms remain unresolved. While many theoretical efforts focus on solvent or nuclear fluctuations, the tunneling overlap in non-adiabatic processes is usually assumed unperturbed by the cavity field. This paper presents a rigorous calculation of the tunneling splitting and associated ground-state shift resulting from the non-adiabatic coupling between two degenerate, harmonic diabatic surfaces in the ground vibrational state manifold under VSC. Based on this calculation, the tunneling splitting is suppressed by the cavity field for a single-molecule or a few-molecule system, but this cavity-induced effect is neither resonant nor cooperative and vanishes in the thermodynamic limit. This prediction demonstrates the many facets of VSC-induced phenomena and sheds new light on cavity-modified non-adiabatic processes, including charge transfer, Förster resonance energy transfer, energy relaxation, and conical intersection.
</summary>
<dc:date>2025-12-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Insights Into Changing Interglacial Conditions in Subarctic Canada From MIS 11 Through MIS 5e From Seasonally Resolved Speleothem Records</title>
<link href="https://hdl.handle.net/1721.1/165780" rel="alternate"/>
<author>
<name>Batchelor, Cameron J</name>
</author>
<author>
<name>McGee, David</name>
</author>
<author>
<name>Shakun, Jeremy D</name>
</author>
<author>
<name>Woodhead, Jon</name>
</author>
<author>
<name>Jost, Adam B</name>
</author>
<author>
<name>Arnold, Sarah</name>
</author>
<author>
<name>Horne, Greg</name>
</author>
<author>
<name>Kinsley, Christopher W</name>
</author>
<author>
<name>Freudenburg‐Puricelli, Markey</name>
</author>
<id>https://hdl.handle.net/1721.1/165780</id>
<updated>2026-05-01T03:04:44Z</updated>
<published>2024-04-11T00:00:00Z</published>
<summary type="text">Insights Into Changing Interglacial Conditions in Subarctic Canada From MIS 11 Through MIS 5e From Seasonally Resolved Speleothem Records
Batchelor, Cameron J; McGee, David; Shakun, Jeremy D; Woodhead, Jon; Jost, Adam B; Arnold, Sarah; Horne, Greg; Kinsley, Christopher W; Freudenburg‐Puricelli, Markey
High‐resolution records from past interglacial climates help constrain future responses to global&#13;
warming, yet are rare. Here, we produce seasonally resolved climate records from subarctic‐Canada using&#13;
micron‐scale measurements of oxygen isotopes (δ18O) in speleothems with apparent annual growth bands from&#13;
three interglacial periods—Marine Isotope Stages (MIS) 11, 9, and 5e. We find 3‰ lower δ18O values during&#13;
MIS 11 than MIS 5e, despite MIS 11 likely being warmer. We explore controls on high‐latitude speleothem&#13;
δ18O and suggest low MIS 11 δ18O values reflect greater contribution of cold‐season precipitation to dripwater&#13;
from longer annual ground thaw durations. Other potential influences include changes in precipitation source&#13;
and/or increased fraction of cold‐season precipitation from diminished sea ice in MIS 11. Our study highlights&#13;
the potential for high‐latitude speleothems to yield detailed isotopic records of Northern Hemisphere&#13;
interglacial climates beyond the reach of Greenland ice cores and offers a framework for interpreting them.
</summary>
<dc:date>2024-04-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Spatiotemporal Facility‐Level Patterns of Summer Heat Exposure, Vulnerability, and Risk in United States Prison Landscapes</title>
<link href="https://hdl.handle.net/1721.1/165779" rel="alternate"/>
<author>
<name>Ovienmhada, Ufuoma</name>
</author>
<author>
<name>Hines, Mia</name>
</author>
<author>
<name>Krisch, Michael</name>
</author>
<author>
<name>Diongue, Ahmed T</name>
</author>
<author>
<name>Minchew, Brent</name>
</author>
<author>
<name>Wood, Danielle R</name>
</author>
<id>https://hdl.handle.net/1721.1/165779</id>
<updated>2026-05-01T03:06:40Z</updated>
<published>2024-09-24T00:00:00Z</published>
<summary type="text">Spatiotemporal Facility‐Level Patterns of Summer Heat Exposure, Vulnerability, and Risk in United States Prison Landscapes
Ovienmhada, Ufuoma; Hines, Mia; Krisch, Michael; Diongue, Ahmed T; Minchew, Brent; Wood, Danielle R
Heat is associated with increased risk of morbidity and mortality. People who are incarcerated are especially vulnerable to heat exposure due to demographic characteristics and their conditions of confinement. Evaluating heat exposure in prisons, and the characteristics of exposed populations and prisons, can elucidate prison‐level risk to heat exposure. We leveraged a high‐resolution air temperature data set to evaluate short and long‐term patterns of heat metrics for 1,614 prisons in the United States from 1990 to 2023. We found that the most heat‐exposed facilities and states were mostly in the Southwestern United States, while the prisons with the highest temperature anomalies from the historical record were in the Pacific Northwest, the Northeast, Texas, and parts of the Midwest. Prisons in the Pacific Northwest, the Northeast, and upper Midwest had the highest occurrences of days associated with an increased risk of heat‐related mortality. We also estimated differences in heat exposure at prisons by facility and individual‐level characteristics. We found higher proportions of non‐white and Hispanic populations in the prisons with higher heat exposure. Lastly, we found that heat exposure was higher in prisons with any of nine facility‐level characteristics that may modify risk to heat. This study brings together distinct measures of exposure, vulnerability, and risk, which would each inform unique strategies for heat‐interventions. Community leaders and policymakers should carefully consider which measures they want to apply, and include the voices of directly impacted people, as the differing metrics and perspectives will have implications for who is included in fights for environmental justice.
</summary>
<dc:date>2024-09-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Obtaining High‐Resolution Magnetic Records From Speleothems Using Magnetic Microscopy</title>
<link href="https://hdl.handle.net/1721.1/165778" rel="alternate"/>
<author>
<name>Borlina, Cauê S</name>
</author>
<author>
<name>Lima, Eduardo A</name>
</author>
<author>
<name>Feinberg, Joshua M</name>
</author>
<author>
<name>Jaqueto, Plinio</name>
</author>
<author>
<name>Lascu, Ioan</name>
</author>
<author>
<name>Trindade, Ricardo IF</name>
</author>
<author>
<name>Font, Eric</name>
</author>
<author>
<name>Sánchez‐Moreno, Elisa M</name>
</author>
<author>
<name>Dimuccio, Luca Antonio</name>
</author>
<author>
<name>Yokoyama, Yusuke</name>
</author>
<author>
<name>Parés, Josep M</name>
</author>
<author>
<name>Weiss, Benjamin P</name>
</author>
<author>
<name>Dorale, Jeffrey A</name>
</author>
<id>https://hdl.handle.net/1721.1/165778</id>
<updated>2026-05-01T03:07:11Z</updated>
<published>2024-10-05T00:00:00Z</published>
<summary type="text">Obtaining High‐Resolution Magnetic Records From Speleothems Using Magnetic Microscopy
Borlina, Cauê S; Lima, Eduardo A; Feinberg, Joshua M; Jaqueto, Plinio; Lascu, Ioan; Trindade, Ricardo IF; Font, Eric; Sánchez‐Moreno, Elisa M; Dimuccio, Luca Antonio; Yokoyama, Yusuke; Parés, Josep M; Weiss, Benjamin P; Dorale, Jeffrey A
Speleothems are mineral deposits capable of recording detrital and/or chemical remanent magnetization at annual timescales. They can offer high-resolution paleomagnetic records of short-term variations in Earth's magnetic field, crucial for understanding the evolution of the dynamo. Owing to limitations on the magnetic moment sensitivity of commercial cryogenic rock magnetometers (∼10−11 Am2), paleomagnetic studies of speleothems have been limited to samples with volumes of several hundreds of mm3, averaging tens to hundreds of years of magnetic variation. Nonetheless, smaller samples (∼1–10 mm3) can be measured using superconducting quantum interference device (SQUID) microscopy, with a sensitivity better than ∼10−15 Am2. To determine the application of SQUID microscopy for obtaining robust high-resolution records from small-volume speleothem samples, we analyzed three different stalagmites collected from Lapa dos Morcegos Cave (Portugal), Pau d'Alho Cave (Brazil), and Crevice Cave (United States). These stalagmites are representative of a range of magnetic properties and have been previously studied with conventional rock magnetometers. We show that by using SQUID microscopy we can achieve a five-fold improvement in temporal resolution for samples with higher abundances of magnetic carriers (e.g., Pau d'Alho Cave and Lapa dos Morcegos Cave). In contrast, speleothems with low abundances of magnetic carriers (e.g., Crevice Cave) do not benefit from higher resolution analysis and are best analyzed using conventional rock magnetometers. Overall, by targeting speleothem samples with high concentrations of magnetic carriers we can increase the temporal resolution of magnetic records, setting the stage for resolving geomagnetic variations at short time scales.
</summary>
<dc:date>2024-10-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evidence for Magnetically‐Driven Accretion in the Distal Solar System</title>
<link href="https://hdl.handle.net/1721.1/165777" rel="alternate"/>
<author>
<name>Mansbach, Elias N</name>
</author>
<author>
<name>Weiss, Benjamin P</name>
</author>
<author>
<name>Lima, Eduardo A</name>
</author>
<author>
<name>Sowell, Michael</name>
</author>
<author>
<name>Kirschvink, Joseph L</name>
</author>
<author>
<name>Fu, Roger R</name>
</author>
<author>
<name>Cambioni, Saverio</name>
</author>
<author>
<name>Bai, Xue‐Ning</name>
</author>
<author>
<name>Ream, Jodie B</name>
</author>
<author>
<name>Anai, Chisato</name>
</author>
<author>
<name>Kobayashi, Atsuko</name>
</author>
<author>
<name>Hidaka, Hironori</name>
</author>
<id>https://hdl.handle.net/1721.1/165777</id>
<updated>2026-05-01T03:06:13Z</updated>
<published>2024-11-06T00:00:00Z</published>
<summary type="text">Evidence for Magnetically‐Driven Accretion in the Distal Solar System
Mansbach, Elias N; Weiss, Benjamin P; Lima, Eduardo A; Sowell, Michael; Kirschvink, Joseph L; Fu, Roger R; Cambioni, Saverio; Bai, Xue‐Ning; Ream, Jodie B; Anai, Chisato; Kobayashi, Atsuko; Hidaka, Hironori
Paleomagnetic measurements of meteorites indicate that magnetic fields existed in the inner solar nebula capable of driving accretion at rates similar to those observed for young stellar objects with protoplanetary disks. However, the field strength in the solar system beyond ∼7 astronomical units (AU) and its role in accretion remain poorly constrained. Returned samples from asteroid (162173) Ryugu offer the possibility of determining the nebular field intensity in this distal region. Here, we report paleomagnetic studies of three Ryugu particles which reveal that alteration occurred in the presence of a null or relatively weak (&amp;lt;15.8 μT) field within 3 million years (Ma) after solar system formation. This resolves previously contrasting reports that Ryugu's parent body experienced alteration in the presence of a strong (&amp;gt;80 μT) magnetic field and weak or null field (&amp;lt;3 μT). In addition, we re‐examine previous paleomagnetic and Mn‐Cr chronometry studies of three other distally‐sourced meteorites, Tagish Lake, Tarda, and Wisconsin Range 91600, which measured paleointensities of &amp;lt;0.9, &amp;lt;1.7 and 5.1 ± 4.5 μT respectively. While it was previously unclear whether these records were acquired while the nebula was present, our re‐analysis suggests that their records are sufficiently old (i.e., &amp;lt;3.5 Ma after solar system formation) to be nebular in origin. Collectively, these data demonstrate that the distal solar system nebular field, while faint, was likely still strong enough to drive accretion at rates like those observed in the inner solar system.
</summary>
<dc:date>2024-11-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Astrobiological Potential of Rocks Acquired by the Perseverance Rover at a Sedimentary Fan Front in Jezero Crater, Mars</title>
<link href="https://hdl.handle.net/1721.1/165776" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165776</id>
<updated>2026-05-01T03:07:04Z</updated>
<published>2024-08-14T00:00:00Z</published>
<summary type="text">Astrobiological Potential of Rocks Acquired by the Perseverance Rover at a Sedimentary Fan Front in Jezero Crater, Mars
The Perseverance rover has collected seven oriented samples of sedimentary rocks, all likely older than the oldest signs of widespread life on Earth, at the exposed base of the western fan in Jezero crater, Mars. The samples include a sulfate‐ and clay‐bearing mudstone and sandstone, a fluvial sandstone from a stratigraphically low position at the fan front, and a carbonate‐bearing sandstone deposited above the sulfate‐bearing strata. All samples contain aqueously precipitated materials and most or all were aqueously deposited. Although the rover instruments have not confidently detected organic matter in the rocks from the fan front, the much more sensitive terrestrial instruments will still be able to search for remnants of prebiotic chemistries and past life, and study Mars's past habitability in the samples returned to Earth. The hydrated, sulfate‐bearing mudstone has the highest potential to preserve organic matter and biosignatures, whereas the carbonate‐bearing sandstones can be used to constrain when and for how long Jezero crater contained liquid water. Returned sample science analyses of sulfate, carbonate, clay, phosphate and igneous minerals as well as trace metals and volatiles that are present in the samples acquired at the fan front would provide transformative insights into past habitable environments on Mars, the evolution of its magnetic field, atmosphere and climate and the past and present cycling of atmospheric and crustal water, sulfur and carbon.
</summary>
<dc:date>2024-08-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Responses of surface ozone to future agricultural ammonia emissions and subsequent nitrogen deposition through terrestrial ecosystem changes</title>
<link href="https://hdl.handle.net/1721.1/165775" rel="alternate"/>
<author>
<name>Liu, Xueying</name>
</author>
<author>
<name>Tai, Amos PK</name>
</author>
<author>
<name>Fung, Ka Ming</name>
</author>
<id>https://hdl.handle.net/1721.1/165775</id>
<updated>2026-05-01T03:05:03Z</updated>
<published>2021-12-03T00:00:00Z</published>
<summary type="text">Responses of surface ozone to future agricultural ammonia emissions and subsequent nitrogen deposition through terrestrial ecosystem changes
Liu, Xueying; Tai, Amos PK; Fung, Ka Ming
With the rising food demands from the future world population, more intense agricultural activities are expected to cause substantial perturbations to the global nitrogen cycle, aggravating surface air pollution and imposing stress on terrestrial ecosystems. Much less studied, however, is how the terrestrial ecosystem changes induced by agricultural nitrogen deposition may modify biosphere–atmosphere exchange and further exert secondary feedback effects on global air quality. Here we examined the responses of surface ozone air quality to terrestrial ecosystem changes caused by year 2000 to year 2050 changes in agricultural ammonia emissions and the subsequent nitrogen deposition by asynchronously coupling between the land and atmosphere components within the Community Earth System Model framework. We found that global gross primary production is enhanced by 2.1 Pg C yr−1, following a 20 % (20 Tg N yr−1) increase in global nitrogen deposition by the end of the year 2050 in response to rising agricultural ammonia emissions. Leaf area index was simulated to be higher by up to 0.3–0.4 m2 m−2 over most tropical grasslands and croplands and 0.1–0.2 m2 m−2 across boreal and temperate forests at midlatitudes. Around 0.1–0.4 m increases in canopy height were found in boreal and temperate forests, and there were ∼0.1 m increases in tropical grasslands and croplands. We found that these vegetation changes could lead to surface ozone changes by ∼0.5 ppbv (part per billion by volume) when prescribed meteorology was used (i.e., large-scale meteorological responses to terrestrial changes were not allowed), while surface ozone could typically be modified by 2–3 ppbv when meteorology was dynamically simulated in response to vegetation changes. Rising soil NOx emissions, from 7.9 to 8.7 Tg N yr−1, could enhance surface ozone by 2–3 ppbv with both prescribed and dynamic meteorology. We, thus, conclude that, following enhanced nitrogen deposition, the modification of the meteorological environment induced by vegetation changes and soil biogeochemical changes are the more important pathways that can modulate future ozone pollution, representing a novel linkage between agricultural activities and ozone air quality.
</summary>
<dc:date>2021-12-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Global tropospheric halogen (Cl, Br, I) chemistry and its impact on oxidants</title>
<link href="https://hdl.handle.net/1721.1/165774" rel="alternate"/>
<author>
<name>Wang, Xuan</name>
</author>
<author>
<name>Jacob, Daniel J</name>
</author>
<author>
<name>Downs, William</name>
</author>
<author>
<name>Zhai, Shuting</name>
</author>
<author>
<name>Zhu, Lei</name>
</author>
<author>
<name>Shah, Viral</name>
</author>
<author>
<name>Holmes, Christopher D</name>
</author>
<author>
<name>Sherwen, Tomás</name>
</author>
<author>
<name>Alexander, Becky</name>
</author>
<author>
<name>Evans, Mathew J</name>
</author>
<author>
<name>Eastham, Sebastian D</name>
</author>
<author>
<name>Neuman, J Andrew</name>
</author>
<author>
<name>Veres, Patrick R</name>
</author>
<author>
<name>Koenig, Theodore K</name>
</author>
<author>
<name>Volkamer, Rainer</name>
</author>
<author>
<name>Huey, L Gregory</name>
</author>
<author>
<name>Bannan, Thomas J</name>
</author>
<author>
<name>Percival, Carl J</name>
</author>
<author>
<name>Lee, Ben H</name>
</author>
<author>
<name>Thornton, Joel A</name>
</author>
<id>https://hdl.handle.net/1721.1/165774</id>
<updated>2026-05-01T03:05:53Z</updated>
<published>2021-09-21T00:00:00Z</published>
<summary type="text">Global tropospheric halogen (Cl, Br, I) chemistry and its impact on oxidants
Wang, Xuan; Jacob, Daniel J; Downs, William; Zhai, Shuting; Zhu, Lei; Shah, Viral; Holmes, Christopher D; Sherwen, Tomás; Alexander, Becky; Evans, Mathew J; Eastham, Sebastian D; Neuman, J Andrew; Veres, Patrick R; Koenig, Theodore K; Volkamer, Rainer; Huey, L Gregory; Bannan, Thomas J; Percival, Carl J; Lee, Ben H; Thornton, Joel A
We present an updated mechanism for tropospheric halogen (Cl + Br + I) chemistry in the GEOS-Chem global atmospheric chemical transport model and apply it to investigate halogen radical cycling and implications for tropospheric oxidants. Improved representation of HOBr heterogeneous chemistry and its pH dependence in our simulation leads to less efficient recycling and mobilization of bromine radicals and enables the model to include mechanistic sea salt aerosol debromination without generating excessive BrO. The resulting global mean tropospheric BrO mixing ratio is 0.19 ppt (parts per trillion), lower than previous versions of GEOS-Chem. Model BrO shows variable consistency and biases in comparison to surface and aircraft observations in marine air, which are often near or below the detection limit. The model underestimates the daytime measurements of Cl2 and BrCl from the ATom aircraft campaign over the Pacific and Atlantic, which if correct would imply a very large missing primary source of chlorine radicals. Model IO is highest in the marine boundary layer and uniform in the free troposphere, with a global mean tropospheric mixing ratio of 0.08 ppt, and shows consistency with surface and aircraft observations. The modeled global mean tropospheric concentration of Cl atoms is 630 cm−3, contributing 0.8 % of the global oxidation of methane, 14 % of ethane, 8 % of propane, and 7 % of higher alkanes. Halogen chemistry decreases the global tropospheric burden of ozone by 11 %, NOx by 6 %, and OH by 4 %. Most of the ozone decrease is driven by iodine-catalyzed loss. The resulting GEOS-Chem ozone simulation is unbiased in the Southern Hemisphere but too low in the Northern Hemisphere.
</summary>
<dc:date>2021-09-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Nonmonotonic Band Flattening near the Magic Angle of Twisted Bilayer MoTe2</title>
<link href="https://hdl.handle.net/1721.1/165773" rel="alternate"/>
<author>
<name>Deng, Yujun</name>
</author>
<author>
<name>Holtzmann, William</name>
</author>
<author>
<name>Zhu, Ziyan</name>
</author>
<author>
<name>Zaklama, Timothy</name>
</author>
<author>
<name>Majchrzak, Paulina</name>
</author>
<author>
<name>Taniguchi, Takashi</name>
</author>
<author>
<name>Watanabe, Kenji</name>
</author>
<author>
<name>Hashimoto, Makoto</name>
</author>
<author>
<name>Lu, Donghui</name>
</author>
<author>
<name>Jozwiak, Chris</name>
</author>
<author>
<name>Bostwick, Aaron</name>
</author>
<author>
<name>Rotenberg, Eli</name>
</author>
<author>
<name>Fu, Liang</name>
</author>
<author>
<name>Devereaux, Thomas P</name>
</author>
<author>
<name>Xu, Xiaodong</name>
</author>
<author>
<name>Shen, Zhi-Xun</name>
</author>
<id>https://hdl.handle.net/1721.1/165773</id>
<updated>2026-05-01T03:05:16Z</updated>
<published>2025-10-29T00:00:00Z</published>
<summary type="text">Nonmonotonic Band Flattening near the Magic Angle of Twisted Bilayer MoTe2
Deng, Yujun; Holtzmann, William; Zhu, Ziyan; Zaklama, Timothy; Majchrzak, Paulina; Taniguchi, Takashi; Watanabe, Kenji; Hashimoto, Makoto; Lu, Donghui; Jozwiak, Chris; Bostwick, Aaron; Rotenberg, Eli; Fu, Liang; Devereaux, Thomas P; Xu, Xiaodong; Shen, Zhi-Xun
Twisted bilayer MoTe2 (tMoTe2) is an emergent platform for exploring exotic quantum phases driven by the interplay between nontrivial band topology and strong electron correlations. Direct experimental access to its momentum-resolved electronic structure is essential for uncovering the microscopic origins of the correlated topological phases therein. Here, we report angle-resolved photoemission spectroscopy measurements of tMoTe2, revealing pronounced twist-angle-dependent band reconstruction shaped by orbital character, interlayer coupling, and moiré potential modulation. Density functional theory captures the qualitative evolution, yet underestimates key energy scales across twist angles, highlighting the importance of electronic correlations. Notably, the hole effective mass at the &#119870; point exhibits a nonmonotonic dependence on twist angle, peaking near 2°, consistent with band flattening at the magic angle predicted by continuum models. Via electrostatic gating and surface dosing, we further visualize the evolution of electronic structure versus doping, enabling direct observation of the conduction band minimum and confirm tMoTe2 as a direct band gap semiconductor. These results establish a spectroscopic foundation for modeling and engineering emergent quantum phases in this moiré platform.
</summary>
<dc:date>2025-10-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tensor Networks for Noninvertible Symmetries in 3+1⁢D and Beyond</title>
<link href="https://hdl.handle.net/1721.1/165772" rel="alternate"/>
<author>
<name>Gorantla, Pranay</name>
</author>
<author>
<name>Shao, Shu-Heng</name>
</author>
<author>
<name>Tantivasadakarn, Nathanan</name>
</author>
<id>https://hdl.handle.net/1721.1/165772</id>
<updated>2026-05-01T03:05:00Z</updated>
<published>2025-10-08T00:00:00Z</published>
<summary type="text">Tensor Networks for Noninvertible Symmetries in 3+1⁢D and Beyond
Gorantla, Pranay; Shao, Shu-Heng; Tantivasadakarn, Nathanan
Tensor networks provide a natural language for noninvertible symmetries in general Hamiltonian lattice models. We use ZX-diagrams, which are tensor network presentations of quantum circuits, to define a noninvertible operator implementing the Wegner duality in 3+1⁢D lattice ℤ2 gauge theory. The noninvertible algebra, which mixes with lattice translations, can be efficiently computed using ZX-calculus. We further deform the ℤ2 gauge theory while preserving the duality and find a model with nine exactly degenerate ground states on a torus, consistent with the Lieb-Schultz-Mattis-type constraint imposed by the symmetry. Finally, we provide a ZX-diagram presentation of the noninvertible duality operators (including noninvertible parity and reflection symmetries) of generalized Ising models based on graphs, encompassing the 1+1⁢D Ising model, the three-spin Ising model, the Ashkin-Teller model, and the 2+1⁢D plaquette Ising model. The mixing (or lack thereof) with spatial symmetries is understood from a unifying perspective based on graph theory.
</summary>
<dc:date>2025-10-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Generalized Statistics on Lattices</title>
<link href="https://hdl.handle.net/1721.1/165771" rel="alternate"/>
<author>
<name>Kobayashi, Ryohei</name>
</author>
<author>
<name>Li, Yuyang</name>
</author>
<author>
<name>Xue, Hanyu</name>
</author>
<author>
<name>Hsin, Po-Shen</name>
</author>
<author>
<name>Chen, Yu-An</name>
</author>
<id>https://hdl.handle.net/1721.1/165771</id>
<updated>2026-05-01T03:07:40Z</updated>
<published>2026-01-14T00:00:00Z</published>
<summary type="text">Generalized Statistics on Lattices
Kobayashi, Ryohei; Li, Yuyang; Xue, Hanyu; Hsin, Po-Shen; Chen, Yu-An
The statistics of particles and extended excitations, such as loops and membranes, are fundamental to modern condensed matter physics, high-energy physics, and quantum information science, yet a comprehensive lattice-level framework for computing them remains elusive. In this work, we develop a universal microscopic method to determine the generalized statistics of Abelian excitations on lattices of arbitrary dimension and demonstrate it by deriving the statistics of particles, loops, and membranes in up to three spatial dimensions. Our approach constructs a sequence of local unitary operators whose many-body Berry phase encodes the desired statistical invariant. The required sequence is generated automatically from the Smith normal form of locality constraints and therefore needs no extra physical input. We prove that the resulting invariants are quantized, provide an algorithm that computes them efficiently, and show how they unify familiar braiding and fusion data of particles while also uncovering new self- and mutual statistics of loop and membrane excitations. We further demonstrate that each statistical invariant corresponds to an ’t Hooft anomaly of a generalized symmetry; we show that a nontrivial invariant both (i) obstructs gauging that symmetry and (ii) forbids any short-range-entangled (symmetry-preserving) ground state. This establishes a precise connection between microscopic lattice anomalies and many-body dynamics, providing a generalization of the Lieb-Schultz-Mattis theorem that constrains a wide class of quantum lattice systems.
</summary>
<dc:date>2026-01-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Symmetry-based efficient simulation of higher-order coherences in quantum many-body superradiance</title>
<link href="https://hdl.handle.net/1721.1/165770" rel="alternate"/>
<author>
<name>Holzinger, Raphael</name>
</author>
<author>
<name>Rubies-Bigorda, Oriol</name>
</author>
<author>
<name>Yelin, Susanne F.</name>
</author>
<author>
<name>Ritsch, Helmut</name>
</author>
<id>https://hdl.handle.net/1721.1/165770</id>
<updated>2026-05-01T03:06:22Z</updated>
<published>2025-08-29T00:00:00Z</published>
<summary type="text">Symmetry-based efficient simulation of higher-order coherences in quantum many-body superradiance
Holzinger, Raphael; Rubies-Bigorda, Oriol; Yelin, Susanne F.; Ritsch, Helmut
We propose an efficient method to numerically simulate the superradiant emission dynamics of large numbers of quantum emitters in ordered arrays in the presence of long-range dipole-dipole interactions mediated by the vacuum electromagnetic field. Using the spatial symmetries of the system, we rewrite the equations of motion in a collective spin basis and subsequently apply a higher-order cumulant expansion for the collective operators. By truncating the subradiant collective modes with a heavily suppressed decay rate and keeping only the effect from the radiating collective modes, we reduce the numerical complexity significantly. This allows to efficiently compute the dissipative dynamics of the observables of interest for linear and ring-shaped arrays of quantum emitters. In particular, we characterize the second-order intensity correlation function &#119892;(2)⁡(&#120591;=0), which is challenging to compute for extended systems with traditional cumulant expansion methods.
</summary>
<dc:date>2025-08-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Toward structure-preserving quantum encodings</title>
<link href="https://hdl.handle.net/1721.1/165769" rel="alternate"/>
<author>
<name>Parzygnat, Arthur J.</name>
</author>
<author>
<name>Bradley, Tai-Danae</name>
</author>
<author>
<name>Vlasic, Andrew</name>
</author>
<author>
<name>Pham, Anh</name>
</author>
<id>https://hdl.handle.net/1721.1/165769</id>
<updated>2026-05-01T03:06:48Z</updated>
<published>2025-12-08T00:00:00Z</published>
<summary type="text">Toward structure-preserving quantum encodings
Parzygnat, Arthur J.; Bradley, Tai-Danae; Vlasic, Andrew; Pham, Anh
Harnessing the potential computational advantage of quantum computers for machine learning tasks relies on the uploading of classical data onto quantum computers through what are commonly referred to as quantum encodings. The choice of such encodings may vary substantially from one task to another, and there exist only a few cases where structure has provided insight into their design and implementation, such as symmetry in geometric quantum learning. Here, we propose the perspective that category theory offers a natural mathematical framework for analyzing encodings that respect structure inherent in datasets and learning tasks. We illustrate this with pedagogical examples, which include geometric quantum machine learning, quantum metric learning, topological data analysis, and more. Moreover, such a perspective provides a language in which to ask meaningful and mathematically precise questions for the design of quantum encodings and circuits for quantum machine learning tasks.
</summary>
<dc:date>2025-12-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Perception of risk : disaster scenarios at Brookhaven</title>
<link href="https://hdl.handle.net/1721.1/165768" rel="alternate"/>
<author>
<name>Shah, Sameer J.
            (Sameer Jay),
            1981-</name>
</author>
<id>https://hdl.handle.net/1721.1/165768</id>
<updated>2026-04-30T03:06:47Z</updated>
<published>2003-01-01T00:00:00Z</published>
<summary type="text">Perception of risk : disaster scenarios at Brookhaven
Shah, Sameer J.
            (Sameer Jay),
            1981-
Thesis: S.B., Massachusetts Institute of Technology, Program in Science, Technology, and Society, 2003; Includes bibliographical references.
</summary>
<dc:date>2003-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A study of a direct current electrification of the Boston to Providence division of the N.Y., N.H. &amp; H.R.R.</title>
<link href="https://hdl.handle.net/1721.1/165767" rel="alternate"/>
<author>
<name>Ramsbottom, J. Raymond.</name>
</author>
<author>
<name>Tierney, Harold J.</name>
</author>
<id>https://hdl.handle.net/1721.1/165767</id>
<updated>2026-04-30T03:06:43Z</updated>
<published>1917-01-01T00:00:00Z</published>
<summary type="text">A study of a direct current electrification of the Boston to Providence division of the N.Y., N.H. &amp; H.R.R.
Ramsbottom, J. Raymond.; Tierney, Harold J.
Thesis: B.S., Massachusetts Institute of Technology, Department of Electrical Engineering, 1917
</summary>
<dc:date>1917-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A relocation of a portion of the Mattapan-Brockton line of the Bay State Street Railway in relation to a study of the suburban transportation facilities of Boston</title>
<link href="https://hdl.handle.net/1721.1/165766" rel="alternate"/>
<author>
<name>Miller, Henry L.</name>
</author>
<id>https://hdl.handle.net/1721.1/165766</id>
<updated>2026-04-30T03:06:38Z</updated>
<published>1917-01-01T00:00:00Z</published>
<summary type="text">A relocation of a portion of the Mattapan-Brockton line of the Bay State Street Railway in relation to a study of the suburban transportation facilities of Boston
Miller, Henry L.
Thesis: B.S., Massachusetts Institute of Technology, Department of Electrical Engineering, 1917
</summary>
<dc:date>1917-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Variational principles in irreversible thermodynamics</title>
<link href="https://hdl.handle.net/1721.1/165765" rel="alternate"/>
<author>
<name>Manning, Irwin.</name>
</author>
<id>https://hdl.handle.net/1721.1/165765</id>
<updated>2026-04-30T03:02:45Z</updated>
<published>1955-01-01T00:00:00Z</published>
<summary type="text">Variational principles in irreversible thermodynamics
Manning, Irwin.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Physics, 1955; Vita.; Bibliography: leaves 93-95.
</summary>
<dc:date>1955-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Framework and models for the provision of real-time driver information</title>
<link href="https://hdl.handle.net/1721.1/165764" rel="alternate"/>
<author>
<name>Kaysi, Isam Adnan.</name>
</author>
<id>https://hdl.handle.net/1721.1/165764</id>
<updated>2026-04-30T03:03:21Z</updated>
<published>1992-01-01T00:00:00Z</published>
<summary type="text">Framework and models for the provision of real-time driver information
Kaysi, Isam Adnan.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Civil Engineering, 1992; Includes bibliographical references (leaves 205-212).
</summary>
<dc:date>1992-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Toroidal plasma confinement configurations with noncircular cross sections.</title>
<link href="https://hdl.handle.net/1721.1/165763" rel="alternate"/>
<author>
<name>Dagazian, Rostom Yeya Serkos.</name>
</author>
<id>https://hdl.handle.net/1721.1/165763</id>
<updated>2026-04-30T03:02:04Z</updated>
<published>1972-01-01T00:00:00Z</published>
<summary type="text">Toroidal plasma confinement configurations with noncircular cross sections.
Dagazian, Rostom Yeya Serkos.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Nuclear Engineering, 1972; 4 unnumbered blank leaves inserted. Vita.; Includes bibliographical references.
</summary>
<dc:date>1972-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>An examination of esterification of sebacic acid and iso-octyl alcohol</title>
<link href="https://hdl.handle.net/1721.1/165762" rel="alternate"/>
<author>
<name>Bhadani, Surendra Kumar.</name>
</author>
<id>https://hdl.handle.net/1721.1/165762</id>
<updated>2026-04-30T03:06:33Z</updated>
<published>1955-01-01T00:00:00Z</published>
<summary type="text">An examination of esterification of sebacic acid and iso-octyl alcohol
Bhadani, Surendra Kumar.
Thesis: B.S., Massachusetts Institute of Technology, Department of Chemical Engineering, 1955; Bibliography: leaf 43.
</summary>
<dc:date>1955-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analogic part programming with interactive graphics</title>
<link href="https://hdl.handle.net/1721.1/165761" rel="alternate"/>
<author>
<name>Gossard, David Clair.</name>
</author>
<id>https://hdl.handle.net/1721.1/165761</id>
<updated>2026-04-30T03:03:03Z</updated>
<published>1975-01-01T00:00:00Z</published>
<summary type="text">Analogic part programming with interactive graphics
Gossard, David Clair.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1975; Vita.; Includes bibliographical references.
</summary>
<dc:date>1975-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A study of the organic compounds in the lunar crust and in terrestrial model systems.</title>
<link href="https://hdl.handle.net/1721.1/165760" rel="alternate"/>
<author>
<name>Preti, George.</name>
</author>
<id>https://hdl.handle.net/1721.1/165760</id>
<updated>2026-04-30T03:02:21Z</updated>
<published>1971-01-01T00:00:00Z</published>
<summary type="text">A study of the organic compounds in the lunar crust and in terrestrial model systems.
Preti, George.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Chemistry, 1971; Vita.; Includes bibliographical references.
</summary>
<dc:date>1971-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sequential decisionmaking and the theory of the firm.</title>
<link href="https://hdl.handle.net/1721.1/165759" rel="alternate"/>
<author>
<name>Kohn, Meir G.</name>
</author>
<id>https://hdl.handle.net/1721.1/165759</id>
<updated>2026-04-30T03:02:31Z</updated>
<published>1973-01-01T00:00:00Z</published>
<summary type="text">Sequential decisionmaking and the theory of the firm.
Kohn, Meir G.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Economics, 1973; Vita.; Bibliography: leaves 149-155.
</summary>
<dc:date>1973-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>High frequency vacuum pressure fluctuations</title>
<link href="https://hdl.handle.net/1721.1/165758" rel="alternate"/>
<author>
<name>Tucker, Gregory Sheridan.</name>
</author>
<id>https://hdl.handle.net/1721.1/165758</id>
<updated>2026-04-30T03:06:30Z</updated>
<published>1985-01-01T00:00:00Z</published>
<summary type="text">High frequency vacuum pressure fluctuations
Tucker, Gregory Sheridan.
Thesis: B.S., Massachusetts Institute of Technology, Department of Physics, 1985; Bibliography: leaf 40.
</summary>
<dc:date>1985-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>An investigation of water hammer in the drive pipe of a rife hydraulic ram</title>
<link href="https://hdl.handle.net/1721.1/165757" rel="alternate"/>
<author>
<name>Rollins, Harry T.</name>
</author>
<id>https://hdl.handle.net/1721.1/165757</id>
<updated>2026-04-30T03:05:58Z</updated>
<published>1904-01-01T00:00:00Z</published>
<summary type="text">An investigation of water hammer in the drive pipe of a rife hydraulic ram
Rollins, Harry T.
Thesis: B.S., Massachusetts Institute of Technology, Department of Architecture, 1904
</summary>
<dc:date>1904-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Impact of Lateral Gap on Flow Distribution, Backwater Rise, and Turbulence Generated by a Logjam</title>
<link href="https://hdl.handle.net/1721.1/165756" rel="alternate"/>
<author>
<name>Schalko, Isabella</name>
</author>
<author>
<name>Follett, Elizabeth</name>
</author>
<author>
<name>Nepf, Heidi</name>
</author>
<id>https://hdl.handle.net/1721.1/165756</id>
<updated>2026-04-30T03:10:17Z</updated>
<published>2023-10-19T00:00:00Z</published>
<summary type="text">Impact of Lateral Gap on Flow Distribution, Backwater Rise, and Turbulence Generated by a Logjam
Schalko, Isabella; Follett, Elizabeth; Nepf, Heidi
Logjams may form at natural obstructions and are also used as nature‐based solutions for river restoration and natural flood management. Previous research has described backwater rise due to logjams that span the full channel cross‐section and logjams with a gap between the lower edge of the logjam and the bed. Logjams that fill the channel depth, but not its width, leaving a lateral gap between the logjam and the channel bank, are also common natural formations and the focus of this study. The flow distribution between the logjam and the lateral gap, backwater rise, and wake turbulence are key factors in determining the ecologic and flood risk impact of a logjam. Specifically, relative to a channel‐spanning logjam, the introduction of a lateral gap can reduce backwater rise and increase the potential for trapping particles, such as nutrients or microplastics, within the wake region, but may also promote erosion in the gap. The choice of logjam and gap widths can be used to maximize flow and habitat diversity in rivers, while reducing erosion risk. We present experimental results demonstrating that the flow distribution between the logjam and the lateral gap can be predicted by assuming equal resistance through the logjam and gap sections. Further, we show that backwater rise can be determined from the predicted discharge through the logjam using a momentum balance developed for channel‐spanning logjams. Finally, turbulence generated within the jam was observed directly downstream of the logjam, and, for the densities considered, increased with jam density.
</summary>
<dc:date>2023-10-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Influences of Space Weather Forecasting Uncertainty on Satellite Conjunction Assessment</title>
<link href="https://hdl.handle.net/1721.1/165755" rel="alternate"/>
<author>
<name>Parker, William E</name>
</author>
<author>
<name>Freeman, Mervyn</name>
</author>
<author>
<name>Chisham, Gareth</name>
</author>
<author>
<name>Kavanagh, Andrew</name>
</author>
<author>
<name>Mun Siew, Peng</name>
</author>
<author>
<name>Rodriguez‐Fernandez, Victor</name>
</author>
<author>
<name>Linares, Richard</name>
</author>
<id>https://hdl.handle.net/1721.1/165755</id>
<updated>2026-04-30T03:07:42Z</updated>
<published>2024-07-22T00:00:00Z</published>
<summary type="text">Influences of Space Weather Forecasting Uncertainty on Satellite Conjunction Assessment
Parker, William E; Freeman, Mervyn; Chisham, Gareth; Kavanagh, Andrew; Mun Siew, Peng; Rodriguez‐Fernandez, Victor; Linares, Richard
A significant increase in the number of anthropogenic objects in Earth orbit has necessitated the&#13;
development ofsatellite conjunction assessment and collision avoidance capabilitiesfor new spacecraft. Neutral&#13;
mass density variability in the thermosphere, driven by enhanced geomagnetic activity and solar EUV&#13;
absorption, is a major source of satellite propagation error. This work investigates the impacts of space weather&#13;
driver forecasting uncertainty on satellite drag and collision avoidance maneuver decision‐making. Since most&#13;
operational space weather driver forecasts do not offer an uncertainty assessment, the satellite operator&#13;
community is left to make dangerous assumptions about the trustworthiness of the forecast models they use to&#13;
perform satellite state propagation. Climatological persistence‐based forecast models are developed for F10.7&#13;
and Kp. These models accurately capture the heteroscedastic and, at times, highly non‐Gaussian uncertainty&#13;
distribution on forecasts of the drivers of interest. A set of realistic satellite conjunction scenarios is simulated to&#13;
demonstrate the contributions of space weather driver forecast uncertainty on the probability of collision and&#13;
maneuver decisions. Improved driver forecasts, especially forecasts of F10.7, are demonstrated to be very useful&#13;
for enabling durable maneuver decisions with additional lead time (up to 24 hr for the period examined), though&#13;
the improvement depends on the specific conjunction scenario of interest.
</summary>
<dc:date>2024-07-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Constraining Plio‐Pleistocene Shifts in Northwest African Hydroclimate, Ecosystem Distributions, and Marine Productivity: New Paleo‐Records Across the Mid‐Pleistocene Transition</title>
<link href="https://hdl.handle.net/1721.1/165754" rel="alternate"/>
<author>
<name>O’Mara, Nicholas A</name>
</author>
<author>
<name>Skonieczny, Charlotte</name>
</author>
<author>
<name>McGee, David</name>
</author>
<author>
<name>Winckler, Gisela</name>
</author>
<author>
<name>Bory, Aloys J‐M</name>
</author>
<author>
<name>Bradtmiller, Louisa I</name>
</author>
<author>
<name>Malaizé, Bruno</name>
</author>
<author>
<name>Polissar, Pratigya J</name>
</author>
<id>https://hdl.handle.net/1721.1/165754</id>
<updated>2026-04-30T03:08:35Z</updated>
<published>2024-06-22T00:00:00Z</published>
<summary type="text">Constraining Plio‐Pleistocene Shifts in Northwest African Hydroclimate, Ecosystem Distributions, and Marine Productivity: New Paleo‐Records Across the Mid‐Pleistocene Transition
O’Mara, Nicholas A; Skonieczny, Charlotte; McGee, David; Winckler, Gisela; Bory, Aloys J‐M; Bradtmiller, Louisa I; Malaizé, Bruno; Polissar, Pratigya J
Northwest Africa transitioned from a wet/vegetated landscape toward drier/sparser conditions sometime between the late‐Pliocene and the late‐Pleistocene. However, our understanding of the precise timing and nature of this transition is hampered by a paucity of paleo‐records which bridge these two intervals. Here we report new plant‐wax isotope as well as dust and opal flux records from the relatively brief interval ∼1.1–1.0 million years ago (Ma) to evaluate the astronomical timescale controls of Northwest African hydroclimate and vegetation during the Mid‐Pleistocene Transition (MPT) and, in context with published records, the drivers of long‐term climate and ecological trends over the Plio‐Pleistocene. The tempo and amplitude of the Northwest African monsoon rainfall swings closely track low latitude insolation forcings over the last 5 Ma. However, we demonstrate that a pronounced mean state decline in monsoon strength likely occurred following the MPT most likely instigated by increasing Atlantic meridional sea surface temperature gradients or declines in the strength of the meridional overturning circulation. The northward extent of vegetation does not track changes in monsoon strength over the Plio‐Pleistocene and thus may be more strongly influenced by changes in monsoon rainfall extent or ecosystem disturbances. Progressively diminished dust fluxes following a decline in monsoon strength after 1.0 Ma is consistent with reduced production and subsequent depletion of fine‐grained sediments in the Sahara. Synchroneity between dust and opal fluxes across timescales suggests nutrient delivery to the surface ocean via dust plays a key role in marine primary productivity off the coast of Northwest Africa.
</summary>
<dc:date>2024-06-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Zonal Indian Ocean Variability Drives Millennial‐Scale Precipitation Changes in Northern Madagascar</title>
<link href="https://hdl.handle.net/1721.1/165753" rel="alternate"/>
<author>
<name>Tiger, Benjamin H</name>
</author>
<author>
<name>Burns, Stephen</name>
</author>
<author>
<name>Dawson, Robin R</name>
</author>
<author>
<name>Scroxton, Nick</name>
</author>
<author>
<name>Godfrey, Laurie R</name>
</author>
<author>
<name>Ranivoharimanana, Lovasoa</name>
</author>
<author>
<name>Faina, Peterson</name>
</author>
<author>
<name>McGee, David</name>
</author>
<id>https://hdl.handle.net/1721.1/165753</id>
<updated>2026-04-30T03:10:15Z</updated>
<published>2023-11-07T00:00:00Z</published>
<summary type="text">Zonal Indian Ocean Variability Drives Millennial‐Scale Precipitation Changes in Northern Madagascar
Tiger, Benjamin H; Burns, Stephen; Dawson, Robin R; Scroxton, Nick; Godfrey, Laurie R; Ranivoharimanana, Lovasoa; Faina, Peterson; McGee, David
The low latitude Indian Ocean is warming faster than other tropical basins, and its interannual climate variability is projected to become more extreme under future emissions scenarios with substantial impacts on developing Indian Ocean rim countries. Therefore, it has become increasingly important to understand the drivers of regional precipitation in a changing climate. Here we present a new speleothem record from Anjohibe, a cave in northwest (NW) Madagascar well situated to record past changes in the Intertropical Convergence Zone (ITCZ). U‐Th ages date speleothem growth from 27 to 14 ka. δ&lt;jats:sup&gt;18&lt;/jats:sup&gt;O, δ&lt;jats:sup&gt;13&lt;/jats:sup&gt;C, and trace metal proxies reconstruct drier conditions during Heinrich Stadials 1 and 2, and wetter conditions during the Last Glacial Maximum and Bølling–Allerød. This is surprising considering hypotheses arguing for southward (northward) ITCZ shifts during North Atlantic cooling (warming) events, which would be expected to result in wetter (drier) conditions at Anjohibe in the Southern Hemisphere tropics. The reconstructed Indian Ocean zonal (west‐east) sea surface temperature (SST) gradient is in close agreement with hydroclimate proxies in NW Madagascar, with periods of increased precipitation correlating with relatively warmer conditions in the western Indian Ocean and cooler conditions in the eastern Indian Ocean. Such gradients could drive long‐term shifts in the strength of the Walker circulation with widespread effects on hydroclimate across East Africa. These results suggest that during abrupt millennial‐scale climate changes, it is not meridional ITCZ shifts, but the tropical Indian Ocean SST gradient and Walker circulation driving East African hydroclimate variability.
</summary>
<dc:date>2023-11-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Machine Learning Bias Correction on Large‐Scale Environment of High‐Impact Weather Systems in E3SM Atmosphere Model</title>
<link href="https://hdl.handle.net/1721.1/165752" rel="alternate"/>
<author>
<name>Zhang, Shixuan</name>
</author>
<author>
<name>Harrop, Bryce</name>
</author>
<author>
<name>Leung, L Ruby</name>
</author>
<author>
<name>Charalampopoulos, Alexis‐Tzianni</name>
</author>
<author>
<name>Barthel Sorensen, Benedikt</name>
</author>
<author>
<name>Xu, Wenwei</name>
</author>
<author>
<name>Sapsis, Themistoklis</name>
</author>
<id>https://hdl.handle.net/1721.1/165752</id>
<updated>2026-04-30T03:10:09Z</updated>
<published>2024-08-08T00:00:00Z</published>
<summary type="text">A Machine Learning Bias Correction on Large‐Scale Environment of High‐Impact Weather Systems in E3SM Atmosphere Model
Zhang, Shixuan; Harrop, Bryce; Leung, L Ruby; Charalampopoulos, Alexis‐Tzianni; Barthel Sorensen, Benedikt; Xu, Wenwei; Sapsis, Themistoklis
Large‐scale dynamical and thermodynamical processes are common environmental drivers of high‐impact weather systems causing extreme weather events. However, such large‐scale environmental conditions often display systematic biases in climate simulations, posing challenges to evaluating high‐impact weather systems and extreme weather events. In this paper, a machine learning (ML) approach was employed to bias correct the large‐scale wind, temperature, and humidity simulated by the atmospheric component of the Energy Exascale Earth System Model (E3SM) at ∼1° resolution. The usefulness of the ML approach for extreme weather analysis was demonstrated with a focus on three high‐impact weather systems, including tropical cyclones (TCs), extratropical cyclones (ETCs), and atmospheric rivers (ARs). We show that the ML model can effectively reduce climate bias in large‐scale wind, temperature, and humidity while preserving their responses to imposed climate change perturbations. The bias correction is found to directly improve water vapor transport associated with ARs, and representations of thermodynamical flows associated with ETCs. When the bias‐corrected large‐scale winds are used to drive a synthetic TC track forecast model over the Atlantic basin, the resulting TC track density agrees better with that of the TC track model driven by observed winds. In addition, the ML model insignificantly interferes with the mean climate change signals of large‐scale storm environments as well as the occurrence and intensity of three weather systems. This study suggests that the proposed ML approach can be used to improve the downscaling of extreme weather events by providing more realistic large‐scale storm environments simulated by low‐resolution climate models.
</summary>
<dc:date>2024-08-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>A New WENO‐Based Momentum Advection Scheme for Simulations of Ocean Mesoscale Turbulence</title>
<link href="https://hdl.handle.net/1721.1/165751" rel="alternate"/>
<author>
<name>Silvestri, Simone</name>
</author>
<author>
<name>Wagner, Gregory L</name>
</author>
<author>
<name>Campin, Jean‐Michel</name>
</author>
<author>
<name>Constantinou, Navid C</name>
</author>
<author>
<name>Hill, Christopher N</name>
</author>
<author>
<name>Souza, Andre</name>
</author>
<author>
<name>Ferrari, Raffaele</name>
</author>
<id>https://hdl.handle.net/1721.1/165751</id>
<updated>2026-04-30T03:09:49Z</updated>
<published>2024-07-15T00:00:00Z</published>
<summary type="text">A New WENO‐Based Momentum Advection Scheme for Simulations of Ocean Mesoscale Turbulence
Silvestri, Simone; Wagner, Gregory L; Campin, Jean‐Michel; Constantinou, Navid C; Hill, Christopher N; Souza, Andre; Ferrari, Raffaele
Current eddy‐permitting and eddy‐resolving ocean models require dissipation to prevent a spurious accumulation of enstrophy at the grid scale. We introduce a new numerical scheme for momentum advection in large‐scale ocean models that involves upwinding through a weighted essentially non‐oscillatory (WENO) reconstruction. The new scheme provides implicit dissipation and thereby avoids the need for an additional explicit dissipation that may require calibration of unknown parameters. This approach uses the rotational, “vector invariant” formulation of the momentum advection operator that is widely employed by global general circulation models. A novel formulation of the WENO “smoothness indicators” is key for avoiding excessive numerical dissipation of kinetic energy and enstrophy at grid‐resolved scales. We test the new advection scheme against a standard approach that combines explicit dissipation with a dispersive discretization of the rotational advection operator in two scenarios: (a) two‐dimensional turbulence and (b) three‐dimensional baroclinic equilibration. In both cases, the solutions are stable, free from dispersive artifacts, and achieve increased “effective” resolution compared to other approaches commonly used in ocean models.
</summary>
<dc:date>2024-07-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>How Well do We Understand the Planck Feedback?</title>
<link href="https://hdl.handle.net/1721.1/165750" rel="alternate"/>
<author>
<name>Cronin, Timothy W</name>
</author>
<author>
<name>Dutta, Ishir</name>
</author>
<id>https://hdl.handle.net/1721.1/165750</id>
<updated>2026-04-30T03:09:17Z</updated>
<published>2023-07-17T00:00:00Z</published>
<summary type="text">How Well do We Understand the Planck Feedback?
Cronin, Timothy W; Dutta, Ishir
A reference or “no-feedback” radiative response to warming is fundamental to understanding&#13;
how much global warming will occur for a given change in greenhouse gases or solar radiation incident&#13;
on the Earth. The simplest estimate of this radiative response is given by the Stefan-Boltzmann law as&#13;
&#119860;&#119860; −4&#120590;&#120590;&#119879;&#119879;&#119890;&#119890;&#13;
3&#13;
≈ −3.8 W m−2 K−1 for Earth's present climate, where &#119860;&#119860; &#119879;&#119879;&#119890;&#119890; is a global effective emission temperature.&#13;
The comparable radiative response in climate models, widely called the “Planck feedback,” averages&#13;
−3.3 W m−2 K−1. This difference of 0.5 W m−2 K−1 is large compared to the uncertainty in the net climate&#13;
feedback, yet it has not been studied carefully. We use radiative transfer models to analyze these two radiative&#13;
feedbacks to warming, and find that the difference arises primarily from the lack of stratospheric warming&#13;
assumed in calculations of the Planck feedback (traditionally justified by differing constraints on and time&#13;
scales of stratospheric adjustment relative to surface and tropospheric warming). The Planck feedback is&#13;
thus masked for wavelengths with non-negligible stratospheric opacity, and this effect implicitly acts to&#13;
amplify warming in current feedback analysis of climate change. Other differences between Planck and&#13;
Stefan-Boltzmann feedbacks arise from temperature-dependent gas opacities, and several artifacts of nonlinear&#13;
averaging across wavelengths, heights, and different locations; these effects partly cancel but as a whole slightly&#13;
destabilize the Planck feedback. Our results point to an important role played by stratospheric opacity in Earth's&#13;
climate sensitivity, and clarify a long-overlooked but notable gap in our understanding of Earth's reference&#13;
radiative response to warming.
</summary>
<dc:date>2023-07-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multiple Equilibria and Soil Moisture‐Precipitation Feedbacks in Idealized Convection‐Permitting Simulations With an Open Hydrological Cycle</title>
<link href="https://hdl.handle.net/1721.1/165749" rel="alternate"/>
<author>
<name>Abbott, Tristan H</name>
</author>
<author>
<name>Cronin, Timothy W</name>
</author>
<id>https://hdl.handle.net/1721.1/165749</id>
<updated>2026-04-30T03:09:02Z</updated>
<published>2023-08-18T00:00:00Z</published>
<summary type="text">Multiple Equilibria and Soil Moisture‐Precipitation Feedbacks in Idealized Convection‐Permitting Simulations With an Open Hydrological Cycle
Abbott, Tristan H; Cronin, Timothy W
Soil moisture‐precipitation feedbacks are influenced by both small‐scale land‐atmosphere coupling and large‐scale atmospheric circulations, and their sign has important implications for the stability of regional hydroclimate. However, the importance of both local and non‐local processes makes it difficult to model soil moisture‐precipitation feedbacks with high fidelity, limiting our ability to use models to understand controls on their sign. Here, we address this challenge by exploring a promising but seldom‐used approach to studying soil moisture‐precipitation feedbacks over tropical land: coupling small‐domain convection‐permitting simulations to a land‐like surface and a parameterization of large‐scale dynamics. The large‐scale dynamics parameterization, based on the weak temperature gradient (WTG) approximation, is a key component that produces an open hydrological cycle with interactive moisture convergence. We first show that WTG‐constrained simulations coupled to a freely‐evaporating land surface support both precipitating and non‐precipitating equilibria across a wide range of insolation. We then leverage this bistability to probe the influence of soil moisture feedbacks on dry spells by asking whether non‐precipitating equilibria remain stable as the underlying surface dries out. We find that surface drying can trigger transitions from dry equilibria back to precipitating equilibria—a negative soil moisture‐precipitation feedback—and attribute this transition to increasingly inefficient boundary layer ventilation by the parameterized large‐scale circulation. In sensitivity experiments, alternative versions of the WTG scheme modify the parameter space where the negative feedback occurs, but none eliminate it entirely. Our results provide a foundation for leveraging the rich behavior of WTG‐constrained simulations to probe controls on soil moisture‐precipitation feedbacks over tropical land.
</summary>
<dc:date>2023-08-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Neural‐Network Parameterization of Subgrid Momentum Transport in the Atmosphere</title>
<link href="https://hdl.handle.net/1721.1/165748" rel="alternate"/>
<author>
<name>Yuval, Janni</name>
</author>
<author>
<name>O’Gorman, Paul A</name>
</author>
<id>https://hdl.handle.net/1721.1/165748</id>
<updated>2026-04-30T03:09:25Z</updated>
<published>2023-04-06T00:00:00Z</published>
<summary type="text">Neural‐Network Parameterization of Subgrid Momentum Transport in the Atmosphere
Yuval, Janni; O’Gorman, Paul A
Attempts to use machine learning to develop atmospheric parameterizations have mainly focused on subgrid effects on temperature and moisture, but subgrid momentum transport is also important in simulations of the atmospheric circulation. Here, we use neural networks to develop a subgrid momentum transport parameterization that learns from coarse‐grained output of a high‐resolution atmospheric simulation in an idealized aquaplanet domain. We show that substantial subgrid momentum transport occurs due to convection. The neural‐network parameterization has skill in predicting momentum fluxes associated with convection, although its skill for subgrid momentum fluxes is lower compared to subgrid energy and moisture fluxes. The parameterization conserves momentum, and when implemented in the same atmospheric model at coarse resolution it leads to stable simulations and tends to reduce wind biases, although it over‐corrects for one configuration tested. Overall, our results show that it is challenging to predict subgrid momentum fluxes and that machine‐learning momentum parameterization gives promising results.
</summary>
<dc:date>2023-04-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Predicting Characteristic Length Scales of Barrier Island Segmentation in Microtidal Environments</title>
<link href="https://hdl.handle.net/1721.1/165747" rel="alternate"/>
<author>
<name>Palermo, RV</name>
</author>
<author>
<name>Ashton, AD</name>
</author>
<author>
<name>Nepf, H</name>
</author>
<author>
<name>Kule, M</name>
</author>
<author>
<name>Swanson, T</name>
</author>
<id>https://hdl.handle.net/1721.1/165747</id>
<updated>2026-04-30T03:09:53Z</updated>
<published>2024-10-05T00:00:00Z</published>
<summary type="text">Predicting Characteristic Length Scales of Barrier Island Segmentation in Microtidal Environments
Palermo, RV; Ashton, AD; Nepf, H; Kule, M; Swanson, T
Segmented barrier islands can be found in regions with small tidal ranges. In contrast to tidally dominated barriers, where inlet dynamics are thought to control island length scales, the controls on barrier island length scales in wave‐dominated environments have not been quantified. These microtidal barriers typically have a curved shoreline, suggesting the influence of wave‐driven alongshore sediment transport. Microtidal barriers are also typically hydrodynamically isolated from one another, as weak tidal flows limit interactions between adjoining barriers. To better understand the controls on and scales of barrier segmentation in the relative absence of tides, here we develop a theoretical framework to estimate the alongshore length scales at which a barrier will either breach or heal following a disturbance in the barrier morphology. The non‐dimensional framework compares the timescales of overwash (advective) and alongshore sediment transport (diffusive) processes along barrier island chains. We then apply this framework to modern barrier islands in the microtidal Gulf of Mexico using wave hindcast data and the lengths, widths, heights, and lagoon depths measured from remotely sensed geospatial data and topobathymetric data. We find that most of these barriers are currently longer than their critical length scale, often as a result of coastal restoration efforts. Our critical length scale analysis suggests that most of the Gulf of Mexico barriers are vulnerable to segmentation despite coastal restoration efforts intended to protect fisheries and the mainland coasts.
</summary>
<dc:date>2024-10-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>DATA-DRIVEN DETECTION OF EN-ROUTE CONVECTIVE WEATHER AVOIDANCE AND DEVELOPMENT OF A WEATHER ASSESSMENT MODEL</title>
<link href="https://hdl.handle.net/1721.1/165746" rel="alternate"/>
<author>
<name>Price, Rachel</name>
</author>
<author>
<name>Hansman, R. John</name>
</author>
<id>https://hdl.handle.net/1721.1/165746</id>
<updated>2026-04-30T03:00:49Z</updated>
<published>2026-04-29T00:00:00Z</published>
<summary type="text">DATA-DRIVEN DETECTION OF EN-ROUTE CONVECTIVE WEATHER AVOIDANCE AND DEVELOPMENT OF A WEATHER ASSESSMENT MODEL
Price, Rachel; Hansman, R. John
</summary>
<dc:date>2026-04-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>North–South Disparity in Impact of Climate Change on “Outdoor Days”</title>
<link href="https://hdl.handle.net/1721.1/165745" rel="alternate"/>
<author>
<name>Choi, Yeon-Woo</name>
</author>
<author>
<name>Khalifa, Muhammad</name>
</author>
<author>
<name>Eltahir, Elfatih AB</name>
</author>
<id>https://hdl.handle.net/1721.1/165745</id>
<updated>2026-04-30T03:08:42Z</updated>
<published>2024-06-15T00:00:00Z</published>
<summary type="text">North–South Disparity in Impact of Climate Change on “Outdoor Days”
Choi, Yeon-Woo; Khalifa, Muhammad; Eltahir, Elfatih AB
Here, we introduce the concept of “outdoor days” to describe how climate change can affect quality of life for different communities and individuals. An outdoor day is characterized by moderate temperature, neither too cold nor too hot, allowing most people to enjoy outdoor activities. The number of “outdoor days” is a nonlinear function of the daily surface air temperature. If the latter falls within a specific range describing assumed thermal comfort conditions, then we assign that day as an “outdoor day.” Using this function, we describe climate change impacts on temperature differently, compared to other studies which often describe these impacts in terms of the linear averaging of daily surface air temperature. The introduction of this new concept offers another way for communicating how climate change may impact the quality of life for individuals who usually plan their outdoor activities based on how local weather conditions compare to their preferred levels of thermal comfort. Based on our analysis of regional variations in “outdoor days,” we present observational and modeling evidence of a north–south disparity in climate change impacts. Under high-emission scenarios, CMIP5 and CMIP6 models project fewer “outdoor days” for people living in developing countries, primarily located in low-latitude regions. Meanwhile, developed countries in mid- and high-latitude regions could gain more “outdoor days,” redistributed across seasons.
</summary>
<dc:date>2024-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Zonal Seasonal Cycle of Tropical Precipitation: Introducing the Indo-Pacific Monsoonal Mode</title>
<link href="https://hdl.handle.net/1721.1/165744" rel="alternate"/>
<author>
<name>Tuckman, PJ</name>
</author>
<author>
<name>Smyth, Jane</name>
</author>
<author>
<name>Lutsko, Nicholas J</name>
</author>
<author>
<name>Marshall, John</name>
</author>
<id>https://hdl.handle.net/1721.1/165744</id>
<updated>2026-04-30T03:10:39Z</updated>
<published>2024-07-15T00:00:00Z</published>
<summary type="text">The Zonal Seasonal Cycle of Tropical Precipitation: Introducing the Indo-Pacific Monsoonal Mode
Tuckman, PJ; Smyth, Jane; Lutsko, Nicholas J; Marshall, John
The intertropical convergence zone (ITCZ) is associated with a zonal band of strong precipitation that migrates meridionally over the seasonal cycle. Tropical precipitation also migrates zonally, such as from the South Asian monsoon in Northern Hemisphere summer (JJA) to the precipitation maximum of the west Pacific in Northern Hemisphere winter (DJF). To explore this zonal movement in the Indo-Pacific sector, we analyze the seasonal cycle of tropical precipitation using a 2D energetic framework and study idealized atmosphere–ocean simulations with and without ocean dynamics. In the observed seasonal cycle, an atmospheric energy and precipitation anomaly forms over South Asia in northern spring and summer due to heating over land. It is then advected eastward into the west Pacific in northern autumn and remains there due to interactions with the Pacific cold tongue and equatorial easterlies. We interpret this phenomenon as a “monsoonal mode,” a zonally propagating moist energy anomaly of continental and seasonal scale. To understand the behavior of the monsoonal mode, we develop and explore an analytical model in which the monsoonal mode is advected by low-level winds, is sustained by interaction with the ocean, and decays due to the free tropospheric mixing of energy.
</summary>
<dc:date>2024-07-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>The QBO–MJO Connection: A Possible Role for the SST and ENSO</title>
<link href="https://hdl.handle.net/1721.1/165743" rel="alternate"/>
<author>
<name>Randall, David A</name>
</author>
<author>
<name>Tziperman, Eli</name>
</author>
<author>
<name>Branson, Mark D</name>
</author>
<author>
<name>Richter, Jadwiga H</name>
</author>
<author>
<name>Kang, Wanying</name>
</author>
<id>https://hdl.handle.net/1721.1/165743</id>
<updated>2026-04-30T03:10:31Z</updated>
<published>2023-09-15T00:00:00Z</published>
<summary type="text">The QBO–MJO Connection: A Possible Role for the SST and ENSO
Randall, David A; Tziperman, Eli; Branson, Mark D; Richter, Jadwiga H; Kang, Wanying
We examine the hypothesis that the observed connection between the stratospheric quasi-biennial oscillation (QBO) and the strength of the Madden–Julian oscillation (MJO) is modulated by the sea surface temperature (SST)—for example, by El Niño–Southern Oscillation (ENSO). A composite analysis shows that, globally, La Niña SSTs are remarkably similar to those that occur during the easterly phase of the QBO. A maximum covariance analysis suggests that MJO power and SST are strongly linked on both the ENSO time scale and the QBO time scale. We analyze simulations with a modified configuration of version 2 of the Community Earth System Model, with a high top and fine vertical resolution. The model is able to simulate ENSO, the QBO, and the MJO. The ocean-coupled version of the model simulates the QBO, ENSO, and MJO, but does not simulate the observed QBO–MJO connection. When driven with prescribed observed SST anomalies based on composites for QBO east and QBO west (QBOE and QBOW), however, the same atmospheric model produces a modest enhancement of MJO power during QBOE relative to QBOW, as observed. We explore the possibility that the SST anomalies are forced by the QBO itself. Indeed, composite Hovmöller diagrams based on observations show the propagation of QBO zonal wind anomalies all the way from the upper stratosphere to the surface. Also, subsurface ocean temperature composites reveal a similarity between the western Pacific and Indian Ocean subsurface signal between La Niña and QBOE.
</summary>
<dc:date>2023-09-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Different Propagation Mechanisms of Deep and Shallow Wintertime Extratropical Cyclones over the North Pacific</title>
<link href="https://hdl.handle.net/1721.1/165742" rel="alternate"/>
<author>
<name>Yao, Yuling</name>
</author>
<author>
<name>Zhang, Yang</name>
</author>
<author>
<name>Hodges, Kevin I</name>
</author>
<author>
<name>Tamarin-Brodsky, Talia</name>
</author>
<id>https://hdl.handle.net/1721.1/165742</id>
<updated>2026-04-30T03:07:36Z</updated>
<published>2023-12-01T00:00:00Z</published>
<summary type="text">Different Propagation Mechanisms of Deep and Shallow Wintertime Extratropical Cyclones over the North Pacific
Yao, Yuling; Zhang, Yang; Hodges, Kevin I; Tamarin-Brodsky, Talia
Extratropical cyclones (ETCs) are three-dimensional synoptic systems in the middle and high latitudes. Previous studies on ETC propagation have typically focused on cyclones identified at a single level. However, more recent studies have found that ETCs have diverse vertical structures and cyclones with different vertical extents always exhibit distinct characteristics and surface impacts. In this work, we study the movement of wintertime (December–February) extratropical cyclones by classifying North Pacific ETCs into deep cyclones, shallow low-level cyclones, and shallow upper-level cyclones, based on reanalysis data from 1979 to 2019. Applying a Lagrangian perspective, we track the cyclones at different vertical levels to investigate the different characteristics and mechanisms for the propagation of deep and shallow ETCs. A potential vorticity (PV) tendency analysis of cyclone-tracking composites reveals that, for deep cyclones, the diabatic heating at 850 hPa and the horizontal advection by the stationary flow at 500 hPa are the main contributors to the poleward movement. For shallow cyclones, the nonlinear advection terms play a dominant role in their meridional motion, advecting shallow low-level cyclones poleward but shallow upper-level cyclones equatorward. A piecewise PV inversion analysis suggests that the nonlinear advection by winds induced from upper-level PV anomalies is responsible for the different performance of nonlinear advection terms for shallow low-level and upper-level cyclones. These findings further our understanding of the mechanisms and variations of cyclone propagation.
</summary>
<dc:date>2023-12-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Global Climate Impacts of Greenland and Antarctic Meltwater: A Comparative Study</title>
<link href="https://hdl.handle.net/1721.1/165741" rel="alternate"/>
<author>
<name>Li, Qian</name>
</author>
<author>
<name>Marshall, John</name>
</author>
<author>
<name>Rye, Craig D</name>
</author>
<author>
<name>Romanou, Anastasia</name>
</author>
<author>
<name>Rind, David</name>
</author>
<author>
<name>Kelley, Maxwell</name>
</author>
<id>https://hdl.handle.net/1721.1/165741</id>
<updated>2026-04-30T03:07:30Z</updated>
<published>2023-06-01T00:00:00Z</published>
<summary type="text">Global Climate Impacts of Greenland and Antarctic Meltwater: A Comparative Study
Li, Qian; Marshall, John; Rye, Craig D; Romanou, Anastasia; Rind, David; Kelley, Maxwell
Both the Greenland and Antarctic ice sheets have been melting at an accelerating rate over recent decades. Meltwater from Greenland might be expected to initiate a climate response that is distinct, and perhaps different from, that associated with Antarctic meltwater. Which one might elicit a greater climate response, and what mechanisms are involved? To explore these questions, we apply climate response functions (CRFs) to guide a series of meltwater-perturbation experiments using a fully coupled climate model. In both hemispheres, meltwater drives atmospheric cooling, sea ice expansion, and strengthened Hadley and Ferrel cells. Greenland meltwater induces a slowdown of the Atlantic meridional overturning circulation (AMOC) and a cooling of the subsurface ocean in the northern high latitudes. Antarctic meltwater, instead, induces a slowdown of the Antarctic Bottom Water formation and a warming of the subsurface ocean around Antarctica. For melt rates up to 2000 Gt yr−1, the climate response is rather linear. However, as melt rates increase to 5000 Gt yr−1, the climate response becomes nonlinear. Due to a collapsed AMOC, the climate response is superlinear at high Greenland melt rates. Instead, the climate response is sublinear at high Antarctic melt rates, due to the halting of the northward expansion of Antarctic sea ice by warm surface waters. Finally, in the linear limit, we use CRFs and linear convolution theory to make projections of important climate parameters in response to meltwater scenarios, which suggest that Antarctic meltwater will become a major driver of climate change, dominating that of Greenland meltwater, as the current century proceeds.
</summary>
<dc:date>2023-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Impact of x rays on the sensitivity of CR-39 detectors to 2.4-MeV protons</title>
<link href="https://hdl.handle.net/1721.1/165740" rel="alternate"/>
<author>
<name>Kishimori, R</name>
</author>
<author>
<name>Cufari, M</name>
</author>
<author>
<name>Zhong-Johnson, EZL</name>
</author>
<author>
<name>Buschmann, BI</name>
</author>
<author>
<name>Sinskey, AJ</name>
</author>
<author>
<name>Johnson, TM</name>
</author>
<author>
<name>Vanderloo, N</name>
</author>
<author>
<name>DeVault, A</name>
</author>
<author>
<name>Foo, BC</name>
</author>
<author>
<name>Vargas, J</name>
</author>
<author>
<name>Dannhoff, SG</name>
</author>
<author>
<name>Evans, TE</name>
</author>
<author>
<name>Kunimune, J</name>
</author>
<author>
<name>Lawrence, Y</name>
</author>
<author>
<name>Pearcy, JA</name>
</author>
<author>
<name>Reichelt, BL</name>
</author>
<author>
<name>Wink, CW</name>
</author>
<author>
<name>Petrasso, RD</name>
</author>
<author>
<name>Johnson, M Gatu</name>
</author>
<author>
<name>Frenje, JA</name>
</author>
<id>https://hdl.handle.net/1721.1/165740</id>
<updated>2026-04-30T03:07:57Z</updated>
<published>2025-07-18T00:00:00Z</published>
<summary type="text">Impact of x rays on the sensitivity of CR-39 detectors to 2.4-MeV protons
Kishimori, R; Cufari, M; Zhong-Johnson, EZL; Buschmann, BI; Sinskey, AJ; Johnson, TM; Vanderloo, N; DeVault, A; Foo, BC; Vargas, J; Dannhoff, SG; Evans, TE; Kunimune, J; Lawrence, Y; Pearcy, JA; Reichelt, BL; Wink, CW; Petrasso, RD; Johnson, M Gatu; Frenje, JA
Solid-state nuclear track detectors, such as CR-39, lose sensitivity when subjected to doses of x rays on the order of 1 Gy in nuclear-fusion relevant experiments. As a result, the formed tracks have, in general, smaller maximum radii and shallower maximum depths. Presented here are experiments using atomic force microscopy to measure the CR-39 sensitivity parameter Vt/Vb, the ratio of track to bulk etch rates, for ∼2.4 MeV protons. The measurements revealed that absorbed x-ray doses of the order of 1 Gy reduced the CR-39 track diameters by a factor of 3 from ∼1200 to ∼400 nm and reduced the track depths by an order of magnitude from ∼550 to ∼50 nm. The corresponding change in the sensitivity parameter was inferred and found to have substantially decreased from ∼1.1 to ≲ 1.01. Doses in excess of 0.5 Gy reduced the track diameter, at an etch time of 2 h, below the 1.0 μm limit typical of optical microscopy methods used when scanning large, i.e., ≳ 25 cm2 , samples of CR-39. The findings suggest that the mechanism of sensitivity loss is driven by x-ray induced cross-linking of the bulk CR-39. The enhanced cross-linking reduces the solubility of the material along charged-particle trajectories compared with that of the bulk material. Representative absorbed doses of between 0.01 and 1 Gy in CR-39 on OMEGA and NIF in typical experimental configurations are then compared with the results.
</summary>
<dc:date>2025-07-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wake turbulence modeling in stratified atmospheric flows using a novel k−ℓ model</title>
<link href="https://hdl.handle.net/1721.1/165739" rel="alternate"/>
<author>
<name>Klemmer, Kerry S</name>
</author>
<author>
<name>Howland, Michael F</name>
</author>
<id>https://hdl.handle.net/1721.1/165739</id>
<updated>2026-04-30T03:06:59Z</updated>
<published>2025-05-26T00:00:00Z</published>
<summary type="text">Wake turbulence modeling in stratified atmospheric flows using a novel k−ℓ model
Klemmer, Kerry S; Howland, Michael F
As turbines continue to grow in hub height and rotor diameter and wind farms grow larger, consideration of stratified atmospheric boundary layer (ABL) processes in wind power models becomes increasingly important. Atmospheric stratification can considerably alter the boundary layer structure and flow characteristics through buoyant forcing. Variations in buoyancy, and corresponding ABL stability, in both space and time impact ABL wind speed shear, wind direction shear, boundary layer height, turbulence kinetic energy, and turbulence intensity. In addition, the presence of stratification will result in a direct buoyant forcing within the wake region. These ABL mechanisms affect turbine power production, the momentum and kinetic energy deficit wakes generated by turbines, and the turbulent mixing and kinetic energy entrainment in wind farms. Presently, state-of-practice engineering models of mean wake momentum utilize highly empirical turbulence models that do not explicitly account for ABL stability. Models also often neglect the interaction between the wake momentum deficit and the turbulence kinetic energy added by the wake, which depends on stratification. In this work, we develop a turbulence model that models the wake-added turbulence kinetic energy, and we couple it with a wake model based on the parabolized Reynolds-averaged Navier–Stokes equations. Comparing the model predictions to large eddy simulations across stabilities (Obukhov lengths) and surface roughness lengths, we find lower prediction error in both power production and the wake velocity field across the ABL conditions and error metrics investigated.
</summary>
<dc:date>2025-05-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Active search for bifurcations</title>
<link href="https://hdl.handle.net/1721.1/165738" rel="alternate"/>
<author>
<name>Psarellis, Yorgos M</name>
</author>
<author>
<name>Sapsis, Themistoklis P</name>
</author>
<author>
<name>Kevrekidis, Ioannis G</name>
</author>
<id>https://hdl.handle.net/1721.1/165738</id>
<updated>2026-04-30T03:09:10Z</updated>
<published>2025-05-28T00:00:00Z</published>
<summary type="text">Active search for bifurcations
Psarellis, Yorgos M; Sapsis, Themistoklis P; Kevrekidis, Ioannis G
Bifurcations mark qualitative changes of long-term behavior in dynamical systems and can often signal sudden (“hard”) transitions or catastrophic events (divergences). Accurately locating them is critical not just for deeper understanding of observed dynamic behavior, but also for designing efficient interventions. When the dynamical system at hand is complex, possibly noisy, and expensive to sample, standard (e.g., continuation based) numerical methods may become impractical. We propose an active learning framework, where Bayesian Optimization is leveraged to discover saddle-node or Hopf bifurcations, from a judiciously chosen small number of vector field observations. Such an approach becomes especially attractive in systems whose state × parameter space exploration is resource-limited. It also naturally provides a framework for uncertainty quantification (aleatoric and epistemic), useful in systems with inherent stochasticity.
</summary>
<dc:date>2025-05-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>A grain boundary embrittlement genome for substitutional cubic alloys</title>
<link href="https://hdl.handle.net/1721.1/165737" rel="alternate"/>
<author>
<name>Tuchinda, Nutth</name>
</author>
<author>
<name>Olson, Gregory B</name>
</author>
<author>
<name>Schuh, Christopher A</name>
</author>
<id>https://hdl.handle.net/1721.1/165737</id>
<updated>2026-04-30T03:10:12Z</updated>
<published>2025-04-29T00:00:00Z</published>
<summary type="text">A grain boundary embrittlement genome for substitutional cubic alloys
Tuchinda, Nutth; Olson, Gregory B; Schuh, Christopher A
Grain boundary chemistry plays a critical role for the properties of metals and alloys, yet there is a lack of consistent datasets for alloy design and development. With the advent of artificial intelligence and machine learning in materials science, open materials models and datasets can be used to overcome such challenges. Here, we use a universal interatomic potential to compute a grain boundary segregation and embrittlement genome for the Σ5[001](210) grain boundary for FCC and BCC binary alloys. The grain boundary database calculated here serves as a design tool for the embrittlement of high-angle grain boundaries for alloys across 30 base metals of Ag, Al, Au, Ba, Ca, Ce, Co, Cr, Cs, Cu, Fe (both BCC and FCC), Ir, K, Li, Mo, Na, Nb, Ni, Pb, Pd, Pt, Rb, Rh, Sr, Ta, Ti, V, W, Yb, and Zr with 75 solute elements for each.
</summary>
<dc:date>2025-04-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>An accessible instrument for measuring soft material mechanical properties</title>
<link href="https://hdl.handle.net/1721.1/165736" rel="alternate"/>
<author>
<name>Unikewicz, BM</name>
</author>
<author>
<name>Pincot, AM</name>
</author>
<author>
<name>Cohen, T</name>
</author>
<id>https://hdl.handle.net/1721.1/165736</id>
<updated>2026-04-30T03:08:30Z</updated>
<published>2025-04-22T00:00:00Z</published>
<summary type="text">An accessible instrument for measuring soft material mechanical properties
Unikewicz, BM; Pincot, AM; Cohen, T
Soft material research has seen significant growth in recent years, with emerging applications in robotics, electronics, and healthcare diagnostics where understanding the material mechanical response is crucial for precision design. Traditional methods for measuring nonlinear mechanical properties of soft materials require specially sized samples that are extracted from their natural environment to be mounted on the testing instrument. This has been shown to compromise data accuracy and precision in various soft and biological materials. To overcome this, the Volume Controlled Cavity Expansion (VCCE) method was developed. This technique tests soft materials by controlling the formation rate of a liquid cavity inside the materials at the tip of an injection needle and simultaneously measuring the resisting pressure that describes the material response. Despite VCCE’s early successes, expansion of its application beyond academia has been hindered by cost, size, and expertise. In response to this, the first portable, benchtop instrument utilizing VCCE is presented here. This device, built with affordable, readily available components and open-source software, streamlines VCCE experimentation without sacrificing performance or precision. It is especially suitable for space-limited settings and designed for use by non-experts, promoting widespread adoption. The instrument’s efficacy was demonstrated through testing polydimethylsiloxane samples of varying stiffness. This study not only validates instrument performance but also sets the stage for further advancements and broader applications in soft material testing. All data, along with acquisition, control, and post-processing scripts, are made available on GitHub.
</summary>
<dc:date>2025-04-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modeling Cosmogenic Nuclides in Transiently Evolving Topography and Chemically Weathering Soils</title>
<link href="https://hdl.handle.net/1721.1/165735" rel="alternate"/>
<author>
<name>Reed, Miles M</name>
</author>
<author>
<name>Ferrier, Ken L</name>
</author>
<author>
<name>Perron, J Taylor</name>
</author>
<id>https://hdl.handle.net/1721.1/165735</id>
<updated>2026-04-29T04:49:36Z</updated>
<published>2023-09-28T00:00:00Z</published>
<summary type="text">Modeling Cosmogenic Nuclides in Transiently Evolving Topography and Chemically Weathering Soils
Reed, Miles M; Ferrier, Ken L; Perron, J Taylor
Terrestrial cosmogenic nuclides (TCN) are widely employed to infer denudation rates in mountainous landscapes. The calculation of an inferred denudation rate (Dinf) from TCN concentrations is typically performed under the assumptions that denudation rates were steady during TCN accumulation and that soil chemical weathering negligibly impacted soil mineral abundances. In many landscapes, however, denudation rates were not steady and soil composition was significantly impacted by chemical weathering, which complicates interpretation of TCN concentrations. We present a landscape evolution model that computes transient changes in topography, soil thickness, soil mineralogy, and soil TCN concentrations. We used this model to investigate TCN responses in transient landscapes by imposing idealized perturbations in tectonically (rock uplift rate) and climatically sensitive parameters (soil production efficiency, hillslope transport efficiency, and mineral dissolution rate) on initially steady-state landscapes. These experiments revealed key insights about TCN responses in transient landscapes. (a) Accounting for soil chemical erosion is necessary to accurately calculate Dinf. (b) Responses of Dinf to tectonic perturbations differ from those to climatic perturbations, suggesting that spatial and temporal patterns in Dinf are signatures of perturbation type and magnitude. (c) If soil chemical erosion is accounted for, basin-averaged Dinf inferred from TCN in stream sediment closely tracks actual basin-averaged denudation rate, showing that Dinf is a reasonable proxy for actual denudation rate, even in many transient landscapes. (d) Response times of Dinf to perturbations increase with hillslope length, implying that response times should be sensitive to the climatic, biological, and lithologic processes that control hillslope length.
</summary>
<dc:date>2023-09-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Architecture of Fluvial and Deltaic Deposits Exposed Along the Eastern Edge of the Western Fan of Jezero Crater, Mars</title>
<link href="https://hdl.handle.net/1721.1/165734" rel="alternate"/>
<author>
<name>Mangold, N</name>
</author>
<author>
<name>Caravaca, G</name>
</author>
<author>
<name>Gupta, S</name>
</author>
<author>
<name>Williams, RME</name>
</author>
<author>
<name>Dromart, G</name>
</author>
<author>
<name>Gasnault, O</name>
</author>
<author>
<name>Le Mouélic, S</name>
</author>
<author>
<name>Paar, G</name>
</author>
<author>
<name>Bell, J</name>
</author>
<author>
<name>Beyssac, O</name>
</author>
<author>
<name>Carlot, N</name>
</author>
<author>
<name>Cousin, A</name>
</author>
<author>
<name>Dehouck, E</name>
</author>
<author>
<name>Horgan, B</name>
</author>
<author>
<name>Kah, LC</name>
</author>
<author>
<name>Lasue, J</name>
</author>
<author>
<name>Maurice, S</name>
</author>
<author>
<name>Núñez, JI</name>
</author>
<author>
<name>Shuster, D</name>
</author>
<author>
<name>Stack, KM</name>
</author>
<author>
<name>Weiss, BP</name>
</author>
<author>
<name>Wiens, RC</name>
</author>
<id>https://hdl.handle.net/1721.1/165734</id>
<updated>2026-04-29T04:50:16Z</updated>
<published>2024-03-13T00:00:00Z</published>
<summary type="text">Architecture of Fluvial and Deltaic Deposits Exposed Along the Eastern Edge of the Western Fan of Jezero Crater, Mars
Mangold, N; Caravaca, G; Gupta, S; Williams, RME; Dromart, G; Gasnault, O; Le Mouélic, S; Paar, G; Bell, J; Beyssac, O; Carlot, N; Cousin, A; Dehouck, E; Horgan, B; Kah, LC; Lasue, J; Maurice, S; Núñez, JI; Shuster, D; Stack, KM; Weiss, BP; Wiens, RC
Early observations from the Perseverance rover suggested a deltaic origin for the western fan of&#13;
Jezero crater only from images of the Kodiak butte. Here, we use images from the SuperCam Remote Micro‐&#13;
Imager and the Mastcam‐Z camera to analyze the western fan front along the rover traverse, and further assess&#13;
its depositional origin. Outcrops in the middle to lower half of the hillslopes comprise planar and inclined beds&#13;
of sandstone that are interpreted as foresets of deltaic deposits. Foresets are locally structured in ∼20–25 m&#13;
thick, ∼80–100 m long, antiformal structures interpreted as deltaic mouth bars. Above these foresets,&#13;
interbedded sandstones and boulder conglomerates are interpreted as fluvial topset beds. One well‐preserved&#13;
lens of boulder conglomerate displays rounded clasts within well‐sorted sediment deposited in overall fining&#13;
upward beds. We interpret these deposits as resulting from lateral accretion within fluvial channels. Estimations&#13;
of peak discharge rates give a range between ∼100 and ∼500 m3 s&#13;
− 1&#13;
. By contrast, boulder conglomerates&#13;
exposed in the uppermost part of hillslopes are poorly sorted and truncate the underlying beds. The presence of&#13;
these boulder deposits suggests that intense sediment‐laden flood episodes occurred after the deltaic foreset and&#13;
topset beds were deposited, although the origin, timing, and relationship of these boulder deposits to the ancient&#13;
lake that once filled Jezero crater remains undetermined. Overall, these observations confirm the deltaic nature&#13;
of the fan front, and suggest a highly variable fluvial input.
</summary>
<dc:date>2024-03-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sedimentology and Stratigraphy of the Shenandoah Formation, Western Fan, Jezero Crater, Mars</title>
<link href="https://hdl.handle.net/1721.1/165733" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165733</id>
<updated>2026-04-29T04:52:18Z</updated>
<published>2024-02-15T00:00:00Z</published>
<summary type="text">Sedimentology and Stratigraphy of the Shenandoah Formation, Western Fan, Jezero Crater, Mars
Sedimentary fans are key targets of exploration on Mars because they record the history of surface aqueous activity and habitability. The sedimentary fan extending from the Neretva Vallis breach of Jezero crater's western rim is one of the Mars 2020 Perseverance rover's main exploration targets. Perseverance spent ∼250 sols exploring and collecting seven rock cores from the lower ∼25 m of sedimentary rock exposed within the fan's eastern scarp, a sequence informally named the “Shenandoah” formation. This study describes the sedimentology and stratigraphy of the Shenandoah formation at two areas, “Cape Nukshak” and “Hawksbill Gap,” including a characterization, interpretation, and depositional framework for the facies that comprise it. The five main facies of the Shenandoah formation include: laminated mudstone, laminated sandstone, low‐angle cross stratified sandstone, thin‐bedded granule sandstone, and thick‐bedded granule‐pebble sandstone and conglomerate. These facies are organized into three facies associations (FA): FA1, comprised of laminated and soft sediment‐deformed sandstone interbedded with broad, unconfined coarser‐grained granule and pebbly sandstone intervals; FA2, comprised predominantly of laterally extensive, soft‐sediment deformed laminated, sulfate‐bearing mudstone with lenses of low‐angle cross‐stratified and scoured sandstone; and FA3, comprised of dipping planar, thin‐bedded sand‐gravel couplets. The depositional model favored for the Shenandoah formation involves the transition from a sand‐dominated distal alluvial fan setting (FA1) to a stable, widespread saline lake (FA2), followed by the progradation of a river delta system (FA3) into the lake basin. This sequence records the initiation of a relatively long‐lived, habitable lacustrine and deltaic environment within Jezero crater.
</summary>
<dc:date>2024-02-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Depositional and Diagenetic Sulfates of Hogwallow Flats and Yori Pass, Jezero Crater: Evaluating Preservation Potential of Environmental Indicators and Possible Biosignatures From Past Martian Surface Waters and Groundwaters</title>
<link href="https://hdl.handle.net/1721.1/165732" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165732</id>
<updated>2026-04-29T04:55:19Z</updated>
<published>2024-02-06T00:00:00Z</published>
<summary type="text">Depositional and Diagenetic Sulfates of Hogwallow Flats and Yori Pass, Jezero Crater: Evaluating Preservation Potential of Environmental Indicators and Possible Biosignatures From Past Martian Surface Waters and Groundwaters
The Mars 2020 Perseverance rover has examined and sampled sulfate‐rich clastic rocks from the Hogwallow Flats member at Hawksbill Gap and the Yori Pass member at Cape Nukshak. Both strata are located on the Jezero crater western fan front, are lithologically and stratigraphically similar, and have been assigned to the Shenandoah formation. In situ analyses demonstrate that these are fine‐grained sandstones composed of phyllosilicates, hematite, Ca‐sulfates, Fe‐Mg‐sulfates, ferric sulfates, and possibly chloride salts. Sulfate minerals are found both as depositional grains and diagenetic features, including intergranular cement and vein‐ and vug‐cements. Here, we describe the possibility of various sulfate phases to preserve potential biosignatures and the record of paleoenvironmental conditions in fluid and solid inclusions, based on findings from analog sulfate‐rich rocks on Earth. The samples collected from these outcrops, Hazeltop and Bearwallow from Hogwallow Flats, and Kukaklek from Yori Pass, should be examined for such potential biosignatures and environmental indicators upon return to Earth.
</summary>
<dc:date>2024-02-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Magnetism of the Acapulco Primitive Achondrite and Implications for the Evolution of Partially Differentiated Bodies</title>
<link href="https://hdl.handle.net/1721.1/165731" rel="alternate"/>
<author>
<name>Mansbach, Elias N</name>
</author>
<author>
<name>Weiss, Benjamin P</name>
</author>
<author>
<name>Schnepf, Neesha R</name>
</author>
<author>
<name>Lima, Eduardo A</name>
</author>
<author>
<name>Borlina, Cauê S</name>
</author>
<author>
<name>Chatterjee, Nilanjan</name>
</author>
<author>
<name>Gattacceca, Jérôme</name>
</author>
<author>
<name>Uehara, Minoru</name>
</author>
<author>
<name>Wang, Huapei</name>
</author>
<id>https://hdl.handle.net/1721.1/165731</id>
<updated>2026-04-29T04:53:38Z</updated>
<published>2023-12-14T00:00:00Z</published>
<summary type="text">Magnetism of the Acapulco Primitive Achondrite and Implications for the Evolution of Partially Differentiated Bodies
Mansbach, Elias N; Weiss, Benjamin P; Schnepf, Neesha R; Lima, Eduardo A; Borlina, Cauê S; Chatterjee, Nilanjan; Gattacceca, Jérôme; Uehara, Minoru; Wang, Huapei
Primitive achondrites like the acapulcoites-lodranites (AL) clan are meteorites that formed on bodies in the process of forming a metallic core, providing a unique window into how early solar system processes transformed unmelted material into differentiated bodies. However, the size and structure of the parent body of ALs and other primitive achondrites are largely unknown. Paleomagnetism can establish the presence or absence of a metallic core by looking for evidence of a dynamo field. We conducted a magnetic study of the Acapulco acapulcoite to determine its ferromagnetic minerals and their recording properties. This is the first detailed rock magnetic and first paleomagnetic study of a primitive achondrite group. We determined that metal inclusions inside silicate grains consist of two magnetic minerals, kamacite and tetrataenite, which have robust recording properties. However, the mechanisms and timing by which these minerals acquired any natural remanent magnetization are unknown. Despite this, Acapulco has not been substantially remagnetized since arriving on Earth and therefore should retain a record dating to 4.55 billion years ago. Future studies could characterize this record by using high-resolution magnetometry measurements of individual populations of grains and developing an understanding of how and when they became magnetized. Our discovery of tetrataenite in ALs provides the first mineralogical evidence for slow cooling [&lt;∼5–10 × 103°C per million years (Ma−1)] of the AL parent body at low temperatures (∼320°C). Its presence suggests the AL parent body is unlikely to have been catastrophically disrupted at AL peak temperatures (∼1,200°C) without subsequent reaccretion.
</summary>
<dc:date>2023-12-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Collection and In Situ Analyses of Regolith Samples by the Mars 2020 Rover: Implications for Their Formation and Alteration History</title>
<link href="https://hdl.handle.net/1721.1/165730" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165730</id>
<updated>2026-04-29T04:49:56Z</updated>
<published>2025-02-06T00:00:00Z</published>
<summary type="text">Collection and In Situ Analyses of Regolith Samples by the Mars 2020 Rover: Implications for Their Formation and Alteration History
The Perseverance rover has sampled mm-size lithic fragments containing olivine likely from at least two source regions from the surface of an inactive megaripple surface, and fine-grained material from the surface and to a depth of ∼4–6 cm. Some of the mm-size grains lack a coherent diffraction pattern measured by PIXL, consistent with the presence of poorly ordered secondary phases that have been altered. Analysis of these materials on Earth will allow examination of materials that have experienced aqueous, potentially habitable environments that could contain biosignatures. Fluorescence of three different patterns was detected, consistent with inorganic emissions from silica defects or rare earth elements in certain mineral phases, although organic origin cannot be excluded. Analysis of Autofocus Context Imager and Wide Angle Topographic Sensor for Operations and eNgineering images of the subsurface material and MEDA thermal inertia measurements indicate average grain sizes of ∼125 and ∼150 μm, respectively, for the bulk material within the megaripple. The fine-grained material in the sampling location indicates chemical compositions similar to previously proposed global components as well as airfall dust. In situ and associated atmospheric measurements provide evidence of recent processes likely including water vapor in soil crust formation. The sampled material will therefore help elucidate the formation of Martian soils; current surface-atmosphere interactions; the composition, shape, and size distribution of dust grains valuable for studies of past and present Martian climate and for assessing potential health and other risks to human missions; and ancient, aqueously altered environments that could have been habitable, and, if Mars contained life, possibly contain biosignatures.
</summary>
<dc:date>2025-02-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Divergent Behavior of Hydrothermal Plumes in Fresh Versus Salty Icy Ocean Worlds</title>
<link href="https://hdl.handle.net/1721.1/165729" rel="alternate"/>
<author>
<name>Bire, Suyash</name>
</author>
<author>
<name>Mittal, Tushar</name>
</author>
<author>
<name>Kang, Wanying</name>
</author>
<author>
<name>Ramadhan, Ali</name>
</author>
<author>
<name>Tuckman, Philip J</name>
</author>
<author>
<name>German, Christopher R</name>
</author>
<author>
<name>Thurnherr, Andreas M</name>
</author>
<author>
<name>Marshall, John</name>
</author>
<id>https://hdl.handle.net/1721.1/165729</id>
<updated>2026-04-29T04:55:15Z</updated>
<published>2023-11-21T00:00:00Z</published>
<summary type="text">Divergent Behavior of Hydrothermal Plumes in Fresh Versus Salty Icy Ocean Worlds
Bire, Suyash; Mittal, Tushar; Kang, Wanying; Ramadhan, Ali; Tuckman, Philip J; German, Christopher R; Thurnherr, Andreas M; Marshall, John
Water parcels close to their freezing point contract and become heavy on warming if they are sufficiently fresh (salinity less than 22g kg−1 for earth's ocean), but expand and become buoyant when salty (salinity greater than 22g kg−1). We explore the resulting divergent behavior of hydrothermal plumes in fresh versus salty icy ocean worlds, with particular emphasis on Europa and Enceladus. Large, salty, putative Europa-like oceans, develop buoyant plumes which rise upwards in the water column when energized by localized hydrothermal vents. Instead, small, fresher, putative Enceladus-like oceans, can develop bottom-hugging gravity currents when heated near the freezing point, due to the anomalous contraction of fluid parcels on warming. Such a bottom-filling regime would most likely be a transient stage in the evolution of an icy moon over geological time. The contrasting dynamics are highlighted and rationalized in terms of key non-dimensional numbers with a focus on the ability of ocean to carry bio-markers from the hydrothermal activity at the bottom to the ice shell at the top. Finally, the implications of our study for prioritizing future missions to icy moons are discussed. An advantage of a mission to a large icy moon (e.g., Europa), rather than a smaller target (e.g., Enceladus), is that a larger moon's ocean would likely support buoyant convection, which could bring signatures of seafloor venting to the outer ice-shell regardless of that ocean's salinity. For smaller icy moons, the nature of convection would hinge on its assumed salinity.
</summary>
<dc:date>2023-11-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Geostatistics‐Based Tool to Characterize Spatio‐Temporal Patterns of Remotely Sensed Land Surface Temperature Fields Over the Contiguous United States</title>
<link href="https://hdl.handle.net/1721.1/165728" rel="alternate"/>
<author>
<name>Torres‐Rojas, L</name>
</author>
<author>
<name>Waterman, T</name>
</author>
<author>
<name>Cai, J</name>
</author>
<author>
<name>Zorzetto, E</name>
</author>
<author>
<name>Wainwright, HM</name>
</author>
<author>
<name>Chaney, NW</name>
</author>
<id>https://hdl.handle.net/1721.1/165728</id>
<updated>2026-04-29T04:53:26Z</updated>
<published>2024-09-13T00:00:00Z</published>
<summary type="text">A Geostatistics‐Based Tool to Characterize Spatio‐Temporal Patterns of Remotely Sensed Land Surface Temperature Fields Over the Contiguous United States
Torres‐Rojas, L; Waterman, T; Cai, J; Zorzetto, E; Wainwright, HM; Chaney, NW
Surface fluxes and states can recur and remain consistent across various spatial and temporal scales, forming space-time patterns. Quantifying and understanding the observed patterns is desirable, as they provide information about the dynamics of the processes involved. This study introduces the empirical spatio-temporal covariance function and a corresponding parametric covariance function as tools to identify and characterize spatio-temporal patterns in remotely sensed fields. The method is demonstrated using 2 km hourly GOES-16/17 land surface temperature (LST) data over the Contiguous United States by splitting the area into 1.0° × 1.0° domains. The summer day-time LST ESTCFs for 2018 to 2022 are derived for each domain, and a parametric covariance model is fitted. Clustering analysis is applied to detect areas with similar spatio-temporal LST patterns. Six main zones within CONUS are identified and characterized based on their variance and temporal and spatial characteristic length scales (i.e., scales for which the temperature variations are temporally and spatially related), respectively: (a) Eastern plains with 3 K2, ∼6 hr, and 0.15°, (b) Gulf of California with 60 K2, ∼8 hr, and 0.34°, (c) mountains and coasts transition 1 with 16 K2, ∼11 hr, and 0.25°, (d) central US, Midwest, and South cities with 5.5 K2, ∼8 hr, and ∼0.2°, (e) mountains and coasts transition 2 with ∼10 K2, ∼8 hr, and 0.2°, and (f) largest mountains and coastlines with ∼19 K2, ∼13 hr, and 0.3°. The tools introduced provide a pathway to formally identify and summarize the spatio-temporal patterns observed in remotely sensed fields and relate those to more complex processes within the Soil-Vegetation-Atmosphere System.
</summary>
<dc:date>2024-09-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wind‐Induced Quasi‐Seasonal and Quasi‐Monthly Variations of Near‐Bottom Temperature on the Chukchi Slope of the Southwestern Canada Basin</title>
<link href="https://hdl.handle.net/1721.1/165727" rel="alternate"/>
<author>
<name>Ku, Ahyoung</name>
</author>
<author>
<name>Jeon, Chanhyung</name>
</author>
<author>
<name>Peacock, Thomas</name>
</author>
<author>
<name>Chae, Jeong‐Yeob</name>
</author>
<author>
<name>Park, Taewook</name>
</author>
<author>
<name>Cho, Kyoung‐Ho</name>
</author>
<author>
<name>Park, Jae‐Hun</name>
</author>
<id>https://hdl.handle.net/1721.1/165727</id>
<updated>2026-04-29T04:54:50Z</updated>
<published>2024-07-18T00:00:00Z</published>
<summary type="text">Wind‐Induced Quasi‐Seasonal and Quasi‐Monthly Variations of Near‐Bottom Temperature on the Chukchi Slope of the Southwestern Canada Basin
Ku, Ahyoung; Jeon, Chanhyung; Peacock, Thomas; Chae, Jeong‐Yeob; Park, Taewook; Cho, Kyoung‐Ho; Park, Jae‐Hun
The time series of near‐bottom temperatures collected from September 2018 until August 2020 from an array of three current‐ and pressure‐recording inverted echo sounders showed quasi‐seasonal and quasi‐monthly (∼28 days) variations at a depth of ∼1,300 m near the Chukchi slope in the western Arctic Ocean. They revealed an increase of ∼0.1°C during the winter‐spring period compared with the summer‐fall period. These variations were observed in the data‐assimilated Hybrid Coordinate Ocean Model (HYCOM) outputs near the observation site (correlation coefficient &amp;gt;0.7). They confirmed that variations in near‐bottom temperature are related to changes in the intensity of the Atlantic Water (AW) boundary current, concurrent with the deepening of the lower AW layer by approximately 50 m. The difference in sea surface height (SSH) between the Canada Basin and the Chukchi Shelf increased because of the negative wind stress curl (WSC) and retarded the AW boundary current according to the geostrophic effect. When the near‐bottom temperature increased during the winter‐spring period, the SSH in the Chukchi Shelf was lower than that in the summer‐fall period because of the less negative WSC. Quasi‐monthly variations were related to SSH on the Chukchi Shelf owing to the negative WSC. HYCOM outputs from 1994 to 2015 showed that the AW boundary current weakened more recently than in the past due to the increased melting of sea ice. The results imply that a longer sea‐ice‐free season in the Arctic amplifies changes in the AW boundary current and deep ocean temperature owing to increased atmospheric forcing.
</summary>
<dc:date>2024-07-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Low‐Frequency Earthquakes Downdip of Deep Slow Slip Beneath the North Island of New Zealand</title>
<link href="https://hdl.handle.net/1721.1/165726" rel="alternate"/>
<author>
<name>Aden‐Antoniów, F</name>
</author>
<author>
<name>Frank, WB</name>
</author>
<author>
<name>Chamberlain, CJ</name>
</author>
<author>
<name>Townend, J</name>
</author>
<author>
<name>Wallace, LM</name>
</author>
<author>
<name>Bannister, S</name>
</author>
<id>https://hdl.handle.net/1721.1/165726</id>
<updated>2026-04-29T04:50:14Z</updated>
<published>2024-05-10T00:00:00Z</published>
<summary type="text">Low‐Frequency Earthquakes Downdip of Deep Slow Slip Beneath the North Island of New Zealand
Aden‐Antoniów, F; Frank, WB; Chamberlain, CJ; Townend, J; Wallace, LM; Bannister, S
We report the first catalog of low‐frequency earthquakes in the Hikurangi subduction zone, located beneath the Kaimanawa Range of the North Island at 50 km depth, downdip of regularly recurring (every 4–5 years) deep M7 slow slip events. To systematically detect low‐frequency earthquakes within the regional continuous seismic data, we utilized a matched‐filter approach with template waveforms derived from previous observations of tectonic tremor. We built our catalog of 36 low‐frequency earthquake sources, that produced almost 21,000 events over more than a decade, with two matched‐filter search iterations. In each iteration, the detections were gathered into families and their coherent waveforms processed and stacked to extract high‐quality waveforms, allowing us to pick seismic phase arrivals to locate the low‐frequency earthquakes. We highlight three characteristic features to validate that our detected events are indeed low‐frequency earthquakes: the eponymous deficit of high frequencies in their seismic waveforms, the episodic swarms of activity that define their activity through time, and their location at the plate boundary with a double‐couple source mechanism and geometry consistent with the subduction interface. Considering the observed low‐frequency earthquakes' relationship to neighboring slow slip, we observe the event swarms to occur much more frequently than the M7 slow slip events located just updip. Similar to other deep low‐frequency earthquakes in other subduction zones, we suggest that this characteristic clustering in time is driven by more frequent, smaller slow slip events that are not clearly observable at the surface.
</summary>
<dc:date>2024-05-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Partial Ruptures Cannot Explain the Long Recurrence Intervals of Repeating Earthquakes</title>
<link href="https://hdl.handle.net/1721.1/165725" rel="alternate"/>
<author>
<name>Turner, AR</name>
</author>
<author>
<name>Hawthorne, JC</name>
</author>
<author>
<name>Cattania, C</name>
</author>
<id>https://hdl.handle.net/1721.1/165725</id>
<updated>2026-04-29T04:50:45Z</updated>
<published>2024-01-22T00:00:00Z</published>
<summary type="text">Partial Ruptures Cannot Explain the Long Recurrence Intervals of Repeating Earthquakes
Turner, AR; Hawthorne, JC; Cattania, C
Repeating earthquakes repeatedly rupture the same fault asperities, which are likely loaded to failure by surrounding aseismic slip. However, repeaters occur less often than would be expected if these earthquakes accommodate all of the long‐term slip on the asperities. Here, we assess a possible explanation for this slip discrepancy: partial ruptures. On asperities that are much larger than the nucleation radius, a fraction of the slip could be accommodated by smaller ruptures on the same asperities. We search for partial ruptures of repeating earthquakes in Parkfield using the Northern California earthquakes catalog. We find 3991 individual repeaters which have 4468 partial ruptures. The presence of partial ruptures suggests that the asperities of repeating earthquakes are much larger than the nucleation radius. However, we find that partial ruptures could accommodate only around 25% of the slip on repeating earthquake patches. A 25% increase in the slip budget can explain only a small portion of the long recurrence intervals of repeating earthquakes.
</summary>
<dc:date>2024-01-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Possible Eoarchean Records of the Geomagnetic Field Preserved in the Isua Supracrustal Belt, Southern West Greenland</title>
<link href="https://hdl.handle.net/1721.1/165724" rel="alternate"/>
<author>
<name>Nichols, Claire IO</name>
</author>
<author>
<name>Weiss, Benjamin P</name>
</author>
<author>
<name>Eyster, Athena</name>
</author>
<author>
<name>Martin, Craig R</name>
</author>
<author>
<name>Maloof, Adam C</name>
</author>
<author>
<name>Kelly, Nigel M</name>
</author>
<author>
<name>Zawaski, Mike J</name>
</author>
<author>
<name>Mojzsis, Stephen J</name>
</author>
<author>
<name>Watson, E Bruce</name>
</author>
<author>
<name>Cherniak, Daniele J</name>
</author>
<id>https://hdl.handle.net/1721.1/165724</id>
<updated>2026-04-29T04:54:19Z</updated>
<published>2024-04-24T00:00:00Z</published>
<summary type="text">Possible Eoarchean Records of the Geomagnetic Field Preserved in the Isua Supracrustal Belt, Southern West Greenland
Nichols, Claire IO; Weiss, Benjamin P; Eyster, Athena; Martin, Craig R; Maloof, Adam C; Kelly, Nigel M; Zawaski, Mike J; Mojzsis, Stephen J; Watson, E Bruce; Cherniak, Daniele J
Recovering ancient records of Earth's magnetic field is essential for determining the role of the magnetosphere in protecting early Earth from cosmic radiation and atmospheric escape. We present paleomagnetic field tests hinting that a record of Earth's 3.7‐billion‐year (Ga) old magnetic field may be preserved in the northeastern Isua Supracrustal Belt as a chemical remanent magnetization acquired during amphibolite‐grade metamorphism in the banded iron formation. Multiple petrological and geochronological lines of evidence indicate that the northernmost part of Isua has not experienced metamorphic temperatures exceeding 380°C since the Eoarchean, suggesting the rocks have not been significantly heated since magnetization was acquired. We use “pseudo” baked contact tests (intrusions emplaced 3.26–3.5 Ga ago) and a fold test (folding 3.6 Ga ago) to demonstrate that some samples preserve a ca. 3.7 Ga record of the magnetic field. We recover a field strength of &amp;gt;15 µT. This suggests that Earth's magnetic field may have been weak enough to enhance atmospheric escape during the Archean.
</summary>
<dc:date>2024-04-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Automated polarization rotation for multi-axis rotational-anisotropy second harmonic generation experiments</title>
<link href="https://hdl.handle.net/1721.1/165723" rel="alternate"/>
<author>
<name>Morey, Karna A</name>
</author>
<author>
<name>Fichera, Bryan T</name>
</author>
<author>
<name>Lv, Baiqing</name>
</author>
<author>
<name>Shen, Zongqi</name>
</author>
<author>
<name>Gedik, Nuh</name>
</author>
<id>https://hdl.handle.net/1721.1/165723</id>
<updated>2026-04-29T04:52:14Z</updated>
<published>2025-04-04T00:00:00Z</published>
<summary type="text">Automated polarization rotation for multi-axis rotational-anisotropy second harmonic generation experiments
Morey, Karna A; Fichera, Bryan T; Lv, Baiqing; Shen, Zongqi; Gedik, Nuh
Rotational anisotropy second harmonic generation (RA-SHG) is a nonlinear optical technique used to probe the symmetry of condensed matter systems. Measuring the dependence of the SHG susceptibility on one or more external parameters, notably strain, field, temperature, or time delay, is an extremely powerful way to probe complex phases of quantum materials. Experimentally, extracting maximal information about the SHG susceptibility tensor requires measurements of S and P polarized input and output combinations, which naturally involves the rotation of the polarizers during data collection. For multi-axis experiments, this has proved challenging since polarization rotation is typically done manually. Automating this process eliminates labor constraints, reduces uncertainty due to low-frequency noise, and expands the type of multi-axis datasets that can be collected; however, it is difficult due to geometrical constraints within the setup. In this work, we design and implement low-cost, high-fidelity automated polarization rotators for use in multi-axis RA-SHG. These polarization rotators utilize an electrical slip ring to transfer power to the rotating RA-SHG optical setup as well as a miniature stepper motor to perform the polarization rotation. We demonstrate this automated system in time-resolved RA-SHG measurements in the non-centrosymmetric semiconductor GaAs. For the multi-axis measurements described above, this automated system permits data averaging over longer periods, vastly expedites data collection, and expands the setup measurement capability. This ultimately opens new frontiers in probing quantum materials using multiple tunable external parameters.
</summary>
<dc:date>2025-04-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design of a correlation reflectometer radiometer diagnostic and measurements of the electron density–temperature cross-phase angle in the H-mode pedestal with small edge localized modes at ASDEX Upgrade</title>
<link href="https://hdl.handle.net/1721.1/165722" rel="alternate"/>
<author>
<name>Yoo, C</name>
</author>
<author>
<name>Conway, GD</name>
</author>
<author>
<name>Burke, W</name>
</author>
<author>
<name>Cabrera, PA Molina</name>
</author>
<author>
<name>Vanovac, B</name>
</author>
<author>
<name>Bielajew, R</name>
</author>
<author>
<name>Cruz-Zabala, DJ</name>
</author>
<author>
<name>Silva, A</name>
</author>
<author>
<name>White, AE</name>
</author>
<id>https://hdl.handle.net/1721.1/165722</id>
<updated>2026-04-29T04:53:16Z</updated>
<published>2025-03-04T00:00:00Z</published>
<summary type="text">Design of a correlation reflectometer radiometer diagnostic and measurements of the electron density–temperature cross-phase angle in the H-mode pedestal with small edge localized modes at ASDEX Upgrade
Yoo, C; Conway, GD; Burke, W; Cabrera, PA Molina; Vanovac, B; Bielajew, R; Cruz-Zabala, DJ; Silva, A; White, AE
This work presents the hardware design and first results from a newly commissioned correlation reflectometer radiometer diagnostic that measures the cross-phase angle between electron density and temperature fluctuations in ASDEX Upgrade plasmas. This diagnostic employs cross correlations between signals measured by a tunable, continuous wave, perpendicular incidence, fluctuation reflectometer, and a 24-channel radiometer sharing the same line of sight. Novel measurements in the pedestal of a helium H-mode plasma with small edge localized modes show changes in the cross-phase angle between the electron density and temperature fluctuations from ∼90° to 120°, suggesting changes in the properties of the turbulence driving transport in the plasma edge.
</summary>
<dc:date>2025-03-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Seismic Anisotropy of Mafic Blueschists: EBSD‐Based Constraints From the Exhumed Rock Record</title>
<link href="https://hdl.handle.net/1721.1/165721" rel="alternate"/>
<author>
<name>Ott, Jason N</name>
</author>
<author>
<name>Condit, Cailey B</name>
</author>
<author>
<name>Schulte‐Pelkum, Vera</name>
</author>
<author>
<name>Bernard, Rachel</name>
</author>
<author>
<name>Pec, Matej</name>
</author>
<id>https://hdl.handle.net/1721.1/165721</id>
<updated>2026-04-29T04:55:04Z</updated>
<published>2024-02-15T00:00:00Z</published>
<summary type="text">Seismic Anisotropy of Mafic Blueschists: EBSD‐Based Constraints From the Exhumed Rock Record
Ott, Jason N; Condit, Cailey B; Schulte‐Pelkum, Vera; Bernard, Rachel; Pec, Matej
Seismic anisotropy constitutes a useful tool for imaging the structure along the plate interface in subduction zones, but the seismic properties of mafic blueschists, a common rock type in subduction zones, remain poorly constrained. We applied the technique of electron backscatter diffraction (EBSD) based petrofabric analysis to calculate the seismic anisotropies of 14 naturally deformed mafic blueschists at dry, ambient conditions. The ductilely deformed blueschists were collected from terranes with inferred peak P‐T conditions applicable to subducting slabs at or near the plate interface in active subduction zones. Epidote blueschists display the greatest &lt;jats:italic&gt;P&lt;/jats:italic&gt; wave anisotropy range (AVp ∼7%–20%), while lawsonite blueschist AVp ranges from ∼2% to 10%. &lt;jats:italic&gt;S&lt;/jats:italic&gt; wave anisotropies generate shear wave splitting delay times up to ∼0.1 s over a thickness of 5 km. AVp magnitude increases with glaucophane abundance (from areal EBSD measurements), decreases with increasing epidote or lawsonite abundance, and is enhanced by glaucophane crystallographic preferred orientation (CPO) strength. Two‐phase rock recipe models provide further evidence of the primary role of glaucophane, epidote, and lawsonite in generating blueschist seismic anisotropy. The symmetry of &lt;jats:italic&gt;P&lt;/jats:italic&gt; wave velocity patterns reflects the deformation‐induced CPO type in glaucophane—an effect previously observed for hornblende on amphibolite &lt;jats:italic&gt;P&lt;/jats:italic&gt; wave anisotropy. The distinctive seismic properties that distinguish blueschist from other subduction zone rock types and the strong correlation between anisotropy magnitude/symmetry and glaucophane CPO suggest that seismic anisotropy may be a useful tool in mapping the extent and deformation of blueschists along the interface, and the blueschist‐eclogite transition in active subduction zones.
</summary>
<dc:date>2024-02-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>A compact, asymmetric probe, planar transient grating spectroscopy system</title>
<link href="https://hdl.handle.net/1721.1/165720" rel="alternate"/>
<author>
<name>Rajagopal, J</name>
</author>
<author>
<name>Wylie, APC</name>
</author>
<author>
<name>Dacus, B</name>
</author>
<author>
<name>St. Julian, T</name>
</author>
<author>
<name>Short, MP</name>
</author>
<id>https://hdl.handle.net/1721.1/165720</id>
<updated>2026-04-29T04:52:07Z</updated>
<published>2025-03-03T00:00:00Z</published>
<summary type="text">A compact, asymmetric probe, planar transient grating spectroscopy system
Rajagopal, J; Wylie, APC; Dacus, B; St. Julian, T; Short, MP
Transient grating spectroscopy (TGS) is a rapid and non-destructive technique for measuring thermal, acoustic, and elastic properties of solid materials with a multitude of uses across many areas of materials research. Current TGS systems require optics tables and cumbersome amounts of space for an entire setup, restricting TGS to being a lab-based method. This paper presents a new design for TGS systems that rotates the probe laser beams around the axis of the pump beam, allowing for an asymmetric probe, planar, optically 2D setup. This, in turn, allows the setup to be significantly simplified, which enables the setup presented in this paper to be roughly nine times smaller in volume than contemporary setups while being much easier to build, align, and operate. Part of the size reduction was enabled by a mono-homodyne system and the removal of the chopper. This system was benchmarked against an existing TGS system using a single-crystal tungsten sample. This showed that it can produce the same surface acoustic wave frequency data as the existing system. This design enables TGS to be more widely adopted for use in more varied and compact environments because of its smaller size and simplicity.
</summary>
<dc:date>2025-03-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Basal Mantle Flow Over LLSVPs Explains Differences in Pacific and Indo‐Atlantic Hotspot Motions</title>
<link href="https://hdl.handle.net/1721.1/165719" rel="alternate"/>
<author>
<name>Bellas‐Manley, A</name>
</author>
<author>
<name>Royden, L</name>
</author>
<id>https://hdl.handle.net/1721.1/165719</id>
<updated>2026-04-29T04:53:07Z</updated>
<published>2024-01-01T00:00:00Z</published>
<summary type="text">Basal Mantle Flow Over LLSVPs Explains Differences in Pacific and Indo‐Atlantic Hotspot Motions
Bellas‐Manley, A; Royden, L
Surface hotspot motions are approximately a factor of two faster in the Pacific than the Indo‐Atlantic, and the Indo‐Atlantic large low shear velocity province (LLSVP) appears to be significantly taller than the Pacific LLSVP. Hypothesizing that surface hotspot motions are correlated with the motion of plume sources on the upper surface of chemically distinct, intrinsically dense LLSVPs, we use 3D spherical mantle convection models to compute the velocity of plume sources and compare with observed surface hotspot motions. No contrast in the mean speed of Pacific and Indo‐Atlantic hotspots is predicted if the LLSVPs are treated as purely thermal anomalies and plume sources move laterally across the core‐mantle boundary. However, when LLSVP topography is included in the model, the predicted hotspot speeds are, on average, faster in the Pacific than the Indo‐Atlantic, even when modest topography is assigned to both LLSVPs (e.g., 100–300 km). The difference in mean hotspot speed increases to a factor of two for larger and laterally variable LLSVP topography estimated from seismic tomographic model S40RTS (up to 1,100–1,500 km for the Indo‐Atlantic region vs. 700–1,400 km for the Pacific region) and our results also broadly reproduce the convergence of Pacific hotspots toward the center of the Pacific LLSVP. These largescale features of global hotspot motions are only reproduced when ambient mantle material flows over large, relatively stable topographical features, suggesting that LLSVPs are chemically distinct and intrinsically dense relative to ambient mantle material.
</summary>
<dc:date>2024-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Pompeiian ‘Blue Room’: in situ detection and economic estimation of Egyptian blue pigment in an ancient domestic sacrarium</title>
<link href="https://hdl.handle.net/1721.1/165718" rel="alternate"/>
<author>
<name>Quraishi, Mishael A</name>
</author>
<author>
<name>Nicola, Marco</name>
</author>
<author>
<name>Weaver, James C</name>
</author>
<author>
<name>Grifa, Celestino</name>
</author>
<author>
<name>Amoretti, Valeria</name>
</author>
<author>
<name>Russo, Antonino</name>
</author>
<author>
<name>Zuchtriegel, Gabriel</name>
</author>
<author>
<name>Tarkanian, Michael J</name>
</author>
<author>
<name>Masic, Admir</name>
</author>
<id>https://hdl.handle.net/1721.1/165718</id>
<updated>2026-04-29T04:52:37Z</updated>
<published>2026-03-03T00:00:00Z</published>
<summary type="text">The Pompeiian ‘Blue Room’: in situ detection and economic estimation of Egyptian blue pigment in an ancient domestic sacrarium
Quraishi, Mishael A; Nicola, Marco; Weaver, James C; Grifa, Celestino; Amoretti, Valeria; Russo, Antonino; Zuchtriegel, Gabriel; Tarkanian, Michael J; Masic, Admir
Egyptian blue (EB) was a prized, intense blue pigment in antiquity, its color commonly associated with wealth, status, and divinity. While frequently used in small quantities for decorative enhancements, Pompeii’s newly excavated “Blue Room”, a shrine in Regio IX Insula 10, is remarkable in that the entire room is covered with this historically famous pigment. Using a combination of visible (white light)-induced luminescence, SEM-EDS, and Raman spectroscopy, we were able to spatially map the large-scale distribution of EB in situ, identify the method of application, and calculate the total quantity of EB used. We estimate that between 2.7 and 4.9 kg of EB was applied in the fresco technique, corresponding to a total cost of between 93 and 168 denarii. These findings demonstrate how modern multi-scale characterization tools can be employed to provide valuable insights into material investment, artistic practice, and social status in an ancient Roman domestic context.
</summary>
<dc:date>2026-03-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Along‐Strike Segmentation of Seismic Tremor and Its Relationship With the Hydraulic Structure of the Subduction Fault Zone</title>
<link href="https://hdl.handle.net/1721.1/165717" rel="alternate"/>
<author>
<name>Farge, Gaspard</name>
</author>
<author>
<name>Jaupart, Claude</name>
</author>
<author>
<name>Frank, William B</name>
</author>
<author>
<name>Shapiro, Nikolai M</name>
</author>
<id>https://hdl.handle.net/1721.1/165717</id>
<updated>2026-04-29T04:49:11Z</updated>
<published>2023-11-28T00:00:00Z</published>
<summary type="text">Along‐Strike Segmentation of Seismic Tremor and Its Relationship With the Hydraulic Structure of the Subduction Fault Zone
Farge, Gaspard; Jaupart, Claude; Frank, William B; Shapiro, Nikolai M
Along the strike of subduction zones, tectonic tremor episodicity is segmented on a geologic scale. Here, we study how this segmentation reflects large‐scale variations of the structure and conditions of the fault interface where tremor is generated. We try to understand which properties of the hydraulic system of the fault allow elementary tremor sources to synchronize, leading to the emergence of long‐period, large‐scale episodic activity. We model tremor sources as being associated with rapid openings of low‐permeability valves in the fault zone, which channels the upward flow of metamorphic fluids. Valve openings cause pressure transients that allow interaction between sources. In such a system, tremor activity is thus controlled by unsteady fluid circulation. Using numerical simulations of fluid flow, we explore the impact of valve spatial distribution and fluid flux on the emergence of large‐scale patterns of tremor activity. We show that when valves are densely distributed and submitted to near‐critical input flux, they synchronize and generate more episodic activity. Based on our model, the most periodic and spatially coherent tremor bursts should thus be emitted from segments densely populated with valves, and therefore of lower permeability than less synchronized segments. The collective activity of their valve population is responsible for fluid‐pressure cycling at the subduction scale. In the tremor zone of Shikoku, Japan, the most temporally clustered segment coincides with a downgoing seamount chain, suggesting that the segmentation of the fault zone permeability, and hence of tremor activity, could be inherited from the topography of the subducting oceanic plate.
</summary>
<dc:date>2023-11-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Systematic perturbation of cultures of K. phaffii by carbon co-feeding show gene signatures associated with production of recombinant proteins</title>
<link href="https://hdl.handle.net/1721.1/165716" rel="alternate"/>
<author>
<name>Acharya, Raghav</name>
</author>
<author>
<name>Hinckley, Joshua</name>
</author>
<author>
<name>Barry, Rachel</name>
</author>
<author>
<name>Cha, Eugenie</name>
</author>
<author>
<name>Narayanan, Harini</name>
</author>
<author>
<name>Sunday, Brittney C</name>
</author>
<author>
<name>Ford, Hayley</name>
</author>
<author>
<name>Whittaker, Charles A</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<id>https://hdl.handle.net/1721.1/165716</id>
<updated>2026-04-29T04:55:09Z</updated>
<published>2026-02-04T00:00:00Z</published>
<summary type="text">Systematic perturbation of cultures of K. phaffii by carbon co-feeding show gene signatures associated with production of recombinant proteins
Acharya, Raghav; Hinckley, Joshua; Barry, Rachel; Cha, Eugenie; Narayanan, Harini; Sunday, Brittney C; Ford, Hayley; Whittaker, Charles A; Love, J Christopher
Background&#13;
Demand for recombinant proteins is rapidly growing, driven by their use as biotherapeutics, vaccine components, industrial enzymes, and food ingredients. The growing market requires novel strategies for increasing protein production in cellular hosts. Systems-level frameworks have been used to improve production, but have had difficulty relating complex cellular pathways with protein expression. Here, we demonstrate a method for mapping relationships between gene expression signatures and carbon source-related phenotypes related to recombinant protein production.&#13;
&#13;
Results&#13;
Our approach induces systematic perturbations in cultures of K. phaffii using varied co-feeds of carbon sources. The different carbon sources significantly impacted cell growth, specific productivity, and transcriptional states. With these data, we identified metagenes for both immunoglobulin G1 monoclonal antibody (IgG1) and Variable domain on a heavy chain (VHH) antibody that explained significant transcriptomic variance. These metagenes strongly associated with two phenotypes: production of recombinant protein-to-biomass ratio, and response to methanol induction. We used these results to identify and knockout 31 novel gene targets for which expression inversely correlated with productivity. Nine of these genes improved productivity of IgG1 by up to 3x and ten genes increased productivity of VHH by up to 1.7x. Many of these genes are involved in the modulation and progression of the cell cycle but interestingly, disruption had little to no impact on cell growth.&#13;
&#13;
Conclusion&#13;
This study establishes a framework for relating gene signatures to complex cellular phenotypes, providing a robust methodology for assessing production processes and identifying new targets for cellular engineering. While the identified specific metagenes depend on the complexity and structure of the recombinant protein produced, this framework is extensible across diverse proteins and potentially other host organisms. These signatures may serve as scale-independent, cellular-level metrics for traits like efficiency of production of recombinant proteins, facilitating the translation of findings across different scales and cultivation modes. Furthermore, this framework enables the identification of novel targets for genomic modifications that can improve strain performance, offering a predictive tool for the rational design of high-performing microbial cell factories.
</summary>
<dc:date>2026-02-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Taurine intake ameliorates lactic acidosis and hyperferritinemia occurring after mRNA SARS-CoV-2 vaccination in a patient with β-thalassemia trait: a case report and review of literature</title>
<link href="https://hdl.handle.net/1721.1/165715" rel="alternate"/>
<author>
<name>Kyriakopoulos, Anthony M.</name>
</author>
<author>
<name>McCullough, Peter A.</name>
</author>
<author>
<name>Seneff, Stephanie</name>
</author>
<id>https://hdl.handle.net/1721.1/165715</id>
<updated>2026-04-29T04:49:32Z</updated>
<published>2026-01-28T00:00:00Z</published>
<summary type="text">Taurine intake ameliorates lactic acidosis and hyperferritinemia occurring after mRNA SARS-CoV-2 vaccination in a patient with β-thalassemia trait: a case report and review of literature
Kyriakopoulos, Anthony M.; McCullough, Peter A.; Seneff, Stephanie
Background&#13;
Taurine is a powerful antioxidant necessary for mitochondrial function. Lactic acidosis is a complication encountered in the condition mitochondrial myopathy, encephalopathy, lactic acidosis and stroke-like episodes (MELAS), which can be successfully treated with supplemental taurine. Furthermore, taurine regulates the production of iron-dependent proteins such as ferritin that can act as chelating agents to sequester labile iron.&#13;
&#13;
Case presentation&#13;
A 38-year-old Greek male with a β-zero thalassemia trait developed multiple severe symptoms soon after his first and only mRNA (Pfizer) SARS-CoV-2 vaccination that included hematological stress to be a candidate for blood transfusion. Amongst the hematological readings, the patient had lactate levels &gt; 4 mmol/ml, indicating lactic acidosis, and ferritin levels &gt; 820 ng/ml, representing hyperferritinemia. Moreover, the patient has organic acid and plasma metabolite levels in the urine that are indicative of mitochondrial dysfunction. Regular taurine intake (500 mg/day) for years helped the patient control lactate and ferritin levels and avoid more serious clinical decompensation.&#13;
&#13;
Conclusion&#13;
Regular taurine intake helps to avoid lactic acidosis and reverse hyperferritinemia after mRNA SARS-CoV-2 vaccination in a patient with β-zero thalassemia trait with no obvious genetic trait linked to mitochondrial myopathy, encephalopathy, lactic acidosis and stroke-like episodes. Taurine seemed to be protective for mitochondria.
</summary>
<dc:date>2026-01-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Synonymous codon usage defines functional gene families</title>
<link href="https://hdl.handle.net/1721.1/165714" rel="alternate"/>
<author>
<name>Ghanegolmohammadi, Farzan</name>
</author>
<author>
<name>Ohnuki, Shinsuke</name>
</author>
<author>
<name>Byrne, Shane</name>
</author>
<author>
<name>Raman, Rahul</name>
</author>
<author>
<name>Begley, Thomas J</name>
</author>
<author>
<name>Dedon, Peter C</name>
</author>
<id>https://hdl.handle.net/1721.1/165714</id>
<updated>2026-04-29T04:50:36Z</updated>
<published>2026-01-27T00:00:00Z</published>
<summary type="text">Synonymous codon usage defines functional gene families
Ghanegolmohammadi, Farzan; Ohnuki, Shinsuke; Byrne, Shane; Raman, Rahul; Begley, Thomas J; Dedon, Peter C
The degeneracy of the genetic code is increasingly recognized for roles in regulating translation rate, protein folding, and cell response. However, the functional genomics of codon usage patterns remains poorly defined. We previously showed that prokaryotic and eukaryotic cells respond to individual stresses by uniquely reprogramming the tRNA pool and the dozens of tRNA modifications comprising the tRNA epitranscriptome to cause selective translation of mRNAs from codon-biased stress response genes. Here, we tested the hypothesis that functional gene families have distinct values of codon bias in the Saccharomyces cerevisiae genome by modeling isoacceptor codon distributions using a new approach—analysis of synonymous codon signatures (ASCS).
</summary>
<dc:date>2026-01-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Protocol for development of a reporting guideline (TRIPOD-Code) for code repositories associated with diagnostic and prognostic prediction model studies</title>
<link href="https://hdl.handle.net/1721.1/165713" rel="alternate"/>
<author>
<name>Pollard, Tom</name>
</author>
<author>
<name>Sounack, Thomas</name>
</author>
<author>
<name>Gao, Catherine A</name>
</author>
<author>
<name>Celi, Leo Anthony</name>
</author>
<author>
<name>Lindvall, Charlotta</name>
</author>
<author>
<name>Lee, Hyeonhoon</name>
</author>
<author>
<name>Lee, Hyung-Chul</name>
</author>
<author>
<name>Moons, Karel GM</name>
</author>
<author>
<name>Collins, Gary S</name>
</author>
<id>https://hdl.handle.net/1721.1/165713</id>
<updated>2026-04-29T04:53:32Z</updated>
<published>2026-02-10T00:00:00Z</published>
<summary type="text">Protocol for development of a reporting guideline (TRIPOD-Code) for code repositories associated with diagnostic and prognostic prediction model studies
Pollard, Tom; Sounack, Thomas; Gao, Catherine A; Celi, Leo Anthony; Lindvall, Charlotta; Lee, Hyeonhoon; Lee, Hyung-Chul; Moons, Karel GM; Collins, Gary S
The Transparent Reporting of a multivariable prediction model of Individual Prognosis Or Diagnosis (TRIPOD) statement was published to improve the reporting and critical appraisal of prediction model studies for diagnosis and prognosis. This paper describes the processes and methods that will be used to develop an extension to the TRIPOD statement (TRIPOD-Code) for the management of code associated with prediction model studies. TRIPOD-Code focuses specifically on the transparent reporting of analytical code used in prediction model studies, including code for data preprocessing, model development, and model evaluation.
</summary>
<dc:date>2026-02-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>SubMIT: A Physics Analysis Facility at MIT</title>
<link href="https://hdl.handle.net/1721.1/165712" rel="alternate"/>
<author>
<name>Acosta, P.</name>
</author>
<author>
<name>Bendavid, J.</name>
</author>
<author>
<name>D’Alfonso, M.</name>
</author>
<author>
<name>Eysermans, J.</name>
</author>
<author>
<name>Freer, C.</name>
</author>
<author>
<name>Goncharov, M.</name>
</author>
<author>
<name>Heine, M.</name>
</author>
<author>
<name>Lavezzo, L.</name>
</author>
<author>
<name>Newman, D.</name>
</author>
<author>
<name>Moore, M.</name>
</author>
<author>
<name>Paus, C.</name>
</author>
<author>
<name>Shen, X.</name>
</author>
<author>
<name>Walter, D.</name>
</author>
<author>
<name>Wang, Z.</name>
</author>
<id>https://hdl.handle.net/1721.1/165712</id>
<updated>2026-04-29T04:50:25Z</updated>
<published>2026-02-11T00:00:00Z</published>
<summary type="text">SubMIT: A Physics Analysis Facility at MIT
Acosta, P.; Bendavid, J.; D’Alfonso, M.; Eysermans, J.; Freer, C.; Goncharov, M.; Heine, M.; Lavezzo, L.; Newman, D.; Moore, M.; Paus, C.; Shen, X.; Walter, D.; Wang, Z.
The recently completed SubMIT platform is a small set of servers that provide interactive access to substantial data samples at high speeds, enabling sophisticated data analyses with very fast turnaround times. Additionally, it seamlessly integrates massive processing resources for large-scale tasks by connecting to a set of powerful batch processing systems. It serves as an ideal prototype for an Analysis Facility tailored to meet the demanding data and computational requirements anticipated during the High-Luminosity phase of the Large Hadron Collider. The key features that make this facility so powerful include highly optimized data access with a minimum of 100 Gbps networking per server, a large managed NVMe storage system, and a substantial spinning-disk Ceph file system. The platform integrates a diverse set of high multicore CPU machines for tasks benefiting from the multithreading and GPU resources for example for neural network training. SubMIT also provides and supports a flexible environment for users to manage their own software needs for example by using containers. This article describes the facility, its users, and a few complementary, generic and real-life analyses that are used to benchmark its various capabilities.
</summary>
<dc:date>2026-02-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Geophysical applications to geothermal energy — Introduction</title>
<link href="https://hdl.handle.net/1721.1/165711" rel="alternate"/>
<author>
<name>Gasperikova, Erika</name>
</author>
<author>
<name>Fehler, Michael</name>
</author>
<author>
<name>Asanuma, Hiroshi</name>
</author>
<author>
<name>Trainor-Guitton, Whitney</name>
</author>
<author>
<name>Tezkan, Bülent</name>
</author>
<author>
<name>Bertrand, Ted</name>
</author>
<id>https://hdl.handle.net/1721.1/165711</id>
<updated>2026-04-29T04:51:19Z</updated>
<published>2023-09-04T00:00:00Z</published>
<summary type="text">Geophysical applications to geothermal energy — Introduction
Gasperikova, Erika; Fehler, Michael; Asanuma, Hiroshi; Trainor-Guitton, Whitney; Tezkan, Bülent; Bertrand, Ted
Geothermal energy is a renewable resource that has the potential to provide much-needed energy in many regions around the globe. Electric power generation from hydrothermal and geopressured geothermal systems has been successful worldwide for several decades. Direct use of shallow geothermal energy can address present needs for heating and cooling of buildings or hot water generation. Other potentially much larger resources, such as permeable strata, magmatic, and enhanced geothermal systems (EGS), need to be better understood and currently need help producing energy on an economically attractive scale.
</summary>
<dc:date>2023-09-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reply to the Discussion</title>
<link href="https://hdl.handle.net/1721.1/165710" rel="alternate"/>
<author>
<name>Alkhimenkov, Yury</name>
</author>
<id>https://hdl.handle.net/1721.1/165710</id>
<updated>2026-04-29T04:53:12Z</updated>
<published>2024-01-25T00:00:00Z</published>
<summary type="text">Reply to the Discussion
Alkhimenkov, Yury
Gassmann’s equations have been known for several decades and are widely used in geophysics. These equations are treated as exact if all the assumptions used in their derivation are fulfilled. However, a recent theoretical study claimed that Gassmann’s equations contain an error. Shortly after that, a 3D numerical calculation was performed on a simple pore geometry that verifies the validity of Gassmann’s equations. This pore geometry was simpler than those in real rocks but arbitrary. Furthermore, the pore geometry that was used did not contain any special features (among all possible geometries) that were tailored to make it consistent with Gassmann’s equations. In other recent studies, I also performed numerical calculations on several other more complex pore geometries that supported the validity of Gassmann’s equations. To further support the validity of these equations, I provide here one more convergence study using a more realistic geometry of the pore space. Given that there are several studies that rederive Gassmann’s equations using different methods and numerical studies that verify them for different pore geometries, it can be concluded that Gassmann’s equations can be used in geophysics without concern if their assumptions are fulfilled. MATLAB routines to reproduce the presented results are provided.
</summary>
<dc:date>2024-01-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>A simple and accurate model for attenuation and dispersion caused by squirt flow in isotropic porous rocks</title>
<link href="https://hdl.handle.net/1721.1/165709" rel="alternate"/>
<author>
<name>Alkhimenkov, Yury</name>
</author>
<author>
<name>Quintal, Beatriz</name>
</author>
<id>https://hdl.handle.net/1721.1/165709</id>
<updated>2026-04-29T04:51:08Z</updated>
<published>2023-12-04T00:00:00Z</published>
<summary type="text">A simple and accurate model for attenuation and dispersion caused by squirt flow in isotropic porous rocks
Alkhimenkov, Yury; Quintal, Beatriz
Seismic waves propagating in fluid-saturated porous rocks exhibit attenuation and velocity dispersion in a broad range of frequencies. At sonic and ultrasonic frequencies, the attenuation is predominantly caused by fluid flow in cracks and grain contacts, so-called squirt flow. This physical mechanism for attenuation also may be relevant at seismic frequencies. We develop a simple and accurate analytical model for attenuation and dispersion caused by squirt flow in isotropic porous rocks. The input material properties for a specific rock model can be directly measured in a laboratory or calculated using analytical and numerical approaches. The results from our squirt flow model are compared with inherently accurate 3D numerical solutions for the same pore geometries. The analytical and numerical results are in good agreement. Furthermore, we observe that our analytical model is more accurate than the currently available analytical solution for squirt flow in isotropic porous rocks. MATLAB routines to reproduce the presented results are made available.
</summary>
<dc:date>2023-12-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>HDF5eis: A storage and input/output solution for big multidimensional time series data from environmental sensors</title>
<link href="https://hdl.handle.net/1721.1/165708" rel="alternate"/>
<author>
<name>White, Malcolm CA</name>
</author>
<author>
<name>Zhang, Zhendong</name>
</author>
<author>
<name>Bai, Tong</name>
</author>
<author>
<name>Qiu, Hongrui</name>
</author>
<author>
<name>Chang, Hilary</name>
</author>
<author>
<name>Nakata, Nori</name>
</author>
<id>https://hdl.handle.net/1721.1/165708</id>
<updated>2026-04-29T04:51:06Z</updated>
<published>2023-04-12T00:00:00Z</published>
<summary type="text">HDF5eis: A storage and input/output solution for big multidimensional time series data from environmental sensors
White, Malcolm CA; Zhang, Zhendong; Bai, Tong; Qiu, Hongrui; Chang, Hilary; Nakata, Nori
Modern high-performance computing (HPC) tasks overwhelm conventional geophysical data formats. We describe a new data schema called HDF5eis (read H-D-F-size) for handling big multidimensional time series data from environmental sensors in HPC applications and implement a freely available Python application programming interface (API) for building and processing HDF5eis files. HDF5eis augments the popular Hierarchical Data Format 5 with a minimal set of additional conventions that facilitate fast and flexible data input and output protocols for regularly sampled (in time) data with any number of dimensions. HDF5eis supports arbitrary ancillary data (e.g., metadata) storage in columnar format or as UTF-8 encoded byte streams alongside time series data. Our HDF5eis API enables simple and efficient access to big data sets distributed across a potentially large number of small heterogeneous files through a single point of access. HDF5eis outperforms conventional seismic data formats by up to two orders of magnitude in terms of random read access times. We contribute HDF5eis as an operational tool and an experimental draft proposal that will help establish the next generation of data standards in the earth sciences.
</summary>
<dc:date>2023-04-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>RES.HST-001 MIT Little Devices Lab, Fall 2021</title>
<link href="https://hdl.handle.net/1721.1/165707" rel="alternate"/>
<author>
<name>Gomez-Marquez, Jose</name>
</author>
<author>
<name>Young, Anna</name>
</author>
<id>https://hdl.handle.net/1721.1/165707</id>
<updated>2026-04-28T17:35:58Z</updated>
<published>2021-01-01T00:00:00Z</published>
<summary type="text">RES.HST-001 MIT Little Devices Lab, Fall 2021
Gomez-Marquez, Jose; Young, Anna
The MIT Little Devices Lab collaborates with healthcare professionals in developing countries to create affordable health and medical technologies. A large number of these healthcare professionals are nurses, and have been described as “stealth innovators,” “NurseMakers,” and “MacGyver Nurses.” (Rice, S. "Nurses Devise Their Own Innovations." Modern Healthcare, 17 Oct., 2015).&#13;
&#13;
The Little Devices Lab helps support these inventors by sending them kits with the modular parts and materials to invent and build their own customized, cost-effective medical devices. They can then solve challenges specific to their patients and work environments, for a range of applications from diagnostics to microfluidics to drug delivery.&#13;
&#13;
Similar to how breadboards enabled people to more easily build their own electronics, one of the lab’s projects involved creating a biochemical breadboard with plug-and-play sets of blocks for building paper analytical devices, which healthcare workers can use to make diagnostic tests that meet their needs.&#13;
&#13;
On the Little Devices Lab’s site, users will find more details about the lab's ongoing projects and research, video presentations about its work, and several of its members' publications.
</summary>
<dc:date>2021-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ombudsman Dilemmas: Confidentiality, Neutrality, Testifying, Record-Keeping</title>
<link href="https://hdl.handle.net/1721.1/165706" rel="alternate"/>
<author>
<name>Rowe, Mary P.</name>
</author>
<author>
<name>Simon, Mary G.</name>
</author>
<author>
<name>Bensinger, Ann</name>
</author>
<id>https://hdl.handle.net/1721.1/165706</id>
<updated>2026-04-28T03:01:03Z</updated>
<published>1993-01-01T00:00:00Z</published>
<summary type="text">Ombudsman Dilemmas: Confidentiality, Neutrality, Testifying, Record-Keeping
Rowe, Mary P.; Simon, Mary G.; Bensinger, Ann
Note: This article was initially published in the Proceedings of the Annual Conference of the Society of Professionals in Dispute Resolution (SPIDR) 1989, 282-293. SPIDR, 1990.
</summary>
<dc:date>1993-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Corporate Ombudsmen: Functions, Caseloads, Approaches and Outcomes</title>
<link href="https://hdl.handle.net/1721.1/165705" rel="alternate"/>
<author>
<name>Ziegenfuss, James T. Jr.</name>
</author>
<author>
<name>Rowe, Mary</name>
</author>
<author>
<name>Munzenrider, Robert F.</name>
</author>
<id>https://hdl.handle.net/1721.1/165705</id>
<updated>2026-04-28T03:00:57Z</updated>
<published>1993-01-01T00:00:00Z</published>
<summary type="text">Corporate Ombudsmen: Functions, Caseloads, Approaches and Outcomes
Ziegenfuss, James T. Jr.; Rowe, Mary; Munzenrider, Robert F.
Note: Includes results of a 1989 survey of 55 corporate ombudsmen.
</summary>
<dc:date>1993-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Micro-inequities in Medicine</title>
<link href="https://hdl.handle.net/1721.1/165704" rel="alternate"/>
<author>
<name>Silver, Julie K.</name>
</author>
<author>
<name>Rowe, Mary</name>
</author>
<author>
<name>Sinha, Michael S.</name>
</author>
<author>
<name>Molinares, Diana M.</name>
</author>
<author>
<name>Spector, Nancy D.</name>
</author>
<author>
<name>Mukherjee, Debjani</name>
</author>
<id>https://hdl.handle.net/1721.1/165704</id>
<updated>2026-04-28T03:01:04Z</updated>
<published>2018-10-01T00:00:00Z</published>
<summary type="text">Micro-inequities in Medicine
Silver, Julie K.; Rowe, Mary; Sinha, Michael S.; Molinares, Diana M.; Spector, Nancy D.; Mukherjee, Debjani
</summary>
<dc:date>2018-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shallow Slow Slip Events in the Imperial Valley With Along‐Strike Propagation</title>
<link href="https://hdl.handle.net/1721.1/165703" rel="alternate"/>
<author>
<name>Materna, Kathryn</name>
</author>
<author>
<name>Bürgmann, Roland</name>
</author>
<author>
<name>Lindsay, Danielle</name>
</author>
<author>
<name>Bilham, Roger</name>
</author>
<author>
<name>Herring, Thomas</name>
</author>
<author>
<name>Crowell, Brendan</name>
</author>
<author>
<name>Szeliga, Walter</name>
</author>
<id>https://hdl.handle.net/1721.1/165703</id>
<updated>2026-04-28T03:19:48Z</updated>
<published>2024-06-19T00:00:00Z</published>
<summary type="text">Shallow Slow Slip Events in the Imperial Valley With Along‐Strike Propagation
Materna, Kathryn; Bürgmann, Roland; Lindsay, Danielle; Bilham, Roger; Herring, Thomas; Crowell, Brendan; Szeliga, Walter
Shallow creep events provide opportunities to understand the mechanical properties and behavior of faults. However, due to physical limitations observing creep events, the precise spatio‐temporal evolution of slip during creep events is not well understood. In 2023, the Superstition Hills and Imperial faults in California each experienced centimeter‐scale slip events that were captured in unprecedented detail by satellite radar, sub‐daily Global Navigation Satellite Systems, and creepmeters. In both cases, the slip propagated along the fault over 2–3 weeks. The Superstition Hills event propagated bilaterally away from its initiation point at average velocities of ∼9 km/day, but propagation velocities were locally much higher. The ruptures were consistent with slip from tens of meters to ∼2 km depths. These slowly propagating events reveal that the shallow crust of the Imperial Valley does not obey purely velocity‐strengthening or velocity‐weakening rate‐and‐state friction, but instead requires the consideration of fault heterogeneity or fault‐frictional behaviors such as dilatant strengthening.
Article relates to: Vavra, E. J., Fialko, Y., Rockwell, T., Bilham, R., Štěpančíková, P., Stemberk, J., et al. (2024). Characteristic slow-slip events on the Superstition Hills Fault, Southern California. Geophysical Research Letters, 51, e2023GL107244. https://doi.org/10.1029/2023GL107244
</summary>
<dc:date>2024-06-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Flow and Turbulence Due To Wood Contribute to Declogging of Gravel Bed</title>
<link href="https://hdl.handle.net/1721.1/165702" rel="alternate"/>
<author>
<name>Schalko, I</name>
</author>
<author>
<name>Ponce, M</name>
</author>
<author>
<name>Lassar, S</name>
</author>
<author>
<name>Schwindt, S</name>
</author>
<author>
<name>Haun, S</name>
</author>
<author>
<name>Nepf, H</name>
</author>
<id>https://hdl.handle.net/1721.1/165702</id>
<updated>2026-04-28T03:19:56Z</updated>
<published>2024-01-21T00:00:00Z</published>
<summary type="text">Flow and Turbulence Due To Wood Contribute to Declogging of Gravel Bed
Schalko, I; Ponce, M; Lassar, S; Schwindt, S; Haun, S; Nepf, H
The placement of wood in rivers is a common restoration method used to locally affect hydraulic and morphologic conditions to create habitat. Laboratory experiments demonstrated that wood placements can also promote surface declogging, that is, removal of fine sediment from a gravel bed, thereby restoring spawning grounds for fish. Logs of different size and submergence level were placed on a gravel bed clogged with fines. Surface declogging was observed in regions of elevated turbulence in the log wake and elevated velocity adjacent to the log. A criteria for declogging was identified based on a modified non‐dimensional Shields parameter combining mean and turbulent velocity at the bed. The footprint of declogged bed scaled with log dimensions. Emergent logs produced a larger declogging footprint compared to submerged logs of the same length, due to their stronger influence on the flow field. Logs were also shown to prevent clogging over similar areas.
</summary>
<dc:date>2024-01-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Response of Tropical Rainfall to Idealized Small‐Scale Thermal and Mechanical Forcing</title>
<link href="https://hdl.handle.net/1721.1/165701" rel="alternate"/>
<author>
<name>Velez‐Pardo, Martin</name>
</author>
<author>
<name>Cronin, Timothy W</name>
</author>
<id>https://hdl.handle.net/1721.1/165701</id>
<updated>2026-04-28T03:19:35Z</updated>
<published>2024-02-24T00:00:00Z</published>
<summary type="text">The Response of Tropical Rainfall to Idealized Small‐Scale Thermal and Mechanical Forcing
Velez‐Pardo, Martin; Cronin, Timothy W
Predicting the spatiotemporal distribution of rainfall remains a key challenge in Tropical Meteorology, partly due to an incomplete understanding of the effects of different environmental factors on atmospheric convection. In this work, we use numerical simulations of tropical ocean domains to study how rainfall responds to imposed localized thermal and mechanical forcings to the atmosphere. We use the Normalized Gross Moist Stability—NGMS—to quantify the net precipitation response associated with a given net atmospheric heating. We find that NGMS values differ considerably for different forcings, but show that the relationship between precipitation and column relative humidity collapses along a universal curve across all of them. We also show that the contributions from mean vertical advection of moist and dry static energy only approximate the NGMS well at scales larger than a couple hundred kilometers, indicating that general horizontal mixing processes are not negligible at smaller scales.
</summary>
<dc:date>2024-02-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Magnetic Field Signatures of Craters on Mars</title>
<link href="https://hdl.handle.net/1721.1/165700" rel="alternate"/>
<author>
<name>Mittelholz, A</name>
</author>
<author>
<name>Steele, SC</name>
</author>
<author>
<name>Fu, RR</name>
</author>
<author>
<name>Johnson, CL</name>
</author>
<author>
<name>Lillis, RJ</name>
</author>
<author>
<name>Stucky de Quay, G</name>
</author>
<id>https://hdl.handle.net/1721.1/165700</id>
<updated>2026-04-28T03:20:35Z</updated>
<published>2024-03-21T00:00:00Z</published>
<summary type="text">Magnetic Field Signatures of Craters on Mars
Mittelholz, A; Steele, SC; Fu, RR; Johnson, CL; Lillis, RJ; Stucky de Quay, G
Craters on Mars are a window into Mars' past and the time they were emplaced. Because the crust is heated and shocked during impact, craters can demagnetize or magnetize the crust depending on the presence or absence of a dynamo field at the time of impact. This concept has been used to constrain dynamo timing. Here, we investigate magnetic anomalies associated with craters larger than 150 km. We find that most of those craters, independent of age, exhibit demagnetization signatures in the form of a central magnetic low. We demonstrate a statistically significant association between such signatures and craters, and hypothesize that the excavation of strongly magnetic crustal material may be an important contribution to the dominance of demagnetized craters. This finding implies that the simple presence or absence of crater demagnetization signatures is not a reliable indicator for the activity of the Martian dynamo during or after crater formation.
</summary>
<dc:date>2024-03-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Anomalous Meltwater From Ice Sheets and Ice Shelves Is a Historical Forcing</title>
<link href="https://hdl.handle.net/1721.1/165699" rel="alternate"/>
<author>
<name>Schmidt, Gavin A</name>
</author>
<author>
<name>Romanou, Anastasia</name>
</author>
<author>
<name>Roach, Lettie A</name>
</author>
<author>
<name>Mankoff, Kenneth D</name>
</author>
<author>
<name>Li, Qian</name>
</author>
<author>
<name>Rye, Craig D</name>
</author>
<author>
<name>Kelley, Maxwell</name>
</author>
<author>
<name>Marshall, John C</name>
</author>
<author>
<name>Busecke, Julius JM</name>
</author>
<id>https://hdl.handle.net/1721.1/165699</id>
<updated>2026-04-28T03:20:59Z</updated>
<published>2023-12-13T00:00:00Z</published>
<summary type="text">Anomalous Meltwater From Ice Sheets and Ice Shelves Is a Historical Forcing
Schmidt, Gavin A; Romanou, Anastasia; Roach, Lettie A; Mankoff, Kenneth D; Li, Qian; Rye, Craig D; Kelley, Maxwell; Marshall, John C; Busecke, Julius JM
Recent mass loss from ice sheets and ice shelves is now persistent and prolonged enough that it impacts downstream oceanographic conditions. To demonstrate this, we use an ensemble of coupled GISS‐E2.1‐G simulations forced with historical estimates of anomalous freshwater, in addition to other climate forcings, from 1990 through 2019. There are detectable differences in zonal‐mean sea surface temperatures (SST) and sea ice in the Southern Ocean, and in regional sea level around Antarctica and in the western North Atlantic. These impacts mostly improve the model's representation of historical changes, including reversing the forced trends in Antarctic sea ice. The changes in SST may have implications for estimates of the SST pattern effect on climate sensitivity and for cloud feedbacks. We conclude that the changes are sufficiently large that model groups should strive to include more accurate estimates of these drivers in all‐forcing historical simulations in future coupled model intercomparisons.
</summary>
<dc:date>2023-12-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>When data systems meet ecosystems: Tensions between AI platforms and vitality in corporate sustainability</title>
<link href="https://hdl.handle.net/1721.1/165698" rel="alternate"/>
<author>
<name>Westerlaken, Michelle</name>
</author>
<author>
<name>Rattay, Sonja</name>
</author>
<id>https://hdl.handle.net/1721.1/165698</id>
<updated>2026-04-28T03:19:01Z</updated>
<published>2026-06-08T00:00:00Z</published>
<summary type="text">When data systems meet ecosystems: Tensions between AI platforms and vitality in corporate sustainability
Westerlaken, Michelle; Rattay, Sonja
Ecosystems are not computers. They are alive, endlessly complex, and&#13;
deeply intriguing. What if the data systems used to better understand living worlds&#13;
could embed this more-than-human vitality? This paper examines ecosystem data&#13;
tools in corporate sustainability, where AI tools have become key mediators in&#13;
sustainable transitions. Drawing on desk research and empirical data with&#13;
biodiversity specialists at 13 large corporations, it identifies four tensions that&#13;
reveal deeper mismatches between computational systems and ecological worlds.&#13;
These arise between demands for certainty and the unstable dynamics of&#13;
ecosystems; between the need for data as neutral evidence and as arguments&#13;
towards managing corporate trade-offs; between LLMs as tools for synthesis and&#13;
the continued necessity of human interpretation; and between functional tool&#13;
aesthetics and the vital attachments needed for regenerative change. From these&#13;
findings, the paper articulates a more-than-human design space aligned with&#13;
ecological dynamics, meaning-making, technosymbiotic relations, and&#13;
transformative corporate change.
DRS 26 Edinburgh, UK 8-12 June 2026
</summary>
<dc:date>2026-06-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Isomer-driven polymerization, depolymerization, and reconstruction</title>
<link href="https://hdl.handle.net/1721.1/165697" rel="alternate"/>
<author>
<name>Wakefield IV, Herbert</name>
</author>
<author>
<name>Fromel, Nicholas J</name>
</author>
<author>
<name>Jiang, Jennifer</name>
</author>
<author>
<name>Kevlishvili, Ilia</name>
</author>
<author>
<name>Yao, Yunxin</name>
</author>
<author>
<name>Craig, Stephen L</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<author>
<name>Klausen, Rebekka S</name>
</author>
<id>https://hdl.handle.net/1721.1/165697</id>
<updated>2026-04-25T03:06:47Z</updated>
<published>2024-01-01T00:00:00Z</published>
<summary type="text">Isomer-driven polymerization, depolymerization, and reconstruction
Wakefield IV, Herbert; Fromel, Nicholas J; Jiang, Jennifer; Kevlishvili, Ilia; Yao, Yunxin; Craig, Stephen L; Kulik, Heather J; Klausen, Rebekka S
We report that differences in ring strain enthalpy between cis and trans isomers of sila-cycloheptene&#13;
provide a driving force for both polymerization and depolymerization via olefin metathesis. A need for&#13;
new methods to reintroduce the low-strain isomer into the plastic economy inspired the development of&#13;
a polymerization based on ring-opening/cross-metathesis step polymerization, which afforded perfect&#13;
sequence control for an alternating copolymer. The chemical principles are a platform for achieving both&#13;
efficient polymerization and depolymerization with high mass recovery in functional polymers.
</summary>
<dc:date>2024-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Designing membranes with specific binding sites for selective ion separations</title>
<link href="https://hdl.handle.net/1721.1/165696" rel="alternate"/>
<author>
<name>Violet, Camille</name>
</author>
<author>
<name>Ball, Akash</name>
</author>
<author>
<name>Heiranian, Mohammad</name>
</author>
<author>
<name>Villalobos, Luis Francisco</name>
</author>
<author>
<name>Zhang, Junwei</name>
</author>
<author>
<name>Uralcan, Betul</name>
</author>
<author>
<name>Kulik, Heather</name>
</author>
<author>
<name>Haji-Akbari, Amir</name>
</author>
<author>
<name>Elimelech, Menachem</name>
</author>
<id>https://hdl.handle.net/1721.1/165696</id>
<updated>2026-04-25T03:07:11Z</updated>
<published>2024-08-08T00:00:00Z</published>
<summary type="text">Designing membranes with specific binding sites for selective ion separations
Violet, Camille; Ball, Akash; Heiranian, Mohammad; Villalobos, Luis Francisco; Zhang, Junwei; Uralcan, Betul; Kulik, Heather; Haji-Akbari, Amir; Elimelech, Menachem
A new class of membranes that can separate ions of similar size and charge is highly desired for resource recovery, water reuse and energy storage technologies. These separations require membrane nanochannels with simultaneous ångström-scale confinement and ion-selective binding sites. Conventional membrane material design uses continuous, volume-averaged properties that cannot account for discrete chemical interactions between ions and binding sites. In this Perspective, we present a design framework for ultraselective membranes by describing how to select and incorporate ion-specific binding sites into membrane nanochannels. We begin by discussing how the chemical features of ions, functional groups and solvents impact ion-binding energy. We then describe the role of binding energy in selective ion transport through nanochannels and discuss the critical importance of intersite spacing. Subsequently, we draw inspiration from machine learning methods used for drug discovery and suggest a similar approach to identify functional groups with optimal ion-binding affinity. We conclude by outlining synthetic methods to incorporate ion-specific binding sites into prevalent nanostructured materials such as covalent organic frameworks, metal–organic frameworks, two-dimensional materials and polymers.
</summary>
<dc:date>2024-08-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Machine Learning Prediction of the Experimental Transition Temperature of Fe(II) Spin-Crossover Complexes</title>
<link href="https://hdl.handle.net/1721.1/165695" rel="alternate"/>
<author>
<name>Vennelakanti, Vyshnavi</name>
</author>
<author>
<name>Kilic, Irem B</name>
</author>
<author>
<name>Terrones, Gianmarco G</name>
</author>
<author>
<name>Duan, Chenru</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165695</id>
<updated>2026-04-25T03:05:15Z</updated>
<published>2023-12-27T00:00:00Z</published>
<summary type="text">Machine Learning Prediction of the Experimental Transition Temperature of Fe(II) Spin-Crossover Complexes
Vennelakanti, Vyshnavi; Kilic, Irem B; Terrones, Gianmarco G; Duan, Chenru; Kulik, Heather J
Spin-crossover (SCO) complexes are materials that exhibit changes in the spin state in response to external stimuli, with potential applications in molecular electronics. It is challenging to know a priori how to design ligands to achieve the delicate balance of entropic and enthalpic contributions needed to tailor a transition temperature close to room temperature. We leverage the SCO complexes from the previously curated SCO-95 data set [Vennelakanti et al. J. Chem. Phys. 159, 024120 (2023)] to train three machine learning (ML) models for transition temperature (T1/2) prediction using graph-based revised autocorrelations as features. We perform feature selection using random forest-ranked recursive feature addition (RF-RFA) to identify the features essential to model transferability. Of the ML models considered, the full feature set RF and recursive feature addition RF models perform best, achieving moderate correlation to experimental T1/2 values. We then compare ML T1/2 predictions to those from three previously identified best-performing density functional approximations (DFAs) which accurately predict SCO behavior across SCO-95, finding that the ML models predict T1/2 more accurately than the best-performing DFAs. In addition, we study ML model predictions for a set of 18 SCO complexes for which only estimated T1/2 values are available. Upon excluding outliers from this set, the RF-RFA RF model shows a strong correlation to estimated T1/2 values with a Pearson’s r of 0.82. In contrast, DFA-predicted T1/2 values have large errors and show no correlation to estimated T1/2 values over the same set of complexes. Overall, our study demonstrates slightly superior performance of ML models in comparison with some of the best-performing DFAs, and we expect ML models to improve further as larger data sets of SCO complexes are curated and become available for model training.
</summary>
<dc:date>2023-12-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Computational Investigation of the Role of Metal Center Identity in Cytochrome P450 Enzyme Model Reactivity</title>
<link href="https://hdl.handle.net/1721.1/165694" rel="alternate"/>
<author>
<name>Vennelakanti, Vyshnavi</name>
</author>
<author>
<name>Jeon, Mugyeom</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165694</id>
<updated>2026-04-25T03:04:10Z</updated>
<published>2025-01-21T00:00:00Z</published>
<summary type="text">Computational Investigation of the Role of Metal Center Identity in Cytochrome P450 Enzyme Model Reactivity
Vennelakanti, Vyshnavi; Jeon, Mugyeom; Kulik, Heather J
Mononuclear Fe enzymes such as heme-containing cytochrome P450 enzymes catalyze a variety of C-H activation reactions under ambient conditions, and they represent an attractive platform for engineering reactivity through changes to the native enzyme. Using density functional theory, we study both native Fe and non-native group 8 (Ru, Os) and group 9 (Ir) metal centers in an active site model of P450. We quantify how changing the metal changes spin state preferences throughout the catalytic cycle. Our calculations reveal an intermediate-spin ground state for all Fe intermediates while the heavier metals prefer low-spin ground states across most intermediates in the reaction cycle. We also study the rate-determining hydrogen atom transfer (HAT) step and the subsequent rebound step. We observe comparable HAT barriers for Fe and Ru, a much higher barrier for Os, and the lowest HAT barrier for Ir. Rebound steps are barrierless for all metals, and the rebound intermediate for Fe is most significantly stabilized. Examination of ground spin states of all intermediates in the reaction cycle reveals spin-allowed pathways for the group 8 metals and spin-forbidden energetics for the group 9 Ir with potential two-state reactivity. Our work highlights the differences between the group 8 metals and the group 9 Ir, and it suggests that engineered P450 enzymes with Ru in particular result in improved enzyme reactivity toward C-H hydroxylation.
</summary>
<dc:date>2025-01-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Elastic geometric-mean reverse time migration for source imaging</title>
<link href="https://hdl.handle.net/1721.1/165693" rel="alternate"/>
<author>
<name>Bai, Tong</name>
</author>
<author>
<name>Lyu, Bin</name>
</author>
<author>
<name>Li, Fangyu</name>
</author>
<author>
<name>Williamson, Paul</name>
</author>
<author>
<name>Nakata, Nori</name>
</author>
<id>https://hdl.handle.net/1721.1/165693</id>
<updated>2026-04-25T03:06:53Z</updated>
<published>2022-06-20T00:00:00Z</published>
<summary type="text">Elastic geometric-mean reverse time migration for source imaging
Bai, Tong; Lyu, Bin; Li, Fangyu; Williamson, Paul; Nakata, Nori
Passive source location is a fundamental problem in earthquake seismology and reservoir characterization with fluid injection. It has been shown that geometric-mean reverse time migration (GmRTM) can produce source images with improved resolution and fewer migration artifacts than conventional time-reversal imaging in acoustic media. However, the acoustic assumption often requires data windowing and polarity correction when we apply it to the elastic data, which involves manual efforts and introduces uncertainties. Therefore, we have extended this crosscorrelation-based GmRTM imaging method to elastic media. Back-propagation and Helmholtz decomposition are conducted individually for each receiver wavefield, after which we apply zero-lag crosscorrelations over the decoupled P or/and S wavefields to obtain the corresponding P-, S-, and PS-source images. Considering the influences of random noise, anisotropy, and interferences from multiple sources, we test the proposed elastic GmRTM method on a synthetic example with a layered model and determine its advantages over other imaging conditions (e.g., time-reversal imaging). The method is further validated using another synthetic test based on the elastic Marmousi model and a field-data example from Oklahoma.
</summary>
<dc:date>2022-06-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Receiver grouping strategies for hybrid geometric-mean reverse time migration</title>
<link href="https://hdl.handle.net/1721.1/165692" rel="alternate"/>
<author>
<name>Bai, Tong</name>
</author>
<author>
<name>Lyu, Bin</name>
</author>
<author>
<name>Williamson, Paul</name>
</author>
<author>
<name>Nakata, Nori</name>
</author>
<id>https://hdl.handle.net/1721.1/165692</id>
<updated>2026-04-25T03:06:58Z</updated>
<published>2022-01-21T00:00:00Z</published>
<summary type="text">Receiver grouping strategies for hybrid geometric-mean reverse time migration
Bai, Tong; Lyu, Bin; Williamson, Paul; Nakata, Nori
Geometric-mean reverse time migration (GmRTM), a powerful crosscorrelation-based imaging method, generates higher resolution source images and is more robust to noise compared with conventional time-reversal imaging. The price to pay is the higher computational costs. Alternatively, we can adopt hybrid strategies by dividing the receivers into different groups. Conventional time reversal (i.e., wavefield summation) is performed inside each group, followed by the application of crosscorrelation imaging condition among different groups. Such hybrid strategies can retain the advantages of GmRTM and time reversal and are often more practical than pure GmRTM. Yet, designing appropriate grouping strategy is not trivial. Here, we have developed two grouping strategies (adjacent and scattered) and used synthetic and field-data examples to evaluate their performance with various group numbers. In addition to the spatial resolution of the source image, robustness to random noise is another important assessment criterion, for which we consider two distribution patterns, such as concentrated and scattered, of traces contaminated with strong random noise. We also evaluated their effectiveness to visualize events (in the image domain) that are not completely recorded by all receivers. Our comprehensive tests illustrate the respective advantages of the two grouping strategies.
</summary>
<dc:date>2022-01-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Neuron–Glial Interactions: Implications for Plasticity, Behavior, and Cognition</title>
<link href="https://hdl.handle.net/1721.1/165691" rel="alternate"/>
<author>
<name>Rangel-Gomez, Mauricio</name>
</author>
<author>
<name>Alberini, Cristina M</name>
</author>
<author>
<name>Deneen, Benjamin</name>
</author>
<author>
<name>Drummond, Gabrielle T</name>
</author>
<author>
<name>Manninen, Tiina</name>
</author>
<author>
<name>Sur, Mriganka</name>
</author>
<author>
<name>Vicentic, Aleksandra</name>
</author>
<id>https://hdl.handle.net/1721.1/165691</id>
<updated>2026-04-25T03:04:33Z</updated>
<published>2024-10-02T00:00:00Z</published>
<summary type="text">Neuron–Glial Interactions: Implications for Plasticity, Behavior, and Cognition
Rangel-Gomez, Mauricio; Alberini, Cristina M; Deneen, Benjamin; Drummond, Gabrielle T; Manninen, Tiina; Sur, Mriganka; Vicentic, Aleksandra
The traditional view of glial cells as mere supportive tissue has shifted, due to advances in technology and theoretical conceptualization, to include a diversity of other functions, such as regulation of complex behaviors. Astrocytes, the most abundant glial cells in the central nervous system (CNS), have been shown to modulate synaptic functions through gliotransmitter-mediated neurotransmitter reuptake, influencing neuronal signaling and behavioral functions. Contemporary studies further highlight astrocytes’ involvement in complex cognitive functions. For instance, inhibiting astrocytes in the hippocampus can lead to memory deficits, suggesting their integral role in memory processes. Moreover, astrocytic calcium activity and astrocyte–neuron metabolic coupling have been linked to changes in synaptic strength and learning. Microglia, another type of glial cell, also extend beyond their supportive roles, contributing to learning and memory processes, with microglial reductions impacting these functions in a developmentally dependent manner. Oligodendrocytes, traditionally thought to have limited roles postdevelopment, are now recognized for their activity-dependent modulation of myelination and plasticity, thus influencing behavioral responses. Recent advancements in technology and computational modeling have expanded our understanding of glial functions, particularly how astrocytes influence neuronal circuits and behaviors. This review underscores the importance of glial cells in CNS functions and the need for further research to unravel the complexities of neuron–glia interactions, the impact of these interactions on brain functions, and potential implications for neurological diseases.
</summary>
<dc:date>2024-10-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Active Zone Maturation Controls Presynaptic Output and Release Mode and Is Regulated by Neuronal Activity</title>
<link href="https://hdl.handle.net/1721.1/165690" rel="alternate"/>
<author>
<name>Akbergenova, Yulia</name>
</author>
<author>
<name>Matthias, Jessica</name>
</author>
<author>
<name>Makeyeva, Sofya</name>
</author>
<author>
<name>Littleton, J Troy</name>
</author>
<id>https://hdl.handle.net/1721.1/165690</id>
<updated>2026-04-25T03:06:08Z</updated>
<published>2025-11-26T00:00:00Z</published>
<summary type="text">Active Zone Maturation Controls Presynaptic Output and Release Mode and Is Regulated by Neuronal Activity
Akbergenova, Yulia; Matthias, Jessica; Makeyeva, Sofya; Littleton, J Troy
Synapse formation requires the accumulation of cytomatrix proteins and voltage-gated Ca2+ channels (VGCCs) at presynaptic active zones (AZs). At Drosophila melanogaster larval neuromuscular junctions, a sequential process of AZ maturation is observed, with initial incorporation of early scaffolds followed by arrival of late scaffolds and VGCCs. To examine how AZ maturation regulates presynaptic output, serial imaging of AZ formation and function was performed at time-stamped synapses of male larvae expressing glutamate receptors linked to the photoconvertible protein mMaple. Quantal imaging demonstrated older synapses have higher synaptic efficacy and sustain greater release across development, while immature sites lacking VGCC accumulation supported spontaneous fusion. To examine how activity regulates AZ maturation, the effects of cell autonomous disruptions to neurotransmitter release were analyzed. Decreased synaptic transmission reduced AZ seeding and caused hyperaccumulation of material at existing AZs. Generation of an endogenous photoconvertible version of the AZ scaffold protein BRP revealed neuronal silencing decreased the protein's turnover. Although enlarged AZs are also observed in rab3 mutants, activity reduction acted through an independent mechanism that required postsynaptic glutamate receptor-dependent signaling. Endogenous tagging of the Unc13B early AZ scaffold and the Unc13A late AZ scaffold revealed activity reduction decreased seeding of both early and late scaffolds, in contrast to rab3 mutants. Together, these data indicate AZ maturation regulates presynaptic release mode and output strength, with neuronal activity shaping both AZ number and size across development.
</summary>
<dc:date>2025-11-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evidence for an Active Handoff between Hemispheres during Target Tracking</title>
<link href="https://hdl.handle.net/1721.1/165689" rel="alternate"/>
<author>
<name>Broschard, Matthew B</name>
</author>
<author>
<name>Roy, Jefferson E</name>
</author>
<author>
<name>Brincat, Scott L</name>
</author>
<author>
<name>Mahnke, Meredith K</name>
</author>
<author>
<name>Miller, Earl K</name>
</author>
<id>https://hdl.handle.net/1721.1/165689</id>
<updated>2026-04-25T03:04:48Z</updated>
<published>2025-10-29T00:00:00Z</published>
<summary type="text">Evidence for an Active Handoff between Hemispheres during Target Tracking
Broschard, Matthew B; Roy, Jefferson E; Brincat, Scott L; Mahnke, Meredith K; Miller, Earl K
The brain has somewhat separate cognitive resources for the left and right sides of our visual field. Despite this lateralization, we have a smooth and unified perception of our environment. This raises the question of how the cerebral hemispheres are coordinated to transfer information between them. We recorded neural activity in the lateral prefrontal cortex, bilaterally, as two male nonhuman primates covertly tracked a target that moved from one visual hemifield (i.e., from one hemisphere) to the other. Beta (15–30 Hz) power, gamma (30–80 Hz) power, and spiking information reflected sensory processing of the target. In contrast, alpha (10–15 Hz) power, theta (4–10 Hz) power, and spiking information seemed to reflect an active handoff of attention as target information was transferred between hemispheres. Specifically, alpha power and spiking information ramped up in anticipation of the hemifield cross. Theta power peaked after the cross, signaling its completion. Our results support an active handoff of information between hemispheres. This “handshaking” operation may be critical for minimizing information loss, much like how mobile towers handshake when transferring calls between them.
</summary>
<dc:date>2025-10-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Metal–Organic Framework Stability in Water and Harsh Environments from Data-Driven Models Trained on the Diverse WS24 Data Set</title>
<link href="https://hdl.handle.net/1721.1/165688" rel="alternate"/>
<author>
<name>Terrones, Gianmarco G</name>
</author>
<author>
<name>Huang, Shih-Peng</name>
</author>
<author>
<name>Rivera, Matthew P</name>
</author>
<author>
<name>Yue, Shuwen</name>
</author>
<author>
<name>Hernandez, Alondra</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165688</id>
<updated>2026-04-25T03:05:38Z</updated>
<published>2024-07-10T00:00:00Z</published>
<summary type="text">Metal–Organic Framework Stability in Water and Harsh Environments from Data-Driven Models Trained on the Diverse WS24 Data Set
Terrones, Gianmarco G; Huang, Shih-Peng; Rivera, Matthew P; Yue, Shuwen; Hernandez, Alondra; Kulik, Heather J
Metal-organic frameworks (MOFs) are porous materials with applications in gas separations and catalysis, but a lack of water stability often limits their practical use given the ubiquity of water. Consequently, it is useful to predict whether a MOF is water-stable before investing time and resources into synthesis. Existing heuristics for designing water-stable MOFs lack generality and limit the diversity of explored chemistry due to narrowly defined criteria. Machine learning (ML) models offer the promise to improve the generality of predictions but require data. In an improvement on previous efforts, we enlarge the available training data for MOF water stability prediction by over 400%, adding 911 MOFs with water stability labels assigned through semiautomated manuscript analysis to curate the new data set WS24. The additional data are shown to improve ML model performance (test ROC-AUC &gt; 0.8) over diverse chemistry for the prediction of both water stability and stability in harsher acidic conditions. We illustrate how the expanded data set and models can be used with a previously developed activation stability model in combination with genetic algorithms to quickly screen ∼10,000 MOFs from a space of hundreds of thousands for candidates with multivariate stability (upon activation, in water, and in acid). We uncover metal- and geometry-specific design rules for robust MOFs. The data set and ML models developed in this work, which we disseminate through an easy-to-use web interface, are expected to contribute toward the accelerated discovery of novel, water-stable MOFs for applications such as direct air gas capture and water treatment.
</summary>
<dc:date>2024-07-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Diminished Repetition Suppression Reveals Selective and Systems-Level Face Processing Differences in ASD</title>
<link href="https://hdl.handle.net/1721.1/165687" rel="alternate"/>
<author>
<name>D'Mello, Anila M</name>
</author>
<author>
<name>Frosch, Isabelle R</name>
</author>
<author>
<name>Meisler, Steven L</name>
</author>
<author>
<name>Grotzinger, Hannah</name>
</author>
<author>
<name>Perrachione, Tyler K</name>
</author>
<author>
<name>Gabrieli, John DE</name>
</author>
<id>https://hdl.handle.net/1721.1/165687</id>
<updated>2026-04-25T03:05:05Z</updated>
<published>2023-03-15T00:00:00Z</published>
<summary type="text">Diminished Repetition Suppression Reveals Selective and Systems-Level Face Processing Differences in ASD
D'Mello, Anila M; Frosch, Isabelle R; Meisler, Steven L; Grotzinger, Hannah; Perrachione, Tyler K; Gabrieli, John DE
Repeated exposure to a stimulus results in reduced neural response, or repetition suppression, in brain regions responsible for processing that stimulus. This rapid accommodation to repetition is thought to underlie learning, stimulus selectivity, and strengthening of perceptual expectations. Importantly, reduced sensitivity to repetition has been identified in several neurodevelopmental, learning, and psychiatric disorders, including autism spectrum disorder (ASD), a neurodevelopmental disorder characterized by challenges in social communication and repetitive behaviors and restricted interests. Reduced ability to exploit or learn from repetition in ASD is hypothesized to contribute to sensory hypersensitivities, and parallels several theoretical frameworks claiming that ASD individuals show difficulty using regularities in the environment to facilitate behavior. Using fMRI in autistic and neurotypical human adults (females and males), we assessed the status of repetition suppression across two modalities (vision, audition) and with four stimulus categories (faces, objects, printed words, and spoken words). ASD individuals showed domain-specific reductions in repetition suppression for face stimuli only, but not for objects, printed words, or spoken words. Reduced repetition suppression for faces was associated with greater challenges in social communication in ASD. We also found altered functional connectivity between atypically adapting cortical regions and higher-order face recognition regions, and microstructural differences in related white matter tracts in ASD. These results suggest that fundamental neural mechanisms and system-wide circuits are selectively altered for face processing in ASD and enhance our understanding of how disruptions in the formation of stable face representations may relate to higher-order social communication processes.
</summary>
<dc:date>2023-03-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Caged AIEgens: Multicolor and White Emission Triggered by Mechanical Activation</title>
<link href="https://hdl.handle.net/1721.1/165686" rel="alternate"/>
<author>
<name>Sun, Yunyan</name>
</author>
<author>
<name>Wang, Kecheng</name>
</author>
<author>
<name>Huang, Xiao</name>
</author>
<author>
<name>Wei, Shixuan</name>
</author>
<author>
<name>Contreras, Enrique</name>
</author>
<author>
<name>Jain, Prashant K</name>
</author>
<author>
<name>Campos, Luis M</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<author>
<name>Moore, Jeffrey S</name>
</author>
<id>https://hdl.handle.net/1721.1/165686</id>
<updated>2026-04-25T03:04:21Z</updated>
<published>2024-09-22T00:00:00Z</published>
<summary type="text">Caged AIEgens: Multicolor and White Emission Triggered by Mechanical Activation
Sun, Yunyan; Wang, Kecheng; Huang, Xiao; Wei, Shixuan; Contreras, Enrique; Jain, Prashant K; Campos, Luis M; Kulik, Heather J; Moore, Jeffrey S
Aggregation-induced emission luminogens (AIEgens) that respond to mechanical force are increasingly used as force probes, memory devices, and advanced security systems. Most of the known mechanisms to modulate mechanoresponsive AIEgens have been based on changes in aggregation states, involving only physical alterations. Instances that employ covalent bond cleavage are still rare. We have developed a novel mechanochemical uncaging strategy to unveil AIEgens with diverse emission characteristics using engineered norborn-2-en-7-one (NEO) mechanophores. These &lt;b&gt;NEO&lt;/b&gt; mechanophores were covalently integrated into polymer molecules and activated in both the solution and solid states. This activation resulted in highly tunable fluorescence upon immobilization through solidification or aggregation, producing blue, green, yellow, and orange-red emissions. By designing the caged and uncaged forms as donor-acceptor pairs for Förster resonance energy transfer (FRET), we achieved multicolor mechanofluorescence, effectively broadening the color spectrum to include white emission. Additionally, we computationally explored the electronic structures of activated NEOs, providing insights into the observed regiochemical effects of the substituents. This understanding, together with the novel luminogenic characteristics of the caged and activated species, provides a highly tunable reporter that traces progress with continuous color evolution. This advancement paves the way for future applications of mechanoresponsive materials in areas like damage detection and bioimaging.
</summary>
<dc:date>2024-09-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Electrophysiological Signatures of Visual Recognition Memory across All Layers of Mouse V1</title>
<link href="https://hdl.handle.net/1721.1/165685" rel="alternate"/>
<author>
<name>Hayden, Dustin J</name>
</author>
<author>
<name>Finnie, Peter SB</name>
</author>
<author>
<name>Thomazeau, Aurore</name>
</author>
<author>
<name>Li, Alyssa Y</name>
</author>
<author>
<name>Cooke, Samuel F</name>
</author>
<author>
<name>Bear, Mark F</name>
</author>
<id>https://hdl.handle.net/1721.1/165685</id>
<updated>2026-04-25T03:05:35Z</updated>
<published>2023-11-01T00:00:00Z</published>
<summary type="text">Electrophysiological Signatures of Visual Recognition Memory across All Layers of Mouse V1
Hayden, Dustin J; Finnie, Peter SB; Thomazeau, Aurore; Li, Alyssa Y; Cooke, Samuel F; Bear, Mark F
In mouse primary visual cortex (V1), familiar stimuli evoke significantly altered responses when compared with novel stimuli. This stimulus-selective response plasticity (SRP) was described originally as an increase in the magnitude of visual evoked potentials (VEPs) elicited in layer 4 (L4) by familiar phase-reversing grating stimuli. SRP is dependent on NMDA receptors (NMDARs) and has been hypothesized to reflect potentiation of thalamocortical (TC) synapses in L4. However, recent evidence indicates that the synaptic modifications that manifest as SRP do not occur on L4 principal cells. To shed light on where and how SRP is induced and expressed in male and female mice, the present study had three related aims: (1) to confirm that NMDAR are required specifically in glutamatergic principal neurons of V1, (2) to investigate the consequences of deleting NMDAR specifically in L6, and (3) to use translaminar electrophysiological recordings to characterize SRP expression in different layers of V1. We find that knock-out (KO) of NMDAR in L6 principal neurons disrupts SRP. Current-source density (CSD) analysis of the VEP depth profile shows augmentation of short latency current sinks in layers 3, 4, and 6 in response to phase reversals of familiar stimuli. Multiunit recordings demonstrate that increased peak firing occurs in response to phase reversals of familiar stimuli across all layers, but that activity between phase reversals is suppressed. Together, these data reveal important aspects of the underlying phenomenology of SRP and generate new hypotheses for the expression of experience-dependent plasticity in V1.
</summary>
<dc:date>2023-11-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The tension-activated carbon–carbon bond</title>
<link href="https://hdl.handle.net/1721.1/165684" rel="alternate"/>
<author>
<name>Sun, Yunyan</name>
</author>
<author>
<name>Kevlishvili, Ilia</name>
</author>
<author>
<name>Kouznetsova, Tatiana B</name>
</author>
<author>
<name>Burke, Zach P</name>
</author>
<author>
<name>Craig, Stephen L</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<author>
<name>Moore, Jeffrey S</name>
</author>
<id>https://hdl.handle.net/1721.1/165684</id>
<updated>2026-04-25T03:04:46Z</updated>
<published>2024-10-10T00:00:00Z</published>
<summary type="text">The tension-activated carbon–carbon bond
Sun, Yunyan; Kevlishvili, Ilia; Kouznetsova, Tatiana B; Burke, Zach P; Craig, Stephen L; Kulik, Heather J; Moore, Jeffrey S
Mechanical force drives distinct chemical reactions; yet, its vectoral nature results in complicated coupling with reaction trajectories. Here, we utilize a physical organic model inspired by the classical Morse potential and its differential forms to identify effective force constant (k eff) and reaction energy (ΔE) as key molecular features that govern mechanochemical kinetics. Through a comprehensive experimental and computational investigation with four norborn-2-en-7-one (NEO) mechanophores, we establish the relationship between these features and the force-dependent energetic changes along the reaction pathways. We show that the complex kinetic behavior of the tensioned bonds is generally and quantitatively predicted by a simple multivariate linear regression based on the two easily computed features with a straightforward workflow. These results demonstrate a general mechanistic framework for mechanochemical reactions under tensile force and provide a highly accessible tool for the large-scale computational screening in the design of mechanophores.
</summary>
<dc:date>2024-10-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Transgenic Targeting of Fcrls Creates a Highly Efficient Constitutively Active Microglia Cre Line with Differentiated Specificity</title>
<link href="https://hdl.handle.net/1721.1/165683" rel="alternate"/>
<author>
<name>Kaiser, Tobias</name>
</author>
<author>
<name>Dattero, Jordan</name>
</author>
<author>
<name>Li, Liang</name>
</author>
<author>
<name>Chen, Mandy</name>
</author>
<author>
<name>Jiang, Minqing</name>
</author>
<author>
<name>Harrahill, Andrew</name>
</author>
<author>
<name>Butovsky, Oleg</name>
</author>
<author>
<name>Feng, Guoping</name>
</author>
<id>https://hdl.handle.net/1721.1/165683</id>
<updated>2026-04-25T03:05:11Z</updated>
<published>2024-07-01T00:00:00Z</published>
<summary type="text">Transgenic Targeting of Fcrls Creates a Highly Efficient Constitutively Active Microglia Cre Line with Differentiated Specificity
Kaiser, Tobias; Dattero, Jordan; Li, Liang; Chen, Mandy; Jiang, Minqing; Harrahill, Andrew; Butovsky, Oleg; Feng, Guoping
Microglia carry out important functions as the resident macrophages of the brain. To study their role in health and disease, the research community needs tools to genetically modify them with maximum completeness in a manner that distinguishes them from closely related cell types, such as monocytes. While currently available tamoxifen-inducible CreERT2 lines can achieve the differentiation from other cells, the field needs improved and publicly available constitutively active Cre lines, especially ones with favorable efficiency and specificity profiles for studies where high recombination efficiency is imperative and where tamoxifen administration is contraindicated. Here, we leverage the microglia-specific Fcrls gene to generate mice expressing Cre. Using genomic methods, we show correct positioning of the transgene and intact microglia homeostasis in Fcrls-2A-Cre mice. Crossing Fcrls-2A-Cre mice to four different reporters, we demonstrate highly efficient recombination in microglia across differentially sensitive loxP alleles in different genomic contexts, indicating robust applicability of the line. Further, we show that microglia recombine a loxP reporter during early embryonic development, supporting the use of the line for developmental studies. Finally, using immunofluorescence and flow cytometry, we reveal that most border-associated macrophages are also targeted whereas only few liver and spleen macrophages and virtually no white blood cell subsets exhibit Cre activity, distinguishing this line from another publicly available Cre line, Cx3cr1-CreM. Fcrls-2A-Cre mice are immediately available (JAX #036591) and serve as a valuable addition to the community's microglia toolbox by providing highly efficient constitutive Cre activity with excellent specificity, particularly for studies where tamoxifen administration is undesirable.
</summary>
<dc:date>2024-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>&#119896;-Variance: A Clustered Notion of Variance</title>
<link href="https://hdl.handle.net/1721.1/165682" rel="alternate"/>
<author>
<name>Solomon, Justin</name>
</author>
<author>
<name>Greenewald, Kristjan</name>
</author>
<author>
<name>Nagaraja, Haikady</name>
</author>
<id>https://hdl.handle.net/1721.1/165682</id>
<updated>2026-04-25T03:06:02Z</updated>
<published>2022-09-01T00:00:00Z</published>
<summary type="text">&#119896;-Variance: A Clustered Notion of Variance
Solomon, Justin; Greenewald, Kristjan; Nagaraja, Haikady
We introduce &#119896;-variance, a generalization of variance built on the machinery of random bipartite matchings. &#119896;-variance measures the expected cost of matching two sets of &#119896; samples from a distribution to each other, capturing local rather than global information about a measure as &#119896; increases; it is easily approximated stochastically using sampling and linear programming. In addition to defining &#119896;-variance and proving its basic properties, we provide in-depth analysis of this quantity in several key cases, including one-dimensional measures, clustered measures, and measures concentrated on low-dimensional subsets of ℝ&#119899;. We conclude with experiments and open problems motivated by this new way to summarize distributional shape.
</summary>
<dc:date>2022-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Data-Driven Screening and Discovery of Metal–Organic Frameworks as C2 Adsorbents from over 900 Experimental Isotherms</title>
<link href="https://hdl.handle.net/1721.1/165681" rel="alternate"/>
<author>
<name>Rivera, Matthew P</name>
</author>
<author>
<name>Terrones, Gianmarco G</name>
</author>
<author>
<name>Lee, Tae Hoon</name>
</author>
<author>
<name>Smith, Zachary P</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165681</id>
<updated>2026-04-25T03:05:41Z</updated>
<published>2024-11-27T00:00:00Z</published>
<summary type="text">Data-Driven Screening and Discovery of Metal–Organic Frameworks as C2 Adsorbents from over 900 Experimental Isotherms
Rivera, Matthew P; Terrones, Gianmarco G; Lee, Tae Hoon; Smith, Zachary P; Kulik, Heather J
The separation of ethylene from ethane accounts for almost 100 million tons of CO2 emissions annually and 0.3% of global primary energy usage. Replacing current cryogenic distillation units with adsorption separation units, especially for the minor component of ethane, would enable significant efficiency gains. Metal–organic frameworks (MOFs) are well-suited for adsorption separation due to their high surface areas and tunable chemical properties. Exploring all possible MOFs is a daunting experimental challenge, motivating in silico screening with machine learning models. We present a database of 948 experimentally measured pure-component C2 isotherms from 192 MOFs gathered from the literature and use it to train machine learning models to predict MOF ethane and ethylene uptake across a range of temperature and pressure conditions. The models have high accuracy in interpolative tasks (mean absolute error ∼0.05 mmol/g) when trained on only 20% of available data. Performance on unseen structures was also reasonably accurate with a mean absolute error (MAE) ∼0.7 mmol/g. We apply the models to screen the CoRE MOF2019 ASR database and identify the most promising candidates. Several MOFs containing lanthanide metals were predicted to have high ethane selectivity, suggesting that this class of MOFs may merit further investigation. Feature importance analysis suggests that both optimizing MOF secondary building unit chemistry and the process conditions at which the sorbent will operate are critical for enabling ethane-selective separation. We synthesize a MOF predicted to exhibit high ethane selectivity and experimentally validate qualitative agreement with model predictions, highlighting the utility of both the data set and model in discovering unexplored C2 adsorbents.
</summary>
<dc:date>2024-11-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wide-Band Butterfly Network: Stable and Efficient Inversion Via Multi-Frequency Neural Networks</title>
<link href="https://hdl.handle.net/1721.1/165680" rel="alternate"/>
<author>
<name>Li, Matthew</name>
</author>
<author>
<name>Demanet, Laurent</name>
</author>
<author>
<name>Zepeda-Núñez, Leonardo</name>
</author>
<id>https://hdl.handle.net/1721.1/165680</id>
<updated>2026-04-25T03:07:39Z</updated>
<published>2022-12-31T00:00:00Z</published>
<summary type="text">Wide-Band Butterfly Network: Stable and Efficient Inversion Via Multi-Frequency Neural Networks
Li, Matthew; Demanet, Laurent; Zepeda-Núñez, Leonardo
We introduce an end-to-end deep learning architecture called the wide-band butterfly network (WideBNet) for approximating the inverse scattering map from wide-band scattering data. This architecture incorporates tools from computational harmonic analysis, such as the butterfly factorization, and traditional multi-scale methods, such as the Cooley–Tukey FFT algorithm, to drastically reduce the number of trainable parameters to match the inherent complexity of the problem. As a result, WideBNet is efficient: it requires fewer training points than off-the-shelf architectures and has stable training dynamics which are compatible with standard weight initialization strategies. The architecture automatically adapts to the dimensions of the data with only a few hyper-parameters that the user must specify. WideBNet is able to produce images that are competitive with optimization-based approaches, but at a fraction of the cost, and we also demonstrate numerically that it learns to super-resolve scatterers with a full aperture configuration.
</summary>
<dc:date>2022-12-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimal (Euclidean) Metric Compression</title>
<link href="https://hdl.handle.net/1721.1/165679" rel="alternate"/>
<author>
<name>Indyk, Piotr</name>
</author>
<author>
<name>Wagner, Tal</name>
</author>
<id>https://hdl.handle.net/1721.1/165679</id>
<updated>2026-04-25T03:05:48Z</updated>
<published>2022-06-01T00:00:00Z</published>
<summary type="text">Optimal (Euclidean) Metric Compression
Indyk, Piotr; Wagner, Tal
We study the problem of representing all distances between &#119899; points in ℝ&#119889;, with arbitrarily small distortion, using as few bits as possible. We give asymptotically tight bounds for this problem, for Euclidean metrics, for ℓ1 (also known as Manhattan)-metrics, and for general metrics. Our bounds for Euclidean metrics mark the first improvement over compression schemes based on discretizing the classical dimensionality reduction theorem of Johnson and Lindenstrauss [Contemp. Math. 26 (1984), pp. 189--206]. Since it is known that no better dimension reduction is possible, our results establish that Euclidean metric compression is possible beyond dimension reduction.
</summary>
<dc:date>2022-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>No Bridge between Us: EXAFS and Computations Confirm Two Distant Iron Ions Comprise the Active Site of Alkane Monooxygenase (AlkB)</title>
<link href="https://hdl.handle.net/1721.1/165678" rel="alternate"/>
<author>
<name>Reinhardt, Clorice R</name>
</author>
<author>
<name>Lee, Juliet A</name>
</author>
<author>
<name>Hendricks, Lauren</name>
</author>
<author>
<name>Green, Tierani</name>
</author>
<author>
<name>Kunczynski, Lily</name>
</author>
<author>
<name>Roberts, August Jaunzarins</name>
</author>
<author>
<name>Miller, Naomi</name>
</author>
<author>
<name>Rafalin, Noga</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<author>
<name>Pollock, Christopher J</name>
</author>
<author>
<name>Austin, Rachel N</name>
</author>
<id>https://hdl.handle.net/1721.1/165678</id>
<updated>2026-04-25T03:06:10Z</updated>
<published>2025-01-07T00:00:00Z</published>
<summary type="text">No Bridge between Us: EXAFS and Computations Confirm Two Distant Iron Ions Comprise the Active Site of Alkane Monooxygenase (AlkB)
Reinhardt, Clorice R; Lee, Juliet A; Hendricks, Lauren; Green, Tierani; Kunczynski, Lily; Roberts, August Jaunzarins; Miller, Naomi; Rafalin, Noga; Kulik, Heather J; Pollock, Christopher J; Austin, Rachel N
Alkane monooxygenase (AlkB) is the dominant enzyme that catalyzes the oxidation of liquid alkanes in the environment. Two recent structural models derived from cryo-electron microscopy (cryo-EM) reveal an unusual active site: a histidine-rich center that binds two iron ions without a bridging ligand. To ensure that potential photoreduction and radiation damage are not responsible for the absence of a bridging ligand in the cryo-EM structures, spectroscopic methods are needed. We present the results of extended X-ray absorption fine structure (EXAFS) experiments collected under conditions where photodamage was avoided. Careful data analysis reveals an active site structure consistent with the cryo-EM structures in which the two iron ions are ligated by nine histidines and separated by at least 5 Å. The EXAFS data were used to inform structural models for molecular dynamics (MD) simulations. The MD simulations corroborate EXAFS observations that neither of the two conserved carboxylate-containing residues (E281 and D190) near the active site are likely candidates for metal ion bridging. Mutagenesis experiments, spectroscopy, and additional MD simulations were used to further explore the role of these carboxylate residues. A variant in which a carboxylate containing residue (E281) was changed to a methyl residue (E281A) showed little change in pre-edge features, consistent with the observation that it is not essential for activity and hence unlikely to serve as a bridging ligand at any point in the catalytic cycle. D190 variants had substantially diminished activity, suggesting an important role in catalysis not yet fully understood.
</summary>
<dc:date>2025-01-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Computational Screening of Putative Catalyst Transition Metal Complexes as Guests in a Ga4L612– Nanocage</title>
<link href="https://hdl.handle.net/1721.1/165677" rel="alternate"/>
<author>
<name>Reinhardt, Clorice R</name>
</author>
<author>
<name>Manetsch, Melissa T</name>
</author>
<author>
<name>Li, Wan-Lu</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Head-Gordon, Teresa</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165677</id>
<updated>2026-04-25T03:05:29Z</updated>
<published>2024-07-25T00:00:00Z</published>
<summary type="text">Computational Screening of Putative Catalyst Transition Metal Complexes as Guests in a Ga4L612– Nanocage
Reinhardt, Clorice R; Manetsch, Melissa T; Li, Wan-Lu; Román-Leshkov, Yuriy; Head-Gordon, Teresa; Kulik, Heather J
Metal–organic cages form well-defined microenvironments that can enhance the catalytic proficiency of encapsulated transition metal complexes (TMCs). We introduce a screening protocol to efficiently identify TMCs that are promising candidates for encapsulation in the Ga4L612– nanocage. We obtain TMCs from the Cambridge Structural Database with geometric and electronic characteristics amenable to encapsulation and mine the text of associated manuscripts to curate TMCs with documented catalytic functionality. By docking candidate TMCs inside the nanocage cavity and carrying out electronic structure calculations, we identify a subset of successfully optimized candidates (TMC-34) and observe that encapsulated guests occupy an average of 60% of the cavity volume, in line with previous observations. Notably, some guests occupy as much as 72% of the cavity as a result of linker rotation. Encapsulation has a universal effect on the electrostatic potential (ESP), systematically decreasing the ESP at the metal center of each TMC in the TMC-34 data set, while minimally altering TMC metal partial charges. Collectively these observations support geometry-based screening of potential guests and suggest that encapsulation in Ga4L612- cages could electrostatically stabilize diverse cationic or electropositive intermediates. We highlight candidate guests with associated known reactivity and solubility most amenable for encapsulation in experimental follow-up studies.
</summary>
<dc:date>2024-07-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Role of Active Site Residues and Weak Noncovalent Interactions in Substrate Positioning in N,N-Dimethylformamidase</title>
<link href="https://hdl.handle.net/1721.1/165676" rel="alternate"/>
<author>
<name>Reinhardt, Clorice R</name>
</author>
<author>
<name>Kastner, David W</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165676</id>
<updated>2026-04-25T03:07:18Z</updated>
<published>2025-06-17T00:00:00Z</published>
<summary type="text">Role of Active Site Residues and Weak Noncovalent Interactions in Substrate Positioning in N,N-Dimethylformamidase
Reinhardt, Clorice R; Kastner, David W; Kulik, Heather J
N,N-Dimethylformamide (DMF) is a solvent that can be metabolized naturally by DMF-utilizing microorganisms via a nonheme iron enzyme N,N-dimethylformamidase (DMFase). DMF is a small molecule with very few hydrogen bond donors or acceptors, and thus must be bound in the active site through other noncovalent interactions. We investigated the unusual protein fold, role of active site residues, and substrate positioning by performing molecular dynamics (MD) simulations and studying DMF binding. Our docking studies support idea that the DMF substrate directly coordinates the iron center through its carbonyl group, with Fe–DMF distances consistent with structures of inorganic complexes. DMF binding is predominantly stabilized by weak noncovalent interactions with nearby phenylalanine residues, which also serve to control access of solvent to the active site according to cavity analysis of crystal structures and MD snapshots. Based on noncovalent interactions sampled in our simulations and on sequence conservation, we ascribe roles to active site residues E657β, H519β, N547β, F611β, and F693β′. We perform sequence and structural alignments to identify putative DMFases and active site geometries in protein structures predicted from metagenomic DNA. These analyses suggest common conserved residues among putative DMFases and relate them to catalytic function, providing guidance for future experimental studies or characterization of new DMFases for DMF bioremediation.
</summary>
<dc:date>2025-06-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Benchmarking nitrous oxide adsorption and activation in metal–organic frameworks bearing coordinatively unsaturated metal centers</title>
<link href="https://hdl.handle.net/1721.1/165675" rel="alternate"/>
<author>
<name>Pitt, Tristan A</name>
</author>
<author>
<name>Jia, Haojun</name>
</author>
<author>
<name>Azbell, Tyler J</name>
</author>
<author>
<name>Zick, Mary E</name>
</author>
<author>
<name>Nandy, Aditya</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<author>
<name>Milner, Phillip J</name>
</author>
<id>https://hdl.handle.net/1721.1/165675</id>
<updated>2026-04-25T03:05:59Z</updated>
<published>2024-01-01T00:00:00Z</published>
<summary type="text">Benchmarking nitrous oxide adsorption and activation in metal–organic frameworks bearing coordinatively unsaturated metal centers
Pitt, Tristan A; Jia, Haojun; Azbell, Tyler J; Zick, Mary E; Nandy, Aditya; Kulik, Heather J; Milner, Phillip J
Anthropogenic emissions of N2O, the third most abundant greenhouse gas after CO2 and CH4, are contributing to global climate change. Although metal–organic frameworks (MOFs) have been widely studied as adsorbents for CO2 and CH4, less effort has focused on the use of MOFs to remove N2O from emission streams or from air. Further, N2O activation would enable its use as an inexpensive oxidant for fine chemical synthesis. Herein, we identify features that contribute to strong binding and high uptake of N2O at coordinatively unsaturated metal sites in the M2Cl2(btdd) (M = Mn, Co, Ni, Cu; btdd2− = bis(1,2,3-triazolo[4,5-b],[4′,5′-i])dibenzo[1,4]dioxin) and M2(dobdc) (M = Mg, Mn, Fe, Co, Ni, Cu, Zn; dobdc4− = 2,5-dioxido-1,4-benzenedicarboxylate) series of MOFs. Combined experimental and computational studies suggest that N2O adsorption at open-metal-sites is primarily based on electrostatic interactions, rather than π-backbonding, causing MOFs with more Lewis acidic metal centers to be superior N2O adsorbents. As a result, Mg2(dobdc) demonstrates strong binding and record-setting N2O uptake (8.75 mmol g−1 at 1 bar and 298 K). Using density functional theory (DFT) to characterize reactive intermediates and transition states, we demonstrate that N2O activation to form a M(IV)–oxo species and N2 is thermodynamically favorable in Mn2(dobdc) and Fe2(dobdc) but appears to be kinetically limited in Mn2(dobdc). Our work lays a foundation for understanding N2O adsorption and activation in MOFs, paving the way for the design of promising next-generation materials for N2O capture and utilization.
</summary>
<dc:date>2024-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>MOFs with the Stability for Practical Gas Adsorption Applications Require New Design Rules</title>
<link href="https://hdl.handle.net/1721.1/165674" rel="alternate"/>
<author>
<name>Oh, Changhwan</name>
</author>
<author>
<name>Nandy, Aditya</name>
</author>
<author>
<name>Yue, Shuwen</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165674</id>
<updated>2026-04-25T03:06:41Z</updated>
<published>2024-10-04T00:00:00Z</published>
<summary type="text">MOFs with the Stability for Practical Gas Adsorption Applications Require New Design Rules
Oh, Changhwan; Nandy, Aditya; Yue, Shuwen; Kulik, Heather J
Metal-organic frameworks (MOFs) have been widely studied for their ability to capture and store greenhouse gases. However, most computational discovery efforts study hypothetical MOFs without consideration of their stability, limiting the practical application of novel materials. We overcome this limitation by screening hypothetical ultrastable MOFs that have predicted high thermal and activation stability, as judged by machine learning (ML) models trained on experimental measures of stability. We enhance this set by computing the bulk modulus as a measure of mechanical stability and filter 1102 mechanically robust hypothetical MOFs from a database of ultrastable MOFs (USMOF DB). Grand Canonical Monte Carlo simulations are then employed to predict the gas adsorption properties of these hypothetical MOFs, alongside a database of experimental MOFs. We identify privileged building blocks that lead MOFs in USMOF DB to show exceptional working capacities compared to the experimental MOFs. We interpret these differences by training ML models on CO&lt;sub&gt;2&lt;/sub&gt; and CH&lt;sub&gt;4&lt;/sub&gt; adsorption in these databases, showing how poor model transferability between data sets indicates that novel design rules can be derived from USMOF DB that would not have been gathered through assessment of structurally characterized MOFs. We identify geometric features and node chemistry that will enable the rational design of MOFs with enhanced gas adsorption properties in synthetically realizable MOFs.
</summary>
<dc:date>2024-10-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Incorporating Anionic Ligands in Chemical Space Exploration with New Ligand Additivity Relationships</title>
<link href="https://hdl.handle.net/1721.1/165673" rel="alternate"/>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165673</id>
<updated>2026-04-25T03:07:34Z</updated>
<published>2025-06-03T00:00:00Z</published>
<summary type="text">Incorporating Anionic Ligands in Chemical Space Exploration with New Ligand Additivity Relationships
Kulik, Heather J
Chemical space exploration motivates the development of data-driven models that bypass explicit computation or experiment. Cost-efficient strategies include the concept of additivity via the many-body expansion that treats a molecule as the sum of its parts. In the context of transition metal chemistry, ligand-wise additivity has been established as a powerful tool to infer the properties of heteroleptic transition metal complexes (TMCs) from homoleptic TMCs to excellent accuracy, including spin-splitting, orbital energies, and reaction energies. Nevertheless, this framework is incompatible with anionic ligands because a stable homoleptic, and thus polyanionic, parent complex cannot be simulated readily. Here, I explore alternative approaches, first identifying the limits of stability of heteroleptic TMCs when successive Cl&lt;sup&gt;-&lt;/sup&gt; anions are added in representative complexes formed with neutral H&lt;sub&gt;2&lt;/sub&gt;O and CO ligands. I establish that expected linear relationships are preserved, albeit not as strongly as in complexes with neutral ligands. I propose data-efficient interpolation and extrapolation schemes for TMCs that achieve root-mean-square errors as low as 0.15-0.36 eV on HOMO/LUMO levels and gaps or ionization potentials and electron affinities and 4 kcal/mol on adiabatic spin-splitting energies for Fe(II) complexes. I show that this approach generalizes well across TMCs with 14 other 3d, 4d, and 5d metals. Finally, I extend this approach to predict properties of thousands of binary and ternary Fe(II) or Zn(II) complexes involving a single neutral ligand and up to two unique anionic ligands by leveraging a handful of calculations. I show how this interpolated space can be used to infer the limits of stable and valid complexes and to discover complexes with novel properties.
</summary>
<dc:date>2025-06-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Roadmap on Machine learning in electronic structure</title>
<link href="https://hdl.handle.net/1721.1/165672" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165672</id>
<updated>2026-04-24T03:06:42Z</updated>
<published>2022-08-19T00:00:00Z</published>
<summary type="text">Roadmap on Machine learning in electronic structure
In recent years, we have been witnessing a paradigm shift in computational materials science. In fact, traditional methods, mostly developed in the second half of the XXth century, are being complemented, extended, and sometimes even completely replaced by faster, simpler, and often more accurate approaches. The new approaches, that we collectively label by machine learning, have their origins in the fields of informatics and artificial intelligence, but are making rapid inroads in all other branches of science. With this in mind, this Roadmap article, consisting of multiple contributions from experts across the field, discusses the use of machine learning in materials science, and share perspectives on current and future challenges in problems as diverse as the prediction of materials properties, the construction of force-fields, the development of exchange correlation functionals for density-functional theory, the solution of the many-body problem, and more. In spite of the already numerous and exciting success stories, we are just at the beginning of a long path that will reshape materials science for the many challenges of the XXIth century.
</summary>
<dc:date>2022-08-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reaction: The challenge of open-shell transition metal catalysis in “systems chemistry”</title>
<link href="https://hdl.handle.net/1721.1/165671" rel="alternate"/>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165671</id>
<updated>2026-04-24T03:06:11Z</updated>
<published>2024-08-08T00:00:00Z</published>
<summary type="text">Reaction: The challenge of open-shell transition metal catalysis in “systems chemistry”
Kulik, Heather J
Data-driven methods have transformed the scale at which chemical&#13;
transformations are being explored. This includes novel machine learning models for&#13;
retrosynthesis, reaction prediction, and small-molecule generation, to name a few. Novel&#13;
datasets from high-throughput computation (e.g., with first-principles density functional&#13;
theory) as well as high-throughput experimentation or extraction from the literature are&#13;
dramatically increasing the scale at which new compounds are discovered as well as the&#13;
benefits that can be reaped from deep learning models.
</summary>
<dc:date>2024-08-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Heterocyclic Modification Leading to Luminescent 0D Metal Organochalcogenide with Stable X-ray Scintillating Properties</title>
<link href="https://hdl.handle.net/1721.1/165670" rel="alternate"/>
<author>
<name>Khamlue, Rattapon</name>
</author>
<author>
<name>Sakurada, Tomoaki</name>
</author>
<author>
<name>Cho, Yeongsu</name>
</author>
<author>
<name>Lee, Woo Seok</name>
</author>
<author>
<name>Leangtanom, Pimpan</name>
</author>
<author>
<name>Taylor, Michael G</name>
</author>
<author>
<name>Naewthong, Worakit</name>
</author>
<author>
<name>Sripetch, Pongsakun</name>
</author>
<author>
<name>Na Ranong, Busayakorn</name>
</author>
<author>
<name>Autila, Tossawat</name>
</author>
<author>
<name>Rungseesumran, Thiti</name>
</author>
<author>
<name>Kaewkhao, Jakrapong</name>
</author>
<author>
<name>Sudyoadsuk, Taweesak</name>
</author>
<author>
<name>Kopwitthaya, Atcha</name>
</author>
<author>
<name>Müller, Peter</name>
</author>
<author>
<name>Promarak, Vinich</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<author>
<name>Tisdale, William A</name>
</author>
<author>
<name>Paritmongkol, Watcharaphol</name>
</author>
<id>https://hdl.handle.net/1721.1/165670</id>
<updated>2026-04-24T03:07:25Z</updated>
<published>2024-05-07T00:00:00Z</published>
<summary type="text">Heterocyclic Modification Leading to Luminescent 0D Metal Organochalcogenide with Stable X-ray Scintillating Properties
Khamlue, Rattapon; Sakurada, Tomoaki; Cho, Yeongsu; Lee, Woo Seok; Leangtanom, Pimpan; Taylor, Michael G; Naewthong, Worakit; Sripetch, Pongsakun; Na Ranong, Busayakorn; Autila, Tossawat; Rungseesumran, Thiti; Kaewkhao, Jakrapong; Sudyoadsuk, Taweesak; Kopwitthaya, Atcha; Müller, Peter; Promarak, Vinich; Kulik, Heather J; Tisdale, William A; Paritmongkol, Watcharaphol
Metal organochalcogenides (MOCs) are an emerging class of luminescent hybrid organic–inorganic semiconductors, whose structures and properties can be tuned by organic functionalization and substitutions of their metal and chalcogen elements. Herein, we present a new design strategy by heterocyclic modification, resulting in the transformation of prototypical two-dimensional (2D) silver phenylselenide (AgSePh) to a zero-dimensional (0D) silver pyridinylselenide (AgSePy) via the formation of Ag–N bonds. At room temperature, AgSePy shows strong and broad orange photoluminescence (PL; λmax = 636 nm, full-width-at-half-maximum = 111 nm, quantum yield = 64%) with a large 259 nm Stoke’s shift and a 3.4 μs lifetime. Using steady-state and time-resolved PL spectroscopy under varying temperature and oxygen conditions, we found AgSePy to exhibit air-stable luminescence and maintain a high PL quantum yield and a single exponential PL lifetime down to 4 K. Furthermore, AgSePy shows excellent thermal stability up to ∼250 °C and chemical stability against polar, nonpolar, and aqueous solvents at pH 3–14. Density functional theory calculations further confirm the 0D electronic structure. Finally, we successfully demonstrated the performance of AgSePy as an X-ray scintillator with an estimated light yield of ∼8,000 phe/MeV and a spatial resolution down to 0.080 ± 0.005 mm. Overall, this work provides a novel tactic to modify the structures and properties of MOCs, highlighting their structural richness and structure–property relationship, and introduces their new use as X-ray scintillators, encouraging further development in radiation detection and medical imaging.
</summary>
<dc:date>2024-05-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Role of the Unusual 2-Tyr-1-carboxylate Nonheme Iron Motif in the Mechanism of N,N-Dimethylformamidase</title>
<link href="https://hdl.handle.net/1721.1/165669" rel="alternate"/>
<author>
<name>Kastner, David W</name>
</author>
<author>
<name>Reinhardt, Clorice R</name>
</author>
<author>
<name>Adamji, Husain</name>
</author>
<author>
<name>Oscar-Okpala, Terence S</name>
</author>
<author>
<name>Kevlishvili, Ilia</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165669</id>
<updated>2026-04-24T03:06:05Z</updated>
<published>2025-07-14T00:00:00Z</published>
<summary type="text">The Role of the Unusual 2-Tyr-1-carboxylate Nonheme Iron Motif in the Mechanism of N,N-Dimethylformamidase
Kastner, David W; Reinhardt, Clorice R; Adamji, Husain; Oscar-Okpala, Terence S; Kevlishvili, Ilia; Román-Leshkov, Yuriy; Kulik, Heather J
N,N-Dimethylformamidase (DMFase) is a nonheme iron enzyme that catalyzes the hydrolysis of N,N-dimethylformamide (DMF) using a noncanonical Fe­(III)-2Tyr-1Glu coordination motif. The precise role that this nonconventional active site plays in catalysis remains poorly understood. We performed an extensive computational investigation of DMFase catalysis, combining reaction pathway analysis with quantum mechanical cluster models, charge shift analysis, and energy decomposition analysis to identify the mechanistic role of the coordinating tyrosines/glutamate and second coordination sphere residues. We compared two mechanisms initiated by the key second coordination sphere residues Glu657 and His519. While both mechanisms generate a ferric hydroxide intermediate, the Glu657-initiated mechanism exhibits more favorable barriers and thermodynamics. These calculations reveal distinct catalytic roles for the second-sphere residues: Glu657 facilitates direct proton transfers, His519 and Asn547 stabilize the rate-determining transition state, and Lys567 stabilizes the anionic tyrosinate state of Tyr440. Mechanistic comparisons to canonical Fe­(II)/Fe­(III)-2His-1Glu variants reveal that coordination of Fe by tyrosine residues lowers the barrier for deprotonation of a water ligand and subsequent nucleophilic attack on DMF. Attempts to tune the active site through fluorination of coordinating tyrosinate residues yield minimal additional benefits, indicating that the native motif has finely tuned electronic characteristics. These results demonstrate how the 2Tyr-1Glu motif and its second coordination sphere context enable hydrolytic reactivity in DMFase and suggest Glu657 and Lys567 as targets of future mutagenesis to validate their mechanistic roles.
</summary>
<dc:date>2025-07-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Computational exploration of codoped Fe and Ru single-atom catalysts for the oxygen reduction reaction</title>
<link href="https://hdl.handle.net/1721.1/165668" rel="alternate"/>
<author>
<name>Jia, Haojun</name>
</author>
<author>
<name>Duan, Chenru</name>
</author>
<author>
<name>Terrones, Gianmarco G</name>
</author>
<author>
<name>Kevlishvili, Ilia</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165668</id>
<updated>2026-04-24T03:05:50Z</updated>
<published>2025-08-01T00:00:00Z</published>
<summary type="text">Computational exploration of codoped Fe and Ru single-atom catalysts for the oxygen reduction reaction
Jia, Haojun; Duan, Chenru; Terrones, Gianmarco G; Kevlishvili, Ilia; Kulik, Heather J
The oxygen reduction reaction (ORR) is essential in a range of energy conversion and storage technologies, including fuel cells and metal–air batteries. Single-atom catalysts (SACs), characterized by isolated metal atoms especially in doped graphitic substrates, have emerged as promising ORR catalysts due to their unique electronic and geometric properties. We employ virtual high-throughput screening (VHTS) with density functional theory and machine learning (ML) to explore the potential of codoped SACs with Fe and Ru centers for optimizing ORR reaction energetics. We also develop ML models, trained on VHTS data, that offer increased predictive accuracy of reaction energetics, surpassing the capabilities of conventional linear free energy relationship approaches. The results underscore codoping as an effective strategy for tuning SAC properties, enabling the rational design of high-performance ORR catalysts.
</summary>
<dc:date>2025-08-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Computational Discovery of Codoped Single-Atom Catalysts for Methane-to-Methanol Conversion</title>
<link href="https://hdl.handle.net/1721.1/165667" rel="alternate"/>
<author>
<name>Jia, Haojun</name>
</author>
<author>
<name>Duan, Chenru</name>
</author>
<author>
<name>Kevlishvili, Ilia</name>
</author>
<author>
<name>Nandy, Aditya</name>
</author>
<author>
<name>Liu, Mingjie</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165667</id>
<updated>2026-04-24T03:07:44Z</updated>
<published>2024-02-13T00:00:00Z</published>
<summary type="text">Computational Discovery of Codoped Single-Atom Catalysts for Methane-to-Methanol Conversion
Jia, Haojun; Duan, Chenru; Kevlishvili, Ilia; Nandy, Aditya; Liu, Mingjie; Kulik, Heather J
The absence of a synthetic catalyst that can selectively oxidize methane to methanol motivates extensive study of single-site catalysts that possess a high degree of tunability in their coordination environments and share similarities with natural enzymes that can catalyze this reaction. Single-atom catalysts (SACs), in particular doped graphitic SACs, have emerged as a promising family of materials due to their high atom economy and scalability, but SACs are yet to be exhaustively screened for methane-to-methanol conversion. Modulating the coordination environment near single metal sites by means of codopants, we carry out a large-scale high-throughput virtual screen of 2048 transition metal (i.e., Mn, Fe, Co, and Ru) SACs codoped with various elements (i.e., N, O, P, and S) in numerous spin and oxidation (i.e., M­(II)/M­(III)) states for the challenging conversion of methane to methanol. We identify that the ground-state preference is metal- and oxidation-state-dependent. We observe a weak negative correlation between the oxo formation energy (ΔE(oxo)) and the energy of hydrogen atom transfer (ΔE(HAT)), thanks to the high variability in the coordination environment. Therefore, codoped SACs demonstrate flexible tunability that disrupts linear free energy relationships in a manner similar to that of homogeneous catalysts without losing the scalability of heterogeneous catalysts. We identify energetically favorable catalyst candidates along the Pareto frontier of ΔE(oxo) and ΔE(HAT). Further kinetic analysis reveals an intermediate-spin Fe­(II) SAC and a low-spin Ru­(II) SAC as promising candidates that merit further experimental exploration.
</summary>
<dc:date>2024-02-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Force-Activated Spin-Crossover in Fe2+ and Co2+ Transition Metal Mechanophores</title>
<link href="https://hdl.handle.net/1721.1/165666" rel="alternate"/>
<author>
<name>Huang, Xiao</name>
</author>
<author>
<name>Kevlishvili, Ilia</name>
</author>
<author>
<name>Craig, Stephen L</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165666</id>
<updated>2026-04-24T03:05:47Z</updated>
<published>2024-12-23T00:00:00Z</published>
<summary type="text">Force-Activated Spin-Crossover in Fe2+ and Co2+ Transition Metal Mechanophores
Huang, Xiao; Kevlishvili, Ilia; Craig, Stephen L; Kulik, Heather J
Transition metal mechanophores exhibiting force-activated spin-crossover are attractive design targets, yet large-scale discovery of them has not been pursued due in large part to the time-consuming nature of trial-and-error experiments. Instead, we leverage density functional theory (DFT) and external force explicitly included (EFEI) modeling to study a set of 395 feasible Fe2+ and Co2+ mechanophore candidates with tridentate ligands that we curate from the Cambridge Structural Database. Among nitrogen-coordinating low-spin complexes, we observe the prevalence of spin crossover at moderate force, and we identify 155 Fe2+ and Co2+ spin-crossover mechanophores and derive their threshold force for low-spin to high-spin transition (FSCO). The calculations reveal strong correlations of FSCO with spin-splitting energies and coordination bond lengths, facilitating rapid prediction of FSCO using force-free DFT calculations. Then, among all Fe2+ and Co2+ spin-crossover mechanophores, we further identity 11 mechanophores that combine labile spin-crossover and good mechanical robustness that are thus predicted to be the most versatile for force-probing applications. We discover two classes of mer-symmetric complexes comprising specific heteroaromatic rings within extended π-conjugation that give rise to Fe2+ mechanophores with these characteristics. We expect the set of spin-crossover mechanophores, the design principles, and the computational approach to be useful in guiding the high-throughput discovery of transition metal mechanophores with diverse functionalities and broad applications, including mechanically activated catalysis.
</summary>
<dc:date>2024-12-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fontimonas thermophila Alkane Monooxygenase (FtAlkB) Is an Alkyl Fluoride Dehalogenase</title>
<link href="https://hdl.handle.net/1721.1/165665" rel="alternate"/>
<author>
<name>Hendricks, Lauren</name>
</author>
<author>
<name>Reinhardt, Clorice R</name>
</author>
<author>
<name>Green, Tierani</name>
</author>
<author>
<name>Kunczynski, Lily</name>
</author>
<author>
<name>Roberts, August Jaunzarins</name>
</author>
<author>
<name>Miller, Naomi</name>
</author>
<author>
<name>Rafalin, Noga</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<author>
<name>Groves, John T</name>
</author>
<author>
<name>Austin, Rachel N</name>
</author>
<id>https://hdl.handle.net/1721.1/165665</id>
<updated>2026-04-24T03:05:06Z</updated>
<published>2025-03-07T00:00:00Z</published>
<summary type="text">Fontimonas thermophila Alkane Monooxygenase (FtAlkB) Is an Alkyl Fluoride Dehalogenase
Hendricks, Lauren; Reinhardt, Clorice R; Green, Tierani; Kunczynski, Lily; Roberts, August Jaunzarins; Miller, Naomi; Rafalin, Noga; Kulik, Heather J; Groves, John T; Austin, Rachel N
Purified alkane monooxygenase (AlkB) from Fontimonas thermophila (FtAlkB) catalyzes the defluorination of 1-&#13;
fluorooctane, producing octanal, which is partially reduced under the reaction conditions to generate 1-octanol. This reaction occurs&#13;
preferentially at the monofluorinated methyl group, with only a minor amount of oxidation at the nonfluorinated end of the&#13;
molecule. The dehalogenation chemistry is specific to 1-fluorooctane, as neither 1-chlorooctane or 1-bromooctane are dehalogenated&#13;
to an appreciable extent. Furthermore, P. putida cells containing the structurally related AlkB (PpAlkB) along with the full set of&#13;
genes required for alkane metabolism, utilize 1-fluorooctane as their sole source of carbon with growth rates comparable to those for&#13;
cells grown with octane.
</summary>
<dc:date>2025-03-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ligand Many-Body Expansion as a General Approach for Accelerating Transition Metal Complex Discovery</title>
<link href="https://hdl.handle.net/1721.1/165664" rel="alternate"/>
<author>
<name>Chu, Daniel BK</name>
</author>
<author>
<name>González-Narváez, David A</name>
</author>
<author>
<name>Meyer, Ralf</name>
</author>
<author>
<name>Nandy, Aditya</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165664</id>
<updated>2026-04-24T03:05:24Z</updated>
<published>2024-11-28T00:00:00Z</published>
<summary type="text">Ligand Many-Body Expansion as a General Approach for Accelerating Transition Metal Complex Discovery
Chu, Daniel BK; González-Narváez, David A; Meyer, Ralf; Nandy, Aditya; Kulik, Heather J
Methods that accelerate the evaluation of molecular properties are essential for&#13;
chemical discovery. While some degree of ligand additivity has been established for transition&#13;
metal complexes, it is underutilized in asymmetric complexes, such as the square pyramidal&#13;
coordination geometries highly relevant to catalysis. To develop predictive methods beyond&#13;
simple additivity, we apply a many-body expansion to octahedral and square pyramidal complexes&#13;
and introduce a correction based on adjacent ligands (i.e., the cis interaction model). We first test&#13;
the cis interaction model on adiabatic spin-splitting energies of octahedral Fe(II) complexes,&#13;
predicting DFT-calculated values of unseen binary complexes to within an average of 1.4 kcal/mol.&#13;
Uncertainty analysis reveals the optimal basis, comprising the homoleptic and mer symmetric&#13;
complexes. We next show that the cis model (i.e., the cis interaction model solved for the optimal&#13;
basis) infers both DFT- and CCSD(T)-calculated model catalytic reaction energies to within 1&#13;
kcal/mol on average. The cis model predicts low-symmetry complexes with reaction energies&#13;
outside the range of binary complex reaction energies. We observe that trans interactions are&#13;
unnecessary for most monodentate systems but can be important for some combinations of ligands,&#13;
such as complexes containing a mixture of bidentate and monodentate ligands. Finally, we&#13;
demonstrate that the cis model may be combined with D-learning to predict CCSD(T) reaction&#13;
energies from exhaustively calculated DFT reaction energies and the same fraction of CCSD(T)&#13;
reaction energies needed for the cis model, achieving around 30% of the error from using the&#13;
CCSD(T) reaction energies in the cis model alone.
</summary>
<dc:date>2024-11-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Assessing UFF and DFT-Tuned Force Fields for Predicting Experimental Isotherms of MOFs</title>
<link href="https://hdl.handle.net/1721.1/165663" rel="alternate"/>
<author>
<name>Cho, Yeongsu</name>
</author>
<author>
<name>Teetz, Jakob</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165663</id>
<updated>2026-04-24T03:07:23Z</updated>
<published>2025-03-18T00:00:00Z</published>
<summary type="text">Assessing UFF and DFT-Tuned Force Fields for Predicting Experimental Isotherms of MOFs
Cho, Yeongsu; Teetz, Jakob; Kulik, Heather J
Metal-organic frameworks (MOFs) are promising materials for gas storage and&#13;
separation applications due to their high tunability and porosity. The rational design of MOFs relies&#13;
on accurate computational modeling, with grand canonical Monte Carlo (GCMC) simulations&#13;
frequently employed to model gas uptake. However, GCMC predictions often deviate from&#13;
experimental observations, limiting their utility in MOF screening. These discrepancies primarily&#13;
arise from three factors: inaccuracies in the force field, neglect of atomic motions, and neglect of&#13;
structural imperfections in MOFs. In this study, we systematically evaluate the impact of the first&#13;
factor on the predictive accuracy of GCMC simulations. We evaluate the widely used Universal&#13;
Force Field (UFF) by comparing its predictions with experimental isotherms for four&#13;
representative adsorbates, H2, CO2, C2H4, and C2H6, across 379 isotherms from 142 MOFs. The&#13;
results show that UFF consistently overestimates gas uptake in GCMC simulations. To isolate the&#13;
contribution of force field inaccuracies to errors in GCMC, we develop a practical scheme for&#13;
fitting force field parameters to DFT-calculated energies for a large set of MOFs. While the refined&#13;
force field improves the accuracy of interatomic interaction energies, its reduction of repulsion,&#13;
combined with UFF’s tendency to overestimate gas uptake, ultimately amplifies the overestimation.&#13;
Our analysis suggests that improving agreement of gas adsorption prediction with experiments&#13;
requires addressing atomic motion and structural defects in MOFs alongside force field&#13;
refinements.
</summary>
<dc:date>2025-03-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Data-Driven Discovery of Water-Stable Metal–Organic Frameworks with High Water Uptake Capacity</title>
<link href="https://hdl.handle.net/1721.1/165662" rel="alternate"/>
<author>
<name>Ball, Akash K</name>
</author>
<author>
<name>Terrones, Gianmarco G</name>
</author>
<author>
<name>Yue, Shuwen</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<id>https://hdl.handle.net/1721.1/165662</id>
<updated>2026-04-24T03:06:37Z</updated>
<published>2025-06-05T00:00:00Z</published>
<summary type="text">Data-Driven Discovery of Water-Stable Metal–Organic Frameworks with High Water Uptake Capacity
Ball, Akash K; Terrones, Gianmarco G; Yue, Shuwen; Kulik, Heather J
Metal-organic frameworks (MOFs) are promising candidate materials for applications that would benefit from precise chemical patterning, such as desalination, but many MOFs suffer from poor stability in water. In addition to water stability, high water uptake capacity in ambient conditions is expected to be necessary for water-related practical applications of MOFs, motivating large-scale search that can only be achieved computationally. Here, we take a combined machine learning and high-throughput screening approach to identify water-stable MOFs with high water uptake capacities. Starting from a subset of previously curated MOFs with experimentally known exceptionally high stability in water, we explore the effect of linker functionalization with 12 diverse hydrophilic functional groups expected to further tune water uptake. For these 736 MOFs, we use grand canonical Monte Carlo (GCMC) simulations to compute their water uptake capacity. We observe strong positive correlations between MOF pore features (e.g., the largest cavity diameter and volumetric pore volume) and water uptake capacity, although we notice breakdowns of such correlations in MOFs with extremely hydrophobic linkers that repel water molecules despite having large pores. Finally, we develop machine learning models to screen new MOFs simultaneously for water stability and water uptake capacity. From a pool of hypothetical and experimental MOFs, we identify 74 promising materials within the domain of applicability of the machine learning models that are predicted to both be water-stable and have high water uptake.
</summary>
<dc:date>2025-06-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Spectral Independence in High-Dimensional Expanders and Applications to the Hardcore Model</title>
<link href="https://hdl.handle.net/1721.1/165661" rel="alternate"/>
<author>
<name>Anari, Nima</name>
</author>
<author>
<name>Liu, Kuikui</name>
</author>
<author>
<name>Gharan, Shayan Oveis</name>
</author>
<id>https://hdl.handle.net/1721.1/165661</id>
<updated>2026-04-24T03:06:51Z</updated>
<published>2024-12-01T00:00:00Z</published>
<summary type="text">Spectral Independence in High-Dimensional Expanders and Applications to the Hardcore Model
Anari, Nima; Liu, Kuikui; Gharan, Shayan Oveis
We say a probability distribution &#120583; is spectrally independent if an associated pairwise influence matrix has a bounded largest eigenvalue for the distribution and all of its conditional distributions. We prove that if &#120583; is spectrally independent, then the corresponding high-dimensional simplicial complex is a local spectral expander. Using a line of recent works on mixing time of high-dimensional walks on simplicial complexes [T. Kaufman and D. Mass, Proceedings of ITCS, 2017, pp. 4:1–4:27; I. Dinur and T. Kaufman, Proceedings of the IEEE 58th Annual Symposium on Foundations of Computer Science, 2017, pp. 974–985; T. Kaufman and I. Oppenheim, Proceedings of APPROX/RANDOM, 2018, pp. 47:1–47:17; V. L. Alev and L. C. Lau, Proceedings of the 52nd Annual ACM Symposium on Theory of Computing, 2020], this implies that the corresponding Glauber dynamics mixes rapidly and generates (approximate) samples from &#120583;. As an application, we show that natural Glauber dynamics mixes rapidly (in polynomial time) to generate a random independent set from the hardcore model up to the uniqueness threshold. This improves the quasi-polynomial running time of Weitz's deterministic correlation decay algorithm [D. Weitz, Proceedings of the 38th Annual ACM Symposium on Theory of Computing, 2006, pp. 140–149] for estimating the hardcore partition function, also answering a long-standing open problem of mixing time of Glauber dynamics [M. Luby and E. Vigoda, Proceedings of the 29th Annual ACM Symposium on Theory of Computing, 1997, pp. 682–687; M. Luby and E. Vigoda, Random Structures Algorithms, 15 (1999), pp. 229–241; M. Dyer and C. Greenhill, J. Algorithms, 35 (2000), pp. 17–49; E. Vigoda, Electron. J. Combin., 8 (2001); C. Efthymiou et al., Proceedings of FOCS, 2016, pp. 704–713].
</summary>
<dc:date>2024-12-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rapid Mixing of Glauber Dynamics up to Uniqueness via Contraction</title>
<link href="https://hdl.handle.net/1721.1/165660" rel="alternate"/>
<author>
<name>Chen, Zongchen</name>
</author>
<author>
<name>Liu, Kuikui</name>
</author>
<author>
<name>Vigoda, Eric</name>
</author>
<id>https://hdl.handle.net/1721.1/165660</id>
<updated>2026-04-24T03:07:16Z</updated>
<published>2023-02-28T00:00:00Z</published>
<summary type="text">Rapid Mixing of Glauber Dynamics up to Uniqueness via Contraction
Chen, Zongchen; Liu, Kuikui; Vigoda, Eric
For general antiferromagnetic 2-spin systems, including the hardcore model on weighted independent sets and the antiferromagnetic Ising model, there is an &#120229;&#120239;&#120243;&#120224;&#120242; for the partition function on graphs of maximum degree Δ when the infinite regular tree lies in the uniqueness region by Li, Lu, and Yin [Correlation Decay up to Uniqueness in Spin Systems, preprint, https://arxiv.org/abs/1111.7064, 2021]. Moreover, in the tree nonuniqueness region, Sly in [Computational transition at the uniqueness threshold, in Proceedings of the 51st Annual IEEE Symposium on Foundations of Computer Science, 2010, pp. 287–296] showed that there is no &#120229;&#120239;&#120241;&#120224;&#120242; to estimate the partition function unless &#120237;&#120239; =&#120241;&#120239;. The algorithmic results follow from the correlation decay approach due to Weitz [Counting independent sets up to the tree threshold, in Proceedings of the 38th Annual ACM Symposium on Theory of Computing, 2006, pp. 140–149] or the polynomial interpolation approach developed by Barvinok [Combinatorics and Complexity of Partition Functions, Springer, 2016]. However, the running time is only polynomial for constant Δ. For the hardcore model, recent work of Anari, Liu, and Oveis Gharan [Spectral independence in high-dimensional expanders and applications to the hardcore model, in Proceedings of the 61st Annual IEEE Symposium on Foundations of Computer Science, 2020, pp. 1319–1330] establishes rapid mixing of the simple single-site Markov chain, known as the Glauber dynamics, in the tree uniqueness region. Our work simplifies their analysis of the Glauber dynamics by considering the total pairwise influence of a fixed vertex &#119907; on other vertices, as opposed to the total influence of other vertices on &#119907;, thereby extending their work to all 2-spin models and improving the mixing time. More important, our proof ties together the three disparate algorithmic approaches: we show that contraction of the so-called tree recursions with a suitable potential function, which is the primary technique for establishing efficiency of Weitz’s correlation decay approach and Barvinok’s polynomial interpolation approach, also establishes rapid mixing of the Glauber dynamics. We emphasize that this connection holds for all 2-spin models (both antiferromagnetic and ferromagnetic), and existing proofs for the correlation decay and polynomial interpolation approaches immediately imply rapid mixing of the Glauber dynamics. Our proof utilizes the fact that the graph partition function is a divisor of the partition function for Weitz’s self-avoiding walk tree. This fact leads to new tools for the analysis of the influence of vertices and may be of independent interest for the study of complex zeros.
</summary>
<dc:date>2023-02-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Convergence of Anisotropic Mesh Adaptation via Metric Optimization</title>
<link href="https://hdl.handle.net/1721.1/165659" rel="alternate"/>
<author>
<name>Carson, Hugh A</name>
</author>
<author>
<name>Allmaras, Steven</name>
</author>
<author>
<name>Galbraith, Marshall</name>
</author>
<author>
<name>Darmofal, David</name>
</author>
<id>https://hdl.handle.net/1721.1/165659</id>
<updated>2026-04-24T03:07:32Z</updated>
<published>2022-06-02T00:00:00Z</published>
<summary type="text">Convergence of Anisotropic Mesh Adaptation via Metric Optimization
Carson, Hugh A; Allmaras, Steven; Galbraith, Marshall; Darmofal, David
Adaptive finite element methods (AFEMs) are an increasingly common means of automatically controlling error in numerical simulations. Proofs of convergence and rate of convergence exist for AFEMs; however, these proofs typically rely upon a nested structure for the sequence of meshes. A metric adaptive finite element method (MAFEM) utilizes the continuous mesh model and instead seeks to optimize a Riemannian metric field for a given cost, from which a mesh is generated. This meshing process results in a sequence of nonnested meshes. In this paper we introduce a proof of convergence for a class of MAFEM, utilizing an optimization statement to relate the error on the sequence of meshes. In addition, we prove that such a sequence of meshes will demonstrate the optimal asymptotic rate of convergence for a given polynomial order. Finally some numerical results demonstrate the performance of the algorithm for a singularly perturbed linear advection diffusion problem.
</summary>
<dc:date>2022-06-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>PD-1 regulates tumor-infiltrating CD8+ T cells in both a cell-intrinsic and a cell-extrinsic fashion</title>
<link href="https://hdl.handle.net/1721.1/165658" rel="alternate"/>
<author>
<name>Pauken, Kristen E</name>
</author>
<author>
<name>Markson, Samuel C</name>
</author>
<author>
<name>Conway, Thomas S</name>
</author>
<author>
<name>Juneja, Vikram R</name>
</author>
<author>
<name>Shahid, Osmaan</name>
</author>
<author>
<name>Burke, Kelly P</name>
</author>
<author>
<name>Rowe, Jared H</name>
</author>
<author>
<name>Nguyen, Thao H</name>
</author>
<author>
<name>Collier, Jenna L</name>
</author>
<author>
<name>Walsh, Jaclyn ML</name>
</author>
<author>
<name>Fung, Megan E</name>
</author>
<author>
<name>Luber, Jacob M</name>
</author>
<author>
<name>Ringel, Alison E</name>
</author>
<author>
<name>Schenkel, Jason M</name>
</author>
<author>
<name>Freeman, Gordon J</name>
</author>
<author>
<name>Haigis, Marcia C</name>
</author>
<author>
<name>Singer, Meromit</name>
</author>
<author>
<name>Sharpe, Arlene H</name>
</author>
<id>https://hdl.handle.net/1721.1/165658</id>
<updated>2026-04-24T03:08:01Z</updated>
<published>2025-10-06T00:00:00Z</published>
<summary type="text">PD-1 regulates tumor-infiltrating CD8+ T cells in both a cell-intrinsic and a cell-extrinsic fashion
Pauken, Kristen E; Markson, Samuel C; Conway, Thomas S; Juneja, Vikram R; Shahid, Osmaan; Burke, Kelly P; Rowe, Jared H; Nguyen, Thao H; Collier, Jenna L; Walsh, Jaclyn ML; Fung, Megan E; Luber, Jacob M; Ringel, Alison E; Schenkel, Jason M; Freeman, Gordon J; Haigis, Marcia C; Singer, Meromit; Sharpe, Arlene H
Although PD-1 inhibitors are FDA-approved for over 25 different cancers, the mechanisms contributing to response remain incompletely understood. To investigate how PD-1–deleted CD8+ T cells influence PD-1–expressing CD8+ T cells in the same tumor microenvironment, we developed an inducible PD-1 knockout (KO) model in which PD-1 is deleted on ∼50% of cells. PD-1 deletion beginning at day 7 after implantation of MC38 tumor cells led to robust tumor control. Remarkably, PD-1–expressing CD8+ T cells in the tumor had increased functionality similar to PD-1 KO CD8+ T cells. Using single-cell RNA-seq and TCR-seq, we found that the major transcriptional changes following PD-1 deletion were shared by PD-1 KO and PD-1–expressing CD8+ T cells, although PD-1 KO clones preferentially expanded. These data suggest PD-1 inhibitors not only exert cell-intrinsic effects but also may promote increased T cell function through non–cell-autonomous mechanisms, which has important implications for design of PD-1–based cancer immunotherapies.
</summary>
<dc:date>2025-10-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>A novel molecular class that recruits HDAC/MECP2 complexes to PU.1 motifs reduces neuroinflammation</title>
<link href="https://hdl.handle.net/1721.1/165657" rel="alternate"/>
<author>
<name>Ralvenius, William T</name>
</author>
<author>
<name>Mungenast, Alison E</name>
</author>
<author>
<name>Woolf, Hannah</name>
</author>
<author>
<name>Huston, Margaret M</name>
</author>
<author>
<name>Gillingham, Tyler Z</name>
</author>
<author>
<name>Godin, Stephen K</name>
</author>
<author>
<name>Penney, Jay</name>
</author>
<author>
<name>Cam, Hugh P</name>
</author>
<author>
<name>Gao, Fan</name>
</author>
<author>
<name>Fernandez, Celia G</name>
</author>
<author>
<name>Czako, Barbara</name>
</author>
<author>
<name>Lightfoot, Yaima</name>
</author>
<author>
<name>Ray, William J</name>
</author>
<author>
<name>Beckmann, Adrian</name>
</author>
<author>
<name>Goate, Alison M</name>
</author>
<author>
<name>Marcora, Edoardo</name>
</author>
<author>
<name>Romero-Molina, Carmen</name>
</author>
<author>
<name>Ayata, Pinar</name>
</author>
<author>
<name>Schaefer, Anne</name>
</author>
<author>
<name>Gjoneska, Elizabeta</name>
</author>
<author>
<name>Tsai, Li-Huei</name>
</author>
<id>https://hdl.handle.net/1721.1/165657</id>
<updated>2026-04-24T03:06:31Z</updated>
<published>2023-11-06T00:00:00Z</published>
<summary type="text">A novel molecular class that recruits HDAC/MECP2 complexes to PU.1 motifs reduces neuroinflammation
Ralvenius, William T; Mungenast, Alison E; Woolf, Hannah; Huston, Margaret M; Gillingham, Tyler Z; Godin, Stephen K; Penney, Jay; Cam, Hugh P; Gao, Fan; Fernandez, Celia G; Czako, Barbara; Lightfoot, Yaima; Ray, William J; Beckmann, Adrian; Goate, Alison M; Marcora, Edoardo; Romero-Molina, Carmen; Ayata, Pinar; Schaefer, Anne; Gjoneska, Elizabeta; Tsai, Li-Huei
Pervasive neuroinflammation occurs in many neurodegenerative diseases, including Alzheimer’s disease (AD). SPI1/PU.1 is a transcription factor located at a genome-wide significant AD-risk locus and its reduced expression is associated with delayed onset of AD. We analyzed single-cell transcriptomic datasets from microglia of human AD patients and found an enrichment of PU.1-binding motifs in the differentially expressed genes. In hippocampal tissues from transgenic mice with neurodegeneration, we found vastly increased genomic PU.1 binding. We then screened for PU.1 inhibitors using a PU.1 reporter cell line and discovered A11, a molecule with anti-inflammatory efficacy and nanomolar potency. A11 regulated genes putatively by recruiting a repressive complex containing MECP2, HDAC1, SIN3A, and DNMT3A to PU.1 motifs, thus representing a novel mechanism and class of molecules. In mouse models of AD, A11 ameliorated neuroinflammation, loss of neuronal integrity, AD pathology, and improved cognitive performance. This study uncovers a novel class of anti-inflammatory molecules with therapeutic potential for neurodegenerative disorders.
</summary>
<dc:date>2023-11-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Remodeling of colon plasma cell repertoire within ulcerative colitis patients</title>
<link href="https://hdl.handle.net/1721.1/165656" rel="alternate"/>
<author>
<name>Scheid, Johannes F</name>
</author>
<author>
<name>Eraslan, Basak</name>
</author>
<author>
<name>Hudak, Andrew</name>
</author>
<author>
<name>Brown, Eric M</name>
</author>
<author>
<name>Sergio, Dallis</name>
</author>
<author>
<name>Delorey, Toni M</name>
</author>
<author>
<name>Phillips, Devan</name>
</author>
<author>
<name>Lefkovith, Ariel</name>
</author>
<author>
<name>Jess, Alison T</name>
</author>
<author>
<name>Duck, Lennard W</name>
</author>
<author>
<name>Elson, Charles O</name>
</author>
<author>
<name>Vlamakis, Hera</name>
</author>
<author>
<name>Plichta, Damian R</name>
</author>
<author>
<name>Deguine, Jacques</name>
</author>
<author>
<name>Ananthakrishnan, Ashwin N</name>
</author>
<author>
<name>Graham, Daniel B</name>
</author>
<author>
<name>Regev, Aviv</name>
</author>
<author>
<name>Xavier, Ramnik J</name>
</author>
<id>https://hdl.handle.net/1721.1/165656</id>
<updated>2026-04-24T03:07:07Z</updated>
<published>2023-04-03T00:00:00Z</published>
<summary type="text">Remodeling of colon plasma cell repertoire within ulcerative colitis patients
Scheid, Johannes F; Eraslan, Basak; Hudak, Andrew; Brown, Eric M; Sergio, Dallis; Delorey, Toni M; Phillips, Devan; Lefkovith, Ariel; Jess, Alison T; Duck, Lennard W; Elson, Charles O; Vlamakis, Hera; Plichta, Damian R; Deguine, Jacques; Ananthakrishnan, Ashwin N; Graham, Daniel B; Regev, Aviv; Xavier, Ramnik J
Plasma cells (PCs) constitute a significant fraction of colonic mucosal cells and contribute to inflammatory infiltrates in ulcerative colitis (UC). While gut PCs secrete bacteria-targeting IgA antibodies, their role in UC pathogenesis is unknown. We performed single-cell V(D)J- and RNA-seq on sorted B cells from the colon of healthy individuals and patients with UC. A large fraction of B cell clones is shared between different colon regions, but inflammation in UC broadly disrupts this landscape, causing transcriptomic changes characterized by an increase in the unfolded protein response (UPR) and antigen presentation genes, clonal expansion, and isotype skewing from IgA1 and IgA2 to IgG1. We also directly expressed and assessed the specificity of 152 mAbs from expanded PC clones. These mAbs show low polyreactivity and autoreactivity and instead target both shared bacterial antigens and specific bacterial strains. Altogether, our results characterize the microbiome-specific colon PC response and how its disruption might contribute to inflammation in UC.
</summary>
<dc:date>2023-04-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>TCR signal strength defines distinct mechanisms of T cell dysfunction and cancer evasion</title>
<link href="https://hdl.handle.net/1721.1/165655" rel="alternate"/>
<author>
<name>Shakiba, Mojdeh</name>
</author>
<author>
<name>Zumbo, Paul</name>
</author>
<author>
<name>Espinosa-Carrasco, Gabriel</name>
</author>
<author>
<name>Menocal, Laura</name>
</author>
<author>
<name>Dündar, Friederike</name>
</author>
<author>
<name>Carson, Sandra E</name>
</author>
<author>
<name>Bruno, Emmanuel M</name>
</author>
<author>
<name>Sanchez-Rivera, Francisco J</name>
</author>
<author>
<name>Lowe, Scott W</name>
</author>
<author>
<name>Camara, Steven</name>
</author>
<author>
<name>Koche, Richard P</name>
</author>
<author>
<name>Reuter, Vincent P</name>
</author>
<author>
<name>Socci, Nicholas D</name>
</author>
<author>
<name>Whitlock, Benjamin</name>
</author>
<author>
<name>Tamzalit, Fella</name>
</author>
<author>
<name>Huse, Morgan</name>
</author>
<author>
<name>Hellmann, Matthew D</name>
</author>
<author>
<name>Wells, Daniel K</name>
</author>
<author>
<name>Defranoux, Nadine A</name>
</author>
<author>
<name>Betel, Doron</name>
</author>
<author>
<name>Philip, Mary</name>
</author>
<author>
<name>Schietinger, Andrea</name>
</author>
<id>https://hdl.handle.net/1721.1/165655</id>
<updated>2026-04-24T03:05:17Z</updated>
<published>2022-02-07T00:00:00Z</published>
<summary type="text">TCR signal strength defines distinct mechanisms of T cell dysfunction and cancer evasion
Shakiba, Mojdeh; Zumbo, Paul; Espinosa-Carrasco, Gabriel; Menocal, Laura; Dündar, Friederike; Carson, Sandra E; Bruno, Emmanuel M; Sanchez-Rivera, Francisco J; Lowe, Scott W; Camara, Steven; Koche, Richard P; Reuter, Vincent P; Socci, Nicholas D; Whitlock, Benjamin; Tamzalit, Fella; Huse, Morgan; Hellmann, Matthew D; Wells, Daniel K; Defranoux, Nadine A; Betel, Doron; Philip, Mary; Schietinger, Andrea
T cell receptor (TCR) signal strength is a key determinant of T cell responses. We developed a cancer mouse model in which tumor-specific CD8 T cells (TST cells) encounter tumor antigens with varying TCR signal strength. High-signal-strength interactions caused TST cells to up-regulate inhibitory receptors (IRs), lose effector function, and establish a dysfunction-associated molecular program. TST cells undergoing low-signal-strength interactions also up-regulated IRs, including PD1, but retained a cell-intrinsic functional state. Surprisingly, neither high- nor low-signal-strength interactions led to tumor control in vivo, revealing two distinct mechanisms by which PD1hi TST cells permit tumor escape; high signal strength drives dysfunction, while low signal strength results in functional inertness, where the signal strength is too low to mediate effective cancer cell killing by functional TST cells. CRISPR-Cas9–mediated fine-tuning of signal strength to an intermediate range improved anti-tumor activity in vivo. Our study defines the role of TCR signal strength in TST cell function, with important implications for T cell–based cancer immunotherapies.
</summary>
<dc:date>2022-02-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Allocation of resources among multiple daughter cells</title>
<link href="https://hdl.handle.net/1721.1/165654" rel="alternate"/>
<author>
<name>Wirshing, Alison CE</name>
</author>
<author>
<name>Alonso-Matilla, Roberto</name>
</author>
<author>
<name>Yan, Michelle</name>
</author>
<author>
<name>Khalid, Samra</name>
</author>
<author>
<name>Colarusso, Analeigha V</name>
</author>
<author>
<name>Odde, David</name>
</author>
<author>
<name>Lew, Daniel J</name>
</author>
<id>https://hdl.handle.net/1721.1/165654</id>
<updated>2026-04-24T03:04:48Z</updated>
<published>2025-11-03T00:00:00Z</published>
<summary type="text">Allocation of resources among multiple daughter cells
Wirshing, Alison CE; Alonso-Matilla, Roberto; Yan, Michelle; Khalid, Samra; Colarusso, Analeigha V; Odde, David; Lew, Daniel J
Cell division commonly produces two daughter cells, but there are many exceptions where large cells produce multiple daughters. Multiple fission of some green algae and bacteria; cellularization during embryogenesis of plants and insects; and growth of Ichthyosporeans, Chytrids, and Apicomplexans all provide variations on this theme. In some yeast species, a large multinucleate mother cell grows multiple buds (daughters) simultaneously. Here, we address how mothers partition growth equally among their buds in the multi-budding yeast Aureobasidium pullulans. Bud growth is directed by actin cable networks that appear to be optimized for even partitioning despite complex cell geometries. Even partitioning does not rely on compensatory mechanisms to adjust bud volumes but rather stems directly from effective equalization of polarity sites. These results reveal how conserved cell polarity and cytoskeletal networks are adapted to build complex morphologies in fungi.
</summary>
<dc:date>2025-11-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mechanisms of nuclear segregation in a multinucleate multibudding yeast</title>
<link href="https://hdl.handle.net/1721.1/165653" rel="alternate"/>
<author>
<name>Petrucco, Claudia A</name>
</author>
<author>
<name>Crocker, Alex W</name>
</author>
<author>
<name>Wirshing, Alison CE</name>
</author>
<author>
<name>Colarusso, Analeigha V</name>
</author>
<author>
<name>Waarts, Maya</name>
</author>
<author>
<name>Gladfelter, Amy S</name>
</author>
<author>
<name>Lew, Daniel J</name>
</author>
<id>https://hdl.handle.net/1721.1/165653</id>
<updated>2026-04-24T03:07:49Z</updated>
<published>2025-11-03T00:00:00Z</published>
<summary type="text">Mechanisms of nuclear segregation in a multinucleate multibudding yeast
Petrucco, Claudia A; Crocker, Alex W; Wirshing, Alison CE; Colarusso, Analeigha V; Waarts, Maya; Gladfelter, Amy S; Lew, Daniel J
Budding yeasts present an especially challenging geometry for segregation of chromosomes, which must be delivered across the narrow mother–bud neck into the bud. Studies in the model yeast Saccharomyces cerevisiae have revealed an elaborate set of mechanisms that selectively orient one mitotic spindle pole toward the bud and then drive spindle elongation along the mother–bud axis, ensuring nuclear segregation between mother and bud. It is unclear how these pathways might be adapted to yield similar precision in more complex cell geometries. Here, we provide the first description of the dynamics of mitosis in a multinucleate, multibudding yeast, Aureobasidium pullulans, and identify many unexpected differences from uninucleate yeasts. Mitotic spindles do not orient along the mother–bud axis prior to anaphase, and accurate nuclear segregation often occurs after spindle disassembly. Cortical Num1–dynein forces pull highly mobile nuclei into buds, and once a nucleus enters a bud, it discourages others from entering, ensuring that most daughters inherit only one nucleus.
</summary>
<dc:date>2025-11-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>A genome-wide arrayed CRISPR screen identifies PLSCR1 as an intrinsic barrier to SARS-CoV-2 entry that recent virus variants have evolved to resist</title>
<link href="https://hdl.handle.net/1721.1/165652" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165652</id>
<updated>2026-04-24T03:05:45Z</updated>
<published>2024-09-24T00:00:00Z</published>
<summary type="text">A genome-wide arrayed CRISPR screen identifies PLSCR1 as an intrinsic barrier to SARS-CoV-2 entry that recent virus variants have evolved to resist
Interferons (IFNs) play a crucial role in the regulation and evolution of host–virus interactions. Here, we conducted a genome-wide arrayed CRISPR knockout screen in the presence and absence of IFN to identify human genes that influence Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection. We then performed an integrated analysis of genes interacting with SARS-CoV-2, drawing from a selection of 67 large-scale studies, including our own. We identified 28 genes of high relevance in both human genetic studies of Coronavirus Disease 2019 (COVID-19) patients and functional genetic screens in cell culture, with many related to the IFN pathway. Among these was the IFN-stimulated gene PLSCR1. PLSCR1 did not require IFN induction to restrict SARS-CoV-2 and did not contribute to IFN signaling. Instead, PLSCR1 specifically restricted spike-mediated SARS-CoV-2 entry. The PLSCR1-mediated restriction was alleviated by TMPRSS2 overexpression, suggesting that PLSCR1 primarily restricts the endocytic entry route. In addition, recent SARS-CoV-2 variants have adapted to circumvent the PLSCR1 barrier via currently undetermined mechanisms. Finally, we investigate the functional effects of PLSCR1 variants present in humans and discuss an association between PLSCR1 and severe COVID-19 reported recently.
</summary>
<dc:date>2024-09-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Visual perception of highly memorable images is mediated by a distributed network of ventral visual regions that enable a late memorability response</title>
<link href="https://hdl.handle.net/1721.1/165651" rel="alternate"/>
<author>
<name>Lahner, Benjamin</name>
</author>
<author>
<name>Mohsenzadeh, Yalda</name>
</author>
<author>
<name>Mullin, Caitlin</name>
</author>
<author>
<name>Oliva, Aude</name>
</author>
<id>https://hdl.handle.net/1721.1/165651</id>
<updated>2026-04-24T03:05:01Z</updated>
<published>2024-04-01T00:00:00Z</published>
<summary type="text">Visual perception of highly memorable images is mediated by a distributed network of ventral visual regions that enable a late memorability response
Lahner, Benjamin; Mohsenzadeh, Yalda; Mullin, Caitlin; Oliva, Aude
Behavioral and neuroscience studies in humans and primates have shown that memorability is an intrinsic property of an image that predicts its strength of encoding into and retrieval from memory. While previous work has independently probed when or where this memorability effect may occur in the human brain, a description of its spatiotemporal dynamics is missing. Here, we used representational similarity analysis (RSA) to combine functional magnetic resonance imaging (fMRI) with source-estimated magnetoencephalography (MEG) to simultaneously measure when and where the human cortex is sensitive to differences in image memorability. Results reveal that visual perception of High Memorable images, compared to Low Memorable images, recruits a set of regions of interest (ROIs) distributed throughout the ventral visual cortex: a late memorability response (from around 300 ms) in early visual cortex (EVC), inferior temporal cortex, lateral occipital cortex, fusiform gyrus, and banks of the superior temporal sulcus. Image memorability magnitude results are represented after high-level feature processing in visual regions and reflected in classical memory regions in the medial temporal lobe (MTL). Our results present, to our knowledge, the first unified spatiotemporal account of visual memorability effect across the human cortex, further supporting the levels-of-processing theory of perception and memory.
</summary>
<dc:date>2024-04-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Recommendations for accelerating open preprint peer review to improve the culture of science</title>
<link href="https://hdl.handle.net/1721.1/165650" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165650</id>
<updated>2026-04-24T03:04:28Z</updated>
<published>2024-02-29T00:00:00Z</published>
<summary type="text">Recommendations for accelerating open preprint peer review to improve the culture of science
Peer review is an important part of the scientific process, but traditional peer review at journals is coming under increased scrutiny for its inefficiency and lack of transparency. As preprints become more widely used and accepted, they raise the possibility of rethinking the peer-review process. Preprints are enabling new forms of peer review that have the potential to be more thorough, inclusive, and collegial than traditional journal peer review, and to thus fundamentally shift the culture of peer review toward constructive collaboration. In this Consensus View, we make a call to action to stakeholders in the community to accelerate the growing momentum of preprint sharing and provide recommendations to empower researchers to provide open and constructive peer review for preprints.
</summary>
<dc:date>2024-02-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Effects of Enhanced Legal Aid in Child Welfare: Evidence from a Randomized Trial of Mi Abogado</title>
<link href="https://hdl.handle.net/1721.1/165649" rel="alternate"/>
<author>
<name>Cooper, Ryan</name>
</author>
<author>
<name>Doyle, Joseph J</name>
</author>
<author>
<name>Hojman, Andrés</name>
</author>
<id>https://hdl.handle.net/1721.1/165649</id>
<updated>2026-04-24T03:06:48Z</updated>
<published>2025-07-01T00:00:00Z</published>
<summary type="text">Effects of Enhanced Legal Aid in Child Welfare: Evidence from a Randomized Trial of Mi Abogado
Cooper, Ryan; Doyle, Joseph J; Hojman, Andrés
Children spend years in foster care, and bureaucratic hurdles can unnecessarily prolong their stays. The Mi Abogado program was introduced in Chile to enhance legal aid for foster children and accelerate family reunification. In a novel approach, the Chilean government randomized the introduction of the program for children living in institutions to evaluate effects on child well-being. Using registry data, we find the program significantly reduced the duration of foster care without increasing subsequent maltreatment and placements. The exposure also decreased criminal justice involvement and improved school attendance. Results suggest that strengthening foster care services can cost-effectively improve child well-being. (JEL I21, I31, J13, K36, O15, O17)
</summary>
<dc:date>2025-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Debt-Inflation Channel of the German (Hyper)Inflation</title>
<link href="https://hdl.handle.net/1721.1/165648" rel="alternate"/>
<author>
<name>Brunnermeier, Markus</name>
</author>
<author>
<name>Correia, Sergio</name>
</author>
<author>
<name>Luck, Stephan</name>
</author>
<author>
<name>Verner, Emil</name>
</author>
<author>
<name>Zimmermann, Tom</name>
</author>
<id>https://hdl.handle.net/1721.1/165648</id>
<updated>2026-04-23T03:05:40Z</updated>
<published>2025-07-01T00:00:00Z</published>
<summary type="text">The Debt-Inflation Channel of the German (Hyper)Inflation
Brunnermeier, Markus; Correia, Sergio; Luck, Stephan; Verner, Emil; Zimmermann, Tom
This paper studies how a large increase in the price level is transmitted to the real economy through firm balance sheets. Using newly digitized macro- and micro-level data from the German inflation of 1919–1923, we show inflation led to a large reduction in real debt burdens and bankruptcies. Firms with higher nominal liabilities at the onset of inflation experienced a larger decline in interest expenses, a relative increase in their equity values, and higher employment during the inflation. The results are consistent with real effects of a debt-inflation channel that operates even when prices and wages are flexible. (JEL D22, E23, E31, G32, N14, N24)
</summary>
<dc:date>2025-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Data, Competition, and Digital Platforms</title>
<link href="https://hdl.handle.net/1721.1/165647" rel="alternate"/>
<author>
<name>Bergemann, Dirk</name>
</author>
<author>
<name>Bonatti, Alessandro</name>
</author>
<id>https://hdl.handle.net/1721.1/165647</id>
<updated>2026-04-23T03:07:07Z</updated>
<published>2024-08-01T00:00:00Z</published>
<summary type="text">Data, Competition, and Digital Platforms
Bergemann, Dirk; Bonatti, Alessandro
A monopolist platform uses data to match heterogeneous consumers with multiproduct sellers. The consumers can purchase the products on the platform or search off the platform. The platform sells targeted ads to sellers that recommend their products to consumers and reveals information to consumers about their match values. The revenue-optimal mechanism is a managed advertising campaign that matches products and preferences efficiently. In equilibrium, sellers offer higher qualities at lower unit prices on than off platform. The platform exploits its information advantage to increase its bargaining power vis-à-vis the sellers. Finally, privacy-respecting data-governance rules can lead to welfare gains for consumers. (JEL D11, D42, D44, D82, D83, M37)
</summary>
<dc:date>2024-08-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dying or Lying? For-Profit Hospices and End-of-Life Care</title>
<link href="https://hdl.handle.net/1721.1/165646" rel="alternate"/>
<author>
<name>Gruber, Jonathan</name>
</author>
<author>
<name>Howard, David H</name>
</author>
<author>
<name>Leder-Luis, Jetson</name>
</author>
<author>
<name>Caputi, Theodore L</name>
</author>
<id>https://hdl.handle.net/1721.1/165646</id>
<updated>2026-04-23T03:05:18Z</updated>
<published>2025-01-01T00:00:00Z</published>
<summary type="text">Dying or Lying? For-Profit Hospices and End-of-Life Care
Gruber, Jonathan; Howard, David H; Leder-Luis, Jetson; Caputi, Theodore L
The Medicare hospice program is intended to provide palliative care to terminal patients, but patients with long stays in hospice are highly profitable, motivating concerns about overuse among the Alzheimer's and Dementia (ADRD) population in the rapidly growing for-profit sector. We provide the first causal estimates of the effect of for-profit hospice on patient spending using the entry of for-profit hospices over 20 years. We find hospice has saved money for Medicare by offsetting other expensive care among ADRD patients. As a result, policies limiting hospice use including revenue caps and antifraud lawsuits are distortionary and deter potentially cost-saving admissions. (JEL H51, I11, I12, I18, J14, L84)
</summary>
<dc:date>2025-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Missing Intercept: A Demand Equivalence Approach</title>
<link href="https://hdl.handle.net/1721.1/165645" rel="alternate"/>
<author>
<name>Wolf, Christian K</name>
</author>
<id>https://hdl.handle.net/1721.1/165645</id>
<updated>2026-04-23T03:06:36Z</updated>
<published>2023-08-01T00:00:00Z</published>
<summary type="text">The Missing Intercept: A Demand Equivalence Approach
Wolf, Christian K
I give conditions under which changes in private spending are accommodated in general equilibrium exactly like changes in aggregate fiscal expenditure. Under such demand equivalence, researchers can use time series evidence on fiscal multipliers to recover the general equilibrium “missing intercept” of shocks to private spending identified in the cross section. Through the lens of this theory, time series estimates of a fiscal multiplier around one suggest a missing intercept close to zero—an observation that I illustrate with an application to the 2008 tax rebates. I also discuss the robustness of this aggregation approach to plausible violations of demand equivalence. (JEL E12, E21, E24, E62, G51, H24, H31)
</summary>
<dc:date>2023-08-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Opportunity Unraveled: Private Information and the Missing Markets for Financing Human Capital</title>
<link href="https://hdl.handle.net/1721.1/165644" rel="alternate"/>
<author>
<name>Herbst, Daniel</name>
</author>
<author>
<name>Hendren, Nathaniel</name>
</author>
<id>https://hdl.handle.net/1721.1/165644</id>
<updated>2026-04-23T03:06:59Z</updated>
<published>2024-07-01T00:00:00Z</published>
<summary type="text">Opportunity Unraveled: Private Information and the Missing Markets for Financing Human Capital
Herbst, Daniel; Hendren, Nathaniel
We examine whether adverse selection has unraveled private markets for equity and state-contingent debt contracts for financing higher education. Using survey data on beliefs, we show a typical college-goer would have to repay $1.64 in present value for every $1 of financing to overcome adverse selection in an equity market. We find that risk-averse college-goers are not willing to accept these terms, so markets unravel. We discuss why moral hazard, biased beliefs, and outside credit options are less likely to explain the absence of these markets. We quantify the welfare gains for subsidizing equity-like contracts that mitigate college-going risks. (JEL D82, D83, G51, I22, I23, I26, J24)
</summary>
<dc:date>2024-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Unobserved-Offers Bargaining</title>
<link href="https://hdl.handle.net/1721.1/165643" rel="alternate"/>
<author>
<name>Wolitzky, Alexander</name>
</author>
<id>https://hdl.handle.net/1721.1/165643</id>
<updated>2026-04-23T03:05:33Z</updated>
<published>2023-01-01T00:00:00Z</published>
<summary type="text">Unobserved-Offers Bargaining
Wolitzky, Alexander
I study ultimatum bargaining with imperfectly observed offers. Imperfectly observed offers must be rejected with positive probability, even when the players’ preferences are common knowledge. Noisier observations imply a greater risk of rejection. In repeated ultimatum bargaining, the responding party can obtain a positive payoff if his signal of the opponent’s offer is also observed by the opponent herself, but not if his signal is private. In alternating-offers bargaining, a player is better off when her own offers are observed more precisely and her opponent’s offers are observed less precisely. Possible applications include international relations, regulation, principal-agency, and product quality provision. (JEL C73, C78, D82)
</summary>
<dc:date>2023-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Conflict and Intergroup Trade: Evidence from the 2014 Russia-Ukraine Crisis</title>
<link href="https://hdl.handle.net/1721.1/165642" rel="alternate"/>
<author>
<name>Korovkin, Vasily</name>
</author>
<author>
<name>Makarin, Alexey</name>
</author>
<id>https://hdl.handle.net/1721.1/165642</id>
<updated>2026-04-23T03:06:42Z</updated>
<published>2023-01-01T00:00:00Z</published>
<summary type="text">Conflict and Intergroup Trade: Evidence from the 2014 Russia-Ukraine Crisis
Korovkin, Vasily; Makarin, Alexey
Does armed conflict reduce trade, even in noncombat areas, through the destruction of intergroup social capital? We analyze Ukrainian trade transactions before and after the 2014 Russia-Ukraine conflict. In a difference-in-differences framework, we find that Ukrainian firms from districts with fewer ethnic Russians experienced a deeper decline in trade with Russia. This decline is economically significant, persistent, and can be explained by erosion of intergroup trust. Affected Ukrainian firms suffered a decrease in performance and diverted trade to other countries. Our results suggest that, through social effects, conflict can be economically damaging even away from combat areas. (JEL D74, F14, F51, J15, P31, P33, Z13)
</summary>
<dc:date>2023-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Heterogeneous Global Booms and Busts</title>
<link href="https://hdl.handle.net/1721.1/165641" rel="alternate"/>
<author>
<name>Farboodi, Maryam</name>
</author>
<author>
<name>Kondor, Péter</name>
</author>
<id>https://hdl.handle.net/1721.1/165641</id>
<updated>2026-04-23T03:06:12Z</updated>
<published>2022-07-01T00:00:00Z</published>
<summary type="text">Heterogeneous Global Booms and Busts
Farboodi, Maryam; Kondor, Péter
We investigate the heterogeneous boom and bust patterns across countries that emerge as a result of global shocks. Our analysis sheds light on the emergence of core and periphery countries, and the joint determination of the depth of recessions and tightness of credit across countries. The model implies that interest rates are similar across core and periphery countries in booms, with larger credit and output growth in periphery countries. However, a common global shock that leads to a credit crunch across the globe gives rise to a sharper spike in interest rates and a deeper recession in periphery countries, while a credit flight to the core alleviates the adverse consequences in these countries. (JEL E21, E32, E43, E44, F44, G01, G15)
</summary>
<dc:date>2022-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Many but not all deep neural network audio models capture brain responses and exhibit correspondence between model stages and brain regions</title>
<link href="https://hdl.handle.net/1721.1/165640" rel="alternate"/>
<author>
<name>Tuckute, Greta</name>
</author>
<author>
<name>Feather, Jenelle</name>
</author>
<author>
<name>Boebinger, Dana</name>
</author>
<author>
<name>McDermott, Josh H</name>
</author>
<id>https://hdl.handle.net/1721.1/165640</id>
<updated>2026-04-23T03:07:36Z</updated>
<published>2023-12-13T00:00:00Z</published>
<summary type="text">Many but not all deep neural network audio models capture brain responses and exhibit correspondence between model stages and brain regions
Tuckute, Greta; Feather, Jenelle; Boebinger, Dana; McDermott, Josh H
Models that predict brain responses to stimuli provide one measure of understanding of a sensory system and have many potential applications in science and engineering. Deep artificial neural networks have emerged as the leading such predictive models of the visual system but are less explored in audition. Prior work provided examples of audio-trained neural networks that produced good predictions of auditory cortical fMRI responses and exhibited correspondence between model stages and brain regions, but left it unclear whether these results generalize to other neural network models and, thus, how to further improve models in this domain. We evaluated model-brain correspondence for publicly available audio neural network models along with in-house models trained on 4 different tasks. Most tested models outpredicted standard spectromporal filter-bank models of auditory cortex and exhibited systematic model-brain correspondence: Middle stages best predicted primary auditory cortex, while deep stages best predicted non-primary cortex. However, some state-of-the-art models produced substantially worse brain predictions. Models trained to recognize speech in background noise produced better brain predictions than models trained to recognize speech in quiet, potentially because hearing in noise imposes constraints on biological auditory representations. The training task influenced the prediction quality for specific cortical tuning properties, with best overall predictions resulting from models trained on multiple tasks. The results generally support the promise of deep neural networks as models of audition, though they also indicate that current models do not explain auditory cortical responses in their entirety.
</summary>
<dc:date>2023-12-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hypoxia extends lifespan and neurological function in a mouse model of aging</title>
<link href="https://hdl.handle.net/1721.1/165639" rel="alternate"/>
<author>
<name>Rogers, Robert S</name>
</author>
<author>
<name>Wang, Hong</name>
</author>
<author>
<name>Durham, Timothy J</name>
</author>
<author>
<name>Stefely, Jonathan A</name>
</author>
<author>
<name>Owiti, Norah A</name>
</author>
<author>
<name>Markhard, Andrew L</name>
</author>
<author>
<name>Sandler, Lev</name>
</author>
<author>
<name>To, Tsz-Leung</name>
</author>
<author>
<name>Mootha, Vamsi K</name>
</author>
<id>https://hdl.handle.net/1721.1/165639</id>
<updated>2026-04-23T03:07:04Z</updated>
<published>2023-05-23T00:00:00Z</published>
<summary type="text">Hypoxia extends lifespan and neurological function in a mouse model of aging
Rogers, Robert S; Wang, Hong; Durham, Timothy J; Stefely, Jonathan A; Owiti, Norah A; Markhard, Andrew L; Sandler, Lev; To, Tsz-Leung; Mootha, Vamsi K
There is widespread interest in identifying interventions that extend healthy lifespan. Chronic continuous hypoxia delays the onset of replicative senescence in cultured cells and extends lifespan in yeast, nematodes, and fruit flies. Here, we asked whether chronic continuous hypoxia is beneficial in mammalian aging. We utilized the Ercc1 Δ/- mouse model of accelerated aging given that these mice are born developmentally normal but exhibit anatomic, physiological, and biochemical features of aging across multiple organs. Importantly, they exhibit a shortened lifespan that is extended by dietary restriction, the most potent aging intervention across many organisms. We report that chronic continuous 11% oxygen commenced at 4 weeks of age extends lifespan by 50% and delays the onset of neurological debility in Ercc1 Δ/- mice. Chronic continuous hypoxia did not impact food intake and did not significantly affect markers of DNA damage or senescence, suggesting that hypoxia did not simply alleviate the proximal effects of the Ercc1 mutation, but rather acted downstream via unknown mechanisms. To the best of our knowledge, this is the first study to demonstrate that “oxygen restriction” can extend lifespan in a mammalian model of aging.
</summary>
<dc:date>2023-05-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shared biophysical mechanisms determine early biofilm architecture development across different bacterial species</title>
<link href="https://hdl.handle.net/1721.1/165638" rel="alternate"/>
<author>
<name>Jeckel, Hannah</name>
</author>
<author>
<name>Díaz-Pascual, Francisco</name>
</author>
<author>
<name>Skinner, Dominic J</name>
</author>
<author>
<name>Song, Boya</name>
</author>
<author>
<name>Jiménez-Siebert, Eva</name>
</author>
<author>
<name>Strenger, Kerstin</name>
</author>
<author>
<name>Jelli, Eric</name>
</author>
<author>
<name>Vaidya, Sanika</name>
</author>
<author>
<name>Dunkel, Jörn</name>
</author>
<author>
<name>Drescher, Knut</name>
</author>
<id>https://hdl.handle.net/1721.1/165638</id>
<updated>2026-04-23T03:06:46Z</updated>
<published>2022-10-26T00:00:00Z</published>
<summary type="text">Shared biophysical mechanisms determine early biofilm architecture development across different bacterial species
Jeckel, Hannah; Díaz-Pascual, Francisco; Skinner, Dominic J; Song, Boya; Jiménez-Siebert, Eva; Strenger, Kerstin; Jelli, Eric; Vaidya, Sanika; Dunkel, Jörn; Drescher, Knut
Bacterial biofilms are among the most abundant multicellular structures on Earth and play essential roles in a wide range of ecological, medical, and industrial processes. However, general principles that govern the emergence of biofilm architecture across different species remain unknown. Here, we combine experiments, simulations, and statistical analysis to identify shared biophysical mechanisms that determine early biofilm architecture development at the single-cell level, for the species Vibrio cholerae, Escherichia coli, Salmonella enterica, and Pseudomonas aeruginosa grown as microcolonies in flow chambers. Our data-driven analysis reveals that despite the many molecular differences between these species, the biofilm architecture differences can be described by only 2 control parameters: cellular aspect ratio and cell density. Further experiments using single-species mutants for which the cell aspect ratio and the cell density are systematically varied, and mechanistic simulations show that tuning these 2 control parameters reproduces biofilm architectures of different species. Altogether, our results show that biofilm microcolony architecture is determined by mechanical cell–cell interactions, which are conserved across different species.
</summary>
<dc:date>2022-10-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Editorial: Novel methods to advance diagnostic and treatment value of medical imaging for cardiovascular disease</title>
<link href="https://hdl.handle.net/1721.1/165637" rel="alternate"/>
<author>
<name>Keshavarz-Motamed, Zahra</name>
</author>
<author>
<name>Del Alamo, Juan C</name>
</author>
<author>
<name>Bluestein, Danny</name>
</author>
<author>
<name>Edelman, Elazer R</name>
</author>
<author>
<name>Wentzel, Jolanda J</name>
</author>
<id>https://hdl.handle.net/1721.1/165637</id>
<updated>2026-04-23T03:05:45Z</updated>
<published>2022-08-30T00:00:00Z</published>
<summary type="text">Editorial: Novel methods to advance diagnostic and treatment value of medical imaging for cardiovascular disease
Keshavarz-Motamed, Zahra; Del Alamo, Juan C; Bluestein, Danny; Edelman, Elazer R; Wentzel, Jolanda J
The use of medical imaging has substantially increased over the past decade, thanks to the technological advancements evident from the dramatic improvement in the sensitivity and spatial resolution of imaging modalities. Cardiovascular imaging has been at a crossroads regarding technological advances, with a shift in focus from single-modality diagnosis to an integrated multimodality approach that can provide comprehensive assessments of morphology, pathophysiology, and disease biology to stratify the patient risk and guide therapies. The wide inter-subject variability in cardiovascular anatomy and pathophysiology urges the design of personalized patient management, which can highly benefit from clinical imaging technologies. The remarkable advances in medical imaging have sparked the development of new image processing algorithms and image-based simulation tools. In addition to providing comprehensive diagnostic information, some tools can even predict intervention outcomes, thereby enabling personalized intervention planning. This Research Topic, Novel Methods to Advance Diagnostic and Treatment Value of Medical Imaging for Cardiovascular Disease, focuses on tools that augment the power of medical imaging to provide detailed quantification of cardiovascular disease. Here, we present a Research Topic of 21 research articles that provide the reader with information regarding recent advancements in medical imaging improving diagnosis, prediction, monitoring, and treatment of cardiovascular disease.
</summary>
<dc:date>2022-08-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Light-regulated gene expression in Bacteria: Fundamentals, advances, and perspectives</title>
<link href="https://hdl.handle.net/1721.1/165636" rel="alternate"/>
<author>
<name>Ohlendorf, Robert</name>
</author>
<author>
<name>Möglich, Andreas</name>
</author>
<id>https://hdl.handle.net/1721.1/165636</id>
<updated>2026-04-23T03:07:09Z</updated>
<published>2022-10-14T00:00:00Z</published>
<summary type="text">Light-regulated gene expression in Bacteria: Fundamentals, advances, and perspectives
Ohlendorf, Robert; Möglich, Andreas
Numerous photoreceptors and genetic circuits emerged over the past two decades and now enable the light-dependent i.e., optogenetic, regulation of gene expression in bacteria. Prompted by light cues in the near-ultraviolet to near-infrared region of the electromagnetic spectrum, gene expression can be up- or downregulated stringently, reversibly, non-invasively, and with precision in space and time. Here, we survey the underlying principles, available options, and prominent examples of optogenetically regulated gene expression in bacteria. While transcription initiation and elongation remain most important for optogenetic intervention, other processes e.g., translation and downstream events, were also rendered light-dependent. The optogenetic control of bacterial expression predominantly employs but three fundamental strategies: light-sensitive two-component systems, oligomerization reactions, and second-messenger signaling. Certain optogenetic circuits moved beyond the proof-of-principle and stood the test of practice. They enable unprecedented applications in three major areas. First, light-dependent expression underpins novel concepts and strategies for enhanced yields in microbial production processes. Second, light-responsive bacteria can be optogenetically stimulated while residing within the bodies of animals, thus prompting the secretion of compounds that grant health benefits to the animal host. Third, optogenetics allows the generation of precisely structured, novel biomaterials. These applications jointly testify to the maturity of the optogenetic approach and serve as blueprints bound to inspire and template innovative use cases of light-regulated gene expression in bacteria. Researchers pursuing these lines can choose from an ever-growing, versatile, and efficient toolkit of optogenetic circuits.
</summary>
<dc:date>2022-10-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Intervertebral Disc-on-a-Chip as Advanced In Vitro Model for Mechanobiology Research and Drug Testing: A Review and Perspective</title>
<link href="https://hdl.handle.net/1721.1/165635" rel="alternate"/>
<author>
<name>Mainardi, Andrea</name>
</author>
<author>
<name>Cambria, Elena</name>
</author>
<author>
<name>Occhetta, Paola</name>
</author>
<author>
<name>Martin, Ivan</name>
</author>
<author>
<name>Barbero, Andrea</name>
</author>
<author>
<name>Schären, Stefan</name>
</author>
<author>
<name>Mehrkens, Arne</name>
</author>
<author>
<name>Krupkova, Olga</name>
</author>
<id>https://hdl.handle.net/1721.1/165635</id>
<updated>2026-04-23T03:06:10Z</updated>
<published>2022-01-27T00:00:00Z</published>
<summary type="text">Intervertebral Disc-on-a-Chip as Advanced In Vitro Model for Mechanobiology Research and Drug Testing: A Review and Perspective
Mainardi, Andrea; Cambria, Elena; Occhetta, Paola; Martin, Ivan; Barbero, Andrea; Schären, Stefan; Mehrkens, Arne; Krupkova, Olga
Discogenic back pain is one of the most diffused musculoskeletal pathologies and a hurdle to a good quality of life for millions of people. Existing therapeutic options are exclusively directed at reducing symptoms, not at targeting the underlying, still poorly understood, degenerative processes. Common intervertebral disc (IVD) disease models still do not fully replicate the course of degenerative IVD disease. Advanced disease models that incorporate mechanical loading are needed to investigate pathological causes and processes, as well as to identify therapeutic targets. Organs-on-chip (OoC) are microfluidic-based devices that aim at recapitulating tissue functions in vitro by introducing key features of the tissue microenvironment (e.g., 3D architecture, soluble signals and mechanical conditioning). In this review we analyze and depict existing OoC platforms used to investigate pathological alterations of IVD cells/tissues and discuss their benefits and limitations. Starting from the consideration that mechanobiology plays a pivotal role in both IVD homeostasis and degeneration, we then focus on OoC settings enabling to recapitulate physiological or aberrant mechanical loading, in conjunction with other relevant features (such as inflammation). Finally, we propose our view on design criteria for IVD-on-a-chip systems, offering a future perspective to model IVD mechanobiology.
</summary>
<dc:date>2022-01-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Construction of an IS-Free Corynebacterium glutamicum ATCC 13 032 Chassis Strain and Random Mutagenesis Using the Endogenous ISCg1 Transposase</title>
<link href="https://hdl.handle.net/1721.1/165634" rel="alternate"/>
<author>
<name>Linder, Marten</name>
</author>
<author>
<name>Haak, Markus</name>
</author>
<author>
<name>Botes, Angela</name>
</author>
<author>
<name>Kalinowski, Jörn</name>
</author>
<author>
<name>Rückert, Christian</name>
</author>
<id>https://hdl.handle.net/1721.1/165634</id>
<updated>2026-04-23T03:05:57Z</updated>
<published>2021-12-15T00:00:00Z</published>
<summary type="text">Construction of an IS-Free Corynebacterium glutamicum ATCC 13 032 Chassis Strain and Random Mutagenesis Using the Endogenous ISCg1 Transposase
Linder, Marten; Haak, Markus; Botes, Angela; Kalinowski, Jörn; Rückert, Christian
Mobile genetic elements (MGEs) contribute to instability of the host genome and plasmids. Previously, removal of the prophages in the industrial amino acid producer Corynebacterium glutamicum ATCC 13 032 resulted in strain MB001 which showed better survival under stress conditions and increased transformability. Still, eight families of Insertion Sequence (IS) elements with 27 potentially active members remain in MB001, two of which were demonstrated to be detrimental in biotechnological processes. In this study, systematical deletion of all complete IS elements in MB001 resulted in the MGE-free strain CR101. CR101 shows growth characteristics identical to the wildtype and the increased transformability of MB001. Due to its improved genome stability, we consider this strain to be an optimal host for basic research and biotechnology. As a “zero-background” host, it is also an ideal basis to study C. glutamicum IS elements. Re-sequencing of CR101 revealed that only five spontaneous point mutations had occurred during the construction process, highlighting the low mutation rate of C. glutamicum on the nucleotide level. In a second step, we developed an easily applicable ISCg1-based transposon mutagenesis system to randomly transpose a selectable marker. For optimal plasmid stability during cloning in Escherichia coli, the system utilizes a genetic switch based on the phage integrase Bxb1. Use of this integrase revealed the presence of a functional attB site in the C. glutamicum genome. To avoid cross-talk with our system and increase ease-of-use, we removed the attB site and also inserted the Bxb1 encoding gene into the chromosome of CR101. Successful insertion of single markers was verified by sequencing randomly selected mutants. Sequencing pooled mutant libraries revealed only a weak target site specificity, seemingly random distribution of insertion sites and no general strand bias. The resulting strain, ML103, together with plasmid pML10 provides a easily customizable system for random mutagenesis in an otherwise genomically stable C. glutamicum. Taken together, the MGE-free C. glutamicum strain CR101, the derivative ML103, and the plasmid pML10 provide a useful set of tools to study C. glutamicum in the future.
</summary>
<dc:date>2021-12-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Deep neural network enabled active metasurface embedded design</title>
<link href="https://hdl.handle.net/1721.1/165633" rel="alternate"/>
<author>
<name>An, Sensong</name>
</author>
<author>
<name>Zheng, Bowen</name>
</author>
<author>
<name>Julian, Matthew</name>
</author>
<author>
<name>Williams, Calum</name>
</author>
<author>
<name>Tang, Hong</name>
</author>
<author>
<name>Gu, Tian</name>
</author>
<author>
<name>Zhang, Hualiang</name>
</author>
<author>
<name>Kim, Hyun Jung</name>
</author>
<author>
<name>Hu, Juejun</name>
</author>
<id>https://hdl.handle.net/1721.1/165633</id>
<updated>2026-04-23T03:05:12Z</updated>
<published>2022-06-10T00:00:00Z</published>
<summary type="text">Deep neural network enabled active metasurface embedded design
An, Sensong; Zheng, Bowen; Julian, Matthew; Williams, Calum; Tang, Hong; Gu, Tian; Zhang, Hualiang; Kim, Hyun Jung; Hu, Juejun
In this paper, we propose a deep learning approach for forward modeling and inverse design of photonic devices containing embedded active metasurface structures. In particular, we demonstrate that combining neural network design of metasurfaces with scattering matrix-based optimization significantly simplifies the computational overhead while facilitating accurate objective-driven design. As an example, we apply our approach to the design of a continuously tunable bandpass filter in the mid-wave infrared, featuring narrow passband (∼10 nm), high quality factors (Q-factors ∼ 102), and large out-of-band rejection (optical density ≥ 3). The design consists of an optical phase-change material Ge2Sb2Se4Te (GSST) metasurface atop a silicon heater sandwiched between two distributed Bragg reflectors (DBRs). The proposed design approach can be generalized to the modeling and inverse design of arbitrary response photonic devices incorporating active metasurfaces.
</summary>
<dc:date>2022-06-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Microresonator frequency comb based high‐speed transmission of intensity modulated direct detection data</title>
<link href="https://hdl.handle.net/1721.1/165632" rel="alternate"/>
<author>
<name>Xing, Peng</name>
</author>
<author>
<name>Chen, George Fengrong</name>
</author>
<author>
<name>Gao, Hongwei</name>
</author>
<author>
<name>Chia, Xavier</name>
</author>
<author>
<name>Agarwal, Anuradha M</name>
</author>
<author>
<name>Kimerling, Lionel C</name>
</author>
<author>
<name>Tan, Dawn TH</name>
</author>
<id>https://hdl.handle.net/1721.1/165632</id>
<updated>2026-04-23T03:06:22Z</updated>
<published>2022-06-16T00:00:00Z</published>
<summary type="text">Microresonator frequency comb based high‐speed transmission of intensity modulated direct detection data
Xing, Peng; Chen, George Fengrong; Gao, Hongwei; Chia, Xavier; Agarwal, Anuradha M; Kimerling, Lionel C; Tan, Dawn TH
Globally, the long-haul transmission of ultra-high bandwidth data is enabled through coherent communications. Driven by the rapid pace of growth in interconnectivity over the last decade, long-haul data transmission has reached capacities on the order of tens to hundreds of terabits per second, over fiber reaches which may span thousands of kilometers. Data center communications operate in regimes featuring shorter reaches and higher cost sensitivity. While integrated microresonator frequency combs are poised to revolutionize light sources used for high-speed data transmission over fiber, recent progress has focused largely on coherent detection schemes. Furthermore, though state-of-the-art intensity modulators are advancing in speed, it has not been demonstrated in the literature if microresonator-based comb lines can accommodate higher intensity modulated direction data (IMDD) line rates in tandem with these advancements. In this manuscript, we demonstrate the use of microresonator frequency combs pumped with a single laser for the transmission of high-speed IMDD data. We demonstrate error-free transmission of 30 Gbs−1 per comb non-return-to-zero data over fiber lengths of 6 km, as well as bit error rates under the forward error correction limit for propagation through 20 km of optical fiber. 60 Gbs−1 and 42 Gbs−1 pulse modulation amplitude 4 (PAM4) data modulated on each frequency comb line is further quantified to have a bit error rate under the forward error correction limit for fiber reaches of up to 6 km and 20 km respectively. The results showcase CMOS-compatible microresonator frequency comb modulated using IMDD formats as a promising technology for high-speed transmission in the data center transceiver industry.
</summary>
<dc:date>2022-06-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reduced Deep Convection and Bottom Water Formation Due To Antarctic Meltwater in a Multi‐Model Ensemble</title>
<link href="https://hdl.handle.net/1721.1/165631" rel="alternate"/>
<author>
<name>Chen, Jia‐Jia</name>
</author>
<author>
<name>Swart, Neil C</name>
</author>
<author>
<name>Beadling, Rebecca</name>
</author>
<author>
<name>Cheng, Xuhua</name>
</author>
<author>
<name>Hattermann, Tore</name>
</author>
<author>
<name>Jüling, André</name>
</author>
<author>
<name>Li, Qian</name>
</author>
<author>
<name>Marshall, John</name>
</author>
<author>
<name>Martin, Torge</name>
</author>
<author>
<name>Muilwijk, Morven</name>
</author>
<author>
<name>Pauling, Andrew G</name>
</author>
<author>
<name>Purich, Ariaan</name>
</author>
<author>
<name>Smith, Inga J</name>
</author>
<author>
<name>Thomas, Max</name>
</author>
<id>https://hdl.handle.net/1721.1/165631</id>
<updated>2026-04-23T03:05:51Z</updated>
<published>2023-12-19T00:00:00Z</published>
<summary type="text">Reduced Deep Convection and Bottom Water Formation Due To Antarctic Meltwater in a Multi‐Model Ensemble
Chen, Jia‐Jia; Swart, Neil C; Beadling, Rebecca; Cheng, Xuhua; Hattermann, Tore; Jüling, André; Li, Qian; Marshall, John; Martin, Torge; Muilwijk, Morven; Pauling, Andrew G; Purich, Ariaan; Smith, Inga J; Thomas, Max
The additional water from the Antarctic ice sheet and ice shelves due to climate‐induced melt can impact ocean circulation and global climate. However, the major processes driving melt are not adequately represented in Coupled Model Intercomparison Project phase 6 (CMIP6) models. Here, we analyze a novel multi‐model ensemble of CMIP6 models with consistent meltwater addition to examine the robustness of the modeled response to meltwater, which has not been possible in previous single‐model studies. Antarctic meltwater addition induces a substantial weakening of open‐ocean deep convection. Additionally, Antarctic Bottom Water warms, its volume contracts, and the sea surface cools. However, the magnitude of the reduction varies greatly across models, with differing anomalies correlated with their respective mean‐state climatology, indicating the state‐dependency of the climate response to meltwater. A better representation of the Southern Ocean mean state is necessary for narrowing the inter‐model spread of response to Antarctic meltwater.
</summary>
<dc:date>2023-12-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bias formulas for violations of proximal identification assumptions in a linear structural equation model</title>
<link href="https://hdl.handle.net/1721.1/165630" rel="alternate"/>
<author>
<name>Cobzaru, Raluca</name>
</author>
<author>
<name>Welsch, Roy</name>
</author>
<author>
<name>Finkelstein, Stan</name>
</author>
<author>
<name>Ng, Kenney</name>
</author>
<author>
<name>Shahn, Zach</name>
</author>
<id>https://hdl.handle.net/1721.1/165630</id>
<updated>2026-04-23T03:05:03Z</updated>
<published>2024-06-19T00:00:00Z</published>
<summary type="text">Bias formulas for violations of proximal identification assumptions in a linear structural equation model
Cobzaru, Raluca; Welsch, Roy; Finkelstein, Stan; Ng, Kenney; Shahn, Zach
Causal inference from observational data often rests on the unverifiable assumption of no unmeasured confounding. Recently, Tchetgen Tchetgen and colleagues have introduced proximal inference to leverage negative control outcomes and exposures as proxies to adjust for bias from unmeasured confounding. However, some of the key assumptions that proximal inference relies on are themselves empirically untestable. In addition, the impact of violations of proximal inference assumptions on the bias of effect estimates is not well understood. In this article, we derive bias formulas for proximal inference estimators under a linear structural equation model. These results are a first step toward sensitivity analysis and quantitative bias analysis of proximal inference estimators. While limited to a particular family of data generating processes, our results may offer some more general insight into the behavior of proximal inference estimators.
</summary>
<dc:date>2024-06-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Nobel Prize Winner’s Life of Mentoring</title>
<link href="https://hdl.handle.net/1721.1/165629" rel="alternate"/>
<author>
<name>Rowe, Mary P.</name>
</author>
<id>https://hdl.handle.net/1721.1/165629</id>
<updated>2026-04-22T03:01:01Z</updated>
<published>2023-07-01T00:00:00Z</published>
<summary type="text">A Nobel Prize Winner’s Life of Mentoring
Rowe, Mary P.
Former MIT ombuds Mary P. Rowe describes lessons learned about mentoring from a conversation with Dr. John Goodenough, who later won a Nobel Prize.
</summary>
<dc:date>2023-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Using Operationally Useful Data to Communicate Ombuds Value and Effectiveness</title>
<link href="https://hdl.handle.net/1721.1/165628" rel="alternate"/>
<author>
<name>Rowe, Mary</name>
</author>
<id>https://hdl.handle.net/1721.1/165628</id>
<updated>2026-04-22T03:00:55Z</updated>
<published>2026-01-01T00:00:00Z</published>
<summary type="text">Using Operationally Useful Data to Communicate Ombuds Value and Effectiveness
Rowe, Mary
Why keep data? The answer may be different for every organizational ombuds professional (OO). When considering what data to collect about their work, each OO will wish to learn the interests of their constituents and then try to meet the needs of their visitors, organization, and leadership, as well as their own needs. &#13;
&#13;
The statistical data collected by organizational ombuds (OOs) represent a major source of informal power for OOs to help constituents. Data also can demonstrate the OO’s value for constituents—including the employer. Data can help every OO identify how they can be more effective. Data can also help to show OO expertise in many vital areas of management where AI faces limitations in comparison to humans.
</summary>
<dc:date>2026-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Imaging the Spatiotemporal Evolution of Plate Coupling With Interferometric Radar (InSAR) in the Hikurangi Subduction Zone</title>
<link href="https://hdl.handle.net/1721.1/165627" rel="alternate"/>
<author>
<name>Maubant, L</name>
</author>
<author>
<name>Frank, WB</name>
</author>
<author>
<name>Wallace, LM</name>
</author>
<author>
<name>Williams, CA</name>
</author>
<author>
<name>Hamling, I</name>
</author>
<id>https://hdl.handle.net/1721.1/165627</id>
<updated>2026-04-22T03:14:03Z</updated>
<published>2023-10-03T00:00:00Z</published>
<summary type="text">Imaging the Spatiotemporal Evolution of Plate Coupling With Interferometric Radar (InSAR) in the Hikurangi Subduction Zone
Maubant, L; Frank, WB; Wallace, LM; Williams, CA; Hamling, I
The coupling at the interface between tectonic plates is a key geophysical parameter to capture the frictional locking across plate boundaries and provides a means to estimate where tectonic strain is accumulating through time. Here, we use both interferometric radar (InSAR) and Global Navigation Satellite System (GNSS) data to investigate the plate coupling of the Hikurangi subduction zone beneath the North Island of New Zealand, where multiple slow slip cycles are superimposed on the long‐term loading. We estimate the plate coupling across the subduction zone over three multi‐year observational periods targeting different stages of the slow slip cycle. Our results highlight the importance of the observational time period when interpreting coupling maps, emphasizing the temporal variability of plate coupling. Leveraging multiple geodetic data sets, we demonstrate how InSAR provides powerful constraints on the spatial resolution of both plate coupling and slow fault slip, even in a region where a dense GNSS network exists.
</summary>
<dc:date>2023-10-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Land and Atmosphere Precursors to Fuel Loading, Wildfire Ignition and Post‐Fire Recovery</title>
<link href="https://hdl.handle.net/1721.1/165626" rel="alternate"/>
<author>
<name>Alizadeh, Mohammad Reza</name>
</author>
<author>
<name>Adamowski, Jan</name>
</author>
<author>
<name>Entekhabi, Dara</name>
</author>
<id>https://hdl.handle.net/1721.1/165626</id>
<updated>2026-04-22T03:13:19Z</updated>
<published>2024-01-19T00:00:00Z</published>
<summary type="text">Land and Atmosphere Precursors to Fuel Loading, Wildfire Ignition and Post‐Fire Recovery
Alizadeh, Mohammad Reza; Adamowski, Jan; Entekhabi, Dara
Land surface‐atmosphere coupling and soil moisture memory are shown to combine into a distinct temporal pattern for wildfire incidents across the western United States. We investigate the dynamic interplay of observed soil moisture, vegetation water content, and atmospheric dryness in relation to fuel loading, fire ignition and post‐fire recovery. We find that positive soil moisture anomalies around 5 months before fire ignition increase biomass growth in the subsequent months, thereby shaping fire‐prone vegetation conditions. Then, concurrent decrease in soil moisture, vegetation dehydration, and atmospheric dryness collectively contribute to the occurrence of fire ignition events. This is followed by a rapid recovery in both soil and atmospheric moisture within several weeks after the fire incidents. Our findings provide insights into understanding of wildfire ignition dynamics, supporting fire modeling and enabling improved fire predictions, early warning systems, and mitigation strategies.
</summary>
<dc:date>2024-01-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Estimating Resistance to Digital Technology Infusion: A Multi-Method Modeling Approach</title>
<link href="https://hdl.handle.net/1721.1/165625" rel="alternate"/>
<author>
<name>Marsh, Delaney C.</name>
</author>
<id>https://hdl.handle.net/1721.1/165625</id>
<updated>2026-04-22T03:09:18Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Estimating Resistance to Digital Technology Infusion: A Multi-Method Modeling Approach
Marsh, Delaney C.
As technology continues to evolve, it continuously alters how work is done, how people interact, and how decisions are made. However, these transformations commonly face a critical barrier to successful implementation: resistance. Resistance arises at both the individual and organizational levels, often resulting in delays or stagnation in technology initiatives. This thesis explores how resistance might be quantitatively modeled in order to facilitate more successful technology deployment. &#13;
&#13;
Building on insights from an extensive literature review, two methods are proposed that capture the common constructs present throughout the literature as well as how systems thinking can be applied. The first method leverages Large Language Models (LLMs) to perform a sentiment analysis on qualitative data, extracting sentiment related to key constructs that shape resistance attitude and behavior. The second method applies systems architecture tools and principles to analyze changes to workflows and interactions resulting from the proposed technology initiative, developing system-based proxies for resistance constructs. While both methods yield overall resistance estimates, they also generate valuable insights that can be used to strengthen change management and transition plans. &#13;
&#13;
A case study within a large global corporation, featuring the deployment of the same technology across two organizations, demonstrates the application of these methods. This case study not only shows the type of insights that might be gained from utilizing these models, but exposes the limitations of each technique and the practicality for use within an enterprise. These limitations emphasize the need for large datasets and extensive system knowledge to perform a thorough analysis of the anticipated resistance.&#13;
&#13;
Ultimately, this research highlights the complex technical, social, and psychological dynamics of resistance and the challenges of capturing these factors within a quantitative model. The proposed methods build upon theoretical models for change resistance and technology adoption 3 to demonstrate the value in leveraging systems thinking and cutting edge technology to generate unique resistance insights.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Generation of Structural-and-Automation Compliant Cost-Effective Product Designs: Application to Large-Scale Sheet Metal Manufacturing</title>
<link href="https://hdl.handle.net/1721.1/165624" rel="alternate"/>
<author>
<name>Salim, Stanley Sebastian</name>
</author>
<id>https://hdl.handle.net/1721.1/165624</id>
<updated>2026-04-22T03:09:13Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Generation of Structural-and-Automation Compliant Cost-Effective Product Designs: Application to Large-Scale Sheet Metal Manufacturing
Salim, Stanley Sebastian
Sheet metal manufacturing holds importance due to its vast applications in construction, automotive, and aerospace. Growth in the sheet metal manufacturing industry has pushed companies to automate manufacturing processes to increase competitiveness by reducing costs while maintaining quality. However, implementation of a new system comes with challenges across an organization, as different teams are subject to biases that result in push-back towards adoption. This thesis focuses on the generation of cost-effective product designs that are compliant with requirements provided by design, structural, and manufacturing teams through the development of a cost model to compare manufacturing value streams and a design generation tool that generates cost-effective designs given structural and automation constraints. The work resulted in cost reductions between 10% to 22%, with improvements in quality and safety metrics, when compared to legacy designs using a manual press brake (MPB). Across the series of designs generated in this work, cost reduction occurs in a distribution of part populations between 41-59% and 77-23% split across the automated panel bender (APB) and automated tube laser (TL) respectively. The implications of these results show that significant cost reductions can be achieved through minimizing material usage, which leads to lower material costs, lower fabrication or labor costs, and unchanged assembly costs.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Biochemical characterization of a family of sigma factor-associated TnpB proteins</title>
<link href="https://hdl.handle.net/1721.1/165623" rel="alternate"/>
<author>
<name>Liu, Catherine C.</name>
</author>
<id>https://hdl.handle.net/1721.1/165623</id>
<updated>2026-04-22T03:03:43Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Biochemical characterization of a family of sigma factor-associated TnpB proteins
Liu, Catherine C.
The TnpB proteins are a widespread family of bacterial and archaeal RNA-guided enzymes thought to be the evolutionary ancestors of Cas12 endonucleases. Previous studies have identified tnpB genes associated with proteins of diverse functions, including bacterial transcriptional regulation [1-3]. In my doctoral thesis work, I characterize the biochemical properties of a family of sigma factor-associated TnpB proteins. I show that various sigma factor-associated tnpB loci encode a non-coding RNA species (ωRNA) downstream of the tnpB stop codon that binds to the purified TnpB protein. When co-expressed with their cognate ωRNAs, the sigma factor-associated TnpB proteins target and bind regions of the E. coli genome corresponding to a 4-8 nucleotide guide sequence found within the ωRNA and an additional 5’ 2-5 nucleotide target-adjacent motif (TAM). In vitro binding assays confirm that TnpB binds its double-stranded DNA target in an ωRNA- and TAM-dependent manner. Focusing on one ortholog with a well-defined TAM, I find that the TnpB protein can be partially retargeted to different regions of the E. coli genome by reprogramming its 8 nucleotide ωRNA guide sequence. I furthermore demonstrate that this TnpB co-immunoprecipitates with its associated sigma factor when both are heterologously expressed in E. coli. Collectively, these data suggest that this family of TnpBs are RNA-guided DNA-targeting proteins that may be functionally involved in transcriptional regulation through their association with bacterial sigma factors.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Verification of the ADDER Fuel Management Code for MITR-II Fuel&#13;
Management Analysis</title>
<link href="https://hdl.handle.net/1721.1/165622" rel="alternate"/>
<author>
<name>Ahuactzin-Garcia, Emilio</name>
</author>
<id>https://hdl.handle.net/1721.1/165622</id>
<updated>2026-04-22T03:07:17Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Verification of the ADDER Fuel Management Code for MITR-II Fuel&#13;
Management Analysis
Ahuactzin-Garcia, Emilio
The Massachusetts Institute of Technology Reactor (MITR-II) is a 6 MWth research reactor with highly enriched uranium fuel. Due to the proliferation concerns of civilian HEU use, the MIT Nuclear Reactor Laboratory is actively participating in the US High Performance Research Reactor (USHPRR) program, which seeks to transition the remaining HEU fueled research reactors to newly developed LEU fuel. As part of the USHPRR program, the Advanced Dimensional Depletion for Engineering of Reactors (ADDER) software is being developed at Argonne National Laboratory for research reactor fuel management, and is being analyzed here as a replacement for the MCODE-FM currently used for MITR-II fuel management. This work performed code-to code comparison of MCODE and ADDER for actually operated core configurations, expanding on previous work done on fresh HEU and LEU core configurations. This study showed satisfactory agreement between MCODE and ADDER results. While the predicted critical bank heights at each time step were subtly different between the codes, the differences are nearly all within the 200 pcm acceptance band set in the criticality search algorithms, and are less than the differences between modeled and actual bank heights, so are acceptable. All runs showed an end of cycle U-235 mass discrepancy between MCODE and ADDER less than 0.5 g per element, and no other isotope had a discrepancy greater than 3% per element. Neutron flux and fission density had similarly minor differences. This overall close agreement indicates that for actual fuel management tasks, ADDER is a suitable replacement for MCODE.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>System's approach evaluation for decision-making in a lubricant additives package blending plant</title>
<link href="https://hdl.handle.net/1721.1/165621" rel="alternate"/>
<author>
<name>Pommier, Stephanie</name>
</author>
<id>https://hdl.handle.net/1721.1/165621</id>
<updated>2026-04-22T03:07:51Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">System's approach evaluation for decision-making in a lubricant additives package blending plant
Pommier, Stephanie
This thesis applies a systems thinking approach to evaluate decision-making in a lubricant additives package blending plant facing increasing product complexity and demand. The blending unit operates in a high-mix, multi-product environment, with partial automation and strong reliance on human expertise. Nowadays, capacity is more constrained by loading activities than mixing, but future growth and complexity may shift bottlenecks. Current scheduling practices, based on empirical “equivalent quantity” metrics, inadequately capture true capacity constraints or the impact of complexity, particularly when the in-line mixing facility becomes the critical path.&#13;
The study combines literature review, on-site observation, data analysis, and system architecture modeling—using Object Process Methodology (OPM) and Design Structure Matrices (DSM)—to represent product families, process interdependencies, and stakeholder needs. Operational data are analyzed to compare actual facility utilization with theoretical conservative critical path metrics, revealing difficulty in adequately capturing data. The actual calculation, Equivalent Quantity, and the new proposed one, Theoretical Critical Path, are proposed to be utilized as complementary metrics to improve scheduling validation and bottleneck identification.&#13;
Simulation models and metrics are developed to evaluate feasibility, anticipate facility saturation, and assess the impact of introducing new packages. These models consider package composition, number of process steps, facility type, and priority rules. &#13;
The research concludes that integrating system-level representations with improved metrics and simulation can enhance daily scheduling robustness, support long-term investment planning, and maintain operational resilience. Recommendations include refining data capture, adopting dual-metric scheduling, keeping humans for complex decision-making in this moving and uncertain environment, and applying simulation for scenario testing to prepare the blending unit for future demand and complexity.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shared Autonomous Micro-Mobility: Evaluating Fleet Performance, Operational Strategies, and Sustainability</title>
<link href="https://hdl.handle.net/1721.1/165620" rel="alternate"/>
<author>
<name>Coretti Sánchez, Naroa</name>
</author>
<id>https://hdl.handle.net/1721.1/165620</id>
<updated>2026-04-22T03:05:29Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Shared Autonomous Micro-Mobility: Evaluating Fleet Performance, Operational Strategies, and Sustainability
Coretti Sánchez, Naroa
Autonomous vehicles (AVs) have long been anticipated to revolutionize transportation, offering promises of effortless, safe, and congestion-free travel. Yet, concerns remain that AVs may exacerbate the car-dependency that has dominated the transportation landscape for over six decades. In contrast, sustainability-driven concepts—such as walkable cities and the "15-minute city"—are gaining momentum, advocating for urban spaces designed around pedestrians, public transport, and micro-mobility modes like bicycles and e-scooters. This thesis investigates how shared autonomous micro-mobility (SAmM) systems—lightweight, shared autonomous vehicles—can reconcile the tension between AV innovation and the push for human-centric urban mobility.&#13;
&#13;
While much of the research on AVs has focused on cars and taxis, this thesis turns its attention to micro-mobility systems such as bicycles and scooters. It explores whether the efficiencies attributed to shared autonomous vehicles can also enhance the performance of shared micro-mobility systems. Early prototypes of SAmM vehicles, such as autonomous bicycles and tricycles, have mostly addressed technical challenges at the individual vehicle level. However, broader fleet-level impacts and operational strategies remained understudied.&#13;
&#13;
To address this gap, this thesis presents a number of studies that are structured as follows. First, it introduces an agent-based model to evaluate the fleet-level performance of SAmM with a case study focused on autonomous bicycles. Second, it investigates operational strategies, such as decentralized fleet management and multi-functional services that cater to both passengers and delivery needs. Lastly, the thesis presents a life-cycle environmental impact analysis and examines the potential mode shifts associated with these new vehicles, offering insights into their sustainability and broader societal impacts.&#13;
&#13;
By examining the fleet performance and sustainability of SAmM, this research contributes to the emerging field of lightweight autonomous vehicles and provides early-stage guidelines for their development and deployment. While the long-term impacts of these mobility modes remain uncertain, shaping their design from the outset is essential to prevent the unintended consequences that have accompanied previous waves of transportation innovation, such as the rise of car dependency or the initial deployments of shared micro-mobility systems. Ultimately, this thesis offers a vision for how autonomous mobility can evolve to support, rather than disrupt, the goals of walkable, human-centric urban spaces and environmentally sustainable transportation.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Performing Performance Spaces: Expressing Context in Live Music</title>
<link href="https://hdl.handle.net/1721.1/165619" rel="alternate"/>
<author>
<name>Schon, Ana</name>
</author>
<id>https://hdl.handle.net/1721.1/165619</id>
<updated>2026-04-22T03:08:44Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Performing Performance Spaces: Expressing Context in Live Music
Schon, Ana
From basements and living rooms, to bars and clubs, to stadiums and arenas, the spaces that become venues for music performances bring with them unique features that can present sound reinforcement challenges. This is especially the case with smaller, lower-budget community-run or pop-up performance spaces, which may display more non-ideal characteristics like a higher electrical noise floor or unique acoustics. Qualities like these, coupled with the people occupying the space, distinguish one performance context from another—to a band on a long tour or to an audience member attending many shows in the same city.&#13;
&#13;
This thesis is structured around a series of live concerts using a digital audio processing system that captures, exaggerates, and reproduces unique acoustic qualities of the spaces where the concerts are taking place. This allows performers to exaggerate these qualities expressively by modulating their prominence with a MIDI controller.&#13;
&#13;
The concerts feature performances by the author as well as local Boston-area musicians. They aim to encourage their participants, both musicians and audiences, to share a musical experience that fosters awareness of context, the here and now, and shows the significance (in music and beyond) of the places we occupy and the people we share them with.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Planetary Traction Drive for Submarine Application withTapered Rollers</title>
<link href="https://hdl.handle.net/1721.1/165618" rel="alternate"/>
<author>
<name>Murphy, Trevor</name>
</author>
<id>https://hdl.handle.net/1721.1/165618</id>
<updated>2026-04-22T03:05:41Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Planetary Traction Drive for Submarine Application withTapered Rollers
Murphy, Trevor
Fundamental contributions of this research include: &#13;
• Demonstrate scaling potential of traction drives for larger power scales (on the order of 80MW) &#13;
• Creation, modeling, and testing verification of a tapered traction drive that uses axial thrust to provide operational preload to maximize fatigue lifetime with variable preloading &#13;
• Demonstrate water’s feasibility as a traction fluid Within demonstrating scaling potential, the stresses generated in a traction roller are modeled and applied to a case study of the Emma Maersk suggesting that a 3.5m hub inner diameter with a transmission ratio of 3 is within infinite lifetime operation of a highstrength bearing steel traction drive at 81MW and 100rpm output power and rotation speed respectively. Variable preloading can be produced from the thrust force of a propeller pushing into tapered roller planetary transmission and provide enough preload to sustain its entire operational range if a non-dimensional slope parameter is less than [formula]. Here θ is the taper angle of the sun roller, µ is the coefficient of traction between rolling surfaces, rₛ is the sun roller radius, ϕ is the transmission ratio of the drive, k_q is the torque coefficient of the propeller, kₜ is the thrust coefficient of the propeller, and D is the diameter of the propeller. If instead the slope parameter is greater than one, extra initial axial preload is needed for the propeller’s thrust to sustain its operation and can be calculated with [formula]. Water has the potential to be comparable to, and even surpass, existing traction fluids in traction performance because it can transform into Ice VI under pressures in the elastohydrodynamic layer leading to a potential 0.24 effective coefficient of traction between rolling surfaces compared to a maximum of 0.13 for traction oils. To confirm the theory, more testing is needed to measure actual rheological properties. A dynamic rheometer test would require sufficient surface speeds to entrain water into a traction drive’s contact zones against the large pressure gradient. An example system with a rotation element of 5in radius and a rotation speed of 2000rpm is theorized to work. For water to be effectively used in a traction drive system, faster roller surface speeds, larger system sizes, better surface roughness specifications, or some combination of these would be necessary.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Leaving the Legacy: Architecting Technical Centers in Energy Enterprises</title>
<link href="https://hdl.handle.net/1721.1/165617" rel="alternate"/>
<author>
<name>Rucks, Alexa Beverly Metz</name>
</author>
<id>https://hdl.handle.net/1721.1/165617</id>
<updated>2026-04-22T03:07:20Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Leaving the Legacy: Architecting Technical Centers in Energy Enterprises
Rucks, Alexa Beverly Metz
As major oil and gas companies compete in a landscape of evolving regulations, growing demand for diverse energy sources, and rapid digitalization, they face increasing complexity in adapting to the changing world. While historically, the technical centers embedded within these enterprises have driven technological advancement, the traditional way of working may not be delivering the required value to the broader enterprise. This thesis examines enterprise architecture transformation for a technical center in the oil and gas sector, emphasizing the need for greater agility, resilience, and innovation in the face of intensifying regulatory, technological, and market pressures. In response to complex challenges such as decarbonization mandates, digitalization, and evolving stakeholder demands, the research explores how technical centers, as key hubs of expertise and innovation, can be strategically positioned to support effective organizational change. A qualitative, design-oriented methodology is employed, integrating literature review, stakeholder analysis, and application of the ARIES framework to a technical center. The study maps internal and external enterprise landscapes, assesses current architectural practices using structured models, and develops future-oriented concepts evaluated against criteria aligned with sector-specific transformation needs. Findings reveal the limitations of conventional enterprise architecture in addressing dynamic industry conditions and illustrate how a holistic, stakeholder-centered approach can improve alignment, innovation capacity, and operational effectiveness. The thesis concludes with future areas of research and exploration.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A New Lens on Life: Cross-Contextual Sensing Technologies from Human Insights to Wildlife Conservation</title>
<link href="https://hdl.handle.net/1721.1/165616" rel="alternate"/>
<author>
<name>Chwalek, Patrick C.</name>
</author>
<id>https://hdl.handle.net/1721.1/165616</id>
<updated>2026-04-22T03:03:05Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A New Lens on Life: Cross-Contextual Sensing Technologies from Human Insights to Wildlife Conservation
Chwalek, Patrick C.
The growing complexity of human-centric and ecological systems demands new sensing technologies capable of capturing holistic, contextual insights in real-world environments. However, a critical gap exists in the availability of integrated, intelligent platforms that can be adapted across these diverse domains. This dissertation addresses this challenge by designing, engineering, and validating a series of novel, multi-modal sensing platforms to provide a new and more insightful lens on a broad range of life.&#13;
&#13;
The research spans two primary contexts. First, to explore the nuances of human well-being, the AirSpecs smart-eyeglass platform was developed and deployed. This system holistically measures an individual's proximate environment and physiological parameters, and was validated in a multi-site international study to investigate the dynamics of human comfort "in-the-wild". Second, to advance ecological monitoring, a progression of acoustic platforms was engineered. The SoundSHROOM system was created as a robust, multi-channel recorder for harsh environments and successfully deployed in the Arctic. Building on this, the BuzzCam system was developed for targeted pollinator monitoring, culminating in an end-to-end pipeline for on-device AI classification of endangered and invasive bee species in Patagonia. Finally, the CollarID platform was engineered and characterized as a versatile, low-power, multi-modal animal-borne sensor for wildlife tracking, integrating inertial, bioacoustic, and comprehensive environmental sensing to move beyond the limitations of location-only devices.&#13;
&#13;
Key contributions of this work include the validated hardware platforms themselves; several unique, publicly available datasets from urban, Arctic, and Patagonian deployments; and a demonstrated methodology for implementing on-device AI to address the data-to-insight bottleneck in ecological monitoring. Collectively, this research provides the scientific community with a new suite of powerful research tools and demonstrates a cross-contextual design philosophy, leveraging engineering principles across disparate fields to enable a deeper understanding of organisms and their complex interactions with their environments.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A System Approach To Architecting Multi-Agent Systems In Enterprises</title>
<link href="https://hdl.handle.net/1721.1/165615" rel="alternate"/>
<author>
<name>Ruscalleda-Escobar, Gabriel</name>
</author>
<id>https://hdl.handle.net/1721.1/165615</id>
<updated>2026-04-22T03:06:55Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A System Approach To Architecting Multi-Agent Systems In Enterprises
Ruscalleda-Escobar, Gabriel
This thesis develops a systematic framework for the architecture, evaluation, and phased deployment of AI-powered multi-agent systems in enterprise environments. Beginning with a comprehensive review of agent capabilities, architectural patterns, coordination protocols, and governance models, the study identifies critical design criteria guiding effective MAS integration. Employing a structured systems engineering approach, combining architectural decision analysis, multi-attribute utility modeling, and Monte Carlo-based tradespace exploration, the research quantifies cost-performance trade-offs and evaluates MAS concepts against prioritized enterprise metrics. Prototype implementations targeting real-world workflow challenges validate key architectural choices and inform a detailed strategic and technical roadmap for MAS integration, grounded in an AI System Readiness Level framework. This thesis concludes with actionable recommendations and future research directions to accelerate the adoption and maturity of MAS in organizational practice.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design and Applications of Piezoelectric Yarns with Olefin&#13;
Block Copolymer (OBC) Elastomeric Cores</title>
<link href="https://hdl.handle.net/1721.1/165614" rel="alternate"/>
<author>
<name>Villarreal Beltran, Sahara C.</name>
</author>
<id>https://hdl.handle.net/1721.1/165614</id>
<updated>2026-04-22T03:10:54Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Design and Applications of Piezoelectric Yarns with Olefin&#13;
Block Copolymer (OBC) Elastomeric Cores
Villarreal Beltran, Sahara C.
This thesis explores the development of a helical auxetic yarn composed of two fibers: (1) a piezoelectric fiber with energy-harvesting abilities and (2) an olefin block copolymer core (OBC) yarn with an optimal combination of strength and elasticity. This yarn would be incorporated into a larger fabric or garment that would eventually take advantage of the mechanical forces exerted by the human body to harvest energy through the piezoelectric effect passively. For this to occur, several factors must be considered. The auxetic nature of the yarn is hypothesized to amplify the mechanical deformation of the piezoelectric fiber, thereby enhancing the overall electric output of the fabric; however, the efficiency and reporting of piezoelectric fiber performance remains unstandardized. A tabulated literature review will show commonalities and trends in presently developed piezoelectric fibers. Additionally, any fabric intended for human wear must be able to withstand the forces exerted by the human body. OBC, with its unique microstructure, may have the correct balance of elasticity and strength required for this task. One option to modify, and hopefully improve, the mechanical properties of OBC is through the use of ionizing particle radiation to cross-link the polymer chains. Considerations for how to mount OBC fibers for irradiation are also included in this thesis, along with an analysis of OBC’s existing mechanical properties.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Democratizing Smart Manufacturing: A Comprehensive Framework for FrED’s Production and Educational Enhancement</title>
<link href="https://hdl.handle.net/1721.1/165613" rel="alternate"/>
<author>
<name>Yu, Yiming</name>
</author>
<id>https://hdl.handle.net/1721.1/165613</id>
<updated>2026-04-22T03:10:05Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Democratizing Smart Manufacturing: A Comprehensive Framework for FrED’s Production and Educational Enhancement
Yu, Yiming
The Fiber Extrusion Device (FrED) serves as an accessible desktop tool designed to emulate the industrial fiber drawing process, providing engineering students with hands-on experience in critical areas such as data acquisition, control systems, computer vision, data analytics, and smart manufacturing. Its primary objective is to deliver a practical laboratory experience within remote learning environments. Building upon previous iterations, the 2025 FrED team focused on refining the device’s design, scaling up manufacturing, optimizing assembly lines, managing inventory with Tulip, and developing comprehensive educational content. This thesis specifically details the author’s contributions to the implementation of Design for Manufacturability (DFM) and Design for Assembly (DFA) principles, significantly improving product quality and stability. Key contributions also include substantial upgrades to the image processing and Graphical User Interfaces (GUIs), alongside the development of Manufacturing Standard Operating Procedures (MSOPs) for 3D printable components. Through these efforts, the team successfully scaled production to 30 units, optimized inventory management systems using Tulip, and created valuable educational materials. While significant progress was made, certain challenges remain that impact FrED’s potential as a consumer product. These include inconsistencies in diameter readings from the USB camera, complexities associated with the hot glue preform’s physics, and suboptimal motor speed assumptions identified during closed-loop testing, where a necessary reduction in spool speed to increase diameter interfered with subsequent camera readings. Despite these hurdles, pilot production runs, user testing, and the ongoing development of educational content have yielded promising results, affirming FrED’s potential as a valuable educational tool.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Systems Approach to Redesigning Human-AI Interactions in Gaslift Operations for Upstream Oil and Gas</title>
<link href="https://hdl.handle.net/1721.1/165612" rel="alternate"/>
<author>
<name>Momoh, Victor I.</name>
</author>
<id>https://hdl.handle.net/1721.1/165612</id>
<updated>2026-04-22T03:09:51Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A Systems Approach to Redesigning Human-AI Interactions in Gaslift Operations for Upstream Oil and Gas
Momoh, Victor I.
Artificial intelligence tools are increasingly used to support engineering decisions, yet their value depends on whether humans trust and act on their recommendations. This thesis investigates how LLM response style and user expertise influence trust in a technical context. Gas‑lift troubleshooting was used as a domain case. One hundred thirty‑one participants across five expertise levels were randomly assigned to evaluate a diagnostic scenario answered by one of four curated LLM personas that varied in tone, confidence, and accuracy. After each of five steps, participants rated trust and explained their rationale. We analyzed trust ratings using one‑ and two‑way ANOVA with post‑hoc tests and complemented the analysis with text mining and exploratory factor analysis of perceived trust drivers. Trust varied by LLM persona and by participant expertise, with no evidence of interaction effects. Beyond accuracy, three attributes consistently associated with higher trust were clarity, source citation, and presentation of a confidence score. Text analysis showed that experts emphasized technical validity, while less‑experienced users prioritized clarity and information sufficiency. Based on these results, the thesis proposes a conceptual redesign for human-AI interaction that adapts explanations to expertise, discloses confidence, and links recommendations to supporting sources. The framework provides measures of operational effectiveness to evaluate adoption and impact in production settings. Findings suggest that tailoring communication rather than using a one‑size‑fits‑all style can improve trust and decision quality in gas‑lift operations and similar engineering workflows.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Impact of Artificial Intelligence in Cross-Cultural Knowledge Management for Multinational Enterprises</title>
<link href="https://hdl.handle.net/1721.1/165611" rel="alternate"/>
<author>
<name>Del Mundo, Mel-jie Brent</name>
</author>
<id>https://hdl.handle.net/1721.1/165611</id>
<updated>2026-04-22T03:07:38Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Impact of Artificial Intelligence in Cross-Cultural Knowledge Management for Multinational Enterprises
Del Mundo, Mel-jie Brent
Multinational enterprises (MNEs) are faced more frequently with challenges in managing knowledge across diverse cultural environments, particularly when dealing with tacit knowledge transfer. Tacit knowledge, inherently rooted in personal experiences and social interactions, is significantly challenged from cultural differences, including relational, cognitive, and structural dimensions. Although well known models of Knowledge Management (KM), like Nonaka's SECI model, provide structured knowledge conversion and sharing approaches, they do not inherently address these cross-cultural complexities. As Artificial Intelligence (AI) rapidly evolves, it offers significant potential to bridge these cultural gaps, facilitating more effective and timely tacit knowledge sharing. Thus, this exploratory research addresses the intersection of AI and cross-cultural tacit knowledge sharing within MNEs.&#13;
&#13;
To systematically examine this intersection, a conceptual research model was developed based on a comprehensive review of existing literature on KM, cross-cultural social capital theory (relational, cognitive, and structural), and AI capabilities. The model positions AI tools as key facilitators, bridging specific cultural barriers. Relational dimension addresses interpersonal trust and group dynamics, cognitive dimension emphasizes common understanding and communication clarity, and structural dimension pertains to organizational hierarchies and communication channels. Additionally, AI understanding and trust were hypothesized as critical moderators, affecting user engagement and reliance on AI systems.&#13;
&#13;
This research employed a mixed-method approach centered on structural equation modeling (SEM) to validate the proposed conceptual model. Data were collected from 217 respondents across various industries and organizational departments, emphasizing individuals with recent cross-cultural collaboration and AI tool experience. The analysis proceeded through Exploratory Factor Analysis (EFA), Confirmatory Factor Analysis (CFA), and finally Structural Equation Modeling (SEM), including Common Method Bias (CMB) assessments for transparency and validity.&#13;
&#13;
Results from SEM showed interesting findings. While specific direct paths, such as AI tools' immediate impact on effective tacit knowledge sharing, were not statistically significant, indirect effects were notably evident. Particularly, AI understanding significantly enhanced AI trust, subsequently facilitating AI tools' perceived effectiveness. Moreover, majority of the respondents consistently acknowledged the value of AI in bridging cultural barriers across relational, cognitive, and structural dimensions. Nevertheless, considerable number of respondents expressed uncertainty regarding the precise capabilities of AI, suggesting a threshold of trust and understanding yet to be fully surpassed for substantial impacts to be consistently observable.&#13;
&#13;
In summary, the thesis demonstrates that AI holds promise in addressing cultural barriers in tacit knowledge sharing within MNEs. However, the effectiveness strongly hinges on the users' understanding and trust in AI. These findings provide valuable insights for organizations intending to leverage AI strategically in multicultural contexts. Future research directions include more profound exploration of AI's subtle indirect impacts and longitudinal assessments of trust-building interventions.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Systems Engineering for Biopharmaceutical Manufacturing Processes with Phase Transitions</title>
<link href="https://hdl.handle.net/1721.1/165610" rel="alternate"/>
<author>
<name>Srisuma, Prakitr</name>
</author>
<id>https://hdl.handle.net/1721.1/165610</id>
<updated>2026-04-22T03:03:25Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Systems Engineering for Biopharmaceutical Manufacturing Processes with Phase Transitions
Srisuma, Prakitr
The biopharmaceutical industry has been growing significantly over the past few years. Various biotherapeutics have been developed and played a crucial role in advancing global health, e.g., monoclonal antibodies, cell and gene therapy, and messenger ribonucleic acid (mRNA) vaccines. Nevertheless, the current biopharmaceutical manufacturing is facing several challenges associated with production scalability, operational flexibility, and quality control. For example, many biopharmaceutical  processes are still operated in batch mode, while continuous manufacturing has already been adopted in other major industrial sectors. As such, significant efforts have been recently dedicated to the development and integration of advanced manufacturing technology for biopharmaceutical processes. &#13;
&#13;
This thesis presents an array of novel computational tools and methods across process systems engineering (PSE) domains developed for biopharmaceutical manufacturing. Several PSE applications are discussed and demonstrated, including process modeling, monitoring and state estimation, model-based control and optimization, and uncertainty quantification. Two important biopharmaceutical processes that involve phase transitions are studied, namely (1) lyophilization and (2) cell thawing, serving as the two main parts of this thesis.   &#13;
&#13;
&#13;
The first part of this thesis centers on lyophilization. Lyophilization (also known as freeze drying) is a low-temperature, low-pressure dehydration process used for improving the stability of various biotherapeutics, including its recent application to mRNA vaccines. In this thesis, we first present a set of mechanistic models for various lyophilization designs, including conventional/batch lyophilization, microwave lyophilization, hybrid lyophilization, and the state-of-the-art lyophilization technology, namely continuous lyophilization of suspended vial. The validated models can accurately predict the evolution of the critical process parameters for the entire lyophilization cycle, including the product temperature, ice/water fraction, sublimation front position, and concentration of bound water (residual moisture). Second, we showcase a state observer that estimates the concentration of bound water by using temperature measurement as an input. This state observer allows for real-time tracking of the residual moisture, which is typically present in trace amounts and difficult to measure online. Third, we describe a highly efficient framework for incorporating the probabilistic uncertainty into our model via polynomial chaos theory (PCT). Our PCT-based lyophilization model is demonstrated for fast uncertainty quantification and stochastic control. Finally, we propose a new, efficient way of solving optimal control problems via reformulation and simulation of a hybrid discrete/continuous system of mixed-index differential-algebraic equations. The proposed algorithm is several orders of magnitude faster than the traditional optimization-based approaches while maintaining similar/better accuracy. The algorithm is also demonstrated for finding the optimal control policies for lyophilization under different conditions.&#13;
&#13;
The second part of this thesis focuses on cell thawing. Cell thawing a critical step in cell therapy before cells are introduced to the patients. Traditionally, the thawing process requires human intervention to ensure proper progression and completion before the cells can be administered to the patients. In this thesis, we build a thermal imaging-based system that facilitates the monitoring, control, and automation of cell thawing. First, a mechanistic model is proposed to guide the design of cell thawing systems. Then, a thermal imaging-based state observer is developed for real-time process monitoring, which keeps track of the phase transition (melting/thawing) and accurately identifies the endpoint of the process. Lastly, we present a novel optimal control architecture for accelerating the process and controlling the final product quality corresponding to the thawing protocols.&#13;
&#13;
Finally, with all the tools and methods established, we discuss the development of a digital twin for biopharmaceutical manufacturing. The digital twin receives and processes data from its physical counterpart, performs several complex computations in real time, and provides instructions/feedback to the physical system, serving as a virtual representation of the physical system of the manufacturing system. Ultimately, this thesis provides a complete PSE framework and case studies for advanced biopharmaceutical manufacturing that involves phase transitions.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Self-Driving Autonomous Robotic Laboratory for High-Throughput Semiconductor Materials Discovery</title>
<link href="https://hdl.handle.net/1721.1/165609" rel="alternate"/>
<author>
<name>Siemenn, Alexander E.</name>
</author>
<id>https://hdl.handle.net/1721.1/165609</id>
<updated>2026-04-22T03:05:38Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A Self-Driving Autonomous Robotic Laboratory for High-Throughput Semiconductor Materials Discovery
Siemenn, Alexander E.
Discovering new high-performance and functional materials is critical for the advancement of sustainable technologies. This thesis presents the design of a fully autonomous and self-driving laboratory for the discovery of optimized semiconductor materials used in solar photovoltaic applications. By leveraging sample miniaturization, parallelization, and machine learning-controlled robotics, the developed self-driving laboratory achieves a throughput of over 1,000 unique material compositions created, measured, and optimized per day.&#13;
&#13;
The challenge of discovering a new optimal material comes down to the number of potential candidates within a search space. Perovskites — a class of semiconductors commonly studied for their properties as solar cells — have millions of possible compositional candidates within only an eight-dimensional search due to their widely interchangeable chemical formula. However, only a small fraction of these candidates have promise as high-performance semiconductors. While computational and predictive approaches provide a means to quickly reduce this search space, these methods alone often fail to accurately generalize to such vast and complex spaces due to few quality training datasets existing. Conversely, experimental approaches have high single-candidate accuracy but suffer from low throughputs. The presented self-driving laboratory fuses both computational and experimental approaches to rapidly down-select candidates with improved accuracy by iteratively generating its own experimental training dataset.&#13;
&#13;
The developed self-driving laboratory is divided into four chapters: (1) synthesis, (2) characterization, (3) optimization, and (4) discovery. Each subsystem outlined in these chapters is engineered for speed and repeatability to maximize the cycles of learning when searching through vast and high-dimensional search spaces:&#13;
&#13;
(1) Synthesis: A high-throughput synthesis tool is developed to automate the printing and crystallization of semiconductors by combining up to ten unique precursor formulations into target compositions, requested by a machine learning algorithm. &#13;
&#13;
(2) Characterization: Two characterization systems are developed: one that rapidly parallelizes measurement of optical band gap properties using computer vision, and another that autonomously measures photoconductance electrical properties through contact-based measurement, controlled by neural network predictions. &#13;
&#13;
(3) Optimization: A machine learning algorithm employing bounded search techniques is developed to guide the discovery of exceptional material compositions from high-dimensional and non-convex search spaces using the characterization results to suggest new optimal target compositions for synthesis in each subsequent iteration. &#13;
&#13;
(4) Discovery: Lastly, control and multithreading communication protocols are developed to integrate all subsystems together with the goal of autonomously discovering optimal materials from a search space. Autonomous operation is achieved by coupling the subsystems with robotic arms and automated sample transporters, culminating in a fully self-driving laboratory, entitled DiSCO ([Di]scovery, [S]ynthesis, [C]haracterization, and [O]ptimization).&#13;
&#13;
DiSCO creates, measures, and decides which new materials to make with full autonomy. A 24-hour optimization campaign is run to demonstrate the autonomy and performance of DiSCO with the objective of finding semiconductor compositions that have optimal optoelectronic properties for use as perovskite solar cells. The convergence to the optimization target as well as the number of candidate compositions synthesized from the search space are compared against experimentally derived results from literature.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Designing the CthulhuCosmos: Toward a Speculative Cosmo-politics of Indigenous Epistemology in Space</title>
<link href="https://hdl.handle.net/1721.1/165608" rel="alternate"/>
<author>
<name>Muniyappa, Prathima</name>
</author>
<id>https://hdl.handle.net/1721.1/165608</id>
<updated>2026-04-22T03:04:30Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Designing the CthulhuCosmos: Toward a Speculative Cosmo-politics of Indigenous Epistemology in Space
Muniyappa, Prathima
For millennia, civilisations scattered across the earth have craned their necks up towards the cosmos to seed their origin mythologies into the blanket expanse of deep space. However the imbrication of imperial conquest, colonial expansion, and militarized competition  transformed humanity’s seedbed of cosmology into a project of material incursion, casting outer space as a frontier primed for possession, surveillance, and extraction. The history of astronomy is a history of receding horizons, but the horizon is no monolithic constant. It remains a jagged line as it wrestles with issues of democratisation of space exploration and access. For some countries and corporations the apparent ‘frontier’ of space is a territory familiar with significant resources and infrastructure to have become veteran voyagers; others take nascent steps, developing strategies to strengthen their space programs; and yet others remain feet planted firmly, gazing at the horizon that never moved, exploring the deep expanse of the cosmos through myth, language, ritual and dreamscape. &#13;
&#13;
Indigenous people across the globe have remained explorers of this enigma through rich cultural cosmologies evolved over millennia of observation. Their knowledge represents diverse epistemologies that offer insight into radically different relationships that humans have evolved about space and its exploration, and is a fount of intangible heritage that rarely makes an appearance in the mainstream discourses. As humans become prominent actors in extraterrestrial realms, it stirs in its wake complex questions of identity politics. Whose identity becomes a blueprint for ‘humanity’? What cultures are represented and how? What cultures and narratives are silenced by deliberate obscuration or worse by ignorance and apathy? These questions emerge as a dialectic to the monolithic identities and monocultures of mind that underpin mainstream space discourse. Nested within storied cultural heritages are alternative cosmologies, attuned to other dimensions and extended voyages that offer the possibility of thickening the discourse towards a more inclusive mythology for future space exploration. For speculative design to become truly liberatory, it must create space for those rendered inarticulate by the architectures of structural design. This requires a reconfiguration of the very grammar of futurity, an effort to recruit voices we have not trained ourselves to hear. What forms of consultation and authorship emerge when the techno-poetics of the disenfranchised are taken seriously? What does epistemic hospitality look like when mediated through art and design? These questions shape the methodological horizon of this dissertation: Can voices from the margins thicken the discourse on space exploration? Can the subaltern speculate? And if so, what futures become possible when they do?&#13;
&#13;
The argument then is to transition from a colonial aerospace to a decolonial cosmos. This dissertation proposes the CthulhuCosmos as a site of possibility, a speculative cosmopolitics inspired by Donna Haraway’s Chthulucene, calling for tentacular forms of kinship that thread together the terrestrial and the extraterrestrial. Drawing from field-based engagements with the Likan Antai of the Atacama Desert, the Changpa of Ladakh, the Khasi of Meghalaya, the Maasai of Kenya, and other communities and sites in Central Asia, the dissertation extends epistemic hospitality to these cosmological traditions to enter into dialogue with modern techno-imaginaries in the realm of space exploration. Much has been written on dualisms in science subject/object, culture/nature but less attention has been paid to the void that undergirds these dialectics, and the mythologies of purity that enforce their boundaries.&#13;
&#13;
Rather than seeking synthesis or translation, this dissertation positions these cosmologies in deliberate adjacency, provoking the emergence of ontological multiplicity without collapsing difference into a universal frame. To navigate these entangled terrains, it proposes threshold craft as a methodological framework: a practice of designing and mediating epistemic encounters at the interstices of science, cosmology, and speculative design. Threshold craft emerges as a form of cosmopolitical calibration attuned to asymmetry, opacity, and plural rationalities through which the CthulhuCosmos can be articulated as a scaffold for relational intelligibility between divergent ways of knowing. The dissertation offers a speculative infrastructure for navigating the architectures of space exploration and other emergent technoscientific domains wherever futures are being imagined and ethics remain unsettled. As a methodological framework, it enables the design of epistemic encounters grounded in ethical entanglement and relational responsibility, allowing divergent cosmologies to co‑inhabit speculative terrains without erasure or collapse.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Scaling AI Across Retail: Leveraging NLP and Computer Vision to Enhance Customer Experience and Reduce Returns</title>
<link href="https://hdl.handle.net/1721.1/165607" rel="alternate"/>
<author>
<name>Pederson, Lisa</name>
</author>
<id>https://hdl.handle.net/1721.1/165607</id>
<updated>2026-04-22T03:07:56Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Scaling AI Across Retail: Leveraging NLP and Computer Vision to Enhance Customer Experience and Reduce Returns
Pederson, Lisa
Product returns in fashion e-commerce are a persistent and costly challenge, often signaling deeper misalignments in customer expectations, product representation, and operational processes. This thesis explores how Artificial Intelligence (AI), specifically Natural Language Processing (NLP) and Computer Vision (CV), can be applied to reduce returns and improve the customer experience across digital retail channels. Through a systems-based approach, the thesis evaluates technical applications for NLP and CV, and provides strategic frameworks for deploying AI in real-world contexts. Using fashion e-commerce as a representative use case, the research analyzes applications such as virtual try-on, size and fit prediction, visual search, defect detection, and customer sentiment analysis. The thesis introduces a strategic AI adoption roadmap tailored to omnichannel fashion retailers, incorporating AI maturity assessments, change management frameworks, and KPIs to guide successful implementation. These approaches can support retailers to assess readiness, prioritize use cases, and scale responsibly. The thesis integrates qualitative insights and quantitative modeling to estimate the range in potential financial impact, highlighting that AI-enabled interventions can both reduce costs and increase sales from brand loyalty. The findings offer a practical framework for fashion retailers seeking to embed AI into customer-facing systems and decision-making processes for an enterprise-wide AI transformation.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Desalinating Produced Water: A Framework for Brine Concentration and Valorization in the Permian Basin</title>
<link href="https://hdl.handle.net/1721.1/165606" rel="alternate"/>
<author>
<name>Dagnaw, Dawit Y.</name>
</author>
<id>https://hdl.handle.net/1721.1/165606</id>
<updated>2026-04-22T03:09:58Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Desalinating Produced Water: A Framework for Brine Concentration and Valorization in the Permian Basin
Dagnaw, Dawit Y.
Oilfield produced water (PW) in the Permian Basin is projected to exceed 25 million barrels a day by 2030, continuing to pose challenges straining saltwater-disposal (SWD) wells and raising induced seismicity concerns that can constrain production. While recycling it to fracture new wells is progressing well (20% estimated), the vast volume is disposed of via SWD wells. The pore pressure build-up is increasing the risks of induced seismicity (mostly deep disposal) and potential communication to other wells. Simultaneously, West Texas and southeast New Mexico experience chronic drought and water scarcity, creating demand for alternative water sources such as treated produced water. This thesis develops a comprehensive framework grounded in non-ideal thermodynamic modeling, pilot performance data, and navigating evolving regulatory policy for desalinating produced water for beneficial reuse. Produced water volumes and chemistry are characterized, noting extreme salinities (often 100,00 – 200,000 mg/L TDS) and emphasizing the need for robust pre-treatment to remove organic compounds, contaminants, solids, and scale-forming ions. The thesis further evaluates desalination technologies, from advanced membrane processes (e.g., osmotically assisted and low-salt-rejection reverse osmosis) to thermal methods (mechanical vapor compression and humidification-dehumidification), in the context of the Permian Basin’s abundant water, heat, and natural gas resources. Case studies and pilot projects in the Basin demonstrate the viability of achieving high-quality treated water while reducing volume requiring disposal. An integrated framework is proposed for selecting treatment trains and desalination technologies and planning for concentrate management. While disposal by injection is currently cheaper, the strategic use of waste heat, technological innovations, and valorization can shrink the cost gap. Lastly, this thesis explores areas for improvement and recommends future research to further transform a waste challenge into a new water supply and alleviate disposal impacts.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Deep Learning Framework for Solving Geoacoustic Inversion Problems using Normal Mode Theory</title>
<link href="https://hdl.handle.net/1721.1/165605" rel="alternate"/>
<author>
<name>Vardi, Ariel</name>
</author>
<id>https://hdl.handle.net/1721.1/165605</id>
<updated>2026-04-22T03:04:33Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Deep Learning Framework for Solving Geoacoustic Inversion Problems using Normal Mode Theory
Vardi, Ariel
Geoacoustic inversion, the process of estimating seafloor properties from acoustic measurements, is crucial for applications ranging from sonar performance prediction to environmental monitoring. However, traditional inversion methods are often computationally intensive, limiting real-time analysis and large-scale spatial characterization. This thesis presents a deep learning framework to overcome these limitations in shallow-water environments. The core approach involves training one-dimensional convolutional neural networks (1D-CNN) on large synthetic datasets generated using the KRAKEN normal mode acoustic propagation model. By learning the complex mapping from the time series of acoustic pressure to environmental parameters, these networks enable near-instantaneous geoacoustic inversion. Three main contributions are presented. First, a fully automated end-to-end system is developed for use with a single hydrophone. This system detects impulsive acoustic events, locates the source, and inverts key geoacoustic parameters, including sediment sound speed, density, and layer thickness. Validation using data from the 2022 Seabed Characterization Experiment (SBCEX) in the New England Mud Patch shows results comparable to traditional methods but achieved in milliseconds. Second, the methodology is extended to use data from distributed hydrophone arrays to estimate the spatial variability of seabed properties. By combining hundreds of individual track inversions, detailed maps of sediment sound speed and sound speed ratio across the New England Mud Patch are constructed, revealing spatial trends consistent with independent geological surveys and localized inversion studies. Third, to facilitate sensitivity analysis and potential future physics-informed machine learning, a differentiable implementation of the KRAKEN normal mode solver is developed in the Julia programming language. This enables the efficient and exact calculation of the acoustic field derivatives with respect to environmental parameters using automatic differentiation, providing valuable insights into parameter sensitivities. The results demonstrate that this deep learning framework significantly accelerates geoacoustic inversion while maintaining accuracy. It enables real-time applications and comprehensive spatial mapping previously infeasible, opening new possibilities for underwater acoustic research and bridging data-driven methods with physics-based modeling.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Electroforming Klystron Cavities Using Machined and 3D Printed Mandrels</title>
<link href="https://hdl.handle.net/1721.1/165604" rel="alternate"/>
<author>
<name>Wright, William</name>
</author>
<id>https://hdl.handle.net/1721.1/165604</id>
<updated>2026-04-22T03:07:27Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Electroforming Klystron Cavities Using Machined and 3D Printed Mandrels
Wright, William
Klystron amplifiers are critical for delivering GHz range radio frequency (RF) power for plasma heating. However, only recently has there been significant interest in raising the efficiency of klystrons. Traditional manufacturing methods remain expensive and time-consuming, limiting the development of high-efficiency designs. This thesis explores electroplated sacrificial mandrels as a rapid fabrication method for klystron cavities. Two mandrel types were evaluated: machined aluminum and 3D-printed plastics. RF performance was assessed via measurements of resonant frequency and unloaded quality factor. Cavities from aluminum mandrels showed resonant frequencies within ~25 MHz of predictions and unloaded Q-factors above 5000. Despite plating challenges, 3D-printed mandrels produced cavities with resonant frequencies within ~50 MHz of the target frequency and Q-factors between 3000–5000. These results demonstrate the viability of additive manufacturing for producing functional klystron cavities with reduced fabrication time.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>High-Fidelity Multiphase Modeling of Critical Heat Flux Phenomena in Pressurized Water Reactor Fuel</title>
<link href="https://hdl.handle.net/1721.1/165603" rel="alternate"/>
<author>
<name>Moncuit, Anne</name>
</author>
<id>https://hdl.handle.net/1721.1/165603</id>
<updated>2026-04-22T03:09:00Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">High-Fidelity Multiphase Modeling of Critical Heat Flux Phenomena in Pressurized Water Reactor Fuel
Moncuit, Anne
The prediction of Critical Heat Flux (CHF), the limiting phenomenon of boiling heat transfer, has remained a major challenge since the early development of nuclear reactors. Although several mechanistic models have been proposed, current industry practices still rely heavily on empirical correlations and sub-channel codes, which are limited in scope and accuracy outside of their calibration domain.&#13;
&#13;
This thesis aims to improve CHF prediction methodology, focusing specifically on the Departure from Nucleate Boiling (DNB) under high-pressure conditions representative of Pressurized Water Reactors. This work is conducted using Multiphase Computational Fluid Dynamics in a Reynolds-Averaged Navier-Stokes Eulerian-Eulerian framework. Two sets of boiling closures, CASL-FY19 and MITB, were compared in the commerically available Siemens STAR-CCM+ software. An automated Java-based heat flux incrementation method was developed, and validation was performed against experimental data from both circular and square test sections at pressures between 2 and 13.79 MPa.&#13;
&#13;
The performance of a near-wall void fraction DNB criterion was evaluated and found to consistently underpredict experimental values, with an average error of 11.24 \%. This error was found to be strongly dependent on the mass flux of each case. Different modeling configurations were explored to improve results, revealing that accurate modeling of the void fraction distribution plays a central role in prediction quality. &#13;
&#13;
The technical readiness of a heat partitioning based DNB criterion was also assessed. Two key limitations were identified: first, numerical instabilities due to excessive vapor accumulation near the wall at high heat fluxes; second, a persistently low dry area fraction even under vigorous boiling, attributed to an incomplete modeling of merging dry spots and an inadequate contact angle specification.&#13;
&#13;
The findings underscore the importance of improving near-wall void fraction representation for both DNB detection models. While the heat partitioning based model demonstrates a stronger physical foundation and potential for greater accuracy, the near-wall void fraction model currently offers superior robustness and more consistent results within the framework.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Investigation of Compact Liquid Organic Scintillators for Neutron Spectrum Measurements in Tokamaks</title>
<link href="https://hdl.handle.net/1721.1/165602" rel="alternate"/>
<author>
<name>Lanzrath, Andrew Thomas</name>
</author>
<id>https://hdl.handle.net/1721.1/165602</id>
<updated>2026-04-22T03:08:22Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Investigation of Compact Liquid Organic Scintillators for Neutron Spectrum Measurements in Tokamaks
Lanzrath, Andrew Thomas
Neutron diagnostics play a key role in both magnetic confinement and inertial confinement fusion platforms and will be increasingly more important as those systems continue to improve with more devices achieving burning plasma performance. Many fuel cycles, such as deuterium-tritium, produce neutrons as a reaction product. Since neutrons are electrically charge-neutral, they leave the plasma carrying important information about ion temperature, macroscopic flow velocity, fuel ratios, and more. These neutrons are detected and analyzed with a variety of different methods including flux monitors, emission profile monitors, and spectrometers. Neutron spectrometers work based on different neutron interactions and come in different shapes and sizes. The liquid organic scintillator is one type of neutron spectrometer that has been around for many years and has the benefits of being cost effective and well-characterized. One downside to these detectors is the need for post-processing scripts, commonly referred to as unfolding algorithms, that take the raw energy spectrum comprised solely of Compton and recoil edges to convert it to an energy spectrum containing peaks, which is more convenient for analysis. There are many unfolding schemes being developed and in use, each with its own set of built-in assumptions and sources of error. A new method for liquid organic scintillator spectral analysis that eliminates the need for spectral unfolding is presented and applied to fusion-relevant measurements. It incorporates the AIMS Data AcQuisition (ADAQ) libraries with associated data acquisition and analysis user interfaces and the GEANT4 Monte Carlo particle transport simulation toolkit to produce synthetic detector spectra for EJ-301/NE-213 liquid organic scintillators. Changes to plasma properties cause variations in the synthetic spectra, which can be quantified to develop an analysis workflow that can be used with experimental spectra. The workflow is applied to measure neutron rate, ion temperature, and toroidal rotation velocity. Future work including applying the workflow to other types of organic scintillators and other potential plasma measurements are discussed.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Remote Sensing Architectures for Detecting Small, Non-Cooperative Maritime Vessels</title>
<link href="https://hdl.handle.net/1721.1/165601" rel="alternate"/>
<author>
<name>Mohler, Matthew D.</name>
</author>
<id>https://hdl.handle.net/1721.1/165601</id>
<updated>2026-04-22T03:08:11Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Remote Sensing Architectures for Detecting Small, Non-Cooperative Maritime Vessels
Mohler, Matthew D.
Despite recent advancements in remote sensing technologies, the United States Coast Guard (USCG) and other organizations face significant challenges in detecting, identifying, and monitoring small, non-cooperating vessels at sea. Recent increases in daily maritime activity, both legal and illegal, have only intensified the demand for technological solutions that provide instantaneous position, velocity, and time data (PVTD) in near-real time to support an adequate response. Environmental and operational conditions, such as adverse weather, cloud cover, sea state, signal interference, poor lighting, and extended data processing times, continue to limit sensor performance and reduce the timeliness of PVTD data across these use cases. Although significant research around remote sensing technologies currently exists, there exists limited public research investigating the challenges and potential solutions associated with these specific use cases. Furthermore, the recent trend of more cost-efficient space launch costs and the potential incorporation of AI/ML algorithms and other tools for processing high-volume data sets lend the possibility or opportunity of considering new, larger constellation architectures not previously thought of due to previously high costs. Therefore, this thesis explores the challenges associated with identifying and monitoring small objects at sea and proposes a set of potential system architectures and concepts robust to dynamic environmental and operational conditions through an argument of plausibility that adequately addresses stakeholder needs using preexisting and emerging technologies. An analysis of hundreds of design permutations using a modeling framework capable of evaluating architectures under uncertainty identified three unique architectures that supported sub-hour data collection while maintaining cost-effectiveness. Additionally, a framework for implementation outlines actionable steps such as the phased deployment of potential architecture constellations, integration of AI/ML-enabled functionality to reduce overall latency, leveraging commercial launch partnerships to reduce timelines and costs, and considerations for single- vs. multi-sensor payloads when considering cost performance under uncertainty. Notably, the performance-cost analysis revealed that multi-sensor architectures, despite their common use in modern, small constellation systems, failed to appear on any Pareto frontiers, with system complexity and cost penalties outweighing performance gains, thus reinforcing the value of smaller, simpler single-sensor designs.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Leveraging Innovation-Execution Dynamics to Optimize Portfolio Value</title>
<link href="https://hdl.handle.net/1721.1/165600" rel="alternate"/>
<author>
<name>Crane, James M.</name>
</author>
<id>https://hdl.handle.net/1721.1/165600</id>
<updated>2026-04-22T03:07:12Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Leveraging Innovation-Execution Dynamics to Optimize Portfolio Value
Crane, James M.
Conventional project portfolios often silo execution and capability enhancements, missing dynamic feedback loops that can reveal additional value. This thesis presents a system-aware framework, Innovation Enhanced Project Portfolio Optimization, for evaluating the value uplift of capability enhancements during Project Portfolio Selection. This evaluation includes integrating non-linear growth trajectories with combinatorial sequencing and Pareto-front analysis. Key elements include scenario-based Pareto envelope mapping under varied capital-allocation rules, a no-growth baseline benchmark, and delta-driven Pareto front evaluations to quantify uplift. Applied to a demonstration portfolio, we find that most NPV gains accrue early as growth-rates increase before capex efficiencies and production curves converge to a shared ceiling. Decomposing enhancement value reveals up to 65% NPV uplift from envelope expansion of original sequences plus up to an additional 30% from additional sequence optimization. The amount of uplift is highly dependent upon the evaluation timeframe, enhancement growth rate, business model sensitivity to growth, and capital allocation constraints. Pareto clustering uncovers a core set of projects that consistently dominate, guiding robust funding targets. Practitioners should deploy this method when capability-growth effects materially reshape portfolio priorities or when long-term transformation is at stake. Implementation hinges on reliable business model inputs, calibrated growth-curves, and robust cross-functional discussions that can be enabled by interactive dashboards to visualize envelope shifts and sequence clusters. Iterative “what-if” scenario testing empowers dynamic capital reallocation, transparent performance attribution, and timely investment in high-impact enhancements. Omitting this analysis does not always produce suboptimal outcomes. Organizations may “luck into” optimal sequences when enhancement effects align with intuition. However, without structured modeling, value remains unrecognized and unreproducible, execution contributions can be misattributed, and critical R&amp;D underfunded, limiting organizational learning, adaptation, and the ability to replicate gains.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Feasibility and techno-economic analysis of combining water tower energy storage with geothermal energy systems</title>
<link href="https://hdl.handle.net/1721.1/165599" rel="alternate"/>
<author>
<name>Brown, David A.</name>
</author>
<id>https://hdl.handle.net/1721.1/165599</id>
<updated>2026-04-22T03:08:52Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Feasibility and techno-economic analysis of combining water tower energy storage with geothermal energy systems
Brown, David A.
In some enhanced geothermal systems (EGS), pumps must provide hydraulic pressure in excess of 2000 psi to re-inject the geothermal brine into the reservoir. The parasitic load used to power the injector pumps is significant. Total parasitic load in geothermal plants can range from 15% to 45% of the plant electricity output (Chagnon-Lessard et al., 2020). The thesis hypothesizes that integrating a system of water towers with geothermal systems could provide useful energy storage and reduce overall pumping power costs. This conceptual system would utilize an elevated tank or reservoir to store water during times of low power demand. The stored potential energy could be dispatched by discharging the water from the elevated tank to provide hydraulic pressure to help inject fluid into a geothermal system. Reducing the power required to run the injection pumps could significantly boost the power output of the system during discharge of the stored energy when electricity costs are highest.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multiphase Soft Materials: Local Structuring Sets Global Mechanical Behavior</title>
<link href="https://hdl.handle.net/1721.1/165598" rel="alternate"/>
<author>
<name>Dellatolas, Ippolyti</name>
</author>
<id>https://hdl.handle.net/1721.1/165598</id>
<updated>2026-04-22T03:03:21Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Multiphase Soft Materials: Local Structuring Sets Global Mechanical Behavior
Dellatolas, Ippolyti
Multiphase materials are composed of two or more constituents of different phases whose characteristics can vary widely, leading to a multi-component system with properties that are greater than the sum of its parts. The mechanical behavior of multiphase materials depends on the mesoscale structure of the material, which itself can be affected by the microscopic interactions between the constituents. Multiphase materials are ubiquitous; examples include toothpaste, sandcastles, or photographic film. We here study the macroscopic behavior of multiphase soft materials, focusing on two systems: nanofiller-reinforced composite hydrogels and colloidal gels. Hydrogels and colloidal gels are promising functionalized materials in the biomedical field due to their high water content and biocompatibility. Predicting the behavior of these soft materials under deformation or load is key to fine-tuning their use to specific applications, and relies on elucidating the link between microscopic inter- and intra-phase interactions and macroscopic rheological properties. We present a comprehensive characterization of the mechanical properties of multiphase soft materials, from their linear elastic response to their yielding and failure mechanisms. We first show that the addition of nanofillers to hydrogels can greatly improve the material’s stiffness. We propose that this reinforcement stems from a local densification of the polymer around the nanofillers due to nanofiller-polymer attractive interactions. This densification enhances the stress coupling throughout the material, reduces the gel fluctuations, and ultimately leads to global stiffening of the composite. We then characterize the yielding and failure of the composite hydrogels. In these strain stiffening materials, we identify a transition to macroscopic irreversibility, beyond which the material cannot recover its full nonlinear viscoelastic response. This transition occurs at the strain at which the elastic modulus of the material is maximal. We reveal that the permanent damage is due to the breakage of bonds that are responsible for the material’s strain stiffening response. Finally, we relate the nonlinear mechanical response of two types of colloidal gels to the microscopic characteristics of their yielding, showing that colloidal gels of different interaction strengths exhibit distinct modes of failure. This work provides a comprehensive understanding of the behavior of multiphase soft materials under both small and large deformations. It establishes a framework that is critical to tailoring these materials for specific engineering applications and showcases the key effect of local mechanisms in the global mechanical response of materials.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Effects of Flow Obstacles on Single-Phase Heat Transfer&#13;
and CHF in a Narrow Rectangular Channel</title>
<link href="https://hdl.handle.net/1721.1/165597" rel="alternate"/>
<author>
<name>Pisinger, Mateo</name>
</author>
<id>https://hdl.handle.net/1721.1/165597</id>
<updated>2026-04-22T03:09:07Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Effects of Flow Obstacles on Single-Phase Heat Transfer&#13;
and CHF in a Narrow Rectangular Channel
Pisinger, Mateo
Mixing vane geometries enhance the fuel-to-coolant heat transfer within nuclear reactors, which allows higher power ratings for reactors and improves their economics. At the same time, their presence may affect the critical heat flux (CHF), the upper limit to heat extraction rate of a reactor. Numerical simulations often do not accurately reflect the changes in CHF when mixing vanes are included in nuclear fuel assemblies, suggesting that the CHF models are not resolving the relevant boiling phenomena present with mixing vane geometries. Thus,&#13;
there is a need for experimental data to inform future simulations for more accurate results.&#13;
This thesis aims to address this need by modifying an existing experimental apparatus to reproduce and measure the momentum and thermal transport of flows when perturbed by flow obstacles. The capabilities of the apparatus were demonstrated through experiments comparing heat transfer characteristics of single-phase flow in an empty rectangular channel and in a channel with a flow obstacle. Comparisons with simulations of the experiment were done to highlight the ability of simulation tools to elucidate some of the hydrodynamic behavior of fluids near obstacles responsible for the enhancement of heat transfer.&#13;
Initial two-phase experiments were also done to characterize the changes in CHF in the presence of a flow obstacle, which when compared to an empty flow channel show a degradation of CHF at low mass fluxes and an enhancement at high mass fluxes. However, future research is needed to understand the reason for these changes.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interphase Momentum Closure Analysis for Multiphase Computational Fluid Dynamics of Horizontal Bubbly Flow</title>
<link href="https://hdl.handle.net/1721.1/165596" rel="alternate"/>
<author>
<name>Henderson, Philip</name>
</author>
<id>https://hdl.handle.net/1721.1/165596</id>
<updated>2026-04-22T03:10:21Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Interphase Momentum Closure Analysis for Multiphase Computational Fluid Dynamics of Horizontal Bubbly Flow
Henderson, Philip
Multiphase Computational Fluid Dynamics (M-CFD) offers a high-fidelity method for analysis of safety and performance in helical coil steam generators (HCSGs). Of the M-CFD frameworks, Eulerian multiphase (EMP) is the industrial standard, its efficacy determined by the ability of implemented closures to represent physical phenomena. Research has overwhelmingly focused on the development and validation of EMP closures for vertical bubbly flow, rather than the near-horizontal orientations of HCSGs. Advancement of horizontal bubbly flow modeling would provide a foundation for modeling HCSGs, as well as bubbly flows more broadly.&#13;
Evaluation of conventional closures for vertical flow indicates that a similar approach is generally inappropriate for horizontal configurations. Lift and drag-based turbulent dispersion closures control the radial void distribution in vertical flows, both of which are based on slip velocity and bubble shape due to deformation. Analyses demonstrate these are both negligible in horizontal flows, thus lift and drag-based turbulent dispersion play at most a minor role. Analysis also shows that the standard EMP momentum equations are erroneous, and an alternative stress term for the dispersed phase is recommended for inclusion. In the absence of established approaches, a rarely discussed closure, virtual mass stress (VMS), is explored. VMS is affected by a range of factors: virtual mass coefficient, turbulence response coefficient and turbulence anisotropy. The performance of VMS and the influence of these factors, along with the recommended particle-averaged stress term, were investigated by modeling flows in microgravity, horizontal and vertical configurations.&#13;
Modeling results suggest implementation of VMS has potential to capture void fraction distributions, however it remains strongly influenced by the aforementioned factors. Of these, the turbulence response coefficient yields the largest effects, and cannot be reliably predicted by available models. Further work into the turbulence modeling of both phases is required to realize the potential of VMS and accurately model horizontal bubbly flow.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fantasy IDEs: Explorations in the IDE</title>
<link href="https://hdl.handle.net/1721.1/165595" rel="alternate"/>
<author>
<name>Stiles, Charlotte</name>
</author>
<id>https://hdl.handle.net/1721.1/165595</id>
<updated>2026-04-22T03:07:25Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Fantasy IDEs: Explorations in the IDE
Stiles, Charlotte
This thesis introduces "Fantasy IDEs," a new paradigm for integrated development environments (IDEs) that reimagines coding as a performative, gestural practice. While existing approaches to making programming more accessible focus on simplification or visual abstraction, this work transforms the IDE itself into a medium for creative expression. Through experimental interfaces that integrate conversational AI, real-time visual feedback, and audience engagement, I demonstrate how development environments can transcend their utilitarian origins to become dynamic spaces for artistic exploration. I do this by addressing the mismatch between artistic values and ubiquitous software engineering tools and the technical barriers that prevent creative practitioners from focusing on expression, while focusing on the need for immediate feedback in creative processes. Through live performance contexts and audience interaction, the Fantasy IDEs demonstrate how programming environments can become more wild, unpredictable, and creative while maintaining expressive power. This research contributes to the future of creative coding environments by showing how the interface itself can become a performative instrument, ultimately inspiring a more playful and accessible relationship with computation.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Learning to Teach: Models for Semantic and Adaptive Personalization of AI Tutors</title>
<link href="https://hdl.handle.net/1721.1/165594" rel="alternate"/>
<author>
<name>Grover, Ishaan</name>
</author>
<id>https://hdl.handle.net/1721.1/165594</id>
<updated>2026-04-22T03:06:21Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Learning to Teach: Models for Semantic and Adaptive Personalization of AI Tutors
Grover, Ishaan
AI tutoring systems have the potential to make education affordable, equitable, and effective. However, despite recent advances in large language models (LLMs), mainstream use of AI as tutors remains limited due to a lack of pedagogically grounded frameworks. Previous work has shown that effective tutoring involves not only linguistic fluency, but also the ability (i) to effectively engage in open-domain dialog to build rapport and (ii) adapt dynamically to feedback cues from a learner. &#13;
&#13;
This thesis addresses these limitations by providing two key contributions. First, we study the cognitive and psychological processes that humans use when engaging in conversations. We propose a novel probabilistic approach using Markov Random Fields (MRF) to augment existing closed-source and open-source LLMs (GPT-4o, Gemini, and LLaMa) for improved next-utterance generation. Using human evaluations, we show that our augmentation approach significantly improves the performance of existing state-of-the-art LLMs for open-domain conversational agents. &#13;
&#13;
Next, we explore the challenge of dynamic pedagogical adaptation. Learners provide feedback in different forms (facial expressions, gaze, questions, seeking help, etc.), and the interpretation of this feedback may differ from learner to learner. However, existing approaches like reward shaping, policy shaping, and preference-based RL assume a static interpretation of feedback labels. To this end, we present an adaptive reinforcement learning algorithm that generalizes to multiple labels and autonomously interprets the meaning of feedback cues during online deployment. &#13;
&#13;
We show that policy shaping is a special case of adaptive RL under certain conditions. In addition, through data from human subjects, we show that the algorithm can learn from feedback cues and outperform any static interpretation in a simulated environment. We provide rigorous studies showing that adaptive RL is invariant to noise and bias in feedback cues, as well as the choice of MDP. We further outline the conditions for employing such an algorithm. Finally, we integrate our adaptive RL algorithm with an existing AI tutor for Python programming to enable it to adapt to each user.  We study the characteristics of our algorithm against baseline RL in real-world tutoring systems and present our findings and recommendations for future iterations. &#13;
&#13;
By integrating cognitive modeling and adaptive RL into AI tutors, this thesis contributes to the design of intelligent, personalized, and pedagogically grounded educational systems.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Characterization of the DIII-D High-Field Side Scrape-Off Layer and Implications for High-Field Side Lower Hybrid Current Drive</title>
<link href="https://hdl.handle.net/1721.1/165593" rel="alternate"/>
<author>
<name>Leppink, Evan</name>
</author>
<id>https://hdl.handle.net/1721.1/165593</id>
<updated>2026-04-22T03:05:25Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Characterization of the DIII-D High-Field Side Scrape-Off Layer and Implications for High-Field Side Lower Hybrid Current Drive
Leppink, Evan
High-field side lower hybrid current drive (HFS LHCD) is a potential candidate to provide efficient, non-inductive, off-axis current drive in tokamaks for steady-state operation, stability control, and/or access to advanced tokamak scenarios. The first experimental test of HFS LHCD has begun on the DIII-D tokamak. LHCD is known to be sensitive to scrape-off layer (SOL) conditions local to the coupler, and to characterize the HFS SOL in preparation for the high-power HFS LHCD experiments, a high-field side reflectometer was installed on DIII-D. The reflectometer operates in the 6-19 GHz range in O-mode polarization, corresponding to a measured density of 4.5e17-4.5e18 per cubic meter. A HFS SOL measurement database of over 600 DIII-D discharges has been constructed and includes HFS LHCD target plasmas, such as high q-min discharges. Furthermore, the effect of ELMs and magnetic configuration has been studied in detail. Machine learning techniques have also been applied to this database, allowing for the prediction of HFS SOL density profiles from global discharge parameters such as plasma current, plasma density, and plasma shaping parameters. Simulation-based inference (SBI) techniques were used to infer HFS SOL turbulence characteristics from reflectometer density profile measurements. Finally, experimental data, turbulence inferences, and machine learning regression enable accurate prediction and optimization of HFS LHCD coupler loading, which is calculated using 3-D finite element full-wave codes.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Koopman Dynamic Modeling and Control for Robotic Systems Making and Breaking Contact</title>
<link href="https://hdl.handle.net/1721.1/165592" rel="alternate"/>
<author>
<name>O'Neill, Cormac</name>
</author>
<id>https://hdl.handle.net/1721.1/165592</id>
<updated>2026-04-22T03:06:27Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Koopman Dynamic Modeling and Control for Robotic Systems Making and Breaking Contact
O'Neill, Cormac
Controlling robots that dynamically engage in contact with their environment is a pressing challenge. Whether a legged robot making-and-breaking contact during locomotion, or a manipulator grasping objects, contact is everywhere. Unfortunately, the switching of dynamics at contact boundaries makes practical control difficult. Applying predictive control techniques to systems with contact results in non-convex optimization problems, which are notoriously difficult to solve online. In this work, I show how the use of a compliant contact model can enable the application of Koopman linearization techniques to systems with contact. This enables the construction of fast and reactive controllers for online decision making.&#13;
&#13;
This approach is first demonstrated on the planar pushing task, which captures the key challenges of switching contact modes and non-prehensile manipulation. I show that a Koopman-based controller can discover dynamic control policies without any sequence of contacts being defined in advance, while still allowing for operation at real-time rates. I highlight the importance of compliance in enabling Koopman theory for contact dynamics, and also explore how mechanical compliance can be co-designed with the controller for optimal performance. Varying the compliance of a robotic manipulator results in a trade-off between the responsiveness of the system and the accuracy of the linearized model being used for control. I study the robustness of this controller to modeling errors in friction, and present a friction-aware extension that enables adaptation to online friction estimates. &#13;
&#13;
A novel framework for constructing Koopman approximations is also developed for systems with contact dynamics, and compared to existing approaches for a range of autonomous systems. By combining radial basis functions (RBFs) and Deep Koopman Networks (DKNs), we observe improved prediction accuracy for complex systems, while also highlighting the impressive capabilities of completely learning-based DKN approaches.&#13;
&#13;
Finally, we look at segmented dynamics more generally. A simple problem - inspired by a hot air balloon that must navigate alternating wind currents - is used to probe how Koopman models enable predictive control in the proximity of mode boundaries. We show that linear approximations of the global dynamics, as afforded by Koopman, can allow for Koopman MPC to outperform nonlinear (and non-convex) alternatives that explicitly represent the true segmented dynamics with a mixed-integer formulation.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Caresets and the Experimental Public Co-Design of Tomorrow</title>
<link href="https://hdl.handle.net/1721.1/165591" rel="alternate"/>
<author>
<name>Aydemir, Deniz</name>
</author>
<id>https://hdl.handle.net/1721.1/165591</id>
<updated>2026-04-22T03:08:39Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Caresets and the Experimental Public Co-Design of Tomorrow
Aydemir, Deniz
Participatory planning can help cities make better policy and planning decisions. An effective participatory planning framework must represent complex urban systems (compositional), compute Pareto-optimal solutions (computational), and incorporate residents into the decision-making process (collaborative).&#13;
&#13;
We build a mathematical language using partially ordered sets to formally describe care in three forms: preference, ethics, and design. We then create a compositional, computational, and collaborative framework for participatory planning called the Experimental Public Co-Design of Tomorrow (EPCODOT). This framework adapts monotone co-design to work with our language of care and extends the approach with a collaborative interface. We demonstrate EPCODOT's capabilities first by modeling an MIT Senseable City Lab research project on trade-offs between data privacy and urban well-being, and then by modeling its potential application with a real public project in Durham, North Carolina. We provide a software prototype at epcodot.com. &#13;
&#13;
This work develops two interconnected contributions: a mathematical language of care connecting applied category theory, decision theory, and ethics; and EPCODOT, a software tool enabling participatory planning for researchers, communities, and cities. Future work should pursue four directions: exploring additional category-theoretic structures within the mathematical language, formalizing connections to social choice and decision theory, testing EPCODOT directly with communities, and enhancing the computational capabilities of the framework's monotone co-design adaptation.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Sociotechnical Systems Analysis of Enterprise Robotics Innovation</title>
<link href="https://hdl.handle.net/1721.1/165590" rel="alternate"/>
<author>
<name>Jones, William Pierce</name>
</author>
<id>https://hdl.handle.net/1721.1/165590</id>
<updated>2026-04-22T03:10:16Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A Sociotechnical Systems Analysis of Enterprise Robotics Innovation
Jones, William Pierce
Mobile intelligent robotics offer the opportunity for integrated energy companies to remove personnel from hazardous operating environments and increase working efficiencies, yet many corporate innovation groups face significant headwinds resisting scaled robotics deployments. This thesis analyzes the sociotechnical systems that comprise an enterprise innovation group, using a newly established real-world robotics organization as a case study. Guided by the Architecting Innovative Enterprise Strategy (ARIES) framework, this study explores how an intentionally modified enterprise organizational architecture can enable large-scale and sustained robotics development and deployment activities across diverse operating environments and within a complex corporate context. System artifacts including stakeholder salience maps, value flow networks, design structure matrices, candidate architecture tradespaces, and epoch-based future proof tests were synthesized from a series of surveys, interviews, and virtual observations. Analysis revealed specific recommendations for the focus enterprise including: a need for an institutionalized vision; integration and incorporation of parallel and adjacent functions; an embedded agent model; standardized models supporting consistent customer experiences; and integral architectural reevaluation structures. No single proposed architectural transformation dominates for all scenarios and envisioned futures; accordingly, a broader approach of selecting architectural models tailored to a clarified vision and with embedded reconfiguration flexibility is recommended. This study demonstrates that enterprise architecture is a critical factor governing the pace and scale of mobile robotics adoption in industrial environments and offers a readily transferable systems-thinking approach for broader innovation groups operating in complex ecosystems.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Leveraging Temporal Fusion Transformers and Domain-Specific LLMs for Real-World Industrial Sensor Forecasting and Decision Support</title>
<link href="https://hdl.handle.net/1721.1/165589" rel="alternate"/>
<author>
<name>Ben Yosef, Ori</name>
</author>
<id>https://hdl.handle.net/1721.1/165589</id>
<updated>2026-04-22T03:07:32Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Leveraging Temporal Fusion Transformers and Domain-Specific LLMs for Real-World Industrial Sensor Forecasting and Decision Support
Ben Yosef, Ori
In process industries, large volumes of sensor data are generated continuously, yet much remains underutilized for proactive decision-making. This thesis explores a novel architecture that combines deep learning and large language models (LLMs) to forecast, interpret and prevent process threshold violations in an industrial process facility. A Temporal Fusion Transformer (TFT) model was trained on 3 months of real-world, multivariate sensor data (1-minute resolution across 31 sensors) to predict 12-minute-ahead process parameter exceedances. Forecast outputs were passed to a costume-built domain-specific GPT-4.1 model, configured using prompt engineering, graph interpretation capabilities, and a retrieval-augmented generation (RAG) system incorporating expert literature and process knowledge. The GPT model synthesized probabilistic forecasts into well-structured team-based Five Whys root cause analyses, where virtual domain experts questioned each other to refine the diagnosis, a long term mitigation plan to remove the root causes found,   and simulation-driven, per-unit prevention plan, generated by testing alternative process settings with the trained deep learning model and selecting the minimal production disturbance configuration that prevented the predicted violation, all while leveraging domain-specific knowledge to ensure operational feasibility and engineering trustworthiness by explicitly referencing authoritative sources from its RAG library, such as procedures and technical text books, to maintain compliance with stakeholder needs. Evaluation showed that GPU-trained deep learning model significantly outperformed CPU-trained equivalents in mean quantile loss metrics. Subject matter expert evaluation of the LLM’s responses indicates that the LLM’s insight quality improved as more domain knowledge was added leading to greater specificity, unit level differentiation in recommendations. This dual-model system demonstrates a scalable approach to combining forecasting and interpretability in one pipeline, offering preventative, actionable, domain-specific support for engineers, operators, and managers in complex industrial environments.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evaluating the Influence of Surface Characteristics on Boiling and CHF Predictions with the MITB Model in Subcooled Flows</title>
<link href="https://hdl.handle.net/1721.1/165588" rel="alternate"/>
<author>
<name>Ding, Alice</name>
</author>
<id>https://hdl.handle.net/1721.1/165588</id>
<updated>2026-04-22T03:08:36Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Evaluating the Influence of Surface Characteristics on Boiling and CHF Predictions with the MITB Model in Subcooled Flows
Ding, Alice
The MIT Boiling Model (MITB) offers a detailed physics-based alternative to the empirical, correlation-based approaches of subchannel codes which are still the nuclear industry standard while limited in general applicability. In contrast, MITB is designed for integration into multiphase computational fluid dynamic (M-CFD) frameworks, enabling detailed resolution of three-dimensional effects introduced by features such as spacer grids and mixing vanes. When coupled with models for critical heat flux (CHF), MITB enhances predictive capabilities for CHF onset estimation. While its potential has been demonstrated in capturing boiling mechanisms and CHF behavior, an important challenge remains in establishing model sensitivity to surface characteristics. These characteristics play a central role the ebullition cycle, heterogeneously affecting bubble nucleation and the consequent bubble dynamics on the boiling surface. As dominant effects, surface roughness impacts nucleation site density and bubble formation, while wettability affects bubble contact angles and their nucleation and detachment dynamics.&#13;
&#13;
In this study, the predictive capabilities of MITB were evaluated based on its ability to capture the effects of surface characteristics, such as roughness and wettability, on boiling behavior. The contribution of surface properties to the model's ability to predict CHF was also examined. The MITB model was first implemented in a point-averaged form to assess the sensitivity of individual closure models to varying flow conditions and surface attributes. Closure relations for bubble departure diameter (BDD), bubble departure frequency (BDF), and nucleation site density (NSD) were selected based on their physical consistency and accuracy in predicting boiling curves, as validated against experimental data from the MIT flow boiling loop at low-pressure conditions. The influence of localized flow conditions, particularly void fraction distributions, was also considered to assess the impact of the extension of the MITB formulation to a M-CFD framework. &#13;
&#13;
In the work, two different CHF prediction methods were tested: a mechanistic and physically consistent surface-dependent model based on the work of Demarly and a more traditional empirical local void-fraction-based criterion. Comparative analysis reveals that both models tend to underpredict CHF, particularly for highly wettable rough surfaces. The mechanistically-based model demonstrates lower overall error, but has significant sensitivity to the treatment of the bubble growth time parameter. The void-fraction-based criterion method, though less accurate, offers improved computational robustness.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Symmetries in Neural Network Functions and Parameters</title>
<link href="https://hdl.handle.net/1721.1/165587" rel="alternate"/>
<author>
<name>Lim, Derek</name>
</author>
<id>https://hdl.handle.net/1721.1/165587</id>
<updated>2026-04-22T03:04:54Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Symmetries in Neural Network Functions and Parameters
Lim, Derek
Modern neural networks are large, complex objects, which can be difficult to study and work with. In this thesis, I analyze and improve neural networks from the perspective of symmetries, with particular focus on function symmetries and parameter symmetries. Function symmetries are transformations of the input that lead to predictable changes in the output, which can be enforced in neural network architectures to improve performance on data with symmetry structures. Parameter symmetries are transformations of parameters that leave the underlying neural network function unchanged, and they have impacts on various empirical phenomena in neural networks. In Part I of this thesis, I focus on function symmetries, and develop new methods and analysis techniques for equivariant neural networks that have function symmetries baked into their architectures. I apply these techniques primarily on eigenvector-valued data, resulting in the first provably expressive neural network architectures that respect the symmetries of eigenvector data. In Part II, I focus on parameter-symmetries, and analyze their impact in various empirical phenomena of neural networks, as well as their impact in the open-weight ecosystem of models with publicly-shared parameters. In Part III, I consider both function and parameter symmetries to construct metanetworks: models that take in the parameters of other neural networks as input. Since the input to metanetworks are parameters, I develop metanetworks that are invariant or equivariant to the parameter symmetries of the input networks. All in all, my work shows that accounting for function and parameter symmetries is both theoretically and empirically beneficial across diverse types of data, learning tasks, neural network architectures, and other parts of the deep learning pipeline.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimizing the Use of Enriched Lithium in Fusion Reactor Blankets: A Neutronics-Based Economic Analysis</title>
<link href="https://hdl.handle.net/1721.1/165586" rel="alternate"/>
<author>
<name>Webber, Logan D.</name>
</author>
<id>https://hdl.handle.net/1721.1/165586</id>
<updated>2026-04-22T03:07:42Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Optimizing the Use of Enriched Lithium in Fusion Reactor Blankets: A Neutronics-Based Economic Analysis
Webber, Logan D.
Deuterium-tritium (D-T) fusion is the principal reaction of interest for near-term fusion energy development. Because tritium, the third isotope of hydrogen, occurs naturally only in trace amounts, it must be produced onsite to sustain the fuel cycle of any fusion reactor utilizing the D-T pathway. This is typically achieved through neutron capture reactions with lithium in the tritium breeding blanket (TBB). In this regard, it is deuterium and lithium, not tritium, that constitute the primary resources required for D-T fusion. Lithium-6 (Li-6) more readily breeds tritium across most neutron energies than lithium-7 (Li-7); however, its natural abundance is only ~7.5%. This has motivated TBB designs that require various levels of Li-6 enrichment. However, the supply chains and industrial capacity needed to produce enriched Li-6 at scale do not currently exist. To address this critical barrier to fusion deployment, this thesis evaluates the neutronics performance, shielding implications, and economic tradeoffs of lithium-based breeder materials for use in TBBs. A particular focus is placed on the role of Li-6 enrichment. A comprehensive modeling workflow was developed to assess five candidate breeder materials: 2LiF-BeF2 (“FLiBe”), the eutectic Li17Pb83 (“PbLi”), pure lithium metal, lithium titanate (Li2TiO3), and lithium orthosilicate (Li4SiO4). A simplified cylindrical blanket model was constructed to enable straightforward comparative analysis across a broad parameter space of enrichment and breeder thickness, with geometry loosely approximating the proposed ARC reactor, designed at the Massachusetts Institute of Technology. Neutronics simulations were conducted using OpenMC to calculate the tritium breeding ratio (TBR) for over 800 blanket configurations. A one-dimensional analytical model was then applied to estimate the minimum shielding thickness required to protect the toroidal field (TF) coils for each blanket configuration, based on neutron leakage fraction tallies and conservative fluence limits for REBCO high-temperature superconductor (HTS) tape. These results were integrated into a materials-based economic analysis to quantify tradeoffs between tritium production, Li-6 requirements, and system costs. Key findings include the identification of material-specific scaling behaviors and diminishing returns in TBR performance with increasing enrichment and thickness. FLiBe demonstrated robust performance at minimal enrichment with compact radial builds. In contrast, PbLi offered higher peak TBRs while requiring less lithium by mass, but at the cost of greater enrichment and shielding. Lithium metal exhibited flexible performance across enrichment levels, albeit with significant performance sensitivity and greater technical uncertainty under practical constraints. Across all materials, economically optimal configurations were found to strike a balance between tritium self-sufficiency and Li-6 minimization, while maintaining compact geometry. These insights provide actionable guidance for fusion reactor blanket design under existing Li-6 supply constraints.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Advanced Federated Learning Algorithms Leveraging Selective Forgetting for Data-Constrained Environments</title>
<link href="https://hdl.handle.net/1721.1/165585" rel="alternate"/>
<author>
<name>Alotaibi, Abdulrahman</name>
</author>
<id>https://hdl.handle.net/1721.1/165585</id>
<updated>2026-04-22T03:05:49Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Advanced Federated Learning Algorithms Leveraging Selective Forgetting for Data-Constrained Environments
Alotaibi, Abdulrahman
Federated Learning (FL) enables collaborative training of machine learning models without centralizing raw data, offering a practical framework for real-world AI. Yet real-world deployments face challenges in data-constrained environments, where client datasets are both limited and heterogeneous, as well as from broader adversarial risks and complex regulatory requirements. This dissertation addresses these challenges by integrating Knowledge Evolution (KE) and Later-Layer Forgetting (LLF) into the FL paradigm, and by analyzing their combined impact on security and compliance. The proposed FL-KE and FL-LLF frameworks introduce selective forgetting mechanisms that prune less salient representations, reallocate model capacity, and enable iterative refinement over generations. Experimental evaluations on diverse image classification datasets, including Flower-102, CUB-200, MIT-67, and Stanford Dogs, demonstrate accelerated convergence, improved generalization, and robustness under data scarcity compared to baseline FL. Beyond performance, this work examines the security implications of FL-KE and FL-LLF through a comprehensive threat model covering poisoning, backdoor, inference, free-rider, Sybil, and Byzantine attacks. Analysis reveals that selective forgetting can reduce the persistence of malicious updates, mitigating certain attack vectors while coexisting with robust aggregation and secure aggregation protocols. Finally, this dissertation explores the intersection of FL and data privacy regulations through an empirical survey of stakeholders across the Gulf Cooperation Council (GCC) region. The findings reveal a gap between regulatory awareness and operational compliance, as well as opportunities for FL especially in its KE and LLF enhanced forms to align with legal principles of data minimization, purpose limitation, and user rights. By combining methodological advances, defenses against adversarial threats, and attention to regulatory requirements, this work offers a framework for building the next generation of federated learning systems that are effective, secure, and compliant in varied settings. These contributions also support the broader goal of trusted and safe machine learning, where the demand for robust, data-sharing, and regulation-aware systems is central to preventing harmful outcomes, promoting fairness, and protecting the integrity of AI in sensitive fields such as healthcare, finance, and government. The findings presented here carry direct implications for deploying federated AI in high-stakes environments and highlight promising directions for future research at the intersection of machine learning, security, and policy.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Intuitive but Wrong: Uncovering Student Misconceptions About Force and Motion With Bayesian Item-Response Methods</title>
<link href="https://hdl.handle.net/1721.1/165584" rel="alternate"/>
<author>
<name>Segado, Martin Alan</name>
</author>
<id>https://hdl.handle.net/1721.1/165584</id>
<updated>2026-04-22T03:01:52Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Intuitive but Wrong: Uncovering Student Misconceptions About Force and Motion With Bayesian Item-Response Methods
Segado, Martin Alan
Students often enter our classrooms with many preexisting beliefs about force and motion learned through a lifetime of hands-on experience. Unfortunately, many of these beliefs are not correct, leading to a wide variety of misconceptions about mechanics concepts. Such misconceptions are often highly resistant to traditional instruction and can seriously impede deep conceptual learning in mechanical engineering and other STEM fields; it is therefore essential to develop ways of understanding, measuring, and correcting these in our students. Previous efforts to address this problem have led to the development of research-based multiple-choice tests such as the Force Concept Inventory (FCI), a pioneering instrument whose incorrect answer choices ("distractors") were mined from student responses and implicitly encode many common misconceptions. While numerous studies have undertaken to explore the structure of the FCI by analyzing student responses, very few of these make full use of the information present in the students' specific choice of distractors, and those that do are limited in the types of associations they are able to find.&#13;
&#13;
This thesis demonstrates that, by combining highly-flexible psychometric models, modern Bayesian inference methods, and traditional factor analysis techniques to analyze a large dataset of student responses to the FCI, it is possible to discover a much greater number of interpretable student misconceptions than previously found, and to do so without prior labeling of test content beyond identifying the correct answers. Our approach is based on the Multidimensional Nominal Categories IRT Model (MNCM) which leverages information present in both correct and incorrect student responses to identify a plausible set of latent (unobserved) student traits governing response behavior. To provide robustness to infrequent responses and guard against overfitting, we implement this as a Bayesian model with hierarchical priors; approximate variational inference methods enable this approach to scale to larger datasets, and standard factor rotation techniques facilitate the discovery of small subsets of distractors most likely to encode real psychological constructs.&#13;
&#13;
We apply our method to a dataset comprising both pre- and post-instruction FCI submissions from ~17,000 students across eight North American colleges and universities. We take a principled approach to rotation, comparing both subjective interpretability and several indicators of solution quality, including similarity of our results across both schools and instruction as well as a metric of overall simplicity (the hyperplane count). Our results inform the generation of several candidate solutions, which we further examine for robustness via non-parametric bootstrapping and from which we choose a subset of 27 unique, partly-overlapping sets of distractors for additional investigation. By examining both the content of the most heavily-loaded distractors in these sets and the broader context of their associated questions, we find 22 partly-overlapping dimensions corresponding to misconceptions and misunderstandings. Most of these are consistent with prior research on specific misconceptions in introductory mechanics, and two appear to be novel. We further observe that many of our misconceptions correspond to previously-accepted historical theories about force and motion.&#13;
&#13;
Finally, we present a simple method for assessing the prevalence of each misconception and apply it to our data both before and after instruction. We identify two major classes of misconceptions---standard and naive---which differ both in which students they affect and in how resistant they are to instruction. Our results support and extend prior findings about misconceptions by showing that (1) it is primarily the standard misconceptions which are most resistant to instruction, while naive misconceptions appear better remediated in our data; and that (2) current instruction appears to be noticeably less effective in dispelling misconceptions in learners with average or below-average pre-test scores, further underscoring the need for improved instructional techniques. Importantly, though, our work also provides educators and researchers alike with a new tool to address this challenge. By providing a catalog of existing misconceptions as well as the means to discover and measure new ones, we hope this research will lead to the development of focused interventions for specific misconceptions, aid in the evaluation of new instructional techniques, and provide teachers with a clearer lens through which to understand and adapt to the students in their classrooms.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>RF-Visual Perception with Applications to Mobile Sensing, Robotics, &amp; Augmented Reality</title>
<link href="https://hdl.handle.net/1721.1/165583" rel="alternate"/>
<author>
<name>Boroushaki, Tara</name>
</author>
<id>https://hdl.handle.net/1721.1/165583</id>
<updated>2026-04-22T03:05:53Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">RF-Visual Perception with Applications to Mobile Sensing, Robotics, &amp; Augmented Reality
Boroushaki, Tara
Mobile and wireless sensing technologies play a critical role in Internet of Things, Augmented Reality (AR), robotics, environmental monitoring, and human health monitoring. Despite their ubiquity, each of today’s mobile sensing technologies is limited in a fundamental way: cameras can capture high-resolution images but are limited to the line of sight and cannot sense behind occlusions; wireless sensing (e.g., using WiFi or Bluetooth) can traverse occlusions but has limited sensing resolution; inertial sensors can track with high accuracy and speed but suffer from spatiotemporal drift.&#13;
This thesis introduces algorithms, learning models, and systems to fuse different sensing modalities, particularly radio frequency (RF) and cameras. However, RF and vision are inherently two different sensing modalities, which makes their fusion a complex task. To address this challenge, this thesis leverages and develops advanced signal processing techniques and mathematical modeling that combine different sensing modalities. As a result, it unlocks new capabilities for IoT-connected and mobile systems, such as AR headsets and robots, and enables new perception, interaction, and manipulation tasks.&#13;
The thesis has three core components, the first focuses on RF-Visual perception for cyber-physical systems. We present the design, implementation, and evaluation of RFusion, a robotic system that can search for and retrieve RFID-tagged items in line-of-sight, non-line-of-sight, and fully-occluded settings. We then introduce FuseBot, a robotic system that rather than requiring all target items in a pile to be RFID-tagged, leverages the mere existence of an RFID-tagged item in the pile to benefit retrieval of both tagged and untagged items.&#13;
The second component focuses on RF-Visual perception for cyber-human systems. We present the design, implementation, and evaluation of X-AR, an AR system with non-line-of-sight perception. X-AR augments AR headsets with RF sensing to enable users to see things that are otherwise invisible to the human eye or to state-of-the-art AR systems. We then explore how to exploit synergies between AR headsets and RFID localization to improve both user experience and localization accuracy. Using fundamental mathematical formulations for RFID localization, we derive confidence metrics and display guidance to the user to improve their experience and enable them to retrieve items faster.&#13;
&#13;
The final component of this thesis answers the question of how we can perform non-line-of-sight perception without any RF-tags altogether. To do this tag-less perception, we use millimeter wave (mmWave) signals and off-the-shelf mmWave radars. We introduce a real-world dataset of mmWave images of everyday objects and an open-source simulation tool that can be used to generate synthetic mmWave images for any 3D triangle mesh. We demonstrate the usefulness of this dataset and simulation tool in multiple perception tasks in non-line-of-sight.&#13;
The combination of these three component introduces now sensing modalities that opens up important capabilities for a variety of applications in manufacturing, warehousing, logistics, and supply chain as well as Human Computer Interaction (HCI) and Human Robot Interaction (HRI).
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A New Town Scale Consensus: Propagational Voting in Urban Decision Making</title>
<link href="https://hdl.handle.net/1721.1/165582" rel="alternate"/>
<author>
<name>Sakai, Yasushi</name>
</author>
<id>https://hdl.handle.net/1721.1/165582</id>
<updated>2026-04-22T03:06:06Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A New Town Scale Consensus: Propagational Voting in Urban Decision Making
Sakai, Yasushi
Cities represent spaces where diverse populations negotiate collective living, creating potential for both conflict and cooperation. The city or "Polis" triggered the term "Polites" (one lives in cities), which the term we know "Politics" refers to techniques and activities to live together including building consensus. This is not metaphorical, we today have exactly this issue when urban planning processes often face a tension: while communities express broad support for development and housing, they frequently resist specific local projects. Current community engagement mechanisms compound this problem by reducing complex, layered citizen concerns into simplified decisions made by a few officials/commissioners, while at the same time, creating procedural bottlenecks and gridlock. In Boston, even small development projects face years of review time, with community input processes that amplify rather than resolve underlying contradictions between collective need and individual experience.&#13;
This thesis introduces Propagational Voting (PV), a voting mechanism designed to capture the organic, multi-layered way people naturally reason about civic issues. PV allows participants to split their single unit of voting power across multiple targets at different levels of abstraction from specific policy proposals to broader values while enabling delegation to trusted individuals, groups, or institutions. This method accommodates plurality in engagement styles: direct decision-making, selective delegation, and flexible resolution levels that mirror how people actually think and relate in small-group settings.&#13;
Basing Suzuki Ken’s original concept, this thesis further develops the concept through both theoretical modeling and empirical testing via workshops and surveys focused on urban planning challenges. The system not only aggregates preferences but reveals how influence flows through trust networks, providing insights into decision-making structures. Chapter 2 to 4 establishes the theoretical and computational foundations of PV, while Chapter 5 to 7 explores its application to real urban planning scenarios through case-based analysis and participatory testing. This foundational thesis do have limitations, yet these gaps point toward creative solutions including AI-augmented delegation with safety guardrails, and dynamic consensus mechanisms applicable to real urban issues that adapt across multiple abstraction levels. This work presents a foundational framework designed for structured exploration at smaller civic scales, with empirical testing demonstrating feasibility while identifying pathways for broader application.&#13;
Voting should go hand in hand with the deliberation and co-design process. The core contribution bridges deliberation and voting by embracing rather than reducing complexity. Its easier to dismiss contradictory responses as obstructive, PV treats them as natural and valid expressions of layered reasoning. This foundational framework, designed for structured civic experimentation, points toward more peaceful, pluralistic governance treating democracy as a continuous direction of improvement toward systems that honor natural patterns of trust and contextual organic decision making; to help live together in cities.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Physics-based and Machine Learning Hybrid Modeling of Oil Transport and Oil Consumption in Internal Combustion Engines - a Digital Twin</title>
<link href="https://hdl.handle.net/1721.1/165581" rel="alternate"/>
<author>
<name>Zhong, Xinlin</name>
</author>
<id>https://hdl.handle.net/1721.1/165581</id>
<updated>2026-04-22T03:06:04Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Physics-based and Machine Learning Hybrid Modeling of Oil Transport and Oil Consumption in Internal Combustion Engines - a Digital Twin
Zhong, Xinlin
A considerable amount of resources is invested by the automotive industry in combating internal combustion (IC) engine emissions resulting from lubrication oil consumption (LOC). Reducing LOC requires a thorough understanding of the oil transport in the piston ring pack, which is a multi-physics process with different length and time scales. Particularly, the multi-time scale nature has never been addressed in the field.&#13;
&#13;
This thesis develops a comprehensive digital twin framework to model oil transport in the piston ring pack across engine cycles and to predict LOC. A modular model architecture is employed, and a hybrid approach combining machine learning and physics-based models accurately and efficiently resolves each mechanism. The model incorporates essential physics responsible for the oil flow from the bottom of the ring pack to the top, including piston ring dynamics, gas flow, oil transfer between ring and liner, oil redistribution on piston land and grooves, oil vaporization, and ring rotation. The effects of expansive design and operating parameters are also considered. Three LOC sources, namely, oil vaporization on the liner, reverse gas flow, and the top ring up-scraping, are identified, and they are all found to be highly dependent on the ever-changing relative ring gap locations. As such, without knowing the ring gap locations, only a range of LOC can be predicted. &#13;
&#13;
To shed light on the enduring myth of ring rotation, a model is developed for the first time. An investigation into the driving mechanisms reveals piston secondary motion and bore expansion as the dominant factors in determining the rotation behavior. It was found that under a constant friction coefficient between the ring and the groove, stationary points inevitably arise for the top two rings, and a non-uniform distribution is needed to render any ring rotation patterns. By applying a gradient-based calibration procedure to the ring groove friction coefficient distribution, this work identifies the necessary ring groove lubrication condition to match experimentally observed ring rotation patterns.&#13;
&#13;
The Digital Twin framework is a valuable tool for studying how the lubricating oil is supplied, distributed, released, and consumed in the piston system, and the effects of design and operating parameters. The framework integrates processes at different length scales and traces the evolution of the oil distribution over engine cycles. For the first time, the unsteadiness of the oil transport in the ring pack under a steady engine operation is modeled with a reasonable computation time. The model is a foundation for future ring pack design optimization tasks where a balance between oil consumption and proper lubrication must be reached. Based on the current framework, future improvements on ring/groove lubrication conditions and the liner finish effects can expand the predictability of the model in both time and length scales.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Seeing Spirulina: Within, Between, and Beyond Institutional Research</title>
<link href="https://hdl.handle.net/1721.1/165580" rel="alternate"/>
<author>
<name>Ganapathy, Turga</name>
</author>
<id>https://hdl.handle.net/1721.1/165580</id>
<updated>2026-04-22T03:02:39Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Seeing Spirulina: Within, Between, and Beyond Institutional Research
Ganapathy, Turga
This three-part dissertation is born from diverse—sometimes overlapping, and even contradicting—rituals of contemporary Spirulina engineering and science-making. Drawing from my participation in institutional Spirulina research (Spirudemia) and do-it-yourself (DIY) algoculture, the text opens with stories foregrounding the skilled practices and material cultures of home growers, small-scale farmers, Spirulina academics (Spirudemics), commercial cultivators, philanthropists, and third worlding engineers whose ways of conceptualizing, cultivating, experimenting with, and relating to Spirulina have sculpted my own technoscientific vision. Next, I follow voyaging, botanizing agents of empire and Spirulina’s earliest industrialists to establish the emergence of Spirudemia. Diving into Spirudemia’s beginnings, I situate Spirudemics’ taken-for-granted traditions—and their attendant research trajectories and material outcomes—in a long arc of historical entanglements with colonial bioprospecting missions, land dispossession, and plantation-scale monoculture. Emerging from critique in the final chapter, I channel my labor into realities and futures in which Spirulina cultivation is collaborative, decentralized, and democratized. Combining microscopy and geometry-based computer vision, I showcase a partially-automated image processing protocol that tracks the helicities of Spirulina trichomes grown in low-cost, plug-and-play, lab-scale photobioreactors (PBRs). I demonstrate how time-series shape data collected daily across cultivation periods allows humans to interface with the filamentous cyanobacteria via a “language of shape.” Colony morphology histories reveal Spirulina’s preferred growth mechanisms, alterations in bacterial cell wall architecture, morphological acclimation timescales, and the emergence of multiple morphotypes within a single population. From a more-than-human engineering standpoint, shape data may inform maintenance interventions, and enable assessments of culture health and growth consistencies within typically black-boxed bioreactor ecosystems from the perspectives of their microbial inhabitants.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Low-cost and Low-emissions Strategies for&#13;
Implementation of Hydrogen as Next Generation Fuel</title>
<link href="https://hdl.handle.net/1721.1/165579" rel="alternate"/>
<author>
<name>Bhat, Maanasa</name>
</author>
<id>https://hdl.handle.net/1721.1/165579</id>
<updated>2026-04-22T03:02:56Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Low-cost and Low-emissions Strategies for&#13;
Implementation of Hydrogen as Next Generation Fuel
Bhat, Maanasa
Net Zero Emissions 2050 (NZE 2050) outlines an ambitious goal of complete reduction of net CO₂ emissions to zero in the next two decades. This is aimed to be achieved through maximum decarbonization of energy production, transportation, residential and industrial sectors. One of the active strategies for decarbonization is switching from fossil-based energy&#13;
sources to renewable energy sources which is expected to contribute approximately 40 % towards net zero. However, analysis of current technology readiness levels of renewable&#13;
energy utilization and prediction of future technology development suggest that switching to renewable sources might not be sufficient to reach net zero by 2050. In addition to renewable energy, carbon-free or carbon-neutral fuels are attractive options for replacing fossil-based fuels and accelerating emissions reduction. Hydrogen is the most prominent carbon-free fuel under consideration and hydrogen and its derivatives are expected to have a significant role in the overall CO₂ emissions reduction strategy. &#13;
Hydrogen is a high energy density fuel and is currently used in industries such as chemicals production, iron and steel and refineries. NZE 2050 roadmap predicts the expansion of&#13;
hydrogen usage to transportation, electricity production, heating by blending in gas grid and many other sectors. However, the current hydrogen infrastructure is not sufficient for&#13;
large scale hydrogen utilization and a wide range of improvements in technology development, technology scale-up, economic feasibility analysis and policy development are required. In this regard, this thesis contributes towards low-cost and low-emissions strategies for hydrogen&#13;
infrastructure development in three different stages of the hydrogen life cycle: production, storage and transportation.&#13;
In the hydrogen production stage, a low-cost spray synthesis process is investigated for the production of mixed metal oxide materials which are potential catalysts that improve&#13;
hydrogen production efficiency. Synthesis of mixed metal oxides is highly challenging due to separation of the constituent elements during the product material formation process. In this&#13;
section, the evaporation of the spray droplet is visualized to improve understanding of the element separation during the product particle formation. It is shown that addition of just 2&#13;
wt % urea to the precursor spray solution causes violent bubbling and mixing of elements in the droplet at 150 °C. This strategy can be used to mitigate the element separation and form uniform product particles as desired.&#13;
In the hydrogen storage stage, the development of highly sensitive hydrogen leak detection sensors to improve operational safety is discussed. Storage and transportation of hydrogen is dangerous due to low ignition energy and high flame speeds. Chemiresistive metal oxide sensors are suitable leak detection devices with a simple design, minimal energy requirement and capability of detecting sub-ppm level of hydrogen. The response of these sensors to low&#13;
concentrations of hydrogen leaks is known to be dependent on the structure of the sensing metal oxide film. However, the effect of sensing film structural features such as film porosity, constituent particle size and packing density on the sensor response is not yet well understood.&#13;
In this section, an attempt is made to elucidate this structure-response relationship in sensors by preparing varied sensing film structures following established methods and evaluating&#13;
sensor response for ppm level hydrogen exposure. The results show that including only structural features that accelerate surface reactions in the sensing mechanism may not be&#13;
sufficient to get a good sensor response and a more holistic approach considering all stages of the sensing mechanism is required to design high performing sensors.&#13;
For the hydrogen transportation stage, Techno-economic analysis (TEA) and Life cycle analysis (LCA) methods are used to estimate the costs and emissions of using hydrogen carriers&#13;
as means of long-distance hydrogen transportation. With increasing hydrogen demand in various sectors in accordance with NZE 2050, development of a global hydrogen supply chain&#13;
is essential to ensure uniform usage. Pipeline transportation of gaseous hydrogen becomes too complicated and expensive for distances above 1800 km. A strategy to overcome this challenge&#13;
is converting hydrogen to higher density liquid materials called hydrogen carriers which can be easily transported globally using tanker ships. This section discusses the estimation of eco-&#13;
nomic feasibility and emissions reduction potential for long-distance hydrogen transportation from Australia to Japan via four hydrogen carriers methanol, methane, ammonia and liquid&#13;
hydrogen using TEA and LCA methodologies. The analysis shows that when the end-use for the hydrogen carriers is fixed as 20% cofiring in natural gas power plants, ammonia is the&#13;
cheapest hydrogen carrier with a delivered cost of $40/GJ-LHV and adds $50/MWh to the produced electricity cost.&#13;
The thesis outlines implementable and economically and environmentally feasible strategies for improvements in efficiency of hydrogen production, safe operation through leak detection and long-distance transportation. The thesis contributes towards accelerating the development of hydrogen infrastructure to achieve the CO₂ emissions reduction goals set by NZE 2050.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Effect of Breaching on Coastal Pond Water Quality</title>
<link href="https://hdl.handle.net/1721.1/165578" rel="alternate"/>
<author>
<name>Brooks, Faith</name>
</author>
<id>https://hdl.handle.net/1721.1/165578</id>
<updated>2026-04-22T03:09:46Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">The Effect of Breaching on Coastal Pond Water Quality
Brooks, Faith
Coastal pond breaching is used as a management strategy to improve water quality and reduce the frequency of harmful algal blooms (HABs) in many New England coastal ponds. At Sesachacha Pond, on Nantucket Island, MA, breaching currently is conducted twice annually with the goal of flushing eutrophic pond water and maintaining a brackish ecosystem through ocean input. Recent breaches have been too short to allow for significant water exchange, raising questions about the effectiveness of breaching as a water quality management method because the total nitrogen (TN) concentration remains four times in exceedance of the total maximum daily load (TMDL). The high level of eutrophication in the pond has led to anoxic and hypoxic conditions, resulting in an increase in HABs that poses a danger to the ecosystem and those interacting with it. Observations collected during the December 2024 breach using nutrient sampling and spectral data suggest that even brief connections may lower TN concentrations, but greater and sustained improvements to pond water quality likely depend on extending breach duration to enable greater water exchange. &#13;
&#13;
Field observations identified the marsh culvert stream and Cains Pond as nutrient sources and potential sites of algal growth. Modest decreases in TN and reflectance at 703 nm indicate that more effective breaches may limit nutrient availability and help mitigate HAB formation. With procedural adjustments and the potential addition of a third breach with greater timing flexibility, it may be possible to reduce nitrogen levels further and restore healthier pond conditions. Although recent breaches have not achieved lasting improvements, this appears to reflect logistical limitations rather than a failure of the breaching process itself. The findings provide a framework for improving breach execution and informing future coastal pond water quality management strategies.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Model Based Digital Engineering: Accelerating Digital Transformation through Integrated Data and Model Management Framework</title>
<link href="https://hdl.handle.net/1721.1/165577" rel="alternate"/>
<author>
<name>Pradhan, Jayanta Kumar</name>
</author>
<id>https://hdl.handle.net/1721.1/165577</id>
<updated>2026-04-22T03:08:14Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Model Based Digital Engineering: Accelerating Digital Transformation through Integrated Data and Model Management Framework
Pradhan, Jayanta Kumar
The increasing complexity of engineered systems and the demand for rapid innovation are straining traditional, siloed engineering practices. Despite the adoption of digital tools, many organizations suffer from fragmented environments, leading to inefficiencies, communication failures, and recurring challenges with project cost, scheduling, and design validation. To address these issues, this thesis introduces a comprehensive framework for Model-Based Digital Engineering (MBDE) designed to unify disparate systems into a cohesive digital ecosystem. Central to this is a vendor-neutral architecture that treats data and models as core enterprise assets. Recognizing that many digital transformations stall due to a lack of data and model governance, the proposed framework establishes the essential architectural, procedural, and governance mechanisms for a scalable MBDE implementation, enabling seamless traceability and consistency. By bridging the gap between strategy and execution, this work offers an actionable methodology for transitioning to an integrated, model-based enterprise. The results underscore that structured data interoperability, cross-disciplinary collaboration, and lifecycle model continuity are critical for achieving measurable gains in engineering efficiency, program agility, and system performance.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Inverse Discrete Design</title>
<link href="https://hdl.handle.net/1721.1/165576" rel="alternate"/>
<author>
<name>Abdel-Rahman, Amira</name>
</author>
<id>https://hdl.handle.net/1721.1/165576</id>
<updated>2026-04-22T03:02:25Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Inverse Discrete Design
Abdel-Rahman, Amira
Historically, engineering and manufacturing have been dominated by analog processes—manual, continuous, and heavily reliant on human intuition and trial-and-error. Digital technologies have revolutionized communication and computing, enabling unprecedented scalability, precision, and complexity, yet our methods for designing and fabricating physical structures remain largely analog, fragmented across disciplines, and resistant to integration, significantly limiting innovation across complex, multidisciplinary domains. We need a parallel digital revolution in the physical realm that implements principles of discretization, modularity, hierarchy, and error correction to create new possibilities for physical design and fabrication. By applying these principles to physical structures, we can enable precise placement of functional materials with embedded electrical and mechanical properties. These `Digital Material' structures bring digital programmability to the physical realm, mirroring the transformative impact of digital technologies in other fields. &#13;
&#13;
&#13;
This transformation requires new design methodologies to faithfully model our complex environment and enable us to design a new world where the physical and digital become indistinguishable. My thesis introduces a fully declarative and inverse workflow for designing and building scalable Digital Material systems. These workflows allow users to model and design systems that span scales (micro, meso, macro) and disciplines (electrical, mechanical, aerospace, architectural engineering) without being experts in all—or any—of these fields. The introduced workflow uses domain knowledge as priors and universal design representations across all stages of design, simulation, optimization, fabrication, and control.  &#13;
&#13;
Leveraging the discrete and hierarchical nature of the Digital Material system, I first introduce a multi-scale multi-physics simulation tool for mechanical metamaterial. I then present target-based multi-scale optimization workflows for the design of the geometry as well as the growth of cellular structures and soft robots. Next, I introduce advanced path planning algorithms—swarm, recursive, and hierarchical—for scalable robotic swarm assembly; as well shape-control optimization for the reconfiguration of these robots. The work extends to introduce a comprehensive design tool to design and build intelligence and physical computing, and culminates in an end-to-end inverse design workflow of electromechanical structures, that transforms text specifications into physical designs. The workflow is used to design a plethora of static and dynamic structures, ranging from bridges and shelters to aerospace structures, robots, and electronics.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Deep Learning Framework for Acoustic Condition Monitoring in Machining Nickel Superalloy Turbine Blades</title>
<link href="https://hdl.handle.net/1721.1/165575" rel="alternate"/>
<author>
<name>Placzek, Luke Alexander</name>
</author>
<id>https://hdl.handle.net/1721.1/165575</id>
<updated>2026-04-22T03:10:29Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A Deep Learning Framework for Acoustic Condition Monitoring in Machining Nickel Superalloy Turbine Blades
Placzek, Luke Alexander
The machining of gas turbine blade cooling holes presents persistent manufacturing challenges due to the difficulty of working with single-crystal nickel superalloys, ceramic coatings, and intricate geometries. In the machining of the cooling holes on GE Vernova's 7HA.03 stage 1 turbine blades, over 60 carbide tools are typically consumed per blade, and machining interruptions due to tool breakage occur on average every 30 minutes, leading to over 5 hours of additional process time per blade. While modern CNC machines provide machine state logs through systems like Vimana, due to the size of tools, the RoboDrills in use are only able to detect tool breakage after hole completion, making it impossible to determine when or where within a hole the tool fails. This work was done in conjunction with fellow M.Eng. student Alexander Brush [1], who worked on the statistical modeling of current tool breakage and modification of process parameters to reduce tool breakage. This thesis builds a data pipeline for collecting audio at a 96kHz sample rate, visualize it, and combine it with the machine data and breakage statistics to segment the audio into appropriate files which can be used to train Machine Learning (ML) models to detect tool failures. To test this framework, multiple classification models were trained on 32 hours of segmented audio data synchronized with Vimana machine logs. The data pipeline automatically segments continuous audio recordings into labeled training examples based on machine state, with augmentation methods to mitigate the severe class imbalance. Additionally, a Statistical Process Control (SPC) system was implemented to track tool breakage rates in real-time, using Nelson rules to detect significant changes in process performance. This enables engineers to identify when process modifications impact tool life and correlate changes with specific machines, rows of holes, or operational parameters. The combination of acoustic monitoring for precise breakage detection and SPC for trend analysis provides engineers with actionable insights for process improvement. While the current model accuracy requires improvement before production deployment, this work establishes the infrastructure and methodology for enhanced tool condition monitoring in high-value manufacturing.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Key factors controlling the radiation tolerance of REBCO&#13;
tapes in a nuclear fusion environment</title>
<link href="https://hdl.handle.net/1721.1/165574" rel="alternate"/>
<author>
<name>Devitre, Alexis R.</name>
</author>
<id>https://hdl.handle.net/1721.1/165574</id>
<updated>2026-04-22T03:06:37Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Key factors controlling the radiation tolerance of REBCO&#13;
tapes in a nuclear fusion environment
Devitre, Alexis R.
Superconducting magnets based on Rare-Earth Barium Copper Oxide (REBCO) enable energy break-even in compact fusion power plants (FPPs). Given the critical role of the magnet system, the radiation tolerance of REBCO informs the thickness of the neutron shield, which has direct consequences on the ultimate FPP size and cost. The performance of fusion magnets is often gauged by the maximum current that these can carry without resistance, known as the critical current, I_c. However, predicting the radiation response of REBCO remains challenging because defect formation, evolution, and their net effect on I_c depend on the initial microstructure and operating conditions. An empirical approach is needed to identify the factors controlling I_c degradation in a fusion environment and to efficiently reassess the radiation tolerance of new REBCO tape formulations.&#13;
&#13;
To address this, we designed and commissioned a cryogenic ion-irradiation platform capable of exposing REBCO tape to controlled, homogeneous light and heavy ion beams to emulate the consequences of fusion neutron bombardment. The system controls temperature (20-300 K) and assesses the superconducting properties of REBCO tapes with transport current measurements (100 nA-100 A, δV ≈ 0.1 μV) before, during and after irradiation — capturing for the first time all aspects of fusion magnet operating conditions, with the recent addition of a 0.33~T permanent magnet embedded in the target holder.&#13;
&#13;
The results reveal that I_c degrades 1.6x faster at cryogenic temperatures than at 300 K—the latter is typical of in-core neutron irradiations previously used for lifetime dose assessments. Real-time measurements during irradiation also show a reversible suppression of I_c due to ion beam heating, enabling a direct determination of the beam spot temperature. Careful experimental design and statistical analysis were used to isolate and exclude the effect of ballistic displacements relevant to neutron irradiation. Preliminary results further suggest an acceleration of I_c degradation in the presence of a background magnetic field.&#13;
&#13;
The main conclusion of this thesis is that radiation tolerance of REBCO tapes may have been overestimated in prior assessments. Our results provide the first dataset capturing all major operational factors and will inform future "design rules" for optimizing the radiation shielding of superconducting magnets in fusion power plants.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Photonic Control of Incoherent Emission In and Out of Equilibrium</title>
<link href="https://hdl.handle.net/1721.1/165573" rel="alternate"/>
<author>
<name>Pajovic, Simo</name>
</author>
<id>https://hdl.handle.net/1721.1/165573</id>
<updated>2026-04-22T03:03:15Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Photonic Control of Incoherent Emission In and Out of Equilibrium
Pajovic, Simo
Spontaneous emission is the quantum mechanical process by which matter excited to a higher energy level transitions to a lower one by emitting light in the form of a photon. It is partly characterized by its incoherence (i.e., emitted photons have random frequencies and directions) and can occur in systems that are in or out of thermodynamic equilibrium. Thermal emission is the archetypal example of equilibrium spontaneous emission, while an example of nonequilibrium spontaneous emission is scintillation—light emission when an X-ray passes through a material, notable for its wide use in medical imaging and particle physics. In equilibrium systems, the design of incoherent emitters is enabled by Kirchhoff’s law of radiation, traditionally equating the emissive properties of materials to their absorptive properties, which are much easier to compute. Recently, Kirchhoff’s law was generalized to nonequilibrium systems, but additional complications such as broken time reversal symmetry (via magnetic fields and/or time modulation) require further generalizations that may not take the form of an equality between emission and absorption. Using thermal emission and scintillation as canonical and technologically relevant examples of incoherent emission, this thesis explores the control of both equilibrium and nonequilibrium light emission by applying strategies from nanophotonics within the framework of Kirchhoff’s law and its generalized forms. In the first part, I show how magnetic fields and nanophotonic patterning can be used to tailor thermal emission from nano- to macroscale, for applications in energy and medical imaging. First, I use modeling to show that combining magnetocaloric materials (which change temperature in response to magnetic fields) with magneto-optic materials can enable switchable radiative heat transfer. Then, I experimentally demonstrate nonreciprocal (or directionally asymmetric) reflectivity in a magneto-optic material, which is tantamount to the breakdown of the traditional form of Kirchhoff’s law, i.e., emissivity no longer equals absorptivity. Finally, I revisit X-ray tube design through the lens of photonics and show that nanophotonic patterning can enhance radiative cooling in these systems, leading to superior performance and reduced risk of failure in X-ray imaging. In the second part, I show how nanophotonics provides an avenue to control scintillation, emphasizing approaches that can increase the physical size and dimensionality (i.e., from surface to volumetric nanophotonic patterning) of so-called “nanophotonic scintillators.” I demonstrate the imaging of biological samples using scintillators that are nanophotonically patterned over areas as large as 4×4 cm—competitive with commercially available flat-panel detectors—and measure sixfold scintillation emission enhancement over a relatively large area. Then, I experimentally probe volumetric nanophotonic scintillators that are patterned extremely deep into the material, even all the way through (∼0.5 mm, two orders of magnitude greater than the wavelength of emitted light). In particular, I report a new phenomenon in which the patterns can outcouple light emitted farther away in the bulk without being directly excited themselves, which is promising for applications such as remote particle detection. In summary: using nanophotonic strategies grounded in newly derived generalizations of Kirchhoff’s law, my work demonstrates how incoherent emission can be tailored both in and out of equilibrium. This thesis contributes to the development of more efficient, engineered emitters and absorbers for applications including energy conversion, sensing, and medical imaging.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Toward Quantitative Evaluation of Public R&amp;D Investments:&#13;
A Framework Concerning Japan’s Semiconductor Strategy</title>
<link href="https://hdl.handle.net/1721.1/165572" rel="alternate"/>
<author>
<name>Nakata, Shogo</name>
</author>
<id>https://hdl.handle.net/1721.1/165572</id>
<updated>2026-04-22T03:09:14Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Toward Quantitative Evaluation of Public R&amp;D Investments:&#13;
A Framework Concerning Japan’s Semiconductor Strategy
Nakata, Shogo
Semiconductors serve as a cornerstone of national industrial infrastructure and are critically important strategic technologies and materials from the perspective of economic security. In recent years, particularly with regard to next-generation semiconductors, governments around the world have provided unprecedented levels of support, intensifying international competition. However, public investment decisions in the technology sector may rely heavily on internal heuristics within government institutions, and resource allocation is not always optimal. As the physical limits of the miniaturization approach, the importance of back-end processes is increasing, and evaluation metrics are becoming more diverse. In the absence of systematic use of indicators such as Figures of Merits(FOMs) and Technology Readiness Levels (TRLs), evaluation criteria vary across projects, leading to inconsistencies in resource allocation priorities and potentially reducing the overall efficiency of public support. This study adopts a systems thinking approach to compare semiconductor policies across countries and focuses on technology roadmapping as a method for enabling quantitative evaluation using FOMs and TRLs. Based on this methodology, the study proposes an evaluation framework for government Research and Development (R&amp;D) projects. Specifically, it analyzes the status of FOM implementation within Japan’s nextgeneration semiconductor policy and examines the feasibility of quantitative decisionmaking through a hypothetical case study focusing on high-bandwidth memory (HBM). The comparative analysis of Japan and the United States reveals that Japan’s top-down, concentrated investment strategy offers strengths in terms of speed and consistency, while the US model excels in long-term infrastructure development, broad stakeholder engagement, and flexible resource allocation. The study also finds that Japan lacks a comprehensive national strategy that clearly outlines investment priorities by technology area. As a result, resource allocation tends to be fragmented and dispersed. Furthermore, at the policy level, technology roadmaps based on FOMs and clear strategic guidance are insufficient. At the project level, many initiatives lack quantitative goals and evaluation metrics, and the use of FOMs remains limited and inconsistent. To address this issue, evaluation, and portfolio management methods that incorporate FOMs and TRLs may provide a basis for improving alignment with policy goals and enabling transparent and rational investment decisions. This study suggests that developing national-level technology roadmaps and establishing a consistent evaluation system based on FOMs represent promising strategies for enhancing the strategic coherence and operational efficiency of Japan’s semiconductor policy.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Return Paths: Tracing the Sound of Black, Asian, and Indigenous Technologies</title>
<link href="https://hdl.handle.net/1721.1/165571" rel="alternate"/>
<author>
<name>Briët, Kayla Luray</name>
</author>
<id>https://hdl.handle.net/1721.1/165571</id>
<updated>2026-04-22T03:10:13Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Return Paths: Tracing the Sound of Black, Asian, and Indigenous Technologies
Briët, Kayla Luray
In Return Paths: Tracing the Sound of Black, Asian, and Indigenous Technologies, I explore the intertwined histories of sound, craft, and computation across diasporic Black, Asian, and Indigenous communities. Moving across four technological eras— acoustic instruments, radio and spectrum, amplification and electrification, and digital machines—I reframe music technologies not as neutral tools to uphold a mythology of the cutting edge, but as carriers of land, labor, and memory. Through archival storytelling, personal narrative, and craft-based research, I amplify muted stories of invention, foregrounding how improvisation, relationality, and self-sovereignty function as survival technologies against colonial erasure. Chapter One situates improvisation and luthiery as acts of survivance, recalling instruments such as the African banjo and bomba barrel drum as vessels of ancestral memory and resistance. Chapter Two reframes the radio spectrum as kin, tracing Black and Indigenous broadcasting and mutual-aid radio as acts of self-determination, cultural continuity, and collective care. Chapter Three highlights Afro-Asian collaborations in Jamaican sound system culture, linking militarized knowledge and indigenous rhythms to sound and memory. Chapter Four weaves my conception of an Indigenous machine epistemology with global Black, Asian, and Indigenous contributions in computing, from the Haudenosaunee wampum belt and Quechua khipu to Diné women’s craftsmanship in semiconductor assembly. The chapter ends with how the integrated circuit reshaped the digital soundscape and with Don Lewis’ unsung invention of a serial digital protocol that predated MIDI by a decade. Together, these threads illuminate the politics of the archive: who is remembered as an inventor, and under what conditions? Here, my metaphor of the return path—an electrical current’s continuity to its source—serves as a method for ancestral recall. Rather than situating Black, Asian, and Indigenous histories as parallel, I argue that they are interwoven, forming a circuitous loop of innovation, collaboration, and repair. By tracing these return paths, I call for new epistemologies of technology that honor multiplicity beyond geographic and racial fixity, celebrate survival and ancestry, and create futures rooted in kinship, sovereignty, and self-determined invention. With these seeds, we may create for ourselves a beautiful, meaningful, dignified, and storied life. Above all, I write to those with broken and scattered archives, to those who exist in the in-between, mapping belonging across borders. We cannot study ourselves into existence. Instead, we can take the shattered pieces of the past, examine them, and arrange them to create a mosaic — something new and equally true. This path is not for the faint hearted, but this forge reveals the sanctuary within ourselves. This sanctuary is the path to becoming. Becoming is the path to freedom.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Electronic Phases in Crystalline Lanthanide Systems</title>
<link href="https://hdl.handle.net/1721.1/165570" rel="alternate"/>
<author>
<name>Debbas, Maximilien F.</name>
</author>
<id>https://hdl.handle.net/1721.1/165570</id>
<updated>2026-04-22T03:03:27Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Electronic Phases in Crystalline Lanthanide Systems
Debbas, Maximilien F.
Crystalline lanthanide systems are known to realize a multitude of disparate electronic phases arising from lattices of localized f-electrons in the crystal. These phases include magnetic phenomena such as ferromagnetism and antiferromagnetism as well as nonmagnetic Fermi liquid phases such as heavy fermion systems. Lanthanide systems can moreover realize exotic phases such as heavy fermion superconductivity, multipolar order, and hidden order. The latter two may be driven not solely by the magnetic dipole moment of the localized f-electrons, but additionally by higher-order multipolar moments such as the electric quadrupole which are often significant due to the highly anisotropic nature of the f-electron orbital wavefunction. The orbital wavefunction is also highly sensitive to the local crystal field surrounding it via interaction with the crystal electric field (CEF). This crystal field can lower the symmetry of the environment wherein the f-electron lives to strongly modify the behavior of the free-space electronic state by lifting energetic degeneracies and introducing strong anisotropy.&#13;
&#13;
This thesis will investigate the physics of three different lanthanide systems: R₃Ni₃₀B₁₀ (R = La, Ce), Ce₂SnS₅, and Gd₂B₅. These materials will provide opportunities to discuss multipolar/anomalous order in Ce₃Ni₃₀B₁₀, anisotropic magnetism in Ce2SnS5, and the mapping of a rich, highly anisotropic phase diagram in Gd₂B₅. Experimental characterization techniques employed in the study of these materials include electrical transport, SQUID magnetometry, torque magnetometry, and heat capacity. This thesis will also leverage group theory and its power to shed light on otherwise abstruse electronic phenomena. Due to the wide range of electronic phenomena accessible through the study of lanthanide systems, these materials provide an exciting platform for the realization of material engineering of potentially tunable quantum systems. This thesis will motivate these systems by emphasizing the richness of the myriad of electronic phenomena attainable through the manipulation of the local environment of the lanthanide f-electrons.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Connecting UV-Mediated Property Changes to Surface Cracking in Low-Density Polyethylene: Toward Understanding the Generation of Microplastic Pollution</title>
<link href="https://hdl.handle.net/1721.1/165569" rel="alternate"/>
<author>
<name>Lehn-Bradshaw, Andrea M.</name>
</author>
<id>https://hdl.handle.net/1721.1/165569</id>
<updated>2026-04-22T03:02:52Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Connecting UV-Mediated Property Changes to Surface Cracking in Low-Density Polyethylene: Toward Understanding the Generation of Microplastic Pollution
Lehn-Bradshaw, Andrea M.
The vast production and disposal of synthetic polymers have led to widespread microplastic (MP) pollution. MPs are nominally defined as polymer-based particles with at least one size dimension in the 1 μm to 1 mm range. MPs pose risks to ecosystems, human health, and they may impact climate processes. Understanding MP formation is important to mitigating these impacts. A primary source of MP generation is the fragmentation of larger plastics through environmental weathering, with UV radiation likely playing a significant role due to its effects on polymers. The overarching goal of this research is to bridge the gap between UV-mediated molecular-scale changes in polymers and surface cracking by applying principles from fracture mechanics. MPs extracted from the environment show signs of UV-induced changes, and observational studies in the lab confirm that UV exposure accelerates fragmentation, producing smaller, more abundant particles. Studies of polymer degradation in the lab and in the field also show that UV, combined with factors such as temperature and humidity, lead to property gradients and sometimes surface cracking. However, there is disagreement about the depth and severity of these gradients, and it is difficult to isolate the effect of UV on surface cracking. Residual stress arising from gradient formation may lead to cracking, but residual stress generated by UV exposure has not been studied. Thus, while UV-induced molecular changes are well-known, the mechanisms by which UV exposure causes surface cracking and fragmentation remains unclear, and predictive models are lacking. We address this gap by: 1) quantifying property gradients, residual stress, and surface cracking in a model polymer, additive-free low-density polyethylene (LDPE), exposed to UV radiation, and 2) applying a film-on-substrate fracture mechanics model to relate surface cracking to mechanical property gradients, residual stress (if present), geometry, and external loading in UV-exposed LDPE. &#13;
&#13;
In the first part of the thesis, we quantify UV-mediated property gradients and residual stresses in LDPE subjected to varying durations of UV exposure in a custom-built benchtop chamber. A depth-profiling method, based on a glancing angle cut, enabling high-resolution property analysis as a function of depth, is developed. Chemical, morphological, and mechanical property gradients are measured using x-ray photoelectron spectroscopy (XPS), Raman microscopy, and nanoindentation. Our results show that although a gradient in mechanical properties emerges, it is not sufficient to induce residual stress or surface cracking in the absence of external loading, under the examined conditions. Crystallinity increases with UV exposure, but no depth-varying trend emerges. At the chemical level, O2 content varies in a way that suggests UV in combination with other factors contributes to oxidation, since similar changes in oxidation emerge for irradiated samples and for control samples placed in the chamber that are shielded from UV.&#13;
&#13;
In the second part of the thesis, we evaluate the relevance of a film-on-substrate model to predict surface crack density in UV-irradiated LDPE. Film-on-substrate models offer valuable insights into how material heterogeneities, such as residual stress and elastic property gradients, influence fracture behavior. We select a finite fracture mechanics model that predicts surface crack density as a function of mechanical property gradients, geometry, and applied tensile or bending strain. UV-irradiated LDPE samples with known property gradients and geometry are subjected to varying levels of tensile strain using a universal tensile tester and then observed using scanning electron microscopy (SEM). Surface crack density is determined by visual inspection and compared to model predictions. A pattern of parallel surface cracks emerges in specimens exposed to UV, but not in controls. Crack density increases with increasing strain, with the direction of crack propagation orthogonal to the direction of tensile loading. Crack density and orientation are consistent with model predictions.&#13;
&#13;
To our knowledge, this is the first experimental study to explicitly connect UV-mediated molecular-scale changes to cracking behavior in a predictive manner by applying fracture mechanics principles. The mechanical property gradient formation observed is consistent with literature, showing surface softening followed by stiffening as a function of depth. We found that the formation of mechanical and chemical property gradients did not coincide with residual stress or surface cracking under the conditions of this study, suggesting that additional factors, such as external bending and tensile loads, in combination with UV exposure, are required for cracking to occur. Surface cracking patterns are consistent with patterns observed for LDPE exposed to UV and other factors. This study demonstrates that film-on-substrate fracture models are promising to improve our understanding of cracking behavior in UV-irradiated LDPE. In the future, this framework could be expanded to investigate cracking under a broader range of weathering conditions (e.g., temperature, humidity, or cyclic exposure), as well as in different polymers exhibiting similar responses to UV, such as high-density polyethylene (HDPE) or polypropylene (PP). Additionally, the influence of polymer additives on gradient formation and subsequent cracking behavior could be explored. This study used an additive-free polymer, and many commercial polymers, which end up as MP pollution, use various additives and stabilizers. This thesis serves as a stepping stone for clarifying the relationship between UV exposure and the generation of MP pollution via UV-mediated fragmentation.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of a Physics-Constrained Machine Learning&#13;
Model for Generalized Quasi-Linear Diffusion Coefficient&#13;
Prediction in Lower Hybrid Current Drive Scenarios</title>
<link href="https://hdl.handle.net/1721.1/165568" rel="alternate"/>
<author>
<name>Pyeon, Gyeonghun</name>
</author>
<id>https://hdl.handle.net/1721.1/165568</id>
<updated>2026-04-22T03:08:32Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Development of a Physics-Constrained Machine Learning&#13;
Model for Generalized Quasi-Linear Diffusion Coefficient&#13;
Prediction in Lower Hybrid Current Drive Scenarios
Pyeon, Gyeonghun
In this thesis, machine learning models for predicting the quasi-linear diffusion coefficient (D_QL) are explored, compared, and evaluated. A novel machine learning framework with physical constraints specifically designed to predict D_QL is proposed. The proposed D_QL prediction model successfully reproduces the ground truth D_QL obtained from GENRAYCQL3D simulations. Furthermore, when the predicted DQL replaces the conventionally computed D_QL in GENRAY-CQL3D, the resulting radial current drive profiles exhibit consistent behavior with those from the original simulation, while achieving a substantial reduction in computational time. These results demonstrate that the developed surrogate model not only accurately captures key wave–particle interaction features but also significantly accelerates simulation efficiency while maintaining accuracy. Accurate prediction of the quasi-linear diffusion coefficient is regarded as crucial for describing wave–particle interactions and non-inductive current drive in tokamak plasmas. However, conventional methods for evaluating D_QL rely on computationally intensive wave propagation and Fokker–Planck simulations. To address this challenge, a machine learning-based surrogate model capable of predicting D_QL both rapidly and accurately is developed. Initially, to predict D_QL, dimensionality reduction methods combined with neural networks are explored. Although these approaches enable improved computational efficiency, they struggle to fully preserve fine-scale details essential for accurate current profile prediction. To overcome these limitations, a hybrid architecture combining a U-Net and an autoregressive neural network (ARNN) is introduced. This hybrid architecture effectively captures the physics inherent in D_QL, while incorporating physical constraints via the Potential Power Deposition (PPD) method. Overall, the final U-Net–ARNN framework consistently outperforms other approaches, delivering precise wave–particle interaction modeling with greatly enhanced computational efficiency.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analysis of Runaway-Electron-Driven Whistler Waves on MST</title>
<link href="https://hdl.handle.net/1721.1/165567" rel="alternate"/>
<author>
<name>Xiao, Yiru</name>
</author>
<id>https://hdl.handle.net/1721.1/165567</id>
<updated>2026-04-22T03:08:05Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Analysis of Runaway-Electron-Driven Whistler Waves on MST
Xiao, Yiru
This thesis presents a detailed linear and quasilinear analysis of runaway-electron-driven whistler waves using experimental data from shot 1220511040 on the Madison Symmetric Torus (MST). A key novel aspect of this work is the investigation of the previously overlooked normal Doppler resonance (n=+1), which offers a new perspective on wave-particle interactions. The analysis concludes that while both anomalous and normal Doppler resonances can be excited by runaway electrons, they correspond to distinct wave propagation characteristics: the anomalous Doppler branch implies forward-propagating waves, whereas the normal Doppler branch implies backward-propagating waves. Theoretically, the normal Doppler branch is subject to damping and requires an additional source of free energy for net growth. This work proposes that the spatial gradient of the runaway electron density can provide this necessary free energy, enabling the instability and potentially explaining key experimental observations.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Complete and continuous methane pyrolysis to produce carbon&#13;
construction materials and hydrogen</title>
<link href="https://hdl.handle.net/1721.1/165566" rel="alternate"/>
<author>
<name>Bichnevicius, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/165566</id>
<updated>2026-04-22T03:06:14Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Complete and continuous methane pyrolysis to produce carbon&#13;
construction materials and hydrogen
Bichnevicius, Michael
Apart from being considered for prospective energy applications, hydrogen (H₂) today plays a pivotal role in growing food for the global population, serving as a key ingredient for ammonia-based fertilizers. However, unabated steam methane reforming (SMR)—the predominant method of H₂ production—produces CO₂, accounting for 2–3% of global CO₂ emissions. While clean alternative approaches such as water electrolysis have struggled to compete with the cost of SMR, various embodiments of methane pyrolysis (MP) hold promise. The key problems with MP, however, have been (1) realizing complete conversion or high yield; (2) navigating the engineering challenge of removing the solid carbon byproduct, enabling continuous operation without clogging; and (3) creating a valuable carbon product, providing the complementary value allowing the H₂ price to compete with SMR. Here, we report for the first time a prototype system that addresses each of these challenges, paving the way to make a useful carbon product and H₂.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Designing for Human Systems: Integrating Organizational Psychology into Systems-Theoretic Safety Analysis for Extreme Teams</title>
<link href="https://hdl.handle.net/1721.1/165565" rel="alternate"/>
<author>
<name>Carey, Tyler K.</name>
</author>
<id>https://hdl.handle.net/1721.1/165565</id>
<updated>2026-04-22T03:07:30Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Designing for Human Systems: Integrating Organizational Psychology into Systems-Theoretic Safety Analysis for Extreme Teams
Carey, Tyler K.
As the complexity of high-risk domains such as space exploration and energy production grows, safety analysis must account for cognitive, organizational, and team-based factors that shape human performance. System-Theoretic Process Analysis is a leading method for identifying unsafe control actions and loss scenarios in sociotechnical systems, yet its representation of complex human teams in extreme environments is limited. This thesis investigates whether STPA with the Engineering for Humans extension can capture important decision-making dynamics of a land-based drilling rig crew. The study draws on seven semi-structured interviews, 127 excerpts coded into 215 tags, and structured surveys over a 14-day work rotation with 32 of 42 responses. Three team-level themes emerged: performance demands, shared mental models, and hierarchical challenges. Applying STPA to bottom hole assembly handling produced four representative unsafe control actions and two detailed loss scenarios that link operator cognition and context to hazardous states. To address identified gaps, the thesis proposes an enhanced control structure that explicitly represents distributed cognition and cross-level information flows. This visualization layer revealed additional loss mechanisms related to delayed feedback, cognitive load, and cross-boundary misalignment, and supported three actionable mitigations in the case context. The findings show that STPA offers value beyond traditional methods, while indicating opportunities to adapt it to meaningfully represent distributed cognition and social dynamics in extreme teams, without altering core STPA steps. This work also contributes actionable insights for the case context examined here, as well as other high-risk extreme domains facing similar challenges.&#13;
Disclosure: The author takes full responsibility for the content provided in this thesis. While the ideas and writing are the author’s own, an AI-based tool was utilized to develop&#13;
and refine the material.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mechanisms of Solar-Thermal and Super Solar-Thermal Evaporation of Water</title>
<link href="https://hdl.handle.net/1721.1/165564" rel="alternate"/>
<author>
<name>Zhang, James H.</name>
</author>
<id>https://hdl.handle.net/1721.1/165564</id>
<updated>2026-04-22T03:01:24Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Mechanisms of Solar-Thermal and Super Solar-Thermal Evaporation of Water
Zhang, James H.
The phase change from liquid water to vapor is fundamentally important for many technologies, including electronic cooling, refrigeration, critical mineral harvesting, and desalination. Solar desalination uses solar energy to evaporate water from brine resources to produce clean water through a distillation process. This technology is particularly attractive for decentralized communities with abundant sunlight due to its low capital costs compared to other desalination technologies. Advances in interfacial solar evaporators using porous materials have enhanced the efficiencies of solar stills by concentrating the solar energy near the evaporating interface.&#13;
&#13;
A critical challenge in the large-scale application of solar desalination technologies is the high latent heat of evaporation of water. The maximum amount of water that can be produced is about 1.45 to 1.49 kg m-2 h-1 using the latent heat, sensible heat, and standard 1 sun intensity incident on the evaporating interface. This value is commonly referred to as the solar-thermal limit of evaporation. The latent heat of evaporation is about 3 orders of magnitude higher than the minimum energy needed to separate water from seawater using a membrane process. These low water production rates make it challenging to compete with other desalination technologies on a large-scale. Surprisingly, numerous works over the last decade have shown that highly microporous materials can exceed the solar-thermal limit of evaporation by 2 to 3 times, which we call super solar-thermal evaporation. These materials seem to violate energy conservation, and there needs to be a physical mechanism to explain these observations. Despite the plethora of experimental works, the field currently lacks critical analysis and understanding of the fundamental mechanisms for why super solar-thermal evaporation occurs. The lack of understanding has stalled the translation of this technology into readily deployable devices that can enhance the water production rates of solar stills immensely.&#13;
&#13;
In this thesis, we conducted a critical analysis using coupled transport phenomena to elucidate the mechanisms behind super solar-thermal evaporation. We first reexamined and disproved the prevalent reduced latent heat hypothesis that is commonly used to explain super solar-thermal evaporation rates through a combination of modeling, simulations, and experimental methods. This work also illustrated that water cluster evaporation is likely the only physical mechanism that can satisfy both the vapor transport and energy transport arguments in super solar-thermal evaporation rates. Next, we elucidate the underlying mechanisms for super solar-thermal evaporation rates from 3D interfacial solar evaporators. We show that the enhanced evaporation rates from these materials are driven by continuous dry air flowing near its sidewalls, leading to greater opportunities in outdoor open environments such as brine pond treatment than in closed environments such as solar still devices. Afterwards using our knowledge of coupled heat and mass transport, we designed and built a high-performing reverse solar still prototype for outdoor usage that is an order of magnitude larger in area than almost all other prototypes in the field with a similar configuration. Our understanding of the underlying coupled transport of these devices has given new insights on the optimization pathways of solar stills. Finally, we did further theoretical work on the photomolecular effect. The photomolecular effect is a new theory proposed by our group on how surface interactions between light and the air-water interface can excite water clusters out, leading to super solar-thermal 2D evaporation. We used simulations to understand how cluster dissociation kinetics can couple into the boundary layers above the evaporating surface. These works represent major steps in understanding both solar-thermal and super solar-thermal evaporation mechanisms.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Study of turbulent electron temperature fluctuations and their cross-phase angles with electron density fluctuations at the ASDEX Upgrade tokamak</title>
<link href="https://hdl.handle.net/1721.1/165563" rel="alternate"/>
<author>
<name>Yoo, Christian</name>
</author>
<id>https://hdl.handle.net/1721.1/165563</id>
<updated>2026-04-22T03:03:54Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Study of turbulent electron temperature fluctuations and their cross-phase angles with electron density fluctuations at the ASDEX Upgrade tokamak
Yoo, Christian
Turbulence is generally the dominant mechanism for energy transport in tokamak fusion reactors and has thus far prevented tokamaks from producing net energy. The measurement of plasma turbulence is important for improving our understanding of turbulent transport, for the validation of physics-based transport models, and ultimately for guiding the design of future fusion reactors. This Thesis presents an investigation of turbulent electron temperature fluctuations, their cross-phase angles with electron density fluctuations, and the impact of turbulent transport on plasma confinement at the ASDEX Upgrade (AUG) tokamak. This work spans three different confinement regimes - the low (L), improved (I), and high (H) confinement modes - as well as the physics of both core and edge turbulence.&#13;
&#13;
As part of this Thesis, a new Correlation Reflectometer Radiometer (CRR) diagnostic was designed and installed on AUG. Novel measurements in the edge of an H-mode plasma across a transition from small Edge Localized Modes (ELMs) to ELM-free operation show that the cross-phase angle between turbulent electron density and temperature fluctuations changes from approximately 90 degrees to 120 degrees, indicating changes in the physics driving transport. Of note is that this relatively large change in the cross-phase angle occurred despite only small changes in the edge profiles and gradients, indicating that the CRR diagnostic and the measured turbulence are particularly sensitive to small variations in plasma conditions that yield changes in ELM stability. &#13;
&#13;
Experiments and turbulence measurements using the Correlation Electron Cyclotron Emission (CECE) diagnostic were also conducted across the Linear Ohmic Confinement to Saturated Ohmic Confinement (LOC-SOC) transition in an ohmically-heated L-mode plasma at AUG. A multi-regime confinement database was then built to include I-mode and H-mode plasmas. A comparative analysis of these plasmas was performed. The results demonstrate for the first time that these three distinct confinement regimes, distinguished primarily by their different edge characteristics, nevertheless exhibit similar trends in energy confinement and density peaking as the core plasma effective collisionality increases in conditions with strong electron heating. One possible explanation for this result is that similar changes in core turbulence drive are occurring in all three confinement regimes. This study also found that two additional effects, including the strength of the neutral beam injection (NBI) particle source relative to transport effects as well as fast ion activity, are correlated with the observed trends. Therefore, multiple mechanisms could be playing a role in the underlying physics.&#13;
&#13;
Novel methods were also developed to improve the spatial and temporal resolution of turbulence diagnostics. In addition, real-time applications of turbulence diagnostics relevant to tokamak operation were explored. Overall, the results of this thesis research contribute to our understanding of turbulence and transport across multiple confinement regimes and detail new methods for measuring turbulent fluctuation amplitudes and cross-phase angles.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Broadband Acoustic Characterization of the Deep Scattering Layer</title>
<link href="https://hdl.handle.net/1721.1/165562" rel="alternate"/>
<author>
<name>Zhuang, Zhaozhong</name>
</author>
<id>https://hdl.handle.net/1721.1/165562</id>
<updated>2026-04-22T03:05:46Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Broadband Acoustic Characterization of the Deep Scattering Layer
Zhuang, Zhaozhong
Sound-scattering layers are found throughout the global ocean at depths between 200 and 1000 meters, referred to as the deep scattering layers (DSLs). DSLs are biological in nature, primarily formed by organisms such as zooplankton and mesopelagic fish, many of which undertake diel vertical migration (DVM). Despite their recognized ecological and biogeochemical significance, quantitative understanding of DSLs remains limited due to their vast spatial extent, deep habitat, complex biological composition, and dynamic coupling with ocean physics. This thesis leverages long-term broadband acoustic observations and signal processing methods to characterize the DSL from the individual to the population level, with the goal of improving biomass estimates and elucidating DSL dynamics in relation to oceanographic processes.&#13;
&#13;
Over two years, a deep-submerged mooring equipped with a broadband split-beam echosounder (36–44 kHz) was deployed in the slope sea off the New England continental shelf. The system continuously monitored individual organisms in the DSL between ~545 and 575 m depth. Tracking ~820,000 individual organisms, this study reveals a remarkably consistent target strength (TS) distribution across years, dominated by two distinct groups, with mean TS values of –53 dB and –49 dB, associated with migratory and non-migratory species, respectively. Variations in TS distribution at depth were linked to DVM, resident depth, and water masses, highlighting the importance of in situ TS observations for biomass estimation.&#13;
&#13;
A focused case study characterized the DSL within a warm-core anticyclonic eddy occupied by tagged sharks. The DSL inside the eddy exhibited high organism abundance and a unique vertical composition, with an upper layer dominated by fluid-like organisms. Energetic, near-inertial, oscillatory population movements with pronounced vertical shear were observed, likely driven by the "inertial drainpipe" effect of anticyclonic eddies that channel wind-generated near-inertial waves to depth. The superposition of wave and eddy velocity fields may result in a bowl-shaped DSL with persistent finescale vertical structures, i.e., thin layers. The distinct biological and physical environment within the eddy likely contributes to its role as a hotspot for marine top predators. &#13;
&#13;
To enhance and advance the capability of broadband split-beam echosounders in complex environments like the DSL, the thesis further revises and introduces methods for angle estimation of both single and overlapping echoes. A revised split-aperture correlator improves the angle estimation of single echoes from targets with highly frequency-dependent backscattering responses, while a broadband maximum likelihood estimator enables angle and spectral estimation of overlapping echoes from multiple targets, validated through laboratory experiments.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Monitoring Preferential Flow of Water in Sand Using Thermoacoustics Wave Imaging</title>
<link href="https://hdl.handle.net/1721.1/165561" rel="alternate"/>
<author>
<name>Liu, Chang</name>
</author>
<author>
<name>Mao, Xu</name>
</author>
<author>
<name>Wang, Chang</name>
</author>
<author>
<name>Liyanage, Rebecca</name>
</author>
<author>
<name>Heredia Juesas, Juan</name>
</author>
<author>
<name>Juanes, Ruben</name>
</author>
<author>
<name>Martinez‐Lorenzo, Jose Angle</name>
</author>
<id>https://hdl.handle.net/1721.1/165561</id>
<updated>2026-04-22T03:12:05Z</updated>
<published>2023-10-31T00:00:00Z</published>
<summary type="text">Monitoring Preferential Flow of Water in Sand Using Thermoacoustics Wave Imaging
Liu, Chang; Mao, Xu; Wang, Chang; Liyanage, Rebecca; Heredia Juesas, Juan; Juanes, Ruben; Martinez‐Lorenzo, Jose Angle
Accurate predictions of fluid flow, mass transport, and reaction rates critically impact the efficiency and reliability of subsurface exploration and sustainable use of subsurface resources. Quantitative dynamical sensing and imaging can play a pivotal role in the ability to make such predictions. Geophysical thermoacoustic technology has the potential to provide the aforementioned capabilities, since it builds upon the principle that electromagnetic and mechanical wave fields can be coupled through a thermodynamic process. In this letter, we present laboratory experiments featuring the efficacy of thermoacoustic imaging in the monitoring of preferential flow of water in porous media. Our laboratory experimental equipment can be readily packaged in a form factor that fits in a borehole, and the use of multiple acoustic transducers—which can be combined with volumetric coding techniques—has the potential to provide quasi‐real‐time imaging (0.5 Hz video rate) of regions in close proximity (a few meters) of an open field well.
</summary>
<dc:date>2023-10-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>An Analytic Model for Tropical Cyclone Outer Winds</title>
<link href="https://hdl.handle.net/1721.1/165560" rel="alternate"/>
<author>
<name>Cronin, Timothy W</name>
</author>
<id>https://hdl.handle.net/1721.1/165560</id>
<updated>2026-04-22T03:11:24Z</updated>
<published>2023-05-26T00:00:00Z</published>
<summary type="text">An Analytic Model for Tropical Cyclone Outer Winds
Cronin, Timothy W
The variation of Tropical cyclone azimuthal wind speed (V) with distance from storm center (r) is a fundamental aspect of storm structure with important implications for risk and damages. The theoretical model of Emanuel (2004, https://doi.org/10.1017/CBO9780511735035.010), which applies outside the rainy core of the storm, matches radiatively-driven subsidence and Ekman suction rates just above the boundary layer to obtain a nonlinear differential equation for dV/dr. This model is appealing because of its strong physical foundation, but lacks a known analytic solution for V(r). In this paper, I obtain an analytic solution to V(r) for the Emanuel (2004, https://doi.org/10.1017/CBO9780511735035.010) outer wind model. Following previous work, I then use this solution to explore properties of merged wind models that combine the outer model with an inner model, which applies to the rainy core of a storm.
</summary>
<dc:date>2023-05-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Comment on “Phosphine in the Venusian Atmosphere: A Strict Upper Limit From SOFIA GREAT Observations” by Cordiner et al.</title>
<link href="https://hdl.handle.net/1721.1/165559" rel="alternate"/>
<author>
<name>Greaves, Jane S</name>
</author>
<author>
<name>Petkowski, Janusz J</name>
</author>
<author>
<name>Richards, Anita MS</name>
</author>
<author>
<name>Sousa‐Silva, Clara</name>
</author>
<author>
<name>Seager, Sara</name>
</author>
<author>
<name>Clements, David L</name>
</author>
<id>https://hdl.handle.net/1721.1/165559</id>
<updated>2026-04-22T03:11:49Z</updated>
<published>2023-12-06T00:00:00Z</published>
<summary type="text">Comment on “Phosphine in the Venusian Atmosphere: A Strict Upper Limit From SOFIA GREAT Observations” by Cordiner et al.
Greaves, Jane S; Petkowski, Janusz J; Richards, Anita MS; Sousa‐Silva, Clara; Seager, Sara; Clements, David L
Searches for phosphine in Venus' atmosphere have sparked a debate. Cordiner et al. (2022, https://doi.org/10.1029/2022gl101055) analyze spectra from the Stratospheric Observatory For Infrared Astronomy (SOFIA) and infer &lt;0.8 ppb of PH3. We noticed that some spectral artifacts arose from non-essential calibration-load signals. By-passing these signals allows simpler post-processing and a 5.7σ candidate detection, suggesting ∼3 ppb of PH3 above the clouds. Compiling six phosphine results hints at an inverted abundance trend: decreasing above the clouds but rising again in the mesosphere from some unexplained source. However, no such extra source is needed if phosphine is undergoing destruction by sunlight (photolysis), to a similar degree as on Earth. Low phosphine values/limits are found where the viewed part of the super-rotating Venusian atmosphere had passed through sunlight, while high values are from views moving into sunlight. We suggest Venusian phosphine is indeed present, and so merits further work on models of its origins.
Article relates to: Cordiner, M. A., Villanueva, G. L., Wiesemeyer, H., Milam, S. N., dePater, I., Moullet, A., et al. (2022). Phosphine in the Venusian atmosphere: A strict upper limit from SOFIA GREAT observations. Geophysical Research Letters, 49, e2022GL101055. https://doi.org/10.1029/2022GL101055
</summary>
<dc:date>2023-12-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Re‐Assessing the Need for Apatite‐ and Dolomite‐Specific Calibrations of the Carbonate Clumped Isotope Thermometer</title>
<link href="https://hdl.handle.net/1721.1/165558" rel="alternate"/>
<author>
<name>Anderson, NT</name>
</author>
<author>
<name>Bonifacie, M</name>
</author>
<author>
<name>Jost, AB</name>
</author>
<author>
<name>Siebert, J</name>
</author>
<author>
<name>Bontognali, T</name>
</author>
<author>
<name>Horita, J</name>
</author>
<author>
<name>Müller, IA</name>
</author>
<author>
<name>Bernasconi, SM</name>
</author>
<author>
<name>Bergmann, KD</name>
</author>
<id>https://hdl.handle.net/1721.1/165558</id>
<updated>2026-04-22T03:13:16Z</updated>
<published>2024-01-22T00:00:00Z</published>
<summary type="text">Re‐Assessing the Need for Apatite‐ and Dolomite‐Specific Calibrations of the Carbonate Clumped Isotope Thermometer
Anderson, NT; Bonifacie, M; Jost, AB; Siebert, J; Bontognali, T; Horita, J; Müller, IA; Bernasconi, SM; Bergmann, KD
A few key methodological uncertainties remain for the carbonate clumped isotope community. One is how to compare data among published data sets that are not anchored to the InterCarb Carbon Dioxide Equilibrium Scale (I‐CDES). A second is how temperature calibrations of calcite compare to those of other carbonate minerals in the I‐CDES—particularly dolomite and apatite—which can elucidate several Earth system dynamics. Previous calibrations of the clumped isotope thermometer for dolomite are discrepant from one another and variably (dis)agree with calibrations developed for calcite; apatite calibrations have not yet been compared between laboratories using carbonate‐based standardization. Here we report I‐CDES standardized values for a suite of 11 carbonates that are commonly measured by the clumped isotope community to aid future comparisons of non‐I‐CDES data sets. In addition, 17 dolomite samples (25–1,200°C) and five apatite samples (1–38°C) of known precipitation temperature were measured using carbonate‐based standardization. Excellent agreement between calcites and dolomites heated to similar temperatures (1,100–1,200°C) suggests no mineral‐specific differences in absolute acid fractionation factor. We show that calcite and dolomite regressions largely agree but are sensitive to sample characteristics, regression method, and how equations are statistically compared. We suggest that there is no need for a dolomite‐specific clumped isotope calibration, although our results suggest that further work is necessary to determine the influence of sample characteristics on this relationship. The apatite calibration equation defined in this study is statistically indistinguishable from calcite‐based calibrations; we corroborate previous findings that an apatite‐specific calibration is unnecessary.
</summary>
<dc:date>2024-01-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Melt Network Reorientation and Crystallographic Preferred Orientation Development in Sheared Partially Molten Rocks</title>
<link href="https://hdl.handle.net/1721.1/165557" rel="alternate"/>
<author>
<name>Seltzer, Cassandra</name>
</author>
<author>
<name>Peč, Matěj</name>
</author>
<author>
<name>Zimmerman, Mark E</name>
</author>
<author>
<name>Kohlstedt, David L</name>
</author>
<id>https://hdl.handle.net/1721.1/165557</id>
<updated>2026-04-22T03:12:40Z</updated>
<published>2023-09-20T00:00:00Z</published>
<summary type="text">Melt Network Reorientation and Crystallographic Preferred Orientation Development in Sheared Partially Molten Rocks
Seltzer, Cassandra; Peč, Matěj; Zimmerman, Mark E; Kohlstedt, David L
We investigated the co-evolution of melt, shape, and crystallographic preferred orientations (MPOs, SPOs, and CPOs) in experimentally deformed partially molten rocks, from which we calculated the influence of MPO and CPO on seismic anisotropy. Olivine-basalt aggregates containing 2 to 4 wt% melt were deformed in general shear at a temperature of 1,250°C under a confining pressure of 300 MPa at shear stresses of τ ≤ 175 MPa to shear strains of γ ≤ 2.3. Grain-scale melt pockets developed a MPO parallel to the loading direction by γ &lt; 0.4. At higher strains, the grain-scale MPO remained parallel to the loading direction, while incipient sample-scale melt bands formed at ∼20° to the grain-scale MPO. An initial SPO and CPO were induced during sample preparation, with [100] and [001] axes girdled perpendicular to the long axis of the starting material. At the highest explored strain, a strong SPO was established subperpendicular to the loading direction, and the [100] axes of the CPO clustered nearly parallel to the shear plane. Our results demonstrate that grain-scale and sample-scale alignments of melt pockets are distinct. Furthermore, the melt and the solid microstructures evolve on different timescales: in planetary bodies, changes in the stress field will drive a relatively fast reorientation of the melt network and a relatively slow realignment of the crystallographic axes. Rapid changes to seismic anisotropy in a deforming partially molten aggregate are thus caused by MPO rather than CPO.
</summary>
<dc:date>2023-09-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Data-Driven Design of Recycling-Friendly Aluminium Alloys</title>
<link href="https://hdl.handle.net/1721.1/165556" rel="alternate"/>
<author>
<name>Montanelli, Luca Francesco</name>
</author>
<id>https://hdl.handle.net/1721.1/165556</id>
<updated>2026-04-22T03:06:32Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Data-Driven Design of Recycling-Friendly Aluminium Alloys
Montanelli, Luca Francesco
Improving material efficiency through the increased use of secondary material is an unambiguous goal for the aluminium industry. The main barrier in achieving this is the compositional mismatch between scrap and alloy. Among the many approaches to address this, one promising direction is to design alloys that compositionally match scrap streams, a practice called recycling-friendly alloy design (RFAD). However, previous efforts have largely focused on creating good scrap sinks without considering the system-wide nature of scrap consumption. In a supply chain governed by interdependent material flows, alloys must function not only as sinks but also as future sources of scrap.&#13;
&#13;
In order to increase overall scrap consumption, we propose an RFAD framework combining dynamic material flow analysis, economic feedback, and plant level batch-design to include a systemic assessment of end-of-life material generation and consumption. Each of these components is integrated in a Bayesian optimisation framework with comprehensive exploration of the alloy design space to balance the pervasive source-sink tension of elemental limits. Finally, we include a natural language processing module to assist in identifying thermodynamic and property constraints used to filter the design space.&#13;
&#13;
Using our framework, we find that the optimal alloys for the North American transport sector achieve a 7% increase in scrap usage, corresponding to 200-400 kt/year of additional scrap consumption. We also demonstrate that alloys designed for short lifetime sectors (e.g., transport) tend to be good sources whereas those designed for longer lifetime sectors (e.g., building &amp; construction) are good sinks due to their limited capacity to influence the composition and therefore the consumption of the post-consumer scrap stream. The capabilities of our model also allow us to simulate RFAD under different future scenarios. In the automotive sector, adoption of electric vehicles is driving a decrease in cast alloy production, a traditional sink. Thankfully, we show that the lower the production of cast alloys by 2040, the higher the scrap usage attainable with RFAD along with better properties. In the can sector, unialloys have been theorised to increase recycling by lowering compositional variability. Our simulations show that RFAD for a can unialloy leads to an additional 3.2% scrap usage increase versus RFAD for a non unialloy. Finally, exploring the Pareto frontier between yield strength and scrap usage, we find that 2xxx alloys offer the best trade-off, suggesting the potential for high-strength alloys sourced from automotive scrap.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Theory, Modeling, and Design Principles of Redox-mediated Electrochemical Systems</title>
<link href="https://hdl.handle.net/1721.1/165555" rel="alternate"/>
<author>
<name>Matteucci Jr., Nicholas J.</name>
</author>
<id>https://hdl.handle.net/1721.1/165555</id>
<updated>2026-04-22T03:03:35Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Theory, Modeling, and Design Principles of Redox-mediated Electrochemical Systems
Matteucci Jr., Nicholas J.
Electrochemical systems offer a pathway toward directly harnessing sustainable electricity to manage intermittency in renewable power production, decarbonize transportation, and unlock new routes for chemical and material production. However, to compete with their thermochemical counterparts, emerging electrochemical processes of interest must achieve lower system costs, higher efficiencies, and longer operating lifetimes. Redox-mediated electrochemical systems are an emerging technology concept that could aid in addressing these challenges. These devices utilize a chemical looping approach, where a soluble mediator species is circulated between an electrochemical reactor – where it is activated – and a chemical reactor – where the activated mediator drives an “off-electrode” chemical redox reaction. This decoupling of the desired chemical transformation of interest from the electrochemical reactor simultaneously alters the underlying design landscape, offering new routes toward cost-effective reactor architectures and conversions. Mediated processes have been demonstrated to improve the energy density of redox flow batteries, catalyze impractical or inefficient electrochemical transformations, increase selectivity and efficiency of separations and recycling, and facilitate spatial and temporal flexibility in chemical manufacturing. However, the complex interplay of the reactors and multiple active species obfuscate the underlying behavior of these systems, hindering efforts to understand, improve, and scale. In this dissertation, I develop a continuum model framework capable of capturing and rationalizing the thermodynamics, reaction kinetics, and transport phenomena that govern the performance dynamics of redox-mediated systems for energy storage and conversion. Leveraging (electro)chemical engineering principles and drawing upon mixed potential theory (originally developed to describe metallic corrosion), the framework qualitatively tracks the results of multiple experimental redox-mediated systems. Such findings suggest the framework is capable of providing insight into new avenues to probe questions related to system design and operation. I begin by relating physical and operating parameters to system-level performance trends in redoxmediated flow batteries, including revealing performance regimes and a dimensionless “collapsed relationship” for solid utilization and tradeoffs in system energy and power. Guided by the assumptions and consequences of the underlying theory, I then pursue a suite of modeling and empirical analyses to uncover the implications of different system designs and operational protocol. Specifically, I investigate how “delocalized” charge transfer in conductive composites, cycling protocol, active material degradation, non-ideal thermodynamics, and intraparticle transport are anticipated to alter the underlying dynamics and system performance of redoxmediated flow batteries. Toward the end of this work, I shift to analyzing emerging redox-mediated systems relevant to industrial chemical transformation, exploring case studies in continuously mediated solid transformations and mediated gas evolving reactions. Finally, I depart from the theme of this dissertation to briefly explore how dynamic thixotropy structure parameter expressions can dynamically regularize viscoplasticity in rheological models, which could aid in advancing non-Newtonian fluid mechanics simulations of emerging devices employing flowable suspension electrodes. Ultimately, the goal of this dissertation is to aid in the development of theory, analysis tools, and design principles that guide the study, development, and enhancement of emerging redox-mediated systems for sustainable energy conversion and storage.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Understanding Model Representation of Aerosol Composition: From Secondary Inorganic Aerosols to Phosphorus</title>
<link href="https://hdl.handle.net/1721.1/165554" rel="alternate"/>
<author>
<name>Norman, Olivia</name>
</author>
<id>https://hdl.handle.net/1721.1/165554</id>
<updated>2026-04-22T03:04:46Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Understanding Model Representation of Aerosol Composition: From Secondary Inorganic Aerosols to Phosphorus
Norman, Olivia
Aerosols in our atmosphere impact climate, human health, air quality, and biogeochemical cycling. Models can be a valuable tool for predicting aerosol abundance depending on how well they describe the processes controlling aerosols (e.g., emissions, thermodynamic partitioning, chemical production and loss, deposition). This thesis aims to improve our understanding of two aerosol components, secondary inorganic aerosols and phosphorus, through model development, evaluation, and exploration. In the second chapter of this thesis, we focus on secondary inorganic aerosols, which dominate fine particulate matter (PM2.5) in many regions of the world. We evaluate how well the trends and magnitude of secondary inorganic aerosols (sulfate, nitrate, and ammonium) are captured in a global chemical transport model using a suite of aircraft campaigns and identify high biases in ammonium nitrate. We also explore how remaining uncertainties in certain processes (emissions, deposition) may contribute to these biases and how others (thermodynamic partitioning, several chemical processes) are less likely to be the cause of current model bias. In the third and fourth chapters, we focus on phosphorus, which is an essential nutrient that can control ecosystem productivity. In the third chapter, we develop a comprehensive description of atmospheric phosphorus in a global atmospheric chemistry model. Leveraging a wide range of observational data, we evaluate our current understanding of the processes that control phosphorus (emissions, chemical aging) and highlight two improvements to our phosphorus description that result in less phosphorus from two sources (dust and combustion). In the fourth chapter of this thesis, we apply the atmospheric phosphorus scheme we developed to investigate how atmospheric phosphorus will evolve under projected anthropogenic land use changes. Looking at two scenarios for the future (SSP1 and SSP3) that have the most significant (and opposing) changes in land use compared to the present day, we find that global phosphorus deposition increases or decreases minimally (&lt;±3%), but with substantial regional changes (&gt;±50%). In aggregate, this thesis advances our understanding of aerosol composition by identifying key gaps in how aerosol composition (e.g., secondary inorganic aerosols and phosphorus) is represented and provides insight into how atmospheric composition responds to changing loss and production processes.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantifying ocean carbon and oxygen cycles using&#13;
Biogeochemical Argo</title>
<link href="https://hdl.handle.net/1721.1/165553" rel="alternate"/>
<author>
<name>Park, Ellen Ryunhwa</name>
</author>
<id>https://hdl.handle.net/1721.1/165553</id>
<updated>2026-04-22T03:01:15Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Quantifying ocean carbon and oxygen cycles using&#13;
Biogeochemical Argo
Park, Ellen Ryunhwa
The ocean plays an important role in the global carbon and oxygen cycles. Not only has it taken up one third of total anthropogenic carbon dioxide emissions, but it also produces 50% of the oxygen in the atmosphere due to phytoplankton that live in the surface ocean. This thesis explores different aspects of the ocean carbon and oxygen cycles using Biogeochemical (BGC) Argo, which is a global array of autonomous drifting profiling floats. Chapter 2 of this thesis addresses the question of: “How can we improve BGC-Argo float oxygen measurement and address biases related to sensor response time?” by characterizing the temperature and flow speed dependence of a suite of oxygen optodes that are or may become suitable for profiling applications. This work provides a novel approach for estimating sensor response time based on physical principles from temperature, salinity, and flow speed measurements. In Chapter 3, particulate backscatter data from the global BGC Argo float array is used to better constrain metrics of the biological carbon pump for both small and large sinking particles. Results from this work find that the transfer efficiency, which is the fraction of carbon exported out of the surface ocean that makes it to a specified depth horizon and is an important metric because deeper export results in longer carbon sequestration times, is high at low latitudes and low at high latitudes. In Chapters 4 and 5, BGC-Argo oxygen data is used in combination with other observational oxygen datasets to evaluate how effectively current ocean observing systems can spatially interpolate sparse and irregularly gridded observations onto a uniform grid, using temperature and salinity variability, in the subpolar North Atlantic. These Chapters leverage machine learning and compare results to previously published gridded oxygen products. Ultimately, this thesis work spans various spatial and temporal scales, tackling important questions in ocean observing from the sensor to global scale, with additional benefits of reducing uncertainties in sensor measurements and global fluxes, all of which are necessary for understanding and modeling the current state of the ocean to better model the future one.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Toward new maps of basal melt rate in Antarctic grounding zones through inverse modeling of tidal flexure with ICESat-2</title>
<link href="https://hdl.handle.net/1721.1/165552" rel="alternate"/>
<author>
<name>Hendley Elgart, Faye M.</name>
</author>
<id>https://hdl.handle.net/1721.1/165552</id>
<updated>2026-04-22T03:01:29Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Toward new maps of basal melt rate in Antarctic grounding zones through inverse modeling of tidal flexure with ICESat-2
Hendley Elgart, Faye M.
In Antarctica, the grounding line is the triple junction where ice meets ocean meets earth, and grounded ice sheets become floating ice shelves. In the past decade, the surrounding area, termed the grounding zone, has come to be recognized as one of the most dynamic and sensitive indicators of change in the Antarctic. Ice shelves float up and down on ocean tides, but in the grounding zone, the ice shelf is mechanically coupled to the upstream grounded ice and flexes rather than floats. Here, we develop an observationally-constrained inversion based on the tidal flexure of ice shelves and ICESat-2 laser altimetry data to make new estimates of ice thickness, ice thickness gradient, ice rheological properties, and ultimately, basal melt rate, in grounding zones of the two largest Antarctic Ice Shelves. We find that the effective Young’s modulus of ice varies significantly in space, both on and among ice shelves, and that estimates of ice thickness in the grounding zone made by assuming ice shelves are in hydrostatic equilibrium may locally underestimate ice thickness on the order of 10-15 percent. Further, we calculate basal melt rate near the grounding line based on conservation of mass and find that ice thickness gradient is a first-order control on the spatial variation of basal melt rate, and using a flexure-inferred versus hydrostatically-inferred ice thickness requires differing interpretations of the oceanographic context close to the grounding line. As basal melt rate is one of the single greatest sources of uncertainty in modeling the rate and amount of future sea level rise from Antarctica, this may have far-reaching implications for ice sheet modeling.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>From Extraction to Retrieval: A Graph-Enhanced Framework for&#13;
Spatio-Temporal Reasoning in Historical Legal Documents</title>
<link href="https://hdl.handle.net/1721.1/165551" rel="alternate"/>
<author>
<name>Liu, Yifeng</name>
</author>
<id>https://hdl.handle.net/1721.1/165551</id>
<updated>2026-04-22T03:07:05Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">From Extraction to Retrieval: A Graph-Enhanced Framework for&#13;
Spatio-Temporal Reasoning in Historical Legal Documents
Liu, Yifeng
Accurate understanding and querying of historical legal property documents remains a significant challenge for urban planning research. These records typically exist only in analog format—scanned images with inconsistent quality, archaic language, and no structured metadata. This limitation severely hinders systematic analysis of how discriminatory housing practices, particularly racial covenants, shaped city development patterns. While researchers have begun applying Generative AI systems to assist with legal documentation work,1 fundamental challenges persist in retrieval accuracy, model hallucination, and reliable extraction of structured facts from unstructured historical text. Using racial covenant analysis as a test case, this thesis addresses two interconnected challenges. Information Extraction: How can structured spatio-temporal information be accurately extracted from degraded historical documents? Reasoning at Scale: How can retrieval systems maintain accuracy when answering complex queries requiring multi-hop reasoning across thousands of documents with temporal and spatial constraints? To address the first challenge, a document processing pipeline was developed and applied to 569 historical deed records from a test subset of the Massachusetts Covenants Project, spanning 1861–1930 in North Middlesex County. The pipeline integrates optical character recognition, named entity extraction, and geographic information systems to transform scanned deeds into structured spatio-temporal data. The case study demonstrates successful extraction of policy-relevant keywords and accurate geolocation, achieving 64.9% complete accuracy across all documents (or 76.3% when considering only documents containing extractable geographic information), validating the e!ectiveness of this approach for systematically analyzing discriminatory housing patterns. The pipeline has been released as an open-source tool2 and is currently being packaged for deployment by MassHousing, a state a!ordable housing agency, to support ongoing collaborative research. While the pipeline produces structured data, querying this information at scale presents its own challenges. To address this second problem, a Graph RAG (Graph-based RetrievalAugmented Generation) framework is adapted and optimized, with its knowledge graph structure designed to specifically encode the spatio-temporal relationships inherent in historical deeds. Through controlled experiments on 2,000 synthetic documents mirroring real deed characteristics, it is demonstrated that the spatio-temporal-optimized Graph RAG achieves an overall F1 score of 0.598, compared to 0.007 for traditional vector-based RAG—an absolute improvement of 0.591 in F1 score. Notably, vector RAG performance degrades significantly when scaling from 100 to 2,000 documents, while the proposed method maintains stable accuracy. Performance was further benchmarked across a five-level query complexity hierarchy, with Graph RAG achieving particularly strong results on multi-hop queries (F1: 0.923) and temporal reasoning tasks, highlighting the critical role of graph construction and query parsing for complex spatio-temporal tasks. These dual contributions establish a replicable framework for historical document analysis in urban planning research, comprising an open-source processing pipeline achieving 64.9% complete accuracy (76.3% on valid samples) and a retrieval architecture that maintains performance at scale. The methods generalize to legal document review, housing policy analysis, and other domains requiring structured, scalable reasoning over large archival collections.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Essays in Macroeconomics and Labor Economics</title>
<link href="https://hdl.handle.net/1721.1/165550" rel="alternate"/>
<author>
<name>Di Tella, Isabel</name>
</author>
<id>https://hdl.handle.net/1721.1/165550</id>
<updated>2026-04-22T03:02:35Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Essays in Macroeconomics and Labor Economics
Di Tella, Isabel
This dissertation examines how institutional and behavioral frictions shape aggregate economic outcomes. Combining quasi-experimental methods from applied microeconomics with theoretical frameworks from macroeconomics, I analyze three dimensions of how labor market policies and norms influence employment dynamics and macroeconomic fluctuations.&#13;
&#13;
The first chapter investigates how labor market institutions affect the propagation of nominal shocks in inflationary environments. Conventional wisdom suggests that inflation can "grease" labor market adjustments by facilitating real wage changes, but institutional wage-setting may alter this mechanism. We address this question by studying Brazil's annually indexed minimum wage in a high-inflation context. Using administrative data, we show that workers exposed to the policy experience fewer month-to-month wage increases before indexation events, and that firms anticipate the policy by rigidifying wages of workers who will be newly bound. We evaluate the macroeconomic implications of these features by introducing a cost-push shock to a New Keynesian model with heterogeneous labor and an indexed minimum wage. While staggered indexation amplifies the inflation-as-grease mechanism by introducing nominal rigidities, anticipation dampens it via intertemporal substitution. Overall, amplification dominates since cost-push shocks have a stronger "greasing" effect compared to a setting where the minimum wage indexes every period. Our findings demonstrate that even in high-inflation environments, the institutional structure of wage-setting fundamentally shapes how shocks propagate through the economy.&#13;
&#13;
The second chapter broadens the analysis of how institutions shape middle-income country's labor markets, focusing on informality. We analyze the Venezuelan refugee crisis in Colombia to separately identify the effect of informal immigration and work permit policies on labor markets. Using a Synthetic Instrumental Variables design, we find that the informal labor supply shock displaced native workers in both the informal and formal sectors, indicating high substitutability between worker types (elasticity approximately 11). Using a triple difference-in-differences design, we find that work permits reduced competition in the informal sector while increasing it in the formal sector. Using a model, we estimate this created 24,440 new formal jobs and approximately $43 million in annual tax revenue. Our results also suggest that work permits create productivity spillovers through reduced skill mismatch, providing economic rationale for immigrant integration policies.&#13;
&#13;
The third chapter investigates whether gender norms lead to inefficient resource reallocation following employment shocks. Leveraging rich longitudinal data from the UK on couples' employment, time use, and self-reported gender norms, we test whether gender norms prevent households from achieving income-maximizing arrangements after negative employment shocks. We find that after a layoff, men are more likely than women to return to work in the long run. This asymmetry is fully explained by women who subscribe to traditional gender norms: progressive women have the same labor market response to layoffs as men. These findings reveal how deeply embedded behavioral norms can generate persistent labor market frictions with macroeconomic consequences.&#13;
&#13;
Together, these chapters demonstrate how institutional design and behavioral patterns create frictions that fundamentally alter aggregate outcomes, providing policy-relevant insights for middle-income economies and beyond.&#13;
&#13;
JEL Codes: E24, E26, E31, J16, J61, O54
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Coordination Chemistry at Boron: Reactivity, Electronic Structure, and Optical Properties Studies Across the Main Group</title>
<link href="https://hdl.handle.net/1721.1/165549" rel="alternate"/>
<author>
<name>Frey, Nathan C.</name>
</author>
<id>https://hdl.handle.net/1721.1/165549</id>
<updated>2026-04-22T03:04:39Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Coordination Chemistry at Boron: Reactivity, Electronic Structure, and Optical Properties Studies Across the Main Group
Frey, Nathan C.
Boron, owing to its vacant pz orbital, has historically enabled the synthesis of diverse Lewis acid-base adducts. The research herein focuses on the structure, bonding, and reactivity of a range of Lewis base-stabilized neutral, cationic, radical, and anionic boron-containing systems. The utilization of various Lewis basic ligands, such as N- heterocyclic carbenes (NHCs), cyclic alkyl(amino) carbenes (CAACs), and phosphines, has enabled the synthesis and study of electron-rich boron-centered radicals, anions, and frustrated Lewis pairs (FLPs). These systems have been shown to participate in discrete bond  activation processes, including single electron transfer and nucleophilic attack. In parallel, carbene and carbone ligands have facilitated the isolation of luminescent borafluorenium ions with tunable optoelectronic and stimuli-responsive properties. As a result, boron-centered molecules can be leveraged as key tools for various applications, including hydrogen storage, bond activation reactions, novel heterocycle formation, and stimuli-responsive materials. In conjunction with experimental results, density functional theory has been used to propose reaction mechanisms, identify bonding patterns, and  understand key optoelectronic properties within these systems. These results collectively advance the understanding of coordination chemistry involving redox-flexible boron molecules while highlighting their reactivity and potential as functional molecular materials. Chapter 2 focuses on the synthesis of dimethylamineborane-bound magnesium(II) centers supported by NHC ligands. These species were shown to dehydrocouple dimethylaminebo-rane, yielding stoichiometric amounts of dihydrogen. By using various techniques, including NMR spectroscopy and DFT, the migratory behavior of dimethylamine borane within the magnesium complexes is investigated. Chapter 3 describes the activation of elemental sulfur (S 8 ) and diphenyl dichalcogenides using the CAAC-stabilized borafluorene radical and anion. From these non-selective reactions, sulfur chains of varying length (S 8 , S 7 , S 4 , and S 2 ) were each identified and analyzed using experimental and theoretical methods. The corresponding borafluorene-phenylchalcogenide species were analyzed using spectroscopic techniques and displayed characteristics consistent with an internal heavy atom effect. Chapter 4 highlights the ring expansion reactivity of a borinine-containing FLP towards various chalcogen-containing substrates. Subsequent reduction of these species yielded di- boracyclonone molecules bridged by a µ 2 chalcogenide atom. Halide abstraction from the 3 parent FLP yielded an analogous species with a formal chloronium ion bridging the two boron atoms. DFT was used to provide insight into reaction mechanisms and structure and bonding within each species. Chapter 5 depicts the synthesis and photophysical characterization of borafluorenium ions stabilized by hexaphenylcarbodiphosphorane. By installing 3,3’-dimethoxy substituents on the borafluorene core and changing the counteranion from bromide to tetrakis(3,5- bis(trifluoromethyl)phenyl)borate, pronounced changes in stability and optical properties were observed. Substantial increases in fluorescence quantum yields were invoked from solution state to solid state, indicating aggregation-induced emission behavior.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Advances in Bootstrap Embedding Towards Large Molecular Systems</title>
<link href="https://hdl.handle.net/1721.1/165548" rel="alternate"/>
<author>
<name>Weisburn, Leah P.</name>
</author>
<id>https://hdl.handle.net/1721.1/165548</id>
<updated>2026-04-22T03:02:47Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Advances in Bootstrap Embedding Towards Large Molecular Systems
Weisburn, Leah P.
In the pursuit of a quantitative understanding of molecular energetics, theoretical chemistry methods must carefully balance accuracy with computational cost. This challenge is particularly acute in quantum chemical approaches, which aim to describe electronic structure and interactions with high fidelity but whose exact solutions scale exponentially with system size. Quantum embedding techniques address this challenge by exploiting the locality of electron correlation to reduce computational expense. Among these, bootstrap embedding (BE), developed in the Van Voorhis group, offers a compelling compromise between the steep scaling of correlated wavefunction methods and their ability to accurately describe chemical systems. BE achieves this by partitioning molecules or solids into fragments, treating each fragment at a high level of theory, and recombining the fragment results to recover correlated-level descriptions of extended systems.&#13;
&#13;
In this thesis, we present several developments that extend this linear-scaling, wavefunction-in-wavefunction embedding framework to larger molecular systems and dense basis sets, often beyond the reach of competing approaches. We demonstrate that localizing orbitals using intrinsic atomic orbitals (IAOs) in large basis sets yields highly accurate results that systematically converge toward full-system energies as fragment sizes increase. This localization also accelerates convergence and enables more efficient integral transformations. Using fragments that extend two coordination shells beyond a central atom, we consistently recover more than 99.7% of the total correlation energy across all tested systems and basis sets.&#13;
&#13;
Building on this localization strategy, we introduce an alternative fragment construction scheme designed specifically for large basis sets. This approach employs cluster natural orbitals (CNOs) to capture interactions between each fragment and its environment, augmenting the fragment spaces in a manner inspired by local correlation methods. The inclusion of CNOs significantly improves the accuracy of BE calculations, and when combined with extrapolation techniques, enables the recovery of more than 99% of the total correlation energy in double-zeta basis sets, often outperforming the BE(3) result where calculable.&#13;
&#13;
We further introduce a mixed-basis-set framework that enables BE calculations at the CCSD level for systems containing hundreds of atoms in triple-zeta basis sets. We combine a multiscale basis-set description with the ensemble of overlapping fragments, leveraging the locality of chemically-important interactions, to recover over 99% of the target BE energy for systems well beyond traditional size limits. When coupled with QM/MM techniques, this approach is demonstrated on extended biological systems containing approximately 40,000 atoms.&#13;
&#13;
In addition, we explore the application of BE in a different computational regime by employing selected configuration interaction (SCI) as the fragment solver. We show that incorporating SCI within the BE framework reliably extends its applicability to systems containing tens of hydrogen atoms and suggests a viable path toward treating carbon-based molecules. This represents a substantial expansion beyond the conventional capabilities of SCI and points toward the possibility of achieving near–full configuration interaction accuracy with a linearly scaling approach.&#13;
&#13;
Finally, we describe the implementation of these methods and others in the open-source software package QuEmb, which enables the broad use and further development of BE. Through this platform, we aim to facilitate the application of BE to new classes of systems and encourage collaborative efforts to continue advancing the method.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Power, Land, and the Limits of Reshoring: Infrastructure Sequencing and the New Geography of U.S. Industrial Development</title>
<link href="https://hdl.handle.net/1721.1/165547" rel="alternate"/>
<author>
<name>Deng, Larry</name>
</author>
<id>https://hdl.handle.net/1721.1/165547</id>
<updated>2026-04-22T03:07:02Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Power, Land, and the Limits of Reshoring: Infrastructure Sequencing and the New Geography of U.S. Industrial Development
Deng, Larry
The United States is undergoing a renewed push toward domestic industrial production driven by geopolitical fragmentation, supply-chain disruptions, automation, and federal industrial policy. Despite unprecedented levels of announced reshoring investment, realized manufacturing output growth has slowed, revealing a growing gap between intent and execution. This thesis argues that this divergence is not cyclical, but structural. Specifically, it contends that U.S. reshoring is constrained less by capital availability or corporate willingness than by regional capacity to deliver developmentready land and electrical power at scale, in the correct sequence, and within commercially viable timelines. Drawing on reshoring data, trade-flow analysis, industrial real estate research, and utility system planning documents, the thesis demonstrates how land-use constraints, grid congestion, interconnection delays, and fragmented institutional coordination have emerged as binding limits on industrial feasibility. The analysis develops a feasibility framework that links land readiness, logistics infrastructure, construction economics, and energy generation, transmission, and utility sequencing to reshoring outcomes. This framework is applied through a case study of Apex Industrial Park in Southern Nevada, which illustrates how anticipatory infrastructure investment, large-scale industrial zoning, and coordinated utility planning can convert reshoring demand into operational capacity. By integrating national data with a place-based case study, this research provides a structured approach for evaluating where industrial reshoring is likely to succeed and where structural constraints will continue to limit execution, with implications for developers, investors, and policymakers.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dynamics and impacts of toxic Alexandrium catenella blooms in the Pacific Arctic</title>
<link href="https://hdl.handle.net/1721.1/165546" rel="alternate"/>
<author>
<name>Fachon, Evangeline</name>
</author>
<id>https://hdl.handle.net/1721.1/165546</id>
<updated>2026-04-22T03:02:59Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Dynamics and impacts of toxic Alexandrium catenella blooms in the Pacific Arctic
Fachon, Evangeline
Recent warming in the Pacific Arctic region is facilitating the emergence of harmful algal blooms (HABs) in polar waters, posing a significant threat to northern communities and ecosystems. Of particular concern is the dinoflagellate Alexandrium catenella, a cyst-forming species that produces a potent suite of paralytic shellfish toxins (PSTs). In this thesis, Pacific Arctic bloom dynamics are explored in the context of the meroplanktonic life cycle of Alexandrium, revealing the lasting impacts of bloom events upon this region. Building upon previous work that characterized a massive accumulation of resting Alexandrium cysts on the Chukchi shelf, the implications of cyst bed disturbance and resuspension for bloom initiation were investigated. Although there is currently a narrow seasonal window within which physiological and environmental conditions align to promote bloom initiation, this interval may become wider under continued Arctic borealization. In the summer of 2022, a large, concentrated, and highly toxic bloom of Alexandrium was tracked in real-time as it progressed northward through the Bering Strait region. The high resolution at which this bloom was observed provided the opportunity to initiate community event response, as well investigate the hydrodynamic drivers contributing to the extraordinary density, scale, and toxicity of this event. Little is currently known about the uptake and depuration of PSTs in Arctic taxa, introducing significant challenge into modeling trophic toxin transfer. Following the 2022 bloom, toxicity in a bivalve population of Macoma calcarea on the southern Chukchi shelf was measured over three years, showing that this species serves as a reservoir for PSTs in the food web by retaining significant toxin levels for over a year after a bloom event. Beyond the persistence of PSTs in the ecosystem, advected blooms have the potential to create lasting impacts by sustaining and shaping the Chukchi shelf Alexandrium cyst bed. A population study of Alexandrium isolates using microsatellite markers revealed high diversity and little spatial differentiation across the study region. However, a significant shift in population genetic structure was detected over time, likely resulting from new cyst inputs by advected blooms from the Bering Sea. These results highlight the dynamic nature of the Chukchi cyst bed, which serves as a terminal deposition site that is formed and maintained by sub-Arctic sources. This thesis adds significantly to our understanding of the relationship between bloom dynamics and algal toxin risks in warming Pacific Arctic waters, providing insights that can be used to shape future risk mitigation and response efforts.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Tide is High: Tidally-Associated Genetic Markers of an Invasive Coastal Crab in the Northwest Atlantic</title>
<link href="https://hdl.handle.net/1721.1/165545" rel="alternate"/>
<author>
<name>Bakari, Kela</name>
</author>
<id>https://hdl.handle.net/1721.1/165545</id>
<updated>2026-04-22T03:06:58Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">The Tide is High: Tidally-Associated Genetic Markers of an Invasive Coastal Crab in the Northwest Atlantic
Bakari, Kela
The ecology of invasive marine species holds many mysteries, ranging from the precise mechanics of adaption in foreign environments to the heritability of behaviors in the native range, and the globally-invasive crab Carcinus maenas (L.) provides a good model for looking into the connection between environment, genetics and behavior in invasive populations. To investigate this relationship, I sampled Carcinus maenas adults and juveniles from an array of sites along the Northwest Atlantic coast and examined how local tidal conditions affected genetic variation and allele frequency patterns in four candidate markers hypothesized to be associated with tidal amplitude. Expecting the patterns I revealed to closely mirror those previously discovered in the native range, I found that one of the four tidal markers I used displayed the same allele frequency trend in both the native and invasive ranges. This suggests that tidal amplitude is a likely driver of selection in this species in both native and foreign environments, but sampling more sites in the future is needed for a more conclusive assertion of this idea. Nevertheless, the results of this study offer a promising lead on the relationship between tidal amplitude and genetics in Carcinus maenas, bringing us closer to solving the mystery of environment-behavioral coupling in marine species.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tunnels in the ocean: formation and propagation of interannual water&#13;
mass anomalies in global subtropical cells</title>
<link href="https://hdl.handle.net/1721.1/165544" rel="alternate"/>
<author>
<name>Hersh, Cora Alden</name>
</author>
<id>https://hdl.handle.net/1721.1/165544</id>
<updated>2026-04-22T03:05:11Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Tunnels in the ocean: formation and propagation of interannual water&#13;
mass anomalies in global subtropical cells
Hersh, Cora Alden
Subtropical cells connect subducting subtropical waters to upwelling sites along the equator. Water mass properties (e.g. salinity, temperature) are set at the surface and subducted along ventilated pathways that flow toward upwelling sites in the tropics. This tight link between the subtropics and the tropics, on a scale of 5-15 years, is well-established in a time-averaged sense by modeling and observations. Recently, evidence has emerged of spice and potential vorticity anomaly persistence along mean flow pathways on isopycnals. In Chapter 2, we provide the first global view of subtropical water mass anomaly propagation, using both an observational dataset and the Estimating the Circulation and Climate of the Ocean (ECCO) state estimate Version 4 Release 4. We find long-lived interannual water mass anomalies that translate along mean advective pathways in all ventilated subtropical gyres. These anomalies, in spice (densitycompensated temperature and salinity) and potential vorticity (ratio of Coriolis parameter to density layer thickness), are detectable over multiple years and several thousand kilometers. Anomalies sometimes reach western boundary and equatorial current systems before being entirely eroded, and thus could form ocean “tunnels” to impact remote climate variability. ECCO successfully captures these phenomena, motivating further study of subtropical thermocline variability using modified-forcing experiments in the ECCO-configured Massachusetts Institute of Technology General Circulation Model (MITgcm) in subsequent chapters. In Chapter 3, we remove the interannual frequency of the input surface forcing over different ocean regions. This allows us to describe the pathways and quantify the impact strength of subtropically-forced water mass anomalies on equatorial variability. We find that interannual forcing over each of the five global subtropical basins creates a detectable impact on equatorial water properties, although the strength varies greatly between basins. We also investigate impacts in the reverse direction, from variability forced over the equator toward the subtropics, and demonstrate potential ocean-based mechanisms through which such variability can propagate. Finally, in Chapter 4, we perform additional ECCO experiments in which we remove the interannual band of wind or buoyancy forcing in order to understand surface forcing drivers of the observed spice variability. We see that while the interannual wind forcing is responsible for fast-moving, high-frequency wave perturbation features in the spice record along subducting pathways, it also creates large, low-frequency spice variability which is anticorrelated with the buoyancy-forced variability. These experiments emphasize the role of the outcrop migration mechanism of spice formation, in which sea surface temperature anomalies cause an isopycnal outcrop to move across the background surface salinity field, particularly in the South Pacific.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Implications of seasonality and asymmetry for ENSO’s&#13;
predictability and future changes</title>
<link href="https://hdl.handle.net/1721.1/165543" rel="alternate"/>
<author>
<name>Carr, Theo</name>
</author>
<id>https://hdl.handle.net/1721.1/165543</id>
<updated>2026-04-22T03:01:42Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Implications of seasonality and asymmetry for ENSO’s&#13;
predictability and future changes
Carr, Theo
The El Niño - Southern Oscillation (ENSO), a coupled ocean-atmosphere phenomenon in the tropical Pacific, is the dominant year-to-year driver of variations in Earth’s climate. Its impacts on temperature and precipitation are felt globally, and particularly in the tropics, where a large fraction of the world’s population lives. While a century of research since the discovery of the Southern Oscillation has advanced understanding of ENSO, there is little consensus about how it will change in the rest of the 21st century, owing to disagreement between different state-of-the-art climate models. In an effort to understand this disagreement, and improve understanding of ENSO’s future changes, this thesis investigates aspects of two ENSO features – seasonality and asymmetry – whose projected changes haven’t been well-studied, despite their prominence in observations. First, we evaluate an alternative framework – based on the Koopman operator – for representing asymmetry and seasonality in a highly idealized, conceptual model of ENSO. While conceptual ENSO models are widely used to diagnose ENSO stability in observations and global climate models, they rely on nonlinear parameterizations which may misrepresent the processes giving rise to ENSO asymmetry. We show that the Koopman-based approach, based on finding a nonlinear transformation which makes ENSO look symmetric, can reproduce the most salient aspects of ENSO’s evolution asymmetry, including the faster decay of El Niños during boreal spring and the higher frequency of multi-year La Niñas. Next, we study projected changes in ENSO’s seasonality and asymmetry in a global climate model over the course of the 21st century. We find that changes in asymmetry contribute significantly to the late-21st century decrease in ENSO amplitude projected by the model, with a weak increase in La Niña intensity opposing a much larger decrease in El Niño intensity. We show that this change is consistent with the projected weakening of the equatorial Pacific’s zonal temperature gradient, a change which limits the potential intensity of El Niños, but not La Niñas. Finally, we switch our focus to precipitation variability in the U.S. Midwest, and in particular, the ocean-to-land atmospheric moisture transport which fuels this variability. Oceanic moisture sources (vs. those from land) have become more important in recent decades, and we quantify the relative contributions from Pacific and Atlantic moisture sources and how they vary seasonally and over time. We find that an intensification of the Great Plains Low-Level Jet is correlated with an increase in the fraction of Midwest rainfall that originates from the ocean (vs. from land surfaces). While this effect is observed on interannual timescales and likely modulated by ENSO, it is most pronounced on synoptic timescales, when upper-level disturbances amplify the low-level jet and moisture transport to the Midwest; thus here we investigate it independent of ENSO. Overall, this thesis highlights the potential importance of nonlinearity and seasonality in ENSO’s future changes and suggests one alternative framework for their representation in conceptual models.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Prediction of dissolution and nucleation in silicates using&#13;
machine learning force fields</title>
<link href="https://hdl.handle.net/1721.1/165542" rel="alternate"/>
<author>
<name>Roy, Swagata</name>
</author>
<id>https://hdl.handle.net/1721.1/165542</id>
<updated>2026-04-22T03:01:49Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Prediction of dissolution and nucleation in silicates using&#13;
machine learning force fields
Roy, Swagata
Understanding how silicates react in water is crucial in a range of fields, from geology and cement chemistry to the synthesis of zeolite catalysts and precipitated silica. Although reactive simulations offer powerful insights at the molecular level, balancing accuracy and scale in these condensed-phase calculations remains a significant challenge. With the advent of machine-learned potential for materials, large-scale calculations seem achievable with high accuracy. In this thesis, machine learning and data-driven analyses are extended to capture complexities inherent to silica gelation, which were then applied to advance the mechanistic understanding of silica polymerization under different environmental conditions using molecular dynamics and kinetic Monte Carlo simulations. We developed a robust reactive machine-learned potential to accurately capture silicate-water reactivity. To ensure the robustness of the model, we introduce a new and general active learning strategy based&#13;
on the attribution of the model uncertainty that automatically isolates uncertain regions of bulk simulations to be calculated as small-sized clusters. The potential reproduces the static and dynamic properties of liquid water and solid crystalline silicates, despite having been&#13;
trained exclusively on cluster data. We applied the potential to obtain energy barriers for the formation of silica oligomers of any shape and size. Using this, we used a kinetic Monte Carlo study to study the effect of pH and temperature on the dynamics evolution of amorphous silica gel by identifying small building units leading to precipitated silica or crystalline zeolite depending on different conditions. Realizing limitations in the assumptions involved in the Kinetic Monte Carlo study and to incorporate long-range interactions in the study, we trained a coarse grained potential to replicate the silica polymerization dynamics. The potential was trained successfully by distilling a foundation model and was able to accurately capture the time evolution of silicate clusters but had its own limitations in terms of size and time. In general, this thesis provides a detailed description of the preliminary stages of silica oligomerization that lead to an amorphous gel acting as precursors for precipitated silica or zeolites.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Probing the Logic of DnaJB6 Oligomerization</title>
<link href="https://hdl.handle.net/1721.1/165541" rel="alternate"/>
<author>
<name>Petty, Aaron</name>
</author>
<id>https://hdl.handle.net/1721.1/165541</id>
<updated>2026-04-22T03:08:48Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Probing the Logic of DnaJB6 Oligomerization
Petty, Aaron
Protein misfolding and aggregation, a characteristic molecular phenotype of neurodegenerative disease, is mediated by a class of proteins called molecular chaperones. One such protein, DnaJB6, potently suppresses the aggregation of polypeptides such as amyloid-β and tau and has been observed to self-oligomerize, but the connection between these properties is unknown. Previous work to understand DnaJB6 has not elucidated this connection, in part because the dynamic nature of these oligomers makes them difficult to analyze by conventional techniques. I hypothesize that DnaJB6 oligomers serve as inactive reservoirs from which dimers, the active subunit, dissociate upon binding to misfolding client and engage Hsp70s to facilitate processing. To test this hypothesis, I have generated point variants of DnaJB6 to perturb oligomerization and tested their biophysical properties and biochemical activity. My analysis demonstrates that aromatic residues in the disordered region are critical for oligomerization and affirms my hypothesis that smaller assemblies of the chaperone are responsible for its anti-aggregation activity. This work enhances our foundational biophysical understanding of DnaJB6, which serves as a basis for the development of DnaJB6-inspired therapeutics to combat neurodegenerative disease.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Planning EV Charger Placements with Heterogeneous Charging Technologies</title>
<link href="https://hdl.handle.net/1721.1/165540" rel="alternate"/>
<author>
<name>Allen, Julia R.</name>
</author>
<id>https://hdl.handle.net/1721.1/165540</id>
<updated>2026-04-22T03:06:48Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Planning EV Charger Placements with Heterogeneous Charging Technologies
Allen, Julia R.
When developing public urban charging infrastructure for electric vehicles (EVs), key questions are how many chargers to deploy, where to locate them, and what charger technology to utilize. This paper introduces a facility location model with multiple facility types that jointly optimizes the placement and type of EV chargers to minimize total infrastructure costs while meeting spatially distributed demand. We then study the benefit of a hybrid mix of chargers relative to single-technology solutions, demonstrating that the gains from hybrid solutions depend critically on demand pooling structures. In particular, hybrid solutions yield the highest benefit when there is heterogeneity in the amount of demand served at each location. We complement our theoretical results through a data-driven case study based on the City of Detroit, developing an end-to-end pipeline to solve the problem for real cities. First a computer vision model finds feasible curbside charging locations by analyzing images from Google Street View, and then an optimization model determines the optimal placement and technology of chargers in Detroit. This pipeline is demonstrably more effective than either machine learning or optimization alone. This work provides both analytical insight and a scalable methodology to support cities in designing cost-effective EV charging networks.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Structuring Heterogeneous Real Estate Market Evidence Using LLMs: A Provenance-Aware Analytical Framework</title>
<link href="https://hdl.handle.net/1721.1/165539" rel="alternate"/>
<author>
<name>Hahmann, Luca</name>
</author>
<author>
<name>Xie, Richard</name>
</author>
<id>https://hdl.handle.net/1721.1/165539</id>
<updated>2026-04-22T03:07:09Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Structuring Heterogeneous Real Estate Market Evidence Using LLMs: A Provenance-Aware Analytical Framework
Hahmann, Luca; Xie, Richard
Real estate market analysis at early analytical stages relies on evidence drawn from heterogeneous public and semi-public sources, including brokerage research, administrative datasets, planning documents, and narrative commentary. These inputs differ systematically in scope, definition, temporal framing, and institutional construction. Market indicators are frequently consumed through static reports and summary tables that obscure provenance, comparability constraints, and evidentiary gaps. As a result, analytical conclusions often depend on implicit assumptions about how market information is constructed and aligned before formal underwriting or quantitative modeling begins. This thesis develops an evidence-centric framework for structuring and inspecting real estate market information prior to inference, using large language models (LLMs) to translate unstructured report artifacts into structured evidence objects. The framework treats market indicators, narrative claims, and source dependencies as constructed analytical objects. Each observation is represented together with explicit metadata describing geographic scope, temporal reference, definitional disclosure, and upstream data dependencies. This representation supports disciplined comparison across sources and makes uncertainty, non-equivalence, and missing context explicit. The methodological contribution consists of a KPI taxonomy, a context-aware data model, and a layered processing architecture. Observations are preserved with their original construction context and aligned only when comparability conditions are satisfied. Uncertainty is encoded through coverage, recency, and dispersion indicators. Visualization functions as an interface for evidentiary inspection, enabling users to navigate indicators, examine parallel representations, and trace reported values to their sources. The framework is demonstrated through an application to U.S. multifamily market reports. A single-source case study illustrates how brokerage reports combine headline KPIs, narrative claims, submarket tables, time-series elements, and transaction summaries within a single artifact. A multi-source case study examines contemporaneous reports for the same market and shows how differences in segmentation logic, measurement conventions, and temporal aggregation shape apparent agreement and disagreement. In both cases, structural non-equivalence remains visible as an analytical feature. The results show that explicit representation of evidentiary structure supports clearer interpretation of market claims independent of predictive modeling. The thesis positions LLM-enabled structuring as foundational infrastructure for real estate market analysis and as a prerequisite for downstream quantitative and causal research. Future work may extend the framework to additional data sources, longitudinal analysis of reporting behavior, and institutional deployment across investment workflows.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Limits of Literature-Conditioned Large Language Models for Predicting Behavioral Experiments</title>
<link href="https://hdl.handle.net/1721.1/165538" rel="alternate"/>
<author>
<name>Na, Robin</name>
</author>
<id>https://hdl.handle.net/1721.1/165538</id>
<updated>2026-04-22T03:07:22Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Limits of Literature-Conditioned Large Language Models for Predicting Behavioral Experiments
Na, Robin
Large language models (LLMs) have recently shown potential in various capabilities contributing to scientific progress. Recent work shows that they can predict experimental outcomes as accurately as human forecasters. Other works show that retrieval-augmented generation (RAG)– conditioning LLMs on relevant documents or databases–can improve the quality of model outputs across various research synthesis tasks. Here, we combine these two streams of work and ask: does conditioning LLMs on published research articles improve their predictions of outcomes in new behavioral experiments? We test this using 20 new experiments on peer punishment in cooperation dilemmas, where the prediction task is to determine how much punishment mechanisms increase or decrease group welfare across different settings. Consistent with prior findings, the baseline offthe-shelf GPT-4.1 model performance matches or exceeds every human (laypeople and experts) forecaster we tested. We then condition the model on 1,398 published papers studying punishment, testing both individual papers and collections constructed by grouping papers in different ways (e.g., theory-focused versus empirical studies, recent versus older publications, high-impact versus lower-impact journals). To our surprise, conditioning on individual papers rarely reduces prediction error, and in many cases it makes predictions worse. Conditioning on collections substantially increases the model’s confidence without increasing its accuracy. Simply providing research articles to language models does not seem to improve predictions of outcomes in new experiments, suggesting that more effective systems may require different approaches to representing and processing scientific evidence.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modeling Complex Evolution of Slow to Fast Earthquakes on Simple and Heterogeneous Faults</title>
<link href="https://hdl.handle.net/1721.1/165537" rel="alternate"/>
<author>
<name>Sun, Yudong</name>
</author>
<id>https://hdl.handle.net/1721.1/165537</id>
<updated>2026-04-22T03:06:19Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Modeling Complex Evolution of Slow to Fast Earthquakes on Simple and Heterogeneous Faults
Sun, Yudong
The goal of my PhD research is to understand the behavior of earthquakes and slow slip events on fault systems ranging from simple planar geometries to complex fault networks with structural and material heterogeneity. To achieve this, I developed both analytical and numerical models to investigate the processes of nucleation, propagation, and termination. I investigate the occurrence of back-propagating earthquake fronts—secondary rupture fronts that travel in the reverse direction of the main rupture. Through dynamic rupture simulations using rate-and-state friction, I demonstrate that such phenomena can emerge even on frictionally homogeneous faults, provided that the rupture is unilateral and driven by stress gradients. An analytical model shows that velocity-dependent friction destabilizes steady crack-like propagation, leading to transitions between pulse and crack modes and generating back-propagating fronts. These findings suggest that back propagation may be more common than previously recognized, and does not require structural heterogeneity. I examine how fault roughness affects the dynamics of slow slip events (SSEs). Using quasi-dynamic simulations of rough faults with rate-and-state friction, I show that variations in normal stress, serving as a proxy for geometric roughness, induce irregular rupture patterns. SSEs exhibit temporal clustering, diverse rupture speeds, and back-propagating fronts. These arise from stress oscillations caused by roughness-modulated frictional properties, offering a new mechanism for the complex SSE evolution seen in geophysical observations. I perform quasi-dynamic and fully-dynamic earthquake simulations using rate-and-state friction to reproduce laboratory experiments on 760 mm-long faults with three velocity-weakening patches separated by velocity-strengthening barriers composed of PMMA and Teflon. Simulations show that multi-patch ruptures become more frequent under higher normal stress and narrower barriers, consistent with laboratory observations. Fully-dynamic simulations, which incorporate elastic wave propagation, allow ruptures to more easily overcome barriers and better reproduce the observed rupture size and speed compared to quasi-dynamic simulations. I develop novel 2.5D earthquake cycle simulations using boundary element methods to study the evolution of foreshocks and aftershocks in fault systems. This approach offers the computational efficiency of 2D modeling while incorporating more realistic 3D stress transfer effects. Collectively, these works provide new insights into the fundamental physical mechanisms driving both fast and slow fault slip with implications for seismic hazard assessment and earthquake forecasting.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Chemical complexity in high-entropy materials</title>
<link href="https://hdl.handle.net/1721.1/165536" rel="alternate"/>
<author>
<name>Sheriff, Killian</name>
</author>
<id>https://hdl.handle.net/1721.1/165536</id>
<updated>2026-04-22T03:05:57Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Chemical complexity in high-entropy materials
Sheriff, Killian
Materials properties depend strongly on chemical composition, i.e., the relative amounts of each chemical element. In metallic alloys, small changes in composition can alter mechanical strength, thermal conductivity, corrosion resistance, and phase stability. This sensitivity arises from changes in the local chemical environments that atoms experience—features that vary significantly across chemically ordered and disordered phases. In ordered phases, specific atomic motifs repeat periodically, whereas in chemically disordered phases, local chemical environments vary widely with composition and temperature. Both types of phases are essential to high-performance structural alloys, high-entropy materials, and chemically complex catalytic surfaces. Yet, the configurational complexity of disordered phases poses a particular challenge for predictive modeling.&#13;
&#13;
This thesis addresses the fundamental question: "What does it mean to be chemically complex?"&#13;
&#13;
We will see that the understanding of chemical complexity is key to enabling predictive modeling of high-entropy materials across composition, particularly for the modeling of metallic alloys, where disordered solid solutions are the prevalent phases across their phase diagrams. &#13;
&#13;
Traditional approaches to materials design rely on simplified models that fail to capture the intricate interplay between chemical disorder, local atomic environments, and emergent properties. This thesis bridges this gap by combining geometric deep learning with large-scale molecular dynamics simulations to characterize, predict, and control chemical complexity at the atomic scale, ultimately opening up the rational design of next-generation disordered materials with tailored properties.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Benthic meiofaunal and micro-eukaryotic inhabitation of extreme&#13;
environments: Submerged caves and hydrocarbon seeps</title>
<link href="https://hdl.handle.net/1721.1/165535" rel="alternate"/>
<author>
<name>Rohret, Shari M.</name>
</author>
<id>https://hdl.handle.net/1721.1/165535</id>
<updated>2026-04-22T03:01:32Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Benthic meiofaunal and micro-eukaryotic inhabitation of extreme&#13;
environments: Submerged caves and hydrocarbon seeps
Rohret, Shari M.
Benthic meiofauna and microbial eukaryotes comprise diverse taxa that influence biogeochemical cycling and food-web dynamics in aquatic ecosystems. Many inhabit “extreme” environments with steep gradients in parameters such as oxygen, salinity, and organic matter availability, serving as natural laboratories for studying community structure and resilience. This thesis integrates molecular, geochemical, and microscopy-based approaches to investigate the biodiversity, community structure, and cytology of benthic eukaryotes in two chemically stratified systems: submerged caves (Chapters 2 and 3) and hydrocarbon seeps (Chapter 4). Chapter 2 explores the community composition and ecological structuring of benthic meiofauna and microbial eukaryotes across environmental gradients in submerged cave systems of the Yucatan Peninsula and Cozumel Island, Mexico using metabarcoding analysis. Despite a large percentage of unidentified sequences, diverse protistan, metazoan, and fungal taxa were detected, spanning a range of feeding strategies, with community composition differing both between caves and within a single system. Chapter 3 focuses on benthic foraminiferal communities in submerged cave systems using traditional morphological identification and metabarcoding analysis. Living and total (i.e., dead plus living) assemblages of foraminifera in picked samples were compared using a fluorogenic probe to identify living specimens, and a non-vital stain to identify recently living individuals. Living foraminiferal assemblages were recovered in the two cave systems studied, one with anoxic to hypoxic conditions, and the other an oxygenated system. Metabarcoding of cave sediments using foraminifera-specific primers yielded coarse taxonomic resolution, highlighting the need for an improved molecular reference database. Chapter 4 examines the cellular ultrastructure of foraminifera inhabiting hydrocarbon seeps using Transmission Electron Microscopy (TEM). Two extant foraminiferal groups (monothalamids and miliolids) representing early-evolving lineages showed ultrastructural variability between species, with differing feeding strategies observed. Potential adaptations to seep conditions include lipid proliferation, extensive peroxisome-endoplasmic reticulum complexes, and abundant “empty” vacuoles. These studies offer new insights into benthic eukaryotic life in geochemically dynamic systems, highlighting community-level patterns (Chapters 2-3) and organism-level characteristics (Chapter 4). As anthropogenic stressors increasingly impact marine systems, potentially increasing the prevalence of hypoxic, acidic, and eutrophic conditions, understanding how meiofaunal and microbial communities respond will be critical for predicting ecosystem resilience and future biogeochemical change.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mathematical Formulation and Numerical Methods for the Optimization of Novel Biotherapeutics Manufacturing</title>
<link href="https://hdl.handle.net/1721.1/165534" rel="alternate"/>
<author>
<name>Inguva, Pavan Krishna</name>
</author>
<id>https://hdl.handle.net/1721.1/165534</id>
<updated>2026-04-22T03:06:00Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Mathematical Formulation and Numerical Methods for the Optimization of Novel Biotherapeutics Manufacturing
Inguva, Pavan Krishna
The emergence of multiple classes of novel biotherapeutics, such as nucleic acids, and cell and gene therapies, are enabling the efficacious treatment of many diseases. A key part of unlocking the full potential of these novel therapeutics and delivering these life-saving medications to patients is the development of efficient biomanufacturing processes that are able to ensure product quality at scale. To that end, digitalization is currently seen as one of the key enabling technologies for driving advances in the industry. A vital component of digitalization process is a computational model of the system, which can then be leveraged for various objectives such as accelerating process development and deploying advanced process control strategies. In the case of novel biotherapeutics, not only are the manufacturing processes less well understood, these processes and the therapeutic itself can be more complex compared to those for conventional biologics or small molecule drugs. Consequently, the development of mechanistic models for these systems is much harder as there is less established process insight and experimental data available. To address this challenges, this thesis applies concepts and methods from process systems engineering to formulate, develop, and deploy mechanistic models for the production of two classes of biotherapeutics: lipid nanoparticles (LNPs) for nucleic acid delivery, and viral particles. In parallel, ancillary work to develop numerical algorithms to enable the efficient and accurate solution of these models is pursued. This thesis can be broken down into three parts: Part 1 explores the conceptualization and formulation of mechanistic models for LNP and viral particle production. Recognizing the paucity of modeling approaches available in the literature for these systems, the use of first principle concepts such as mass and energy balances and insights from adjacent fields in formulating the models are discussed. Part 2 outlines the development of numerical algorithms for the solution of two classes of partial differential equation systems that are essential for modeling these systems, namely population balance models (PBMs) and phase-field models (PFMs). The proposed method for PBMs uses a combination of variable transformations, specially constructed meshes, operator splitting, and solving the equation at the limit of numerical stability to achieve efficient (in some cases, as low as memory reallocation) and accurate (in some cases to machine precision) solution of many classes of PBMs. For the PFM, a spline approximation is used to regularize the logarithmic nonlinearity found in physically-accurate forms of the Cahn–Hilliard equation which enables its solution at model parameter values otherwise inaccessible. Part 3 showcases the development and deployment of these models with the development of a multi-scale model for LNP production, and the application of advanced process control for a continuous viral bioreactor. The proposed multi-scale model for LNP production adopts incorporates a computational fluid dynamics (CFD) model at the mixer-scale and thermodynamic modeling at the molecular-scale, to yield salient information which is cascaded into a PFM model at the particle-scale. For the control of the continuous viral bioreactor, the use of nonlinear economic model predictive control is demonstrated to be able to achieve a variety of process objectives such as maximizing yield and purity and is also shown to be robust under plant-model mismatch.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Electrochemical Mechanisms in Thermochemical Catalysis</title>
<link href="https://hdl.handle.net/1721.1/165533" rel="alternate"/>
<author>
<name>Lodaya, Kunal</name>
</author>
<id>https://hdl.handle.net/1721.1/165533</id>
<updated>2026-04-22T03:01:20Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Electrochemical Mechanisms in Thermochemical Catalysis
Lodaya, Kunal
Electrochemistry and thermochemical catalysis have historically been viewed as disparate fields with distinct mechanistic paradigms. This divide, along with an inadequate experimental and methodological electrochemical toolkit, has impeded understanding of electrochemical mechanisms in thermochemical catalysis. This dissertation applies both legacy and newly-developed electrochemical approaches to assess the role of coupled half-reactions in three different thermochemical catalytic reactions. We first examine the hydrogenation of nitrate on bimetallic PdCu/C catalysts (Chapter 2) and determine that the reaction proceeds via the coupling of electrochemical hydrogen oxidation on Pd and nitrate reduction on Cu. This understanding is employed to optimize catalyst formulation, determine new bimetallic catalyst pairings with nitrate hydrogenation activity, and improve activity in the state-of-the-art catalyst. In Chapter 3, this mechanistic framework is extended to the Pd-catalyzed vinyl acetate synthesis. We use a combination of liquid-phase and gas-phase electrochemical measurements, with the latter being a new tool developed in our laboratory, to investigate the reaction. This study reveals the bifunctionality of homogeneous Pd(II) species and heterogeneous Pd/C in facilitating the overall oxidation, revising the legacy mechanism for this industrial catalytic reaction. Building on the mechanistic analysis and electrochemical probes developed in Chapters 2 and 3, we investigate the synthesis of ammonia (Chapter 4). Our study challenges the historical mechanism for the reaction, revealing the essential role of interfacial charge transfer in activating and reducing dinitrogen with driving force derived from the coupling of electrochemical half-reactions. Taken together, these studies unravel the role of galvanic coupling in redox thermochemical catalysis, and serve as a call to action for the application of electrochemical methods in mechanistic investigations of catalysis.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Oxidation Chemistry and Secondary Organic Aerosol Formation in Indoor and Outdoor Atmospheres</title>
<link href="https://hdl.handle.net/1721.1/165532" rel="alternate"/>
<author>
<name>Tahsini, Nadia</name>
</author>
<id>https://hdl.handle.net/1721.1/165532</id>
<updated>2026-04-22T03:04:50Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Oxidation Chemistry and Secondary Organic Aerosol Formation in Indoor and Outdoor Atmospheres
Tahsini, Nadia
Particulate matter exerts a significant influence on climate and air quality, including harmful human health impacts. A substantial fraction of particulates are organic aerosols, comprised largely of secondary organic aerosol (SOA) formed from photochemical reactions of volatile organic compounds (VOCs). SOA formation occurs across scales, ranging from the outdoor atmosphere to indoor environments, and improved understanding of this chemistry is required to more accurately quantify impacts on climate and human health. This thesis investigates oxidation chemistry and SOA formation in indoor and outdoor atmospheres, including a focus on peroxy radical (RO₂) chemistry. In the first part of this work, we examine the oxidation of isoprene, an atmospherically abundant biogenic VOC. Most global models currently use SOA yields for isoprene that assume NOₓ linearity, limiting the accuracy under intermediate conditions. Using environmental chamber experiments, we characterize the product distributions and SOA formation from isoprene oxidation under the full atmospheric range of RO₂ regimes. We provide yields for major gas-phase species and aerosol as a function of key RO₂ parameters, highlighting the non-linear NOₓ dependence of SOA contrary to traditional assumptions, which can be used to improve the treatment of isoprene SOA in climate models. The second part of this work investigates how chemistry and volatility interplay for the temperature dependence of SOA formation, focusing on the ozonolysis of α-pinene, another prominent biogenic VOC emitted into the atmosphere. While SOA formation has been shown to be temperature dependent based on volatility effects, the temperature effect of chemistry - especially RO₂ isomerization - is less explored. With environmental chamber experiments and box modeling, we examine how chemistry versus volatility effects impact the overall temperature dependence of SOA, using speciated gas-phase measurements and aerosol-phase analysis. This work provides novel insight on how chemistry and volatility contribute to SOA formation across temperatures, including a focus on RO₂ isomerization effects and corresponding changes in α-pinene product distributions. Finally, we turn to indoor atmospheres, examining the impact of commercial air cleaners on indoor photochemistry and air quality under 222 nm germicidal lamps (GUV₂₂₂). GUV₂₂₂ is effective at killing airborne pathogens, but it generates ozone in the indoor environment, thus initiating unwanted chemistry including SOA formation. Through environmental chamber experiments and modeling, we quantify the reduction of ozone and secondary pollutants by running commercial air cleaners concurrently with GUV₂₂₂. These results highlight the potential benefits of air cleaners to improve indoor air quality across GUV₂₂₂ and non-GUV₂₂₂ settings. Overall, this thesis connects several relevant areas of atmospheric photochemistry, helping improve our understanding of RO₂ chemistry and SOA formation from oxidation of biogenic VOCs, as well as characterizing indoor air quality implications of GUV₂₂₂ and commercial air cleaning technologies.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Metabolic drivers of community dynamics in marine microorganisms</title>
<link href="https://hdl.handle.net/1721.1/165531" rel="alternate"/>
<author>
<name>Jahns, Max A.</name>
</author>
<id>https://hdl.handle.net/1721.1/165531</id>
<updated>2026-04-22T03:02:44Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Metabolic drivers of community dynamics in marine microorganisms
Jahns, Max A.
Marine microorganisms adopt metabolic strategies, the biochemical means by which they acquire energy and nutrients, in part, because of the interactions between biological entities in their community. The eco-evolutionary strategies adopted by marine microbes both shape and are shaped by the environments in which they can live and remain competitive, the flow of carbon and nutrients through the environment, and the structure of the marine ecosystem. While many theories exist to explain the metabolic underpinnings of plankton ecology, there remains significant gaps in our understanding of how organisms fill metabolic niches and the mechanisms underlying these dynamics. This work focuses on three biotic relationships (parasitism, predation, and competition) and how these community dynamics both shape and are shaped by organismal metabolism using planktonic laboratory systems. To test the effects of parasitism and predation, we compared the cosmopolitan marine cyanobacteria Prochlorococcus MED4 lipidome under ideal conditions to its lipidome modulated due to top-down pressures from P-SSP7, a T7-like phage, and Paraphysomonas bandaiensis, a phagotrophic nanoflagellete predator. From cultures containing only Prochlorococcus MED4, we assemble the first complete lipidome of the abundant marine cyanobacteria Prochlorococcus MED4. Using this core lipidome as a baseline, we identify several characteristic ways phage infection alters the fatty acid, phospholipid, and other lipid metabolic pathways in Prochlorococcus. We also describe an unknown mechanism by which the energy storage metabolism of Paraphysomonas bandaiensis is affected by grazing on P-SSP7 infected prey. Next, to test how competitive dynamics shape metabolic niche partitioning, we assemble a novel model system using multiple strains of the marine mixotroph Ochromonas, with differing metabolic requirements. These mixotrophs were grown in competition with Paraphysomonas bandaiensis in batch and chemostatic culture. Generally, mixotrophic metabolism is assumed to confer a competitive advantage through the acquisition of energy and nutrients from multiple pools and the ability to relieve competitive pressures by switching trophic investments away from limiting pathways. Despite this, both obligately phagotrophic strains of Ochromonas tested instead ‘doubled-down’ on phagotrophy in response to competition with Paraphysomonas bandaiensis. Whereas the facultatively phagotrophic strain used in this study, Ochromonas 1391, followed typical mixotrophic competitive behavior of increased investment in phototrophy. These strains also experienced significant growth and energy efficiency tradeoffs because of this investment. We find evidence that this tradeoff may be due to prey nutrition needs or prey quotas in these organisms.&#13;
&#13;
Additionally, we show how metabolic landscapes, i.e. multidimensional conceptualizations of metabolism, can inform metabolic tradeoffs and realized metabolic niches in response to community dynamics. Our results underscore the powerful effects of community interactions and metabolism, and vice versa. The dynamics captured within this dissertation research, inform microbial metabolic niches and how energy and nutrients flow through mixed planktonic communities with complex biotic interactions.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Early life-history ecology of Arctic benthic invertebrates</title>
<link href="https://hdl.handle.net/1721.1/165530" rel="alternate"/>
<author>
<name>Schrage, Kharis</name>
</author>
<id>https://hdl.handle.net/1721.1/165530</id>
<updated>2026-04-22T03:02:02Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Early life-history ecology of Arctic benthic invertebrates
Schrage, Kharis
In this dissertation I explore the abiotic and biotic factors impacting early life-history bottlenecks in the Arctic Ocean and Woods Hole, MA. Many marine invertebrates have a biphasic life-history, with larvae that disperse in the water column then settle to the seafloor. Extreme population bottlenecks occur at larval and juvenile stages, which fundamentally alter adult communities. Yet, marine early life-history ecology is severely understudied, leaving us ill-prepared to predict impacts of a changing environment. The Arctic is warming rapidly, making it a natural laboratory for studying change. In addition, the polar oceans are a severe, cold habitat with extreme seasonality in light and food availability. Thus, directly studying the organisms in this region rather than extrapolating based on patterns at lower latitudes is imperative. My primary objective was to elucidate the early life-history bottlenecks shaping seafloor assemblages in the rapidly warming Arctic. Chapter 2 investigates the natural history of larvae during the poorly understood polar night. This multi-month period of complete darkness with no primary production seems ill suited to support larval development, however, my survey of plankton communities in a fjord in Svalbard in January 2023 revealed fifty larval taxa. My samples included many recently spawned embryos, suggesting active reproduction by multiple species, feeding, and active metamorphosis and settlement. Chapter 3 investigates the drivers of dispersal and connectivity of larvae in the Fram Strait. I documented the distribution of marine invertebrate larvae in the summer, demonstrating a significant difference in larval community composition between Atlantic and Arctic water masses, as well as a relationship to phytoplankton community composition. Larvae of many coastal species were observed offshore, suggesting high connectivity and/or high wastage. I also modeled the dispersal of these taxa to understand their origins, finding non-native taxa prevalent in the region suggesting potential for invasion. Finally, I explored how post-settlement processes shape community structure. I utilized a recently developed autonomous camera tool, CATAIN (CAmera To Analyze INvertebrates), which allows observation of settlement and post-settlement mortality in remote environments for the first time. In Chapter 4, I developed and deployed CATAIN over a one-year period in Woods Hole, MA. I captured sub-daily settlement data and found a novel relationship between time of day and settlement frequency for multiple taxa. I also found that post-settlement mortality patterns varied among commonly occurring species, challenging entrenched ideas about this critical stage. In Chapter 5, I deployed CATAIN in Svalbard twice for a total of 20 months. There, I discovered high rates of mortality for the barnacle Semibalanus balanoides, and their ecology differed from the same species in temperate regions. I tied both settlement and mortality to background biotic conditions and punctuated abiotic events in situ. Overall, this work broadens knowledge of Arctic meroplankton, and the unique season of the polar night, and highlights the important processes occurring during early life stages that have lasting implications for seafloor communities.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Pooling Heuristics and Credit Risk Distribution in Conduit CMBS: Evidence from a Controlled Re-Pooling Experiment</title>
<link href="https://hdl.handle.net/1721.1/165529" rel="alternate"/>
<author>
<name>Galler, Leo</name>
</author>
<id>https://hdl.handle.net/1721.1/165529</id>
<updated>2026-04-22T03:09:21Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Pooling Heuristics and Credit Risk Distribution in Conduit CMBS: Evidence from a Controlled Re-Pooling Experiment
Galler, Leo
Conduit commercial mortgage-backed securities (CMBS) pool loans from multiple borrowers and properties and allocate cash flows and losses across tranched bonds. While prior work emphasizes how collateral characteristics and deal structure affect tranche performance, less attention has been paid to how the pooling rule itself shapes credit risk distribution across pools. This thesis studies that question in a controlled experiment that holds the loan universe fixed and varies only the pooling heuristic. Using SEC ABS-EE Exhibit 102 loan-level disclosures, the thesis builds a dataset of 389 commercial mortgage loans from ten U.S. conduit CMBS transactions issued between 2022 and 2025. The loans are reallocated into four synthetic pools under four pooling rules: Random, DSCR stratification, LTV stratification, and a Defensive rule that disperses jointly weak loans (low DSCR and high LTV). Each pool is evaluated using a stylized refinance-at-maturity loss mapping and a common three-tranche waterfall (10/20/70). Results are reported for a base case and seven stress scenarios. Three findings emerge. First, single-signal stratification reduces cross-pool dispersion relative to random assignment, with DSCR stratification achieving the lowest dispersion in every scenario. In the combined rate-plus-NOI stress, cross-pool standard deviation is 0.98 percentage points under DSCR stratification versus 2.81 under random assignment. Second, dispersion minimization and worst-pool containment are distinct objectives: the Defensive rule can improve worst-pool outcomes in jointstress states even when overall dispersion remains higher. Third, distance-to-impairment margins for mezzanine and senior tranches vary materially across heuristics, indicating that pooling design can affect tranche-level tail risk even when total collateral loss is fixed within a scenario. The results imply a practical tradeoff for issuers between dispersion control and tail containment under joint stress. For investors and credit analysts, they motivate supplementing weighted-average metrics with worst-pool diagnostics. While the framework is intentionally stylized and results are comparative rather than predictive, the findings suggest that pooling warrants explicit attention in deal structuring and credit assessment.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hydrogen Carriers: A Path Forward</title>
<link href="https://hdl.handle.net/1721.1/165528" rel="alternate"/>
<author>
<name>Biswas, Sayandeep</name>
</author>
<id>https://hdl.handle.net/1721.1/165528</id>
<updated>2026-04-22T03:03:46Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Hydrogen Carriers: A Path Forward
Biswas, Sayandeep
Hydrogen carriers offer a promising pathway to overcome the storage, transport, and infrastructure challenges that limit the large-scale deployment of molecular hydrogen. Yet, their broader adoption is hindered by conversion inefficiencies, system-integration barriers, and economic constraints. This thesis advances the practical utilization of hydrogen carriers by developing improved production pathways, demonstrating efficient hydrogen-release technologies, and evaluating their performance across multiple carrier systems. First, ammonium formate is investigated as a safe, non-flammable, and energy-dense solid hydrogen carrier. An electrochemical dehydrogenation system is demonstrated at 105 °C, where ammonium formate forms an ionic liquid. The system achieves near-quantitative Faradaic efficiencies at both electrodes and exploits coupled thermal–electrochemical driving forces, enabling modular hydrogen release with the potential for net-zero carbon emissions. Second, a comprehensive costing and emissions analysis is conducted for blue, green, and integrated blue–green ammonia production pathways. The integrated pathway uses oxygen from electrolysis to feed the autothermal reformer, eliminating the need for an air-separation unit and significantly reducing energy use and capital cost, making it a strong candidate for transitional decarbonization. Third, the thesis evaluates onboard dehydrogenation of Liquid Organic Hydrogen Carriers (LOHCs) as an alternative to centralized hydrogen release for heavy-duty trucking. This perspective identifies key reactor, catalyst, and engine-integration requirements for enabling an LOHC-fueled powertrain and shows that LOHCs charged with blue hydrogen can approach cost parity with diesel. Crucially, the final component of the thesis directly addresses these requirements. A pilot-scale benzyltoluene dehydrogenation reactor is designed, built, and experimentally validated to demonstrate the core enabling technology for the proposed powertrain. The reactor uses high-temperature exhaust gas directly to supply the endothermic heat demand and generates high-pressure hydrogen compatible with engine-based systems. The results align strongly with model predictions and confirm, at pilot scale, the technical feasibility of the onboard LOHC utilization pathway articulated in the third work. Together, these contributions advance both the scientific foundations and engineering readiness of hydrogen carriers, providing new strategies to improve conversion efficiency, reduce system costs, and enable scalable hydrogen distribution and utilization in future low-carbon energy systems.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Accelerating Autonomous Molecular Discovery through Automated Quantum Chemistry and Artificial Intelligence</title>
<link href="https://hdl.handle.net/1721.1/165527" rel="alternate"/>
<author>
<name>Wu, Haoyang (Oscar)</name>
</author>
<id>https://hdl.handle.net/1721.1/165527</id>
<updated>2026-04-22T03:04:07Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Accelerating Autonomous Molecular Discovery through Automated Quantum Chemistry and Artificial Intelligence
Wu, Haoyang (Oscar)
The grand challenges in medicine, energy, and materials science are fundamentally molecular discovery problems. However, the vastness of chemical space renders traditional experimental exploration inefficient and insufficient. Autonomous Molecular Discovery promises to accelerate this process by integrating artificial intelligence (AI), computation, and automation in chemistry, but it faces a critical trilemma: balancing accuracy, speed, and scalability. This thesis documents a systematic effort to alleviate this tension by developing and integrating novel computational frameworks that synergize the first-principles rigor of quantum mechanics (QM) with the predictive efficiency of machine learning (ML) and the scalable automation enabled by AI.&#13;
&#13;
This thesis began by focusing on developing the first ab initio kinetic models for the liquid-phase oxidative degradation of Active Pharmaceutical Ingredients. This demonstrates the feasibility and predictive power of automated mechanistic modeling in complex chemical environments, and highlights the acute need for more accurate thermochemical and kinetic data to handle real-world complexity. To address this, we developed a framework for computing systematic thermochemical corrections, and conducted an extensive benchmark of 284 model chemistries, establishing protocols to efficiently achieve chemical accuracy (~1 kcal/mol) from QM simulations. Recognizing the limitations of speed and data scarcity, we engineered physics-informed ML architectures, notably the QM-GNN, which fuses Graph Neural Networks (GNN) with QM descriptors. This approach significantly improves predictive performance and data efficiency, particularly for reaction regioselectivity in low-data regimes. Finally, to deploy these advances at scale, we designed QuantumPioneer, an automated, high-throughput platform for generating large-scale, high-fidelity QM thermo-kinetic datasets. This platform has produced an extensive database for oxidation reactions, enabling the development of novel ML models for predicting molecular stability and solvation energies. Collectively, this thesis provides a cohesive framework for accelerating molecular discovery, demonstrating that the strategic integration of first-principles simulation and data-driven intelligence can overcome key bottlenecks hindering autonomous chemical design and discovery.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tomographic Investigation of Bonding and Microstructure in Supersonic Microparticle Impacts</title>
<link href="https://hdl.handle.net/1721.1/165526" rel="alternate"/>
<author>
<name>Panova, Veera</name>
</author>
<id>https://hdl.handle.net/1721.1/165526</id>
<updated>2026-04-22T03:02:30Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Tomographic Investigation of Bonding and Microstructure in Supersonic Microparticle Impacts
Panova, Veera
The Laser Induced Particle Impact Test (LIPIT) enables particle-wise controlled launch of micron-scale metallic powders at velocities relevant to cold spray deposition. Many cold spray studies are empirical and discuss the effects of process parameters on porosity, density, and only aggregate material properties. As such, LIPIT is a powerful platform for probing the fundamental mechanisms governing high-velocity deformation and solid-state bonding. This method has been extensively used to study the subsurface features associated with bonding: the oxide layer thickness, jetting, and microstructural evolution; however, the true morphology of these features has remained largely inferred due to the limitations of conventional two-dimensional characterization.&#13;
This thesis proposes a synergistic use of the LIPIT and FIB-SEM tomography characterization to study Cu-on-Cu impacts in 3D and provide detailed quantitative insights into fundamental aspects of a coating: its bonding and microstructure. First, the true geometry of bonded interfaces in single impacts is revealed for the first time, and a mechanistic analytical model for the onset of the bonding regime is developed, enabling a prediction of optimal bonding conditions. The 3D methodology is then applied to the study of microstructure to measure and model the extent of metadynamic recrystallization which occurs immediately following the high-velocity impact due to the presence of residual heat. &#13;
The second half of the thesis discusses two-particle LIPIT stacks where individual impacts are aimed directly on top of one another. Such stacks enable careful study of the coating buildup step, characterized by particle-particle bonding and the evolution of the particle-substrate interface. Typically, isolating the impact conditions of any one particle during a coating application is impossible, and other “few-particle” experiments still lack the detail to decouple the variables. We first revisit our developed model for the onset of bonding and modify it for the new scenario to show that “peening”, the deformation of the underlying particles by the incoming high-velocity impacts typically associated with bonding enhancement in cold spray, is a two-step process. Finally, the effects of surface roughness and hardness on particle-particle adhesion are decoupled. These comprehensive 3D studies of several phenomena help inform the solid-state manufacturing process.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interpretable Approaches for Optimizing the Pulse Diagnostics and Formation for Lithium-ion Batteries</title>
<link href="https://hdl.handle.net/1721.1/165525" rel="alternate"/>
<author>
<name>Rhyu, Jinwook</name>
</author>
<id>https://hdl.handle.net/1721.1/165525</id>
<updated>2026-04-22T03:03:39Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Interpretable Approaches for Optimizing the Pulse Diagnostics and Formation for Lithium-ion Batteries
Rhyu, Jinwook
Lithium-ion Batteries (LiBs) are widely used in electronic devices and energy storage systems owing to their high energy density, long lifespan, and low cost. To further improve their performance and safety, we focus on optimizing two necessary yet time-consuming LiB applications: pulse diagnostics that enable degradation mechanism-level diagnosis, and the formation step that can greatly impact the battery performance.&#13;
Interpretability plays a key role in the optimization scheme. Interpretability allows us to break down result-oriented, time-consuming objective functions into tractable problems, enhances the extrapolation capability of the optimization solver, and determines the depth of physical insights we gain from the optimization scheme. Thus, we aim for interpretable approaches for optimizing the pulse diagnostics and formation step.&#13;
First, we optimize voltage-pulse diagnostics using the fitness model, a mechanistic model that describes the behavior of degraded LiBs under voltage pulses, as a source of interpretability. The optimal set of diagnostic protocols is found from the Pareto front plot with two objective functions, each representing the practical identifiability of the degradation parameters and the total diagnostic time. We discuss on why film resistance is challenging to identify, and how to improve the practical identifiability using redundant voltage pulses.&#13;
Next, we demonstrate how the formation protocols can be optimized using the systematic feature engineering framework as the source of interpretability. Using two features designed from our framework, we achieve reliable evaluation of new formation protocols during the formation step, with a &lt; 10% cycle life prediction error. Combined with the domain knowledge, our feature engineering work guides the development of the mechanistic distributed-resistance model, providing physical meaning to the data-driven features.&#13;
Finally, we present a reliable classification method of full-cell Acoustic Emission (AE) signals based on their acoustic sources, which is the first step for utilizing AEs for optimizing the formation step. AEs capture microscopic mechanical phenomena, such as gas generation or particle fracture. Using the simplest convolutional neural network structure for interpretability, we observe a possible transferability of the classifier from half-cell to full-cell AEs, and across similar cell chemistries.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Noncovalent PROTAC Antibody Drug Conjugates</title>
<link href="https://hdl.handle.net/1721.1/165524" rel="alternate"/>
<author>
<name>Krum, David</name>
</author>
<id>https://hdl.handle.net/1721.1/165524</id>
<updated>2026-04-22T03:02:49Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Noncovalent PROTAC Antibody Drug Conjugates
Krum, David
Proteolysis Targeting Chimeras (PROTACs) are a new class of heterobifunctional drugs that induce proximity between an E3 ligase and a given protein of interest (POI), causing the POI to be ubiquitinated and targeted for proteasomal degradation. While the event-driven, irreversible pharmacodynamics of PROTACs offer advantages over traditional occupancy-driven small molecule inhibitors, their large molecular weight and existence outside of Lipinski chemical space give rise to poor pharmacokinetic behavior. To ameliorate these issues, PROTACs can be conjugated to anti-tumor antibodies to improve circulation time in vivo and promote accumulation of the drug in the tumor. The conjugation chemistry and purification of antibody drug conjugates is time and labor intensive, and we therefore propose a facile, noncovalent, “plug-and-play” conjugation strategy whereby an anti-PROTAC antibody fragment is included in a bispecific antibody. In this work, we develop a pharmacokinetic model describing the kinetics of reversible, noncovalent antibody drug conjugates. We use yeast surface display to develop high-affinity antibodies that bind to the most common small molecules employed in Proteolysis Targeting Chimeras (PROTACs) guided by observations from our modelling. We test the binding and delivery kinetics of these non-covalent antibody drug conjugates in vitro and demonstrate that that the antibodies induce internalization of the drug, leading to target protein degradation and cytotoxicity in murine and human cell lines. Finally, we investigate the in vivo pharmacokinetics and anti-tumor efficacy of various PROTAC drugs, demonstrating an improvement relative to drugs without conjugation to an antibody.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interpolation Methods in Random Optimization and Deep Learning</title>
<link href="https://hdl.handle.net/1721.1/165523" rel="alternate"/>
<author>
<name>El Cheairi, Houssam</name>
</author>
<id>https://hdl.handle.net/1721.1/165523</id>
<updated>2026-04-22T03:03:07Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Interpolation Methods in Random Optimization and Deep Learning
El Cheairi, Houssam
This thesis studies three problems in high-dimensional probability and statistics: (1) the densest subgraph problem in dense random graphs, where the goal is to estimate and recover the subgraph with the highest edge density; (2) the maximum cut problem on sparse random graphs, where the goal is to find a partition of the graph’s vertices that maximizes the number of edges between the two sets; and (3) the theoretical feasibility of compression for multilayer perceptrons via pruning and quantization. In Chapter 2, we derive new asymptotics for the density of densest k-subgraphs in random graphs in the sublinear regime k = n^α , α ∈ (0, 1). Our derivation is specified for both the dense Erdös-Rényi model and Gaussian-weighted random graphs. We also show using the interpolation method that the densest subgraph density is distributionally invariant for sub-Gaussian distributions, thus establishing universality. We leverage the asymptotics in the dense Erdös-Rényi setting to study the algorithmic landscape of the Hidden Clique model, and show that it exhibits a form of the Overlap Gap Property (OGP), which constitutes an algorithmic barrier for a family of Markov chain Monte Carlo (MCMC) algorithms. In Chapter 3, we study the performance of a class of Low-Degree Polynomial (LDP) algorithms for the maximum cut problem (Max-Cut) on random Erdös-Rényi graphs. We show that tree-structured LDPs based on the Approximate Message Passing (AMP) framework are near-optimal for finding ground states of the Sherrington-Kirkpatrick (SK) model. Then, using an interpolation argument, we show optimality of the same algorithms on sparse random graphs. This effectively proves algorithmic universality for this class of LDPs. In Chapter 4, we provide a theoretical justification for the post-training compression of wide multilayer perceptrons (MLPs). By analyzing a randomized greedy algorithm akin to Optimal Brain Damage (OBD) via an interpolation method, we unify the treatment of unstructured compression (pruning and quantization) and structured pruning. Our results rigorously establish the existence of sparse and quantized subnetworks that maintain competitive performance. In particular, we show that pruning at linear sparsities is achievable for sufficiently wide MLPs. The derived bounds, which are free of data assumptions, formally showcase a tradeoff between an MLP’s width and its compressibility
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Predictive Methods and Datasets for Thermodynamic and Kinetic Modeling of Ionic Solutes</title>
<link href="https://hdl.handle.net/1721.1/165522" rel="alternate"/>
<author>
<name>Zheng, Jonathan</name>
</author>
<id>https://hdl.handle.net/1721.1/165522</id>
<updated>2026-04-22T03:06:44Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Predictive Methods and Datasets for Thermodynamic and Kinetic Modeling of Ionic Solutes
Zheng, Jonathan
The ability to quantitatively describe ionization phenomena is essential to designing medicines, developing novel materials, and modeling the time-evolution of many relevant liquid-phase chemical systems. In liquid phase chemistry, acid-base phenomena result in the formation of solvated ions. Biochemical reactions, synthesis steps, and pharmacological mechanisms-of-action also often involve charged reactants and products. A key property is the “elusive” solvation free energy of the ion, which itself is not directly measurable but for many relevant ions is tied to other observable properties such as the acid dissociation constant (pKₐ). However, modeling approaches tend to perform poorly for predicting solvation free energies of ionic solutes. Existing solvation models often have average errors exceeding 3 kcal mol-1. Literature data are also scarce, precluding the parameterization of physics-based solvation models, development of data-driven methods, and benchmarking of such techniques for ionic solutes. &#13;
The work in this thesis seeks to address these issues of data scarcity and modeling. The work can be divided into three components:&#13;
• Acid-base phenomena. First, the data curation aspects of pKa are discussed. Existing inconsistencies in data usage and terminology have confused the literature, and are clarified herein. Curated datasets for aqueous and non-aqueous pKa values, based on IUPAC collections of data, are also presented here. However, even with these datasets, many solvent systems still do not have much data (several, for instance, have less than 100 datapoints). To address this data scarcity issue, a method for generating high-quality pKa predictions in non-aqueous solvents is presented and benchmarked, and then utilized to create “synthetic” data for roughly 3,000 acids in 29 solvents (a total of nearly 80,000 data points).&#13;
• Thermodynamics of ionic solutes. As aforementioned, pKₐ, along with other measurable thermodynamic properties, can be linked back to the ions’ solvation energies. This section describes how this thermodynamic relationship is used to generate a new database of hydration free energies for ions, which can then be used to develop simple corrections to existing solvation models to reduce error by roughly 60%. This method is expanded to a large scale, used to generate nearly 6,000 values across 8 solvents. For comparison, prior to these efforts, the largest such database included only 300 datapoints. Finally, a machine learning model was trained to predict solvation free energies (as well as the substituent properties), the first machine learning model to our knowledge that can predict anionic solvation energies and gas-phase acidities.&#13;
• Kinetics. The methods of the previous chapters are expanded to reactions involving zwitterions, radicals, and singly-charged anions (S_N 2 reactions). The H-abstraction reaction is examined through a dataset of approximately 100 million solvation free energies previously computed in our group. The dataset consists mostly of uncharged closed-shell and open-shell solutes, but contains some zwitterions as well. The error of the calculation method is examined, with a focus on the barrier heights of the reactions. The conformational effects of the zwitterions are examined, showing the surprisingly high sensitivity of the solvation energies to the optimized geometries of such solutes. &#13;
Next, S_N 2 reactions are examined. A dataset of S_N 2 rate data was digitized and provided, and used to benchmark a quantum-chemical approach to prediction relative rate coefficients. The method shows good predictive quality, demonstrating the usefulness of solvation models for relative properties despite their very high errors for absolute energies. &#13;
In sum, these efforts combine cheminformatics, quantum chemistry, data science, and machine learning to enable quicker and more accurate prediction of properties related to acid-base and ionization phenomena.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Identifying and Managing Risks in Mezzanine Financing for Real Estate: Towards Optimized Risk-Adjusted Investment Decisions</title>
<link href="https://hdl.handle.net/1721.1/165521" rel="alternate"/>
<author>
<name>Park, Hazel Sanghi</name>
</author>
<id>https://hdl.handle.net/1721.1/165521</id>
<updated>2026-04-22T03:10:25Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Identifying and Managing Risks in Mezzanine Financing for Real Estate: Towards Optimized Risk-Adjusted Investment Decisions
Park, Hazel Sanghi
The evolution of capital structure in U.S. commercial real estate has been shaped by historical and institutional events, including financial crises, regulatory reforms, and shifts in capital market participation. Within this context, the mezzanine tranche has been the most adaptive element of the capital stack, continually reshaping itself to meet shifting market conditions, bridge funding shortfalls, and broaden the range of capital providers. At the same time, this evolution has introduced new type of risks and increased the need for intercreditor alignment and more structured agreement terms. This thesis identifies the inherent risks associated with mezzanine lender’s position in the capital stack and its underlying collateral structure. It further examines the contractual and structural mechanisms that have been developed to protect investor rights and mitigate these risks. Drawing on loan documents, case studies, and professional interviews, the thesis illustrates how these mechanisms operate, particularly in distressed scenarios, and discusses their practical implications. Specifically, it examines (1) the historical and institutional drivers and outcomes of market evolution including various capital stack instruments; (2) the contractual features of mezzanine loans through text-based analysis of loan agreements; (3) lessons from defaults or stress scenarios in selected case studies; and (4) the contractual mechanisms designed to protect investors and mitigate risk, followed by the development of a risk-protection matrix to support the systematic assessment of risk–return trade-offs. By integrating historical analysis, case studies, and contract-level evaluation, this research aims to provide a framework for identifying underlying risks in investment opportunities and supporting sound investment decision-making through the assessment of reasonable risk-adjusted returns.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>From Feasibility to Inventory: A Predictive Framework for Multifamily Supply Analysis</title>
<link href="https://hdl.handle.net/1721.1/165520" rel="alternate"/>
<author>
<name>Muro Moleiro, Luis Fernando</name>
</author>
<id>https://hdl.handle.net/1721.1/165520</id>
<updated>2026-04-22T03:09:55Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">From Feasibility to Inventory: A Predictive Framework for Multifamily Supply Analysis
Muro Moleiro, Luis Fernando
This thesis introduces a predictive framework for multifamily supply analysis by reversing the conventional sequence, moving from feasibility to inventory rather than inventory to feasibility. Traditional supply metrics rely heavily on delivered units, active pipeline counts, and historical absorption, all of which describe supply after developers have already made their decision to build. This backward-looking approach obscures the underlying conditions that actually determine whether new inventory will be built. This thesis proposes a model that begins instead with the economics of development feasibility, incorporating construction costs, achievable rents, capitalization rates, and the spread from YOC to Cap Rates that developers typically require for new projects to proceed. By estimating the rent levels necessary for a hypothetical development to achieve this spread— and comparing those requirements to current and projected market rents—the framework identifies where new supply is financially viable, where it is marginal, and where it is economically impossible. By anchoring supply forecasting in the feasibility thresholds that guide developer behavior, this approach transforms supply-side analysis into a forward-looking tool capable of predicting future inventory expansion with greater accuracy and insight than pipeline data alone.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Long Term Asset Management Planning for Housing Security and Climate Stability: A Case Study of Decarbonization Roadmapping for Allston Brighton Community Development Corporation’s Affordable Multifamily Rental Housing Portfolio</title>
<link href="https://hdl.handle.net/1721.1/165519" rel="alternate"/>
<author>
<name>Blacklow, Arielle</name>
</author>
<id>https://hdl.handle.net/1721.1/165519</id>
<updated>2026-04-22T03:08:25Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Long Term Asset Management Planning for Housing Security and Climate Stability: A Case Study of Decarbonization Roadmapping for Allston Brighton Community Development Corporation’s Affordable Multifamily Rental Housing Portfolio
Blacklow, Arielle
a Boston-based multifamily affordable housing provider pursuing net-zero emissions by 2040, this project develops a mechanism and framework for portfolio decarbonization roadmapping of existing residential housing assets. The research links decarbonization planning to equitable long-term asset management by aligning efforts of emission reductions with housing affordability, capital needs, financial capacity, climate adaptation, accessibility compliance, and resident engagement. Grounded in real-world constraints faced by mission-driven affordable housing organizations, the study draws on practitioner interviews, scenario planning, multi-criteria decision-making, and ABCDC’s experience with recent retrofit projects to develop actionable planning tools. The research produces adaptable property-level decarbonization planning dashboards that inform a dynamic portfolio-wide energy projection and tracking dashboard, providing user-friendly, datadriven mechanisms to support organizational decision-making. Through iterative scenario analysis, the thesis explores a combination of Zero over Time (ZOT) and Simultaneous Energy Upgrade (SEU) strategies for ABCDC’s portfolio in order to balance energy, regulatory, cost, and logistical factors. The research also introduces a prioritization mechanism for portfolios facing resource constraints and develops resident engagement frameworks to promote equitable and participatory decarbonization planning processes. The thesis contributes a practical bridge between technical decarbonization modeling and long-term asset management planning while identifying key implementation challenges, including funding constraints, data limitations, and knowledge transmission barriers. Although reliant on a single case study, the framework developed through this thesis offers transferable insights for affordable housing providers seeking to disrupt the reinforcing cycle between housing insecurity and climate instability.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Kinetic Manipulation of Self-Assembling Systems for Scalable Nanomaterials Synthesis</title>
<link href="https://hdl.handle.net/1721.1/165518" rel="alternate"/>
<author>
<name>Ye, Matthew Dan</name>
</author>
<id>https://hdl.handle.net/1721.1/165518</id>
<updated>2026-04-22T03:02:32Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Kinetic Manipulation of Self-Assembling Systems for Scalable Nanomaterials Synthesis
Ye, Matthew Dan
Nanoparticle assembly is an approach to materials development in which macroscopic materials are constructed through the autonomous self-organization of nanoparticle-based building blocks. Since individual nanoparticles can be synthesized with tailored size, shape, composition, and chemical functionality, this synthetic strategy offers extremely fine control over material structure at the nanometer length scale. However, because an enormous quantity of these building blocks is typically required to produce macroscopic materials, the scalability of this approach has remained a significant obstacle to large scale production. In this dissertation, I demonstrate that polymer-grafted nanoparticles (PGNPs) can be used to not only address these scalability challenges, but also generate novel microscale and nanoscale architectures that are otherwise difficult to realize through bulk processing. First, I show that in concentrated colloidal dispersions of PGNPs, adjusting the solvent quality enables sufficiently precise control over polymer-polymer interactions to yield ordered nanoparticle arrays on much shorter timescales than previously reported assembly techniques. This facile and rapid assembly methodology is highly desirable because it uses generic polymer ligands that are amenable to large scale production, can be performed without specialized equipment, and is easily adapted to particles of arbitrary composition. Second, I show that by using polymer ligands end-modified with supramolecular binding moieties, nanoparticles can be assembled into previously unobserved nonequilibrium crystal habits. Interestingly, the prevalence of these kinetically-driven morphologies follow exactly the opposite trend of what would be expected in conventional crystal growth, revealing new mechanistic pathways in the morphogenesis of crystals derived from colloidal constituents. Finally, I show that ordered PGNP arrays can be thermally processed to induce interparticle sintering, resulting in interconnected porous networks. This allows nanoparticle assembly to serve as a versatile route to mesoporous metals, ceramics, and even heterostructures with multiple components, thus providing a powerful platform for generating catalytic materials with tunable surface area and activity. Collectively, these findings reveal that kinetic control underpins the practical scalability and structural diversity of PGNP-based materials and establishes nanoparticle assembly as a kinetically tunable platform for engineering complex nanoscale architectures.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Seasonal predictability and interannual variability in coastal planktonic communities</title>
<link href="https://hdl.handle.net/1721.1/165517" rel="alternate"/>
<author>
<name>Santos, Miraflor Padilla</name>
</author>
<id>https://hdl.handle.net/1721.1/165517</id>
<updated>2026-04-22T03:03:19Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Seasonal predictability and interannual variability in coastal planktonic communities
Santos, Miraflor Padilla
Understanding the predictability and variability of coastal planktonic communities is essential for forecasting ecosystem responses to environmental change and managing marine resources. This thesis examines seasonal predictability, temperature-phenology relationships, and interannual bloom variability in coastal plankton using two decades of high-resolution observations from the Martha's Vineyard Coastal Observatory (MVCO). Through automated flow cytometry, we analyzed community dynamics across multiple taxa representing diverse functional groups and seasonal strategies.&#13;
The first component investigates seasonal predictability patterns across the planktonic community using wavelet analysis, novel cyclicity indices, and lag-adjusted seasonal models. Wavelet analysis reveals that annual periodicity dominates temporal variability, with $71\%$ of taxa exhibiting consistent annual cycles throughout the observation period. However, substantial variation exists in predictability among taxa, with some species serving as reliable seasonal anchors while others display more erratic dynamics. Critically, we demonstrate that shifts in bloom amplitude contribute more to interannual variability than changes in seasonal timing, and that individual taxa often exhibit higher predictability than their aggregated functional groups, challenging common modeling approaches that rely on broad taxonomic categories.&#13;
The second component examines the mechanistic basis for seasonal predictability by quantifying relationships between temperature timing and bloom phenology. Using year-day crossing models, we assess how temperature threshold transitions predict bloom onset and decline across four representative taxa: \textit{Synechococcus} (spring), \textit{Pseudo-nitzschia }(summer), \textit{Akashiwo} (fall), and \textit{Ditylum brightwellii} (winter). Results show that bloom onset timing is more tightly coupled to temperature transitions than decline timing, with positive correlations indicating that earlier warming leads to earlier bloom initiation. This onset-decline asymmetry suggests temperature functions as a reliable seasonal cue for bloom initiation, while termination depends on more complex, multi-factorial processes including nutrient depletion, grazing pressure, and biological interactions.&#13;
The third component characterizes interannual variability in bloom dynamics through episode-based analyses of frequency, integrated intensity, peak magnitude, and timing. Community-scale patterns reveal distinct ecological strategies for packaging biomass through time, with some taxa favoring infrequent but intense episodes while others maintain consistent moderate-level activity. Temporal trends in bloom characteristics differ markedly among seasonal taxa, with spring bloomers showing declining magnitudes, summer diatoms exhibiting increasing peak concentrations, and winter taxa displaying variable intensity patterns. Event-based temperature-timing analyses demonstrate that only a subset of strongly seasonal taxa exhibit significant phenological coupling, with most community members showing weak or inconsistent temperature relationships when examined at the episode level.&#13;
These findings have important implications for understanding and predicting coastal ecosystem dynamics. The dominance of amplitude over timing variability suggests that forecasting efforts should prioritize predicting bloom magnitude rather than precise timing. The stronger temperature control on onset versus decline indicates that warming-driven phenological advances are likely, but termination timing will remain more stochastic. The superior predictability of individual taxa compared to functional groups argues for maintaining taxonomic resolution in monitoring and modeling efforts. Together, these results provide a comprehensive framework for understanding how coastal plankton communities respond to environmental variability and change, informing both fundamental ecological theory and practical forecasting applications for marine ecosystem management.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>AI-driven Exploration of Topological Quantum Materials</title>
<link href="https://hdl.handle.net/1721.1/165516" rel="alternate"/>
<author>
<name>Cheng, Mouyang</name>
</author>
<id>https://hdl.handle.net/1721.1/165516</id>
<updated>2026-04-22T03:07:14Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">AI-driven Exploration of Topological Quantum Materials
Cheng, Mouyang
Topological quantum materials have emerged as promising platforms for next-generation technologies in energy, computing, and information processing. However, their exploration faces two major challenges: reliably detecting exotic topological states from experimental signals and identifying materials that balance quantum functionality with economic and environmental sustainability. In this thesis, I develop artificial intelligence (AI)-driven approaches to address both fronts. First, I introduce a machine learning framework that distinguishes Majorana zero modes (MZMs) from spurious zero bias peaks in scanning tunneling spectroscopy, integrating quantum transport simulations, topological data analysis, and deep learning to achieve robust classification even in noisy experimental regimes. Second, I establish a data-driven methodology to screen over 16,000 topological materials by combining thermodynamic stability, supply-chain resilience, toxicity, and environmental footprint with the quantum weight, an AI-predicted metric quantifying electronic quantumness. The analysis uncovers a striking correlation between enhanced quantum behavior and increased sustainability costs, and identifies a small set of viable candidates that optimize both. Together, these efforts demonstrate how AI can bridge the gap between theoretical prediction, experimental verification, and sustainable design of topological quantum materials, charting a pathway toward their scalable deployment in future quantum and energy technologies.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Enhancing the Mechanical Recycling of Plastics</title>
<link href="https://hdl.handle.net/1721.1/165515" rel="alternate"/>
<author>
<name>Hocken, Alexis</name>
</author>
<id>https://hdl.handle.net/1721.1/165515</id>
<updated>2026-04-22T03:02:21Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Enhancing the Mechanical Recycling of Plastics
Hocken, Alexis
The plastic waste problem has become a serious environmental issue as over 400 million tons of plastic waste are generated annually. Unfortunately, plastic production is only continuing to rise. Most plastic waste is landfilled, mismanaged, or accidentally released into the environment, while only a small portion is recycled (about 9% in the US). This underscores the need to develop more sophisticated technology to maximize plastics recovery and minimize unnecessary use of virgin petroleum feedstocks. Unrecovered plastics represent a missed opportunity for economic and environmental benefit. This thesis explores potential technological schemes that could be deployed in material recovery facilities (MRFs) to enhance post-consumer plastic recovery.&#13;
The first two parts of this work probe a cyclone separation process to improve retention of small format plastics within MRFs. By leveraging the density difference between glass and plastic, the plastics can be sorted out with higher than 90% efficiency. Additionally, environmental and technoeconomic feasibility studies demonstrated that the introduction of the cyclone separation process would be a beneficial addition to MRF operations. Further experiments explored the limits of this technology by investigating the impact of feed shape, size, infill, and aspect ratio on separation performance. The experiments were further explained by computational fluid dynamics (CFD) simulations and modeling.&#13;
The last two parts of this thesis study how machine learning could be employed within plastics sorting. An expansion of optical sorting technology to support polyester bioplastics was investigated using reflectance spectroscopy and machine learning techniques. Random forest and k-nearest neighbor models were trained on a spectral dataset and demonstrated classification accuracies of 92% and higher. Additional probing into sample attributes, feature importance, and tolerance to external noise was performed. Finally, an alternate sorting scheme in recycling based on sorting by brand rather than plastic type was demonstrated by leveraging AI. It was shown that this new sorting technology could be used to implement an economically-viable extended producer responsibility (EPR) scheme that would better align the incentives of all participants in the plastics system in order to improve recycling rates.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Supercoiling as a regulator: the role of biophysical feedback in transcription and chromatin dynamics</title>
<link href="https://hdl.handle.net/1721.1/165514" rel="alternate"/>
<author>
<name>Johnstone, Christopher P.</name>
</author>
<id>https://hdl.handle.net/1721.1/165514</id>
<updated>2026-04-22T03:02:12Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Supercoiling as a regulator: the role of biophysical feedback in transcription and chromatin dynamics
Johnstone, Christopher P.
Transcription induces a wave of DNA supercoiling, altering the binding affinity of RNA polymerases and reshaping the biochemical landscape of gene regulation. Instead of transcription being a simply biochemical progress acting over a static energy landscape, this supercoiling diffuses outward, dynamically reshaping the regulation of proximal genes and forming a complex feedback loop. While supercoiling is well studied as a biophysics problem, a theoretical framework is needed to integrate biophysical regulation with biochemical transcriptional regulation. To investigate the role of supercoiling-mediated feedback within multi-gene systems, we model transcriptional regulation—and especially transcriptional initiation—under the influence of supercoiling-mediated polymerase dynamics, allowing us to identify patterns of expression that result from physical inter-gene coupling. Gene syntax—–the relative ordering and orientation of genes—–defines the expression profiles, variance, burst dynamics, and inter-gene correlation of two-gene systems. In turn, this can enhance or weaken biochemical regulation. Together, the modeling results suggest that supercoiling couples behavior between neighboring genes, providing a regulatory mechanism that tunes transcriptional variance in engineered gene networks and explains the behavior of co-localized native circuits.&#13;
&#13;
With these predictions in hand, we use integrated reporter circuits in human cells and demonstrate the reciprocal effects of transcription and DNA supercoiling: supercoiling-mediated biophysical feedback. This feedback effect regulates expression of adjacent genes in a syntaxspecific manner, as predicted. Using Region Capture Micro-C and GapRUN, two recently published genomics techniques, we measure induction-dependent formation of supercoiled plectonemes and syntax-specific chromatin structures in human induced pluripotent stem cells. This first demonstration of supercoiling measurements in synthetic, integrated circuits in mammalian cells gives us unprecedented detail into the regulation of two-gene circuits. Applying syntax as a design parameter, we built compact gene circuits, tuning the mean, variance, and stoichiometries of expression across diverse delivery methods and cell types and improve both the titer of antibody production circuits and the efficacy of all-in-one inducible lentiviral circuits. Integrating supercoiling-mediated feedback into models of gene regulation will expand our understanding of native systems and enhance the design of synthetic gene circuits.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Genetic Modifications and Other Tools for the Enhancement and Optimization of Recombinant Protein Manufacturing in Komagataella phaffii</title>
<link href="https://hdl.handle.net/1721.1/165513" rel="alternate"/>
<author>
<name>Ford, Hayley</name>
</author>
<id>https://hdl.handle.net/1721.1/165513</id>
<updated>2026-04-22T03:03:58Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Genetic Modifications and Other Tools for the Enhancement and Optimization of Recombinant Protein Manufacturing in Komagataella phaffii
Ford, Hayley
The global demand for high-quality recombinant proteins is rapidly growing. Meeting this demand while sustaining supply chains and improving worldwide accessibility requires scalable, cost-efficient production platforms. Komagataella phaffii (K. phaffii) is a promising host for addressing these challenges and has been used to produce a wide range of recombinant proteins. However, for complex molecules such as monoclonal antibodies (mAbs), space–time yields in K. phaffii remain below those of traditional hosts. This thesis presents several studies that narrowed this productivity gap by enhancing the volumetric productivity of K. phaffii through host-cell engineering and novel reactor operating strategies.&#13;
First, we explored how disrupting non-essential genes affected the production of recombinant proteins in K. phaffii. Using CRISPR-Cas9, we characterized the essentiality of every gene in the K. phaffii genome. We used these results in conjunction with biological hypotheses to identify targets for genetic engineering. We disrupted 29 genes associated with secretion pathways and observed significant improvements in mAb production (up to 9x) for 19 of those strains. The best performing strains were evaluated across multiple scales, including fed-batch fermentation. We also assessed the effectiveness of combining the most beneficial genetic engineering changes. &#13;
We next investigated whether transcriptomic data could be used in conjunction with essentiality to identify promising targets for genetic engineering. We found no correlation between gene expression level and the effectiveness of gene disruptions; however, our screen did uncover five genetic edits that significantly improved mAb production in K. phaffii.&#13;
Beyond genetic engineering of the host organism, genomic integration significantly impacts volumetric productivity – specifically, the number of copies of a heterologous transgene encoding a recombinant protein significantly influences yield and genetic stability. Current methods for determining the copy number of recombinant transgenes have limited quantitative resolution for large constructs or constructs with high copy numbers. We developed a pipeline that uses long-read sequencing data to determine transgene copy number for large, complex, and repetitive integrants. This pipeline can be used to characterize existing strains, evaluate the impact of copy number on productivity, support optimization of process conditions, inform strain engineering decisions, and minimize confounding variables in comparative studies. &#13;
We also explored novel reactor operating conditions for engineered strains of K. phaffii. We developed a stepped perfusion fermentation method that allowed for testing of up to 11 different operating conditions within a single reactor run. We used this method to identify promising process parameters for the commercial production of NIST mAb in perfusion fermentation. We also developed a novel feeding strategy for fed-batch fermentation of trastuzumab-producing strains.&#13;
Closing the productivity gap between K. phaffii and traditional manufacturing hosts could unlock considerable economic and operational advantages for agile and flexible manufacturing. This thesis introduces specific genetic engineering changes and operational fermentation modes that significantly improved the productivity of several proteins of interest in K. phaffii. The strategies and tools developed and presented here provide a foundation for continued engineering of this organism to achieve target productivities and can be broadly applied to enhance the production of recombinant proteins across diverse microbial systems.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interpretable Learning and Control of Physical Dynamical Systems</title>
<link href="https://hdl.handle.net/1721.1/165512" rel="alternate"/>
<author>
<name>Cohen, Alexander Ethan</name>
</author>
<id>https://hdl.handle.net/1721.1/165512</id>
<updated>2026-04-22T03:02:17Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Interpretable Learning and Control of Physical Dynamical Systems
Cohen, Alexander Ethan
The laws of physics are encoded as differential equations that describe how systems evolve in time and space. These equations are traditionally derived by analyzing fundamental physical interactions. However, in many settings the observed phenomenon is too complex or high-dimensional to yield tractable differential equation models, resulting in partially or completely unknown governing equations. Advances in machine learning have yielded powerful predictive and generative models for complex and high-dimensional systems, but applications of these techniques to scientific problems often lack interpretability and are prone to violating physical constraints, especially in data-limited settings. Hybrid methods that integrate physical structure with data-driven analyses have emerged as a promising approach for accurate, interpretable modeling of complex physical systems. This thesis develops frameworks for learning interpretable dynamical models by combining first-principles structure with modern data-driven and machine learning methods. The resulting models aim to be accurate, computationally efficient, interpretable, and useful for prediction, control, and scientific understanding.&#13;
&#13;
The first part of this thesis develops tools for modeling biophysical dynamics, with a focus on animal motion, behavior, and neural activity. These systems are challenging to model due to their high dimensionality, nonlinearities, and limited availability of comprehensive datasets. To address these challenges, this thesis introduces spectral mode representations as a low-dimensional and interpretable representation space for biological dynamics. While the form of the models for these biological systems is unknown, general physical symmetries and biological constraints are known. Accordingly, methods for incorporating physical constraints into dynamical models in mode space are developed and applied to animals whose dynamics can be effectively described by centerline motion. For linear dynamics, the constrained models are Hermitian, and this structure is utilized to compare dynamics across species and behavioral states. The framework is then extended to nonlinear, stochastic dynamics and neural control to build generative models of neural activity, motion, and behavior. Learning is facilitated by decomposing the vector field via a Helmholtz decomposition into gradient and divergence-free components, which are optimized separately using score matching, diffusion models, and generalized Hamiltonian dynamics. Coupling the dynamical system to neural activity enables prediction of motion from neural signals and the design of neural control strategies for steering motion. Applied to C. elegans, this model reproduces posture statistics across behavioral states, captures stereotyped dynamics, and links neural activity to interpretable modes of motion.&#13;
&#13;
The second part of this thesis applies similar hybrid techniques to complex materials described by nonlinear partial differential equations (PDEs). These systems are challenging to model because key parameters and functions are often unknown and the equations are computationally intensive to simulate and optimize. To address these challenges, an open-source, GPU-accelerated framework is developed for optimization and control of phase-separating and pattern-forming PDEs, enabling efficient gradient-based optimization of arbitrary PDE parameters in complex domains. This tool is then leveraged to solve representative, experimentally relevant learning and control problems in energy and quantum materials, illustrating how physically structured optimization can be used to learn models for and control pattern formation. Building on this framework, this thesis develops methods for learning continuum models from molecular dynamics simulations of phase separation. Starting from particle-based simulations of a phase-separating Lennard–Jones fluid, coarse-grained continuum fields are constructed via diffusion-like smoothing operators and effective dynamical equations are learned in this continuum space. The coarse-graining procedure is linked to diffusion models from machine learning by demonstrating that the learned dynamics correspond to score functions of the coarse-grained distributions.&#13;
&#13;
Finally, this thesis demonstrates the broader applicability of these ideas through several collaborative projects, including models for controlling indoor airborne disease transmission and for learning mosquito behavioral responses to multi-sensory stimuli.&#13;
&#13;
Across these domains, the thesis advances a common perspective: integrating physical structure with data-driven models yields dynamical systems that are both interpretable and useful for prediction and control problems in many areas of science and engineering.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>From Real Estate to Hybrid (Real Estate + Tech) How Public Markets Reprice Data Center REITs</title>
<link href="https://hdl.handle.net/1721.1/165511" rel="alternate"/>
<author>
<name>Oh, Andrew</name>
</author>
<id>https://hdl.handle.net/1721.1/165511</id>
<updated>2026-04-22T03:07:35Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">From Real Estate to Hybrid (Real Estate + Tech) How Public Markets Reprice Data Center REITs
Oh, Andrew
This thesis investigates the evolving pricing identity of U.S. listed data center REITs from 2015 to 2025. Data centers occupy an ambiguous position in public markets: they are structured as real estate investment trusts yet increasingly perceived as technology infrastructure. This study asks whether public market pricing reflects this ambiguity and, if so, how the pricing relationship has changed over time. Using weekly return data for a two-constituent data center REIT basket (Equinix and Digital Realty), an equal-weight REIT benchmark excluding data centers, and two technology equity ETFs (XLK and SMH), the analysis employs three complementary methods: 52-week rolling correlations, regime-level two-factor identity regressions with Newey-West standard errors, and rolling two-factor betas. The sample is partitioned into four regimes aligned with macroeconomic conditions: pre-COVID baseline (2015–2019), COVID shock and aftermath (2020–2021), rate-hike stress (2022–2023), and post-hike period (2024–2025). The findings reveal a pronounced identity shift. In the baseline regime, data center REITs exhibited strong REIT alignment and near-zero technology exposure, consistent with traditional real estate pricing. During 2020–2021, REIT alignment collapsed while technology alignment emerged under the broad tech proxy, though not under semiconductors. Post2022, a hybrid identity crystallized: both REIT and technology coefficients became positive and statistically significant across proxy specifications. Rolling estimates confirm that this hybrid structure is persistent rather than episodic. The results contribute to understanding how public markets classify assets with hybrid characteristics. The shift from REIT-only to hybrid pricing identity suggests that investors increasingly view data center REITs through a blended real estate and technology lens, with implications for benchmarking, portfolio construction, and the organizational boundary between operating platforms and property ownership. The pricing identity of listed data center REITs has evolved from predominantly real estate to a durable hybrid of real estate and technology.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>When Negotiation Hurts and When It Doesn’t: Relational&#13;
Consequences of Negotiation in Rental Markets</title>
<link href="https://hdl.handle.net/1721.1/165510" rel="alternate"/>
<author>
<name>Wang, Laura Changlan</name>
</author>
<id>https://hdl.handle.net/1721.1/165510</id>
<updated>2026-04-22T03:07:40Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">When Negotiation Hurts and When It Doesn’t: Relational&#13;
Consequences of Negotiation in Rental Markets
Wang, Laura Changlan
Negotiation is widely encouraged as a means of improving economic outcomes, yet concerns persist that negotiating may undermine interpersonal relationships. Integrating research on negotiation, relationships, and social norms, I argue that the relational consequences of negotiation depend on whether negotiating aligns with contextual norms. Using 19-month longitudinal field data from the U.S. rental real estate market (N = 2,678 tenants), I examined how the occurrence of a negotiation predicts tenants’ subjective value during lease signing and downstream behavioral outcomes. Tenants who negotiated during the lease-signing process reported lower subjective value than those who did not, but only when negotiation was perceived as violating prevailing norms. Specifically, the perception that the landlord had communicated lease terms were negotiable—particularly the perception that this was communicated publicly— and perceived market conditions favorable to tenants attenuated or eliminated these negative associations. Lower subjective value, in turn, predicted shorter planned length of stay, which subsequently predicted a shorter actual tenancy one year later. These findings show that negotiation is not inherently harmful to relationships; rather, its interpersonal consequences hinge on normative context. By identifying social norms as a key boundary condition, this research advances understanding of when negotiation undermines relationships and how early interactions shape long-term outcomes.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sharpness-Aware Minimization (SAM) Improves Classification Accuracy of Bacterial Raman Spectral Data Enabling Portable Diagnostics</title>
<link href="https://hdl.handle.net/1721.1/165509" rel="alternate"/>
<author>
<name>Zareno, Kaitlin</name>
</author>
<id>https://hdl.handle.net/1721.1/165509</id>
<updated>2026-04-22T03:08:58Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Sharpness-Aware Minimization (SAM) Improves Classification Accuracy of Bacterial Raman Spectral Data Enabling Portable Diagnostics
Zareno, Kaitlin
Antimicrobial resistance is expected to claim 10 million lives per year by 2050, and resource-limited regions are most affected. In these regions, access to quality hospital-level clinical care and microbiological testing is limited. Thus, it is important to develop a solution for bacterial infection diagnosis that is rapid, reliable, and compact. Two techniques that can help contribute to more reliable diagnostic tools are Raman spectroscopy and deep learning (DL). Raman spectroscopy is a novel pathogen diagnostic approach that promises rapid and portable antibiotic resistance, and can provide results significantly faster then culturing methods. Despite its advantages, current algorithms for Raman spectral analysis 1) are unable to generalize well on limited datasets across diverse patient populations; and 2) require increased complexity due to the low-quality nature of Raman spectral data. In this work, we address the intrinsic challenges of working with Raman spectral data by utilizing Sharpness-Aware Minimization-based (SAM) optimizers for Raman spectral data analysis. We specifically observe this in clinical and non-clinical bacterial isolate classification tasks. We demonstrate that SAM-based optimizers achieve accuracy improvements on bacterial classification tasks. These results display the capability of SAM to advance the application of AI-powered Raman spectroscopy tools, enabling progress towards the translation of rapid on-device pathogen diagnostics for patients in need.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Environmental Drivers of Coastal Evolution</title>
<link href="https://hdl.handle.net/1721.1/165508" rel="alternate"/>
<author>
<name>Sanborn, Lily H.</name>
</author>
<id>https://hdl.handle.net/1721.1/165508</id>
<updated>2026-04-22T03:04:59Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Environmental Drivers of Coastal Evolution
Sanborn, Lily H.
Coastal evolution is shaped by the processes that influence sediment transport at coastlines. The present morphology, sedimentology, and distribution of modern coastal landforms reflect the influence of Holocene environmental processes that have altered the availability and movement of sediment at the coast. In this thesis, I leverage sediment transport modeling, sedimentary field data, and geospatial analysis to constrain the influence of specific environmental drivers of coastal change since the last deglaciation. I present case studies from near-field (North Atlantic) and far-field (tropical Pacific) coastal environments. Chapter 2 models the effects of glacial ice retreat on surface hydrology and quantifies resulting effects on fluvial sediment transport, showing that landscape changes that accompany deglaciation shape the evolution of rivers and the delivery of sediment to the coast. Chapter 3 explores interactions between paleohurricanes and evolving barrier coastlines, examining how coastal development influences the deposition and preservation of sedimentary paleohurricane records that can be used to understand long-term storm recurrence. Chapter 4 reconstructs the influence of Holocene environmental processes on the development of Pacific atoll islands, demonstrating that both sea-level change and temporal variations in storm-driven sediment transport mediated the timing and pace of island formation. Chapter 5 examines processes affecting atoll island development at the regional scale, quantifying patterns in the distribution of islands on atoll reefs relative to local wave climates. Together, these chapters connect coastal sedimentary records and modern morphologies to environmental processes that have shaped coastal development. Through quantitative examination of coastal sedimentary environments, we gain insight into the influence of environmental processes on coastal development across timescales longer than permitted by historic observations. By constraining the magnitude and nature of environmental influences on coastal sediment transport, this thesis contributes to a broader understanding of how environmental change has shaped the evolution of coastlines.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Lithium Garnet Development and Advances for Use in Next-Generation Solid-State Batteries</title>
<link href="https://hdl.handle.net/1721.1/165507" rel="alternate"/>
<author>
<name>Hinricher, Jesse J.</name>
</author>
<id>https://hdl.handle.net/1721.1/165507</id>
<updated>2026-04-22T03:05:03Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Lithium Garnet Development and Advances for Use in Next-Generation Solid-State Batteries
Hinricher, Jesse J.
Batteries power our modern society, but their development is outpaced by technology that requires increasing power output and time between charges. Lithium metal is the most energy dense anode choice available and is the most attractive anode material due to its low density, high specific capacity, and low electrochemical potential. Lithium anodes form dendrites which grow from the anode and, if they contact the cathode, lead to short circuit which could result in thermal runaway and ignition of the organic liquid electrolyte that is the most used electrolyte. Instead, solid-state electrolytes (SSEs) have the potential to omit liquid electrolytes, making them a safer alternative with Li₇La₃Zr₂O₁₂ (LLZO), one of the most commonly used SSEs. Fabrication is typically in the form of ceramic pellets or tapes that require high-temperature processing exceeding 1000 ºC. In contrast, the fabrication method used herein relies on a direct liquid precursor to solid film spray method, Sequential Decomposition Synthesis (SDS), that requires a maximum processing temperature of only 500-750 ºC and yields a low thickness of several microns comparable to standard polymer separators in the battery field. Collectively, this contributes to increasing energy density to more than 30% for next generation batteries, by utilizing a solid-state electrolyte with a low-potential lithium metal anode. &#13;
&#13;
In this thesis, two major areas were focused on: in the first part, SDS-synthesized LLZO has been integrated into batteries for the first time and its cycling stability determined in operating conditions. A distinct advantage of SDS is its low synthesis cost combined with a naturally resulting film thickness in a range difficult to achieve by other methods (1-20 µm), making it easier to incorporate these films into existing battery architectures. It is demonstrated that SDS LLZO electrolyte layers can successfully be deposited on glass fiber support structures and integrated to hybrid semi liquid/solid demonstration cell architecture, suitable for next generation battery prototypes. Further, an amorphous LLZO phase was used to mitigate substrate temperature requirements and grain boundary lithium dendrite propagation. Successful cell cycling of 150 cycles at &gt;80% capacity retention has been demonstrated. The successful demonstration of such low-processing temperature films is significant in the field of energy storage where the majority of projected costs from solid-state electrolyte fabrication is born by processing, rather than raw materials cost. &#13;
&#13;
The second thesis part examines the ability of direct-liquid precursor-to-solid-state electrolyte synthesis via SDS for high throughput and Bayesian optimization-guided synthesis of a high number LLZO chemistries and ceramic nanostructures. In general, solid-state electrolyte development takes many years of labor and resource-intensive brute-force methods driven by humans to optimize conductivity, phase, or processing parameters (e.g. temperature). Instead, a data-driven approach using Bayesian optimization can better traverse a large sample space while requiring fewer samples than a simple grid search which could take months or years to reach the same optimization. We demonstrate that this approach can optimize a surrogate objective function to maximize conductivity by applying it to the well-studied LLZO material. Raman spectroscopy is non-destructive, quick, and information rich and fast which aids in rapid advances. In the first for the field, an SDS system was constructed to mix precursor solutions on demand to span an experimentally plausible composition range. In total, fewer than 100 samples were required to achieve a phase-pure and conductive film of LLZO. The computer-guided campaign optimized the cubic-LLZO phase and elucidated limits to its composition and doping that could be applied to guide future studies. This breakthrough platform enables rapid development of solid-state electrolytes for next-generation batteries. This approach can be adapted to novel solid-state materials that haven’t been synthesized before, enabling faster development of next-generation electrolytes and their batteries.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bridging the Logics of Technocracy and Communitarianism: Translational Micropractices in Housing and Urban Development</title>
<link href="https://hdl.handle.net/1721.1/165506" rel="alternate"/>
<author>
<name>Gade, Anisha</name>
</author>
<id>https://hdl.handle.net/1721.1/165506</id>
<updated>2026-04-22T03:02:27Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Bridging the Logics of Technocracy and Communitarianism: Translational Micropractices in Housing and Urban Development
Gade, Anisha
Our current, entrenched housing crisis requires attending to frictions and conflicting agendas between resident groups and developers of many stripes. Each of these sets of actors maintains distinctive aims, knowledge-creation methods, measures of success and relations to power - all of which amount to a bundle of communicative and meaning-making practices that I term a ‘logic.’ The two logics entail, on the one hand, the technocratic logic indicative of developers, landlords, and sometimes, planners who are oriented to apolitical neutrality, deploy empirical data analysis, establish meaning through quantitative metrics and financial valuations, and are proximate to power. On the other hand, communitarian logics deployed by certain resident groups and their advocates prioritize the redress of harms, trust lived experience, establish meaning through longstanding cultural practices, and are typically distant from power. This dissertation seeks to understand how proponents of these two incommensurable logics struggle to become legible to and negotiate with one another. Facilitating the institutional contexts where such tensions are translated and negotiated are intermediaries of many kinds, including, at times, planners. I explore the process of translation and negotiation between the two logics (a phenomenon that I call ‘bridging’) through three, in-depth case studies. Each of my cases exemplifies an experimental effort at realigning technocratic practices, to varying degrees, with the priorities of residents, even as these priorities are not monolithic. The first case is the creation of a novel cultural preservation district and anti-displacement zoning overlay. The second involves two parallel projects: a participatory action research study linking housing stability to social determinants of health and a real estate equity fund whose ROI metrics are tied to the public health study. And thirdly, public housing administrators deploy digital tenant screening services—proptech—to streamline housing allocation and therefore, improve housing access for poor and disabled populations. With the three cases, I assess the efficacy of realignment efforts by examining the varying degrees of bridging between the two logics. I find that the highest degree of bridging is achieved through the deployment of translational “micropractices” (Healey 2012a). In the cases where this is prevalent, the experimental solution had the greatest potential to make good on its promises. Following the lessons from my cases, to overcome the deep intractability of the current housing crisis, I argue that planners, advocates and scholars must engage with the institutional–and not just economic or market-related–contexts where the political economic dynamics of the relationship between the housing industry and community development proponents play out.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of Small Angle Neutron Scattering Tools for Probing the Phase-Behavior and Self-Assembly of Sequence-Defined Polymers</title>
<link href="https://hdl.handle.net/1721.1/165505" rel="alternate"/>
<author>
<name>Dai, Kexin (Charlotte)</name>
</author>
<id>https://hdl.handle.net/1721.1/165505</id>
<updated>2026-04-22T03:01:27Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Development of Small Angle Neutron Scattering Tools for Probing the Phase-Behavior and Self-Assembly of Sequence-Defined Polymers
Dai, Kexin (Charlotte)
Sequence control in polymers offer a powerful platform for programming self-assembly and phase behavior with monomer-level precision, bridging the structural control of biological macromolecules and the functional tunability of synthetic polymers. However, understanding how primary sequence dictates structure and material properties remains a fundamental challenge due to the vast design space and the lack of high-throughput characterization tools and predictive models. This thesis addresses these challenges by combining recombinant polymer synthesis, coarse-grained simulations, and information-guided scattering techniques to interrogate how molecular-level sequence features drive mesoscale structure, phase behavior, and self-assembly in dilute and concentrated aqueous environments. To enable efficient structural screening, a high-throughput small-angle neutron scattering (SANS) workflow was developed to rapidly evaluate large libraries of sequence-defined polymers under diverse solvent and temperature conditions. By analyzing three classes of model polymer systems and simulating reduced-count datasets, it is shown that accurate parameter estimates (within 5–10% of full-count values) can be obtained using only 1–50% of the original counts, depending on the sample and parameter. Both AIC and BIC can successfully identify the correct model from a candidate set, even with limited data. This approach provides a practical framework to optimize SANS beamtime and supports efficient structural characterization of material libraries. On the experimental end, elastin like polypeptides (ELPs) were used as a model system to understand sequence-property relationships. Thermoresponsive behavior of ABA triblock ELPs was systematically investigated. Two variants differing only in midblock hydrophobicity revealed distinct phase behaviors: one formed temperature-triggered micellar aggregates with syneresis, while the other remained viscoelastic and unstructured across conditions. SANS, rheology, and depolarized light scattering collectively demonstrated how sequence-encoded hydrophobicity and block architecture govern micelle formation, water partitioning, and gel properties near the LCST. The sequence-property landscape was mapped using a series of ELPs with varied guest residues. Turbidimetry in water/ethanol/salt mixtures uncovered how hydrophobicity and charge combine define cononsolvency boundaries and critical transition temperatures, highlighting the role of solvation competition in shaping UCST- and LCST-type transitions. Finally, a highly coarse-grained dumbbell model was developed for globular protein– polymer bioconjugates. Molecular dynamics simulations demonstrated that treating the protein as a hard sphere tethered to a soft polymer tail as a soft sphere captures the essential physics of self-assembly in those systems. Simulated phase diagrams aligned with experimental trends and provided a predictive model for designing protein-polymer bioconjugates and understanding the thermodynamic driving force of self-assembly. By integrating high-throughput structural characterization, insightful coarse-grained models, and large amount of experimental data, this thesis provides quantitative design rules for encoding self-assembly and transitions across molecular, mesoscale, and macroscopic regimes— paving the way for next-generation programmable polymer materials.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Always just over the horizon: Reprocessing and the perpetually promised future</title>
<link href="https://hdl.handle.net/1721.1/165504" rel="alternate"/>
<author>
<name>Ridzuan Chun, Noor Maslinda binti</name>
</author>
<id>https://hdl.handle.net/1721.1/165504</id>
<updated>2026-04-22T03:07:00Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Always just over the horizon: Reprocessing and the perpetually promised future
Ridzuan Chun, Noor Maslinda binti
After the collapse of nuclear commercial reprocessing ventures in the 1970s in the U.S., reprocessing became a policy taboo; yet in the following decades, it repeatedly resurfaced and receded—returning as promise, as policy, as horizon. This paper asks why reprocessing endures in expert and governmental imaginaries despite sustained consensus regarding unfavorable economics, environmental liabilities, and proliferation risks. It argues that reprocessing persists not as an effective backend solution but as a speculative remainder: an infrastructure and imaginary whose institutional life was never conclusively closed and whose promissory futures remain suspended, available for reactivation whenever waste, scarcity, or sovereignty demands technical redemption. Through paired case studies of West Valley, New York—the nation’s only operating commercial reprocessing plant (1966–1972), subsequently converted by the 1980 West Valley Demonstration Project into a federally managed cleanup—and Barnwell, South Carolina—a fully constructed facility stranded by the post-1974 nonproliferation turn, evolving nuclear safeguards, and waste-solidification requirements—the essay traces a migration of purpose from mid-century abundance (fuel extension, breeder futures, a “closed” cycle) to later rationales of waste mitigation, energy security, and, most recently, climate policy. Methodologically, this paper reads reprocessing as speculative infrastructure, drawing on STS scholarship on co-production, sociotechnical imaginaries, anticipatory governance, and the “politics of impossibility” that renders long-lived harm administratively manageable while deferring resolution. The historiographical intervention is twofold: first, to reposition reprocessing from a marginal cautionary tale to a central device through which the U.S. nuclear enterprise sustains legitimacy—a placeholder that promises eventual closure of waste and fuel constraints while enabling continued front-end expansion; second, to reconceptualize energy history as governance by deferral and remainder rather than a linear arc of innovation and obsolescence, wherein breakdown yields repurposing and policy displacement rather than decommissioning. Seen in this light, the Ford–Carter moratoria, Reagan-era revivalism, the Bush-era Global Nuclear Energy Partnership, and twenty-first-century “advanced recycling” campaigns appear as cyclical reanimations that attach new vocabularies to an unresolved core, keeping the future—deliberately—just over the horizon.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Building the Infrastructure for Innovation: A Market Entry Strategy for Cambridge Innovation Center in India</title>
<link href="https://hdl.handle.net/1721.1/165503" rel="alternate"/>
<author>
<name>Kalra, Shagun</name>
</author>
<id>https://hdl.handle.net/1721.1/165503</id>
<updated>2026-04-22T03:09:23Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Building the Infrastructure for Innovation: A Market Entry Strategy for Cambridge Innovation Center in India
Kalra, Shagun
This thesis examines whether the Cambridge Innovation Center’s ecosystem-based model can be adapted to India’s rapidly evolving innovation landscape. CIC’s global approach integrates space, community, and advisory functions to strengthen coordination among research institutions, corporates, and government actors. While this model emerged in highly coherent environments such as Kendall Square and later expanded successfully to cities like Rotterdam and Tokyo, its applicability to India requires careful evaluation given the country’s institutional fragmentation and regulatory complexity. The analysis draws on market research, expert conversations, policy review, and comparative international precedent. It assesses India’s feasibility across five dimensions: market demand, financial return potential, policy environment, institutional partnership strength, and social and environmental alignment. The resulting feasibility index, though interpretive, indicates that none of these dimensions pose structural barriers to CIC’s entry. Instead, India’s deepening capital markets, state-level innovation programs, and rising corporate interest in open innovation position the country as a promising but operationally demanding opportunity. Based on these findings, the thesis proposes a phased entry strategy anchored in a joint-venture or management agreement structure with a credible Indian partner. A focused pilot campus would test partner reliability and market fit, followed by broader institutional integration and, eventually, a distributed multi-city network. While risks related to regulation, currency exposure, and market volatility require deliberate governance and design, they are manageable within a structured partnership model. Taken together, the analysis suggests that India offers a viable and strategically meaningful expansion path for CIC.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Revealing the Chemistry, Structure, and Self-Assembly of the Lead Sulfide Nanocrystal Ligand Shell through Small-Angle Neutron Scattering</title>
<link href="https://hdl.handle.net/1721.1/165502" rel="alternate"/>
<author>
<name>Price, Eliza K.</name>
</author>
<id>https://hdl.handle.net/1721.1/165502</id>
<updated>2026-04-22T03:03:31Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Revealing the Chemistry, Structure, and Self-Assembly of the Lead Sulfide Nanocrystal Ligand Shell through Small-Angle Neutron Scattering
Price, Eliza K.
Colloidal, semiconducting nanocrystals (NCs), or quantum dots, are composed of an inorganic core coated in an organic ligand shell and are of interest for next-generation sensing, photovoltaic, and computing devices. Successful integration of NCs into devices requires rigorous synthetic control and materials characterization. In pursuit of this goal, the impact of the inorganic core of NCs on devices has been thoroughly studied, where the size, composition, and monodispersity of the core determine the bandgap of NCs through quantum confinement effects. The organic ligand shell is also critical to the processibility, self-assembly, and functional properties of NCs, but the structure-property relationships of ligands are not well understood due to the insensitivity of common structural characterization methods to the ligand shell.&#13;
&#13;
This thesis advances understanding of the structure and impact of the organic ligand shell coating the surface of semiconducting nanocrystals by studying the chemistry, structure, and self-assembly behavior of the ligand shell for the model system of lead sulfide (PbS) NCs. We apply a combination of experimental techniques and thermodynamic modeling, and in particular, leverage small-angle neutron scattering (SANS) to directly characterize the structure of the ligand shell, resolving details of NC surface termination, ligand shell thickness, and ligand shell solvation that cannot be seen with other methods.&#13;
&#13;
This thesis highlights best practices for ligand shell characterization and new insights for the synthesis of NCs and design of NC SLs in our studies of PbS NCs. First, we show that the surface termination and ligand passivation of PbS NCs are sensitive to the post-synthetic purification method. Using a combination of SANS, 1H-NMR, and optical characterization, we distinguish the core size, optical emission, and ligand exchange properties of PbS[RNH3+Cl-] and PbS@PbClx NCs. Then, we apply a suite of scattering techniques, including SANS and small-angle X-ray scattering (SAXS), to quantify how the colloidal structure of the ligand shell coating PbS NCs impacts interparticle interactions and self-assembly. We observe unexpected trends in&#13;
the colloidal structure of the NC ligand shell, arising from curvature and solvent-dependent interactions, and find that the colloidal ligand shell structure correlates with the structure of self-assembled NC superlattices. Finally, we show that ligand entropy impacts the coherent orientation of NCs within close-packed NC superlattices.&#13;
&#13;
Since SANS methods are nascent within the field of colloidal nanocrystals, this thesis documents the theory of scattering methods and presents an optimal experimental design framework for SANS studies. Using statistical information theory, we quantify how the uncertainty of the structural parameters describing the NC ligand shell varies with SANS experimental design. Ultimately, the experimental design framework provides a rational framework through which to navigate tradeoffs of cost, measurement time, and parameter certainty in SANS experiments.&#13;
&#13;
This thesis advances understanding of the structure-property relationships of the organic ligand shell coating semiconducting NCs, pioneering SANS as a uniquely sensitive method to understand organic ligands. These studies lay the groundwork for future efforts of ligand shell design with unprecedented structural understanding through SANS.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cracks of Opportunity: Unveiling the Impact of Misconduct Disclosure on Workers’ Careers</title>
<link href="https://hdl.handle.net/1721.1/165501" rel="alternate"/>
<author>
<name>Garg, Moksh</name>
</author>
<id>https://hdl.handle.net/1721.1/165501</id>
<updated>2026-04-22T03:09:33Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Cracks of Opportunity: Unveiling the Impact of Misconduct Disclosure on Workers’ Careers
Garg, Moksh
Organizational misconduct and its disclosure can have lasting effects on the careers of key organizational members, yet little is known about its impact on lower-ranked employees. Prior research focuses primarily on elites, offering only a partial understanding of how disclosure shapes outcomes across the broader workforce. To extend this line of inquiry, we develop a duallens theoretical framework that conceptualizes misconduct disclosure as both discrediting and reformative. While disclosure can stigmatize employees through association with wrongdoing, it can also disrupt exploitative organizational arrangements, potentially creating opportunities for upward mobility among lower-ranked workers. Leveraging detailed firm-level microdata and Brazil’s major state-led anti-corruption crackdown as an exogenous shock, we find evidence consistent with our framework: upper white-collar workers experience significant wage declines and are more likely to exit the formal sector, whereas blue-collar employees who remain in or reenter formal employment experience large and persistent wage gains. These effects hold across gender and racial groups and withstand multiple robustness checks, suggesting a wage-leveling mechanism triggered by the disruption of exploitative pay structures. Together, our findings reveal how misconduct disclosure, while punitive for some, can unintentionally advantage others by reshaping organizational hierarchies and reducing pay inequality.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>What Do Large Factor Models Learn? Self-Induced Regularization, Cost of Overfitting, and Self-Adaptivity</title>
<link href="https://hdl.handle.net/1721.1/165500" rel="alternate"/>
<author>
<name>Xiong, Xin</name>
</author>
<id>https://hdl.handle.net/1721.1/165500</id>
<updated>2026-04-22T03:09:10Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">What Do Large Factor Models Learn? Self-Induced Regularization, Cost of Overfitting, and Self-Adaptivity
Xiong, Xin
This paper studies the out-of-sample performance of large, overparameterized linear factor models for stochastic discount factor (SDF) estimation. Motivated by recent advances in finance and machine learning, we analyze the all-inclusive ridge estimator that incorporates all candidate factors without ex-ante screening or dimension reduction. Our new non-asymptotic pricing error bounds reveal that including many low-variance principal components implicitly increases the effective penalty on high-variance components, shrinking the estimated SDF and biasing performance. We further show that exact interpolation in the low-variance space leads to bounded out-of-sample deterioration, as the fitted coefficients behave effectively like zero and incur little additional error relative to underspecification. In addition, ridge regression self-adapts by emphasizing top principal components without knowing which factors are important, effectively mimicking a data-driven cutoff in principal component regression. These findings extend benign overfitting theory to the inherently misspecified setting of SDF estimation, where classical linear regression assumptions fail. Empirically, we validate these insights using U.S. equity data and large factor sets constructed via Random Fourier Features (RFF). We find that noise factors degrade performance through bias rather than variance inflation, and that adding weak but priced factors can hurt model performance. Lastly, we show that mildly negative ridge penalties can enhance model performance, consistent with our theoretical prediction that they partially offset self-induced regularization.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of a Biohybrid Tendon Interface for Muscle-Powered Robots</title>
<link href="https://hdl.handle.net/1721.1/165499" rel="alternate"/>
<author>
<name>Castro, Nicolas S.</name>
</author>
<id>https://hdl.handle.net/1721.1/165499</id>
<updated>2026-04-22T03:09:53Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Development of a Biohybrid Tendon Interface for Muscle-Powered Robots
Castro, Nicolas S.
Unlike metal and plastic, biological materials can communicate with their surroundings, adapt to stimuli, and self-repair damage. Incorporating these materials into engineered systems could foster smarter, more adaptable machines. We have shown that engineered skeletal muscle stretched around an elastomer ‘skeleton’ can generate force and drive locomotion. However, the interface between the biotic and abiotic components of this robotic system are friction-based, leading to inefficient force transmission. In the body, muscle is covalently tethered to bone via tendons, which efficiently transmit force. Thus, we have developed a bioinspired synthetic tendon to act as a biohybrid interface, enabling the design of more modular and adaptive biohybrid machines.&#13;
&#13;
We developed a tough adhesive hydrogel tendon, composed of a poly(acrylic acid) hydrogel functionalized for tissue adhesion with N-Hydroxysuccinimide ester groups, in collaboration with the Zhao Lab at MIT. Muscle tissues were manufactured from C2C12 mouse myoblasts seeded into a fibrin and Matrigel matrix. Peel tests of these differentiated and undifferentiated muscle tissues bound to the synthetic tendon revealed that the biotic-abiotic interface could withstand forces &gt;500mN before breaking. This is significantly greater than those generated from the contraction of engineered muscle (~300uN), demonstrating a robust binding. A cell viability assay and pH exposure test confirmed that the synthetic tendon had no significant impact on muscle health, indicating general biocompatibility.&#13;
&#13;
Furthermore, we have been able to bind strips of mature engineered skeletal muscle tissue between two strips of synthetic tendon, akin to myotendinous junctions in vivo. We have leveraged this tendon-muscle-tendon (TMT) construct as a modular actuator that can be mechanically coupled to robotic skeletons to generate force and produce motion. We are evaluating the effects of varying synthetic tendon stiffness and preload tension on the force production capability of these units, enabling the optimized design and deployment of TMT actuators in untethered machines. In short, we have developed a hydrogel tendon system that serves as a robust biocompatible musculoskeletal interface.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Online Education Opens up Learning Opportunities Agnostic of Age and Geography</title>
<link href="https://hdl.handle.net/1721.1/165498" rel="alternate"/>
<author>
<name>Datta, Shoumen</name>
</author>
<id>https://hdl.handle.net/1721.1/165498</id>
<updated>2026-04-27T12:32:52Z</updated>
<published>2026-04-19T00:00:00Z</published>
<summary type="text">Online Education Opens up Learning Opportunities Agnostic of Age and Geography
Datta, Shoumen
An array of biased clues (suggestions; planning tools) for autodidacts to explore and pursue paths known and parts unknown.
</summary>
<dc:date>2026-04-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Global Assessment of the Controls on the Fractionation of Arc Magmas</title>
<link href="https://hdl.handle.net/1721.1/165497" rel="alternate"/>
<author>
<name>Klein, Benjamin Z</name>
</author>
<author>
<name>Jagoutz, Oliver</name>
</author>
<author>
<name>Schmidt, Max W</name>
</author>
<author>
<name>Kueter, Nico</name>
</author>
<id>https://hdl.handle.net/1721.1/165497</id>
<updated>2026-04-18T03:08:21Z</updated>
<published>2023-05-16T00:00:00Z</published>
<summary type="text">A Global Assessment of the Controls on the Fractionation of Arc Magmas
Klein, Benjamin Z; Jagoutz, Oliver; Schmidt, Max W; Kueter, Nico
During the differentiation of arc magmas, fractionating liquids follow a series of cotectics, where the co-crystallization of multiple minerals control the melt compositional trajectories, commonly referred to as liquid lines of descent (LLD). These cotectics are sensitive to intensive properties, including fractionation pressure and melt H2O concentration, and changes in these variables produce systematic differences in the LLDs of arc lavas. Based on a compilation of experimental studies, we develop two major element proxies that exploit differences in LLDs to constrain the fractionation conditions of arc magmas. Near-primary fractionating magmas evolve along the olivine-clinopyroxene cotectic, which is pressure-sensitive. We use this sensitivity to develop a proxy for early fractionation pressure based on the normative mineral compositions of melts with 8 ± 1 wt.% MgO. Fractionation in more evolved magmas is controlled by the clinopyroxene-plagioclase cotectic, which is strongly sensitive to magmatic H2O contents. We use this relationship to develop an H2O proxy that is calibrated to the normative mineral components of melts with 2–4 wt.% MgO. These two proxies provide new tools for estimating the variations in pressure and temperature between magmatic systems. We applied these proxies to compiled major element data and phenocryst assemblages from modern volcanic arcs and show that in island arcs early fractionation is relatively shallow and magmas are dominantly H2O-poor, while continental arcs are characterized by more hydrous and deeper early fractionation. These differences likely reflect variations in the relative contributions of decompression and flux melting in combination with distinct upper plate controls on arc melt generation.
</summary>
<dc:date>2023-05-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Systems Analysis of Sustainability Impacts of Agricultural Policies in India</title>
<link href="https://hdl.handle.net/1721.1/165496" rel="alternate"/>
<author>
<name>Maji, P</name>
</author>
<author>
<name>Selin, NE</name>
</author>
<id>https://hdl.handle.net/1721.1/165496</id>
<updated>2026-04-18T03:05:15Z</updated>
<published>2024-01-29T00:00:00Z</published>
<summary type="text">A Systems Analysis of Sustainability Impacts of Agricultural Policies in India
Maji, P; Selin, NE
We apply a systems framework for analyzing the overall sustainability impacts of interventions to a case of the rice‐wheat cropping system of Punjab (India), where agricultural practices lead to air pollution‐related health impacts, over‐exploitation of groundwater, over‐use of fertilizers and reduced local crop diversity. We use this case to quantify how varying degrees of change in interventions result in sustainability impacts using an inclusive wealth‐based approach. We show that either improving the existing cropping system or inducing fundamental changes in the cropping system, can lead to substantial and wide‐ranging sustainability benefits. We also show that interventions that improve human health show the largest quantitative benefit due to the assumed high marginal value of human life. Accurate localized estimates of marginal values of stocks are needed for estimating overall sustainability impacts.
</summary>
<dc:date>2024-01-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Oriented Bedrock Samples Drilled by the Perseverance Rover on Mars</title>
<link href="https://hdl.handle.net/1721.1/165495" rel="alternate"/>
<author>
<name>Weiss, Benjamin P</name>
</author>
<author>
<name>Mansbach, Elias N</name>
</author>
<author>
<name>Carsten, Joseph L</name>
</author>
<author>
<name>Kaplan, Kyle W</name>
</author>
<author>
<name>Maki, Justin N</name>
</author>
<author>
<name>Wiens, Roger C</name>
</author>
<author>
<name>Bosak, Tanja</name>
</author>
<author>
<name>Collins, Curtis L</name>
</author>
<author>
<name>Fentress, Jennifer</name>
</author>
<author>
<name>Feinberg, Joshua M</name>
</author>
<author>
<name>Goreva, Yulia</name>
</author>
<author>
<name>Kennedy Wu, Megan</name>
</author>
<author>
<name>Estlin, Tara A</name>
</author>
<author>
<name>Klein, Douglas E</name>
</author>
<author>
<name>Kronyak, Rachel E</name>
</author>
<author>
<name>Moeller, Robert C</name>
</author>
<author>
<name>Peper, Nicholas</name>
</author>
<author>
<name>Reyes‐Newell, Adriana</name>
</author>
<author>
<name>Sephton, Mark A</name>
</author>
<author>
<name>Shuster, David L</name>
</author>
<author>
<name>Simon, Justin I</name>
</author>
<author>
<name>Williford, Kenneth H</name>
</author>
<author>
<name>Stack, Kathryn W</name>
</author>
<author>
<name>Farley, Kenneth A</name>
</author>
<id>https://hdl.handle.net/1721.1/165495</id>
<updated>2026-04-18T03:06:13Z</updated>
<published>2024-03-04T00:00:00Z</published>
<summary type="text">Oriented Bedrock Samples Drilled by the Perseverance Rover on Mars
Weiss, Benjamin P; Mansbach, Elias N; Carsten, Joseph L; Kaplan, Kyle W; Maki, Justin N; Wiens, Roger C; Bosak, Tanja; Collins, Curtis L; Fentress, Jennifer; Feinberg, Joshua M; Goreva, Yulia; Kennedy Wu, Megan; Estlin, Tara A; Klein, Douglas E; Kronyak, Rachel E; Moeller, Robert C; Peper, Nicholas; Reyes‐Newell, Adriana; Sephton, Mark A; Shuster, David L; Simon, Justin I; Williford, Kenneth H; Stack, Kathryn W; Farley, Kenneth A
A key objective of the Perseverance rover mission is to acquire samples of Martian rocks for future return to Earth. Eventual laboratory analyses of these samples would address key questions about the evolution of the Martian climate, interior, and habitability. Many such investigations would benefit greatly from samples of Martian bedrock that are oriented in absolute Martian geographic coordinates. However, the Mars 2020 mission was designed without a requirement for orienting the samples. Here we describe a methodology that we developed for orienting rover drill cores in the Martian geographic frame and its application to Perseverance's first 20 rock samples. To orient the cores, three angles were measured: the azimuth and hade of the core pointing vector (i.e., vector oriented along the core axis) and the core roll (i.e., the solid body angle of rotation around the pointing vector). We estimated the core pointing vector from the attitude of the rover's Coring Drill during drilling. To orient the core roll, we used oriented images of asymmetric markings on the bedrock surface acquired with the rover's Wide Angle Topographic Sensor for Operations and eNgineering (WATSON) camera. For most samples, these markings were in the form of natural features on the outcrop, while for four samples they were artificial ablation pits produced by the rover's SuperCam laser. These cores are the first geographically-oriented (&lt;2.7° 3σ total uncertainty) bedrock samples from another planetary body. This will enable a diversity of paleomagnetic, sedimentological, igneous, tectonic, and astrobiological studies on the returned samples.
</summary>
<dc:date>2024-03-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Post‐Launch Summary of the Science of NASA's Psyche Mission</title>
<link href="https://hdl.handle.net/1721.1/165494" rel="alternate"/>
<author>
<name>Dibb, Steven D</name>
</author>
<author>
<name>Asphaug, Erik</name>
</author>
<author>
<name>Bell, James F</name>
</author>
<author>
<name>Binzel, Richard P</name>
</author>
<author>
<name>Bottke, William F</name>
</author>
<author>
<name>Cambioni, Saverio</name>
</author>
<author>
<name>Christoph, John M</name>
</author>
<author>
<name>Elkins‐Tanton, Linda T</name>
</author>
<author>
<name>Jaumann, Ralf</name>
</author>
<author>
<name>Lawrence, David J</name>
</author>
<author>
<name>Oran, Rona</name>
</author>
<author>
<name>O’Rourke, Joseph G</name>
</author>
<author>
<name>Polansky, Carol</name>
</author>
<author>
<name>Weiss, Benjamin P</name>
</author>
<author>
<name>Wieczorek, Mark</name>
</author>
<author>
<name>Williams, David A</name>
</author>
<id>https://hdl.handle.net/1721.1/165494</id>
<updated>2026-04-18T03:06:55Z</updated>
<published>2024-04-01T00:00:00Z</published>
<summary type="text">A Post‐Launch Summary of the Science of NASA's Psyche Mission
Dibb, Steven D; Asphaug, Erik; Bell, James F; Binzel, Richard P; Bottke, William F; Cambioni, Saverio; Christoph, John M; Elkins‐Tanton, Linda T; Jaumann, Ralf; Lawrence, David J; Oran, Rona; O’Rourke, Joseph G; Polansky, Carol; Weiss, Benjamin P; Wieczorek, Mark; Williams, David A
Astronomical observations indicate that asteroid (16) Psyche is a large, high-density (likely &gt;3,400 kg·m−3), metal-rich (30–55 vol. %) asteroid. Psyche may be remnant core material or it could be a primordial, undifferentiated metal-rich object. We discuss the science objectives of the upcoming Psyche mission, which will employ three instruments (the Magnetometer, Multispectral Imager, and Gamma-Ray and Neutron Spectrometer) and will use Doppler tracking of the spacecraft to explore the asteroid. This mission will shed light on the nature and origins of metal-rich objects in the solar system and beyond, including the cores of the terrestrial planets.
</summary>
<dc:date>2024-04-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Remotely Sensed Soil Moisture Can Capture Dynamics Relevant to Plant Water Uptake</title>
<link href="https://hdl.handle.net/1721.1/165493" rel="alternate"/>
<author>
<name>Feldman, Andrew F</name>
</author>
<author>
<name>Short Gianotti, Daniel J</name>
</author>
<author>
<name>Dong, Jianzhi</name>
</author>
<author>
<name>Akbar, Ruzbeh</name>
</author>
<author>
<name>Crow, Wade T</name>
</author>
<author>
<name>McColl, Kaighin A</name>
</author>
<author>
<name>Konings, Alexandra G</name>
</author>
<author>
<name>Nippert, Jesse B</name>
</author>
<author>
<name>Tumber‐Dávila, Shersingh Joseph</name>
</author>
<author>
<name>Holbrook, Noel M</name>
</author>
<author>
<name>Rockwell, Fulton E</name>
</author>
<author>
<name>Scott, Russell L</name>
</author>
<author>
<name>Reichle, Rolf H</name>
</author>
<author>
<name>Chatterjee, Abhishek</name>
</author>
<author>
<name>Joiner, Joanna</name>
</author>
<author>
<name>Poulter, Benjamin</name>
</author>
<author>
<name>Entekhabi, Dara</name>
</author>
<id>https://hdl.handle.net/1721.1/165493</id>
<updated>2026-04-18T03:08:17Z</updated>
<published>2023-01-26T00:00:00Z</published>
<summary type="text">Remotely Sensed Soil Moisture Can Capture Dynamics Relevant to Plant Water Uptake
Feldman, Andrew F; Short Gianotti, Daniel J; Dong, Jianzhi; Akbar, Ruzbeh; Crow, Wade T; McColl, Kaighin A; Konings, Alexandra G; Nippert, Jesse B; Tumber‐Dávila, Shersingh Joseph; Holbrook, Noel M; Rockwell, Fulton E; Scott, Russell L; Reichle, Rolf H; Chatterjee, Abhishek; Joiner, Joanna; Poulter, Benjamin; Entekhabi, Dara
A frequently expressed viewpoint across the Earth science community is that global soil moisture estimates from satellite L‐band (1.4 GHz) measurements represent moisture only in a shallow surface layer (0–5 cm) and consequently are of limited value for studying global terrestrial ecosystems because plants use water from deeper rootzones. Using this argumentation, many observation‐based land surface studies avoid satellite‐observed soil moisture. Here, based on peer‐reviewed literature across several fields, we argue that such a viewpoint is overly limiting for two reasons. First, microwave soil emission depth considerations and statistical considerations of vertically correlated soil moisture information together indicate that L‐band measurements carry information about soil moisture extending below the commonly referenced 5 cm in many conditions. However, spatial variations of effective depths of representation remain uncertain. Second, in reviewing isotopic tracer field studies of plant water uptake, we find a prevalence of vegetation that primarily draws moisture from these upper soil layers. This is especially true for grasslands and croplands covering more than a third of global vegetated surfaces. Even some deeper‐rooted species (i.e., shrubs and trees) preferentially or seasonally draw water from the upper soil layers. Therefore, L‐band satellite soil moisture estimates are more relevant to global vegetation water uptake than commonly appreciated (i.e., relevant beyond only shallow soil processes like soil evaporation). Our commentary encourages the application of satellite soil moisture across a broader range of terrestrial hydrosphere and biosphere studies while urging more rigorous estimates of its effective depth of representation.
</summary>
<dc:date>2023-01-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Electrospun Liquid-Infused Membranes for Emulsified Oil/Water Separation</title>
<link href="https://hdl.handle.net/1721.1/165492" rel="alternate"/>
<author>
<name>Song, Chen</name>
</author>
<author>
<name>Rutledge, Gregory C</name>
</author>
<id>https://hdl.handle.net/1721.1/165492</id>
<updated>2026-04-18T03:05:10Z</updated>
<published>2022-02-07T00:00:00Z</published>
<summary type="text">Electrospun Liquid-Infused Membranes for Emulsified Oil/Water Separation
Song, Chen; Rutledge, Gregory C
From an environmental perspective, microfiltration membranes are attractive for the separation of emulsified oils from contaminated water. However, fouling of the membrane is a major drawback of the technology. "Liquid-infused membranes" (LIMs) have the potential to eliminate membrane fouling. Here, we demonstrate the practical application of LIMs for the separation of oil from a stable oil-in-water emulsion and characterize their resistance to fouling. The base membrane is an electrospun nonwoven fibrous layer of the fluorinated copolymer poly(vinylidene fluoride-co-hexafluoropropylene) (PVDF-co-HFP). The surface energy of the PVDF-co-HFP fibers was lowered by the covalent attachment of a fluorinated silane (PFOCTS), and then, the membrane was infused with a perfluoropolyether. The membrane was then challenged with model emulsions of dodecane in water in a cross-flow configuration. This PFOCTS-modified LIM showed better infused liquid stability, permeation selectivity, higher permeate flux than the unmodified LIM, and better anti-fouling properties than the bare membrane without infused liquid. We also examine the mechanism for transport of the dispersed oil phase through the liquid-infused membrane. We find a linear relationship between the dodecane flux and dodecane concentration in the feed and a higher dodecane flux through the PFOCTS-modified membrane than the unmodified one, which suggests that the capture of dodecane droplets from the feed plays an important role in determining the overall rate of permeation. Other factors such as lower viscosity of the infused liquid, larger pore size, and higher operating pressure also improved the permeate flux through the LIMs. Overall, this work provides some guidelines on the design of composite membranes comprising infused liquids and the choice of operating conditions for the filtration process.
</summary>
<dc:date>2022-02-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Experiments and Modeling of Flow-Enhanced Nucleation in LLDPE</title>
<link href="https://hdl.handle.net/1721.1/165491" rel="alternate"/>
<author>
<name>Nicholson, David A</name>
</author>
<author>
<name>Andreev, Marat</name>
</author>
<author>
<name>Kearns, Kenneth L</name>
</author>
<author>
<name>Chyasnavichyus, Marius</name>
</author>
<author>
<name>Monaenkova, Daria</name>
</author>
<author>
<name>Moore, Jonathan</name>
</author>
<author>
<name>den Doelder, Jaap</name>
</author>
<author>
<name>Rutledge, Gregory C</name>
</author>
<id>https://hdl.handle.net/1721.1/165491</id>
<updated>2026-04-18T03:07:10Z</updated>
<published>2022-08-23T00:00:00Z</published>
<summary type="text">Experiments and Modeling of Flow-Enhanced Nucleation in LLDPE
Nicholson, David A; Andreev, Marat; Kearns, Kenneth L; Chyasnavichyus, Marius; Monaenkova, Daria; Moore, Jonathan; den Doelder, Jaap; Rutledge, Gregory C
A computational and experimental framework for quantifying flow-enhanced nucleation (FEN) in polymers is presented and demonstrated for an industrial-grade linear low-density polyethylene (LLDPE). Experimentally, kinetic measurements of isothermal crystallization were performed by using fast-scanning calorimetry (FSC) for melts that were presheared at various strain rates. The effect of shear on the average conformation tensor of the melt was modeled with the discrete slip-link model (DSM). The conformation tensor was then related to the acceleration in nucleation kinetics by using an expression previously validated with nonequilibrium molecular dynamics (NEMD). The expression is based on the nematic order tensor of Kuhn segments, which can be obtained from the conformation tensor of entanglement strands. The single adjustable parameter of the model was determined by fitting to the experimental FSC data. This expression accurately describes FEN for the LLDPE, representing a significant advancement toward the development of a fully integrated processing model for crystallizable polymers.
</summary>
<dc:date>2022-08-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Statistics of Gaussian polymer chains in harmonic applied fields</title>
<link href="https://hdl.handle.net/1721.1/165490" rel="alternate"/>
<author>
<name>Mikhail, John P</name>
</author>
<author>
<name>Rutledge, Gregory C</name>
</author>
<id>https://hdl.handle.net/1721.1/165490</id>
<updated>2026-04-18T03:06:29Z</updated>
<published>2024-05-29T00:00:00Z</published>
<summary type="text">Statistics of Gaussian polymer chains in harmonic applied fields
Mikhail, John P; Rutledge, Gregory C
The model of an ideal polymer chain in a harmonic applied field has broad applicability in situations involving polymer confinement and deformation due to applied stress. In this work we (1) formulate a general analytical model for a continuous Gaussian chain under a harmonic applied potential and (2) evaluate the statistical mechanics of this model given the potential, obtaining partition functions and moment generating functions (MGFs) that describe the chain configurations. Closed-form expressions for the squared radius of gyration, potential energy, partition function, and MGF for the center of mass are obtained for a general and multidimensional harmonic field. The expressions are compared with results of Monte Carlo simulations of a discrete Gaussian chain as well as results for related systems obtained from the literature. The theory derived here is used to test the applicability of the current model assumptions to relations from the literature describing polymer confinement and deformation in experiment, theory, and simulations.
</summary>
<dc:date>2024-05-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of Electrospun Polyacrylonitrile Aerosol Filter Media for Respiratory Personal Protective Equipment</title>
<link href="https://hdl.handle.net/1721.1/165489" rel="alternate"/>
<author>
<name>Ewell, Nathan</name>
</author>
<author>
<name>Lee, Jeonyoon</name>
</author>
<author>
<name>Mulherin, Kristen</name>
</author>
<author>
<name>Rutledge, Gregory C</name>
</author>
<id>https://hdl.handle.net/1721.1/165489</id>
<updated>2026-04-18T03:04:58Z</updated>
<published>2024-04-15T00:00:00Z</published>
<summary type="text">Development of Electrospun Polyacrylonitrile Aerosol Filter Media for Respiratory Personal Protective Equipment
Ewell, Nathan; Lee, Jeonyoon; Mulherin, Kristen; Rutledge, Gregory C
The COVID-19 pandemic highlighted the importance of respiratory personal protective equipment (PPE) as a means of reducing the spread of disease via aerosolized droplets. For years, N95-type filtering facepiece respirators based on meltblown polypropylene nonwovens have been the technology of choice for healthcare professionals and personal use. However, their reliance on electrostatic charges to achieve an acceptable trade-off between filtration efficiency and pressure drop has led to concerns about shelf life, reusability, quality control, and versatility of materials. In this study, we show that media in which an electrospun polyacrylonitrile (PAN) nonwoven serves as the active layer, comprising fibers of much smaller diameter than typical meltblown fibers, can achieve high levels of filtration efficiency combined with low pressure drop without the assistance of electrostatic charging. Moreover, the aerosol filtration data is well-described by the slip flow-modified Kuwabara model for pressure drop and a single fiber efficiency model that takes into account particle collection via diffusion, interception, and impaction. These models may be used to guide the further design of nanofiber filters. Combined with a spunbond substrate, the proposed filtration media resolves practical concerns regarding mechanical robustness and residual solvent, and it has been fabricated into filtering facepiece respirators that meet N95 filtration standards when tested by standard methods.
</summary>
<dc:date>2024-04-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Heterogeneous Nucleation of High-Density Polyethylene Crystals on Graphene within Microdomains</title>
<link href="https://hdl.handle.net/1721.1/165488" rel="alternate"/>
<author>
<name>Volchko, Nathan W</name>
</author>
<author>
<name>Rutledge, Gregory C</name>
</author>
<id>https://hdl.handle.net/1721.1/165488</id>
<updated>2026-04-18T03:07:56Z</updated>
<published>2023-05-15T00:00:00Z</published>
<summary type="text">Heterogeneous Nucleation of High-Density Polyethylene Crystals on Graphene within Microdomains
Volchko, Nathan W; Rutledge, Gregory C
In polymer processes, nucleating agents are often used to control the kinetics of crystallization, but their application remains largely a matter of trial and error. Thermodynamically, the efficiency of a nucleating agent can be quantified by the difference in substrate/crystal, crystal/melt, and substrate/melt interfacial energies, Δσ. In this work, the efficiency of graphene nanoplatelets (GNP) as nucleating agents for high-density polyethylene (HDPE) is investigated. HDPE nucleates and crystallizes rapidly, so Δσ can be especially difficult to measure experimentally. To overcome this difficulty, blends of HDPE+GNP are confined to microdomains so that crystallization becomes nucleation limited. Two methods of microdomain formation are employed. In the first, HDPE+GNP is melt-blended with an immiscible matrix of polystyrene (PS), and crystallization is characterized using differential scanning calorimetry (DSC); in the second, dispersions of HDPE+GNP in toluene are sprayed onto PS substrates, and crystallization is characterized with polarized optical microscopy (POM). Heterogeneous nucleation rates at several crystallization temperatures and for several GNP loadings were measured by these two methods and found to give excellent agreement across GNP loadings. The value of Δσ for HDPE+GNP is calculated to be 0.83 ± 0.18 erg/cm2. This value is only 2.8 times larger than that reported for HDPE nucleated heterogeneously on a HDPE fiber, a nearly ideal nucleating agent for HDPE, and much smaller than many of the best nucleating agents reported for other polymers. We conclude that GNP is an efficient nucleating agent for HDPE.
</summary>
<dc:date>2023-05-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Three-Dimensional Imaging of Emulsion Separation through Liquid-Infused Membranes Using Confocal Laser Scanning Microscopy</title>
<link href="https://hdl.handle.net/1721.1/165487" rel="alternate"/>
<author>
<name>Song, Chen</name>
</author>
<author>
<name>Rutledge, Gregory C</name>
</author>
<id>https://hdl.handle.net/1721.1/165487</id>
<updated>2026-04-18T03:08:05Z</updated>
<published>2023-08-04T00:00:00Z</published>
<summary type="text">Three-Dimensional Imaging of Emulsion Separation through Liquid-Infused Membranes Using Confocal Laser Scanning Microscopy
Song, Chen; Rutledge, Gregory C
The removal of emulsified oils from water has always been a challenge due to the kinetic stability resulting from the small droplet size and the presence of stabilizing agents. Membrane technology can treat such mixtures, but fouling of the membrane leads to dramatic reductions in the process capacity. Liquid-infused membranes (LIMs) can potentially resolve the issue of fouling. However, their low permeate flux compared with conventional hydrophilic membranes remains a limitation. To gain insight into the mechanism of transport, we use 3D images acquired by confocal laser scanning microscopy (CLSM) to reconstruct the sequence of events occurring during startup and operation of the LIM for removal of dispersed oil from oil-in-water emulsions. We find evidence for coalescence of oil droplets on the surface of and formation of oil channels within the LIM. Using image analysis, we find that the rate at which oil channels are formed within the membrane and the number of channels ultimately govern the permeate flux of oil through the LIMs. Oil concentration in the feed affects the rate of coalescence of oil on the surface of the LIM, which, in turn, affects the channel formation dynamics. The channel formation dynamics also depend on the viscosity of the infused liquid and the operating pressure. A higher affinity to the pore wall for infused liquid than permeating liquid is essential to antifouling behavior. Overall, this work offers insight into the selective permeation of a dispersed liquid phase through a LIM.
</summary>
<dc:date>2023-08-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shape-Stable Composites of Electrospun Nonwoven Mats and Shear-Thickening Fluids</title>
<link href="https://hdl.handle.net/1721.1/165486" rel="alternate"/>
<author>
<name>Hao, Junli</name>
</author>
<author>
<name>Ding, Jie</name>
</author>
<author>
<name>Rutledge, Gregory C</name>
</author>
<id>https://hdl.handle.net/1721.1/165486</id>
<updated>2026-04-18T03:07:19Z</updated>
<published>2022-02-01T00:00:00Z</published>
<summary type="text">Shape-Stable Composites of Electrospun Nonwoven Mats and Shear-Thickening Fluids
Hao, Junli; Ding, Jie; Rutledge, Gregory C
To improve the flexibility of the fabric stacks used in protective clothing, shear-thickening fluids (STFs) have previously been incorporated into woven microfiber fabrics to enhance their impact resistance. However, the microfiber-STF composites can exhibit loss of the STF from the composite over time due to the large interstitial spaces between fibers, resulting in limited long-term shape stability. In this study, nonwoven mats of electrospun ultrafine fibers (UFFs) were used in place of woven microfiber fabrics to improve the STF retention within the fiber-STF composites by taking advantage of high specific surface area, small pore size, and large capillary force. The UFF-STF composite, comprising an electrospun polyamide (PA 6,6) UFF mat and a fumed silica (FS) STF, exhibited excellent shape stability with high breakthrough pressure and improved STF retention compared to composites based on conventional microfiber fabrics. The mechanical response of the composite is shown to depend on the rate of deformation. At strain rates lower than the shear-thickening threshold of the STF, the introduction of STF resulted in no stiffening or strengthening of fiber mats, allowing the composite to remain flexible. At high deformation rates above the onset of shear thickening, the incorporation of STF improved both the elasticity and the viscosity of the material. In addition, the shape stability and the mechanical properties of the composite were influenced by the STF viscosity and the UFF morphology. STF with high particle loading and UFF with small fiber diameter resulted in a more pronounced enhancement to membrane performance.
</summary>
<dc:date>2022-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>MIT Faculty Newsletter Vol. XXXVIII No. 3, November/December 2025</title>
<link href="https://hdl.handle.net/1721.1/165485" rel="alternate"/>
<author>
<name>MIT Faculty Newsletter</name>
</author>
<id>https://hdl.handle.net/1721.1/165485</id>
<updated>2026-04-18T03:01:12Z</updated>
<published>2025-12-01T00:00:00Z</published>
<summary type="text">MIT Faculty Newsletter Vol. XXXVIII No. 3, November/December 2025
MIT Faculty Newsletter
</summary>
<dc:date>2025-12-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>MIT Faculty Newsletter Vol. XXXVIII No. 2, October 2025: Special Edition</title>
<link href="https://hdl.handle.net/1721.1/165484" rel="alternate"/>
<author>
<name>MIT Faculty Newsletter</name>
</author>
<id>https://hdl.handle.net/1721.1/165484</id>
<updated>2026-04-18T03:01:04Z</updated>
<published>2025-10-01T00:00:00Z</published>
<summary type="text">MIT Faculty Newsletter Vol. XXXVIII No. 2, October 2025: Special Edition
MIT Faculty Newsletter
</summary>
<dc:date>2025-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>MIT Faculty Newsletter Vol. XXXVIII No. 1, September/October 2025</title>
<link href="https://hdl.handle.net/1721.1/165483" rel="alternate"/>
<author>
<name>MIT Faculty Newsletter</name>
</author>
<id>https://hdl.handle.net/1721.1/165483</id>
<updated>2026-04-18T03:01:11Z</updated>
<published>2025-10-01T00:00:00Z</published>
<summary type="text">MIT Faculty Newsletter Vol. XXXVIII No. 1, September/October 2025
MIT Faculty Newsletter
</summary>
<dc:date>2025-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>MIT Faculty Newsletter Vol. XXXVII No. 5, May/June 2025</title>
<link href="https://hdl.handle.net/1721.1/165482" rel="alternate"/>
<author>
<name>MIT Faculty Newsletter</name>
</author>
<id>https://hdl.handle.net/1721.1/165482</id>
<updated>2026-04-18T03:01:14Z</updated>
<published>2025-06-01T00:00:00Z</published>
<summary type="text">MIT Faculty Newsletter Vol. XXXVII No. 5, May/June 2025
MIT Faculty Newsletter
</summary>
<dc:date>2025-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Propagation in the Drought Cascade: Observational Analysis Over the Continental US</title>
<link href="https://hdl.handle.net/1721.1/165481" rel="alternate"/>
<author>
<name>Entekhabi, Dara</name>
</author>
<id>https://hdl.handle.net/1721.1/165481</id>
<updated>2026-04-17T03:06:28Z</updated>
<published>2023-08-20T00:00:00Z</published>
<summary type="text">Propagation in the Drought Cascade: Observational Analysis Over the Continental US
Entekhabi, Dara
Persistent deficits in meteorological, hydrological and ecological variables define different types of drought that are often linked together in a cascade. The drought cascade is an emergent phenomenon in the climatic system. A quantitative evaluation of the drought cascade based on observations is both a rigorous test of how different components of numerical Earth System models interact with one‐another and a useful tool for practitioners concerned with drought impacts on water resource and ecosystem services. In this study the drought cascade is characterized over the continental US using remote sensing data and in situ observations. Remote sensing fields of coincident vegetation photosynthesis and above‐ground biomass anomalies are introduced into the cascade to assess the role of the terrestrial biosphere within the cascade. The propagation of the diverse drought types, in terms of amplitude‐dampening and phase‐delays, are quantified. It is shown that woody and herbaceous vegetation have contrasting responses to prolonged soil moisture deficit that is traceable to access and storage of water as well as the dual effects of water‐ and light‐limitation. The observations also show that prolonged precipitation deficit in itself is not adequate to trigger the intense soil moisture and vegetation stress responses and that excessive atmospheric evaporative demand needs to be coincident with the precipitation anomalies.
</summary>
<dc:date>2023-08-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Land Surfaces at the Tipping‐Point for Water and Energy Balance Coupling</title>
<link href="https://hdl.handle.net/1721.1/165480" rel="alternate"/>
<author>
<name>Dong, Jianzhi</name>
</author>
<author>
<name>Akbar, Ruzbeh</name>
</author>
<author>
<name>Feldman, Andrew F</name>
</author>
<author>
<name>Gianotti, Daniel Short</name>
</author>
<author>
<name>Entekhabi, Dara</name>
</author>
<id>https://hdl.handle.net/1721.1/165480</id>
<updated>2026-04-17T03:06:45Z</updated>
<published>2023-02-10T00:00:00Z</published>
<summary type="text">Land Surfaces at the Tipping‐Point for Water and Energy Balance Coupling
Dong, Jianzhi; Akbar, Ruzbeh; Feldman, Andrew F; Gianotti, Daniel Short; Entekhabi, Dara
The surface water and energy balances can be coupled or uncoupled depending on whether the evaporation regime is water‐limited or energy‐limited. As the landscape loses soil moisture during drydowns, a transition between the regimes may occur, which signifies a nonlinear change in water‐energy‐carbon coupling. Regions that switch often between these two regimes, that is, are dominated by neither regime, are particularly vulnerable to climate variability and change. To robustly identify these tipping points, we identify drydown events based on global soil moisture data sets from remote sensing. The event identification does not rely on precipitation information and is robust with respect to measurement noise. Then, the soil moisture thresholds delineating the evaporation regime transitions are determined by Sequential Monte Carlo Sampling and a two‐stage parametrization strategy. Based on the estimated soil moisture thresholds across the globe, we estimate observation‐based water availability indices which quantify the nonlinear controls of soil moisture on evaporation. This framework is tested and applied globally using Soil Moisture Active Passive soil moisture retrievals. Combined with a new tippling‐point metric that describes the frequency of evaporation regime transitions, we identify regions that switch often between different evaporation regimes at the global scale. Given unit shifts in soil moisture, these regions will experience the most change in how their surface water and energy are coupled.
</summary>
<dc:date>2023-02-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Experimental Investigations of Fracture Deformation, Flow, and Transport Using a Pressure‐Controlled Hele‐Shaw Cell and Digital Fabrication</title>
<link href="https://hdl.handle.net/1721.1/165479" rel="alternate"/>
<author>
<name>Villamor‐Lora, Rafael</name>
</author>
<author>
<name>Germaine, John T</name>
</author>
<author>
<name>Einstein, Herbert H</name>
</author>
<id>https://hdl.handle.net/1721.1/165479</id>
<updated>2026-04-17T03:07:12Z</updated>
<published>2023-03-02T00:00:00Z</published>
<summary type="text">Experimental Investigations of Fracture Deformation, Flow, and Transport Using a Pressure‐Controlled Hele‐Shaw Cell and Digital Fabrication
Villamor‐Lora, Rafael; Germaine, John T; Einstein, Herbert H
In this paper we present a novel pressure‐controlled Hele‐Shaw cell to investigate different physical processes in rough fractures using 3D‐printed rock analogs. Our system can measure high‐resolution fracture aperture and tracer concentration maps under relevant field stress conditions. Using a series of hydraulic and visual measurements, combined with numerical simulations, we investigate the evolving fracture geometry characteristics, pressure‐dependent hydraulic transmissivity, flow channeling, and the nature of mass transport as a function of normal stress. Our experimental results show that as the fracture closes and deforms under increasing normal loading: (a) the contact areas grow in number and size; (b) the flow paths become more focused and tortuous; and (c) the transport dynamics of conservative tracers evolve toward a higher dispersive regime. Moreover, under the applied experimental conditions, we observed excellent agreement between the simulated‐ and the experimentally measured‐hydraulic behavior.
</summary>
<dc:date>2023-03-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modeling the Production of Heinrich Layers With a Sediment‐Enabled Iceberg Model</title>
<link href="https://hdl.handle.net/1721.1/165478" rel="alternate"/>
<author>
<name>Fendrock, Michaela</name>
</author>
<author>
<name>Condron, Alan</name>
</author>
<author>
<name>McGee, David</name>
</author>
<id>https://hdl.handle.net/1721.1/165478</id>
<updated>2026-04-17T03:05:46Z</updated>
<published>2023-05-19T00:00:00Z</published>
<summary type="text">Modeling the Production of Heinrich Layers With a Sediment‐Enabled Iceberg Model
Fendrock, Michaela; Condron, Alan; McGee, David
In the North Atlantic, relatively coarse grained sediments can be found periodically throughout sediment cores spanning the Last Glacial Period. These sediments were rafted by icebergs released from the Laurentide Ice Sheet (LIS) in so‐called Heinrich Events. These “Heinrich Layers” coincide with records of global climate change, suggesting that the impact of these events was propagated beyond the North Atlantic. In order to best understand the climate context and significance of Heinrich Events, it is important to constrain the mechanism for their release from the LIS and the nature of the ice sheet itself. One approach for investigating the source of Heinrich Events is to understand the sediment load of icebergs involved, information that would inform interpretations of how those icebergs were produced. By simulating Heinrich Events in a high resolution global climate model (20–40 times the resolution of previous studies), this work investigates the processes involved in the deposition of Heinrich Layers in the North Atlantic. In these simulations, the same volume of sediment is distributed differently through the same volume of icebergs, producing profoundly different sediment records. Due to the high resolution of the model, these simulated sedimentary layers can be inspected in great detail, revealing nuances of the deposit. Only when sediment is distributed throughout the entire iceberg does the model produce a sediment pattern in agreement with observations, yet icebergs with this sediment distribution are not observed in the modern‐day.
</summary>
<dc:date>2023-05-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evaluating the Drivers of Quaternary Dust Fluxes to the Western North Pacific: East Asian Dustiness and Northern Hemisphere Gustiness</title>
<link href="https://hdl.handle.net/1721.1/165477" rel="alternate"/>
<author>
<name>Abell, Jordan T</name>
</author>
<author>
<name>Winckler, Gisela</name>
</author>
<author>
<name>Pullen, Alex</name>
</author>
<author>
<name>Kinsley, Christopher W</name>
</author>
<author>
<name>Kapp, Paul A</name>
</author>
<author>
<name>Middleton, Jennifer L</name>
</author>
<author>
<name>Pavia, Frank J</name>
</author>
<author>
<name>McGee, David</name>
</author>
<author>
<name>Ford, Heather L</name>
</author>
<author>
<name>Raymo, Maureen E</name>
</author>
<id>https://hdl.handle.net/1721.1/165477</id>
<updated>2026-05-08T03:13:05Z</updated>
<published>2023-08-18T00:00:00Z</published>
<summary type="text">Evaluating the Drivers of Quaternary Dust Fluxes to the Western North Pacific: East Asian Dustiness and Northern Hemisphere Gustiness
Abell, Jordan T; Winckler, Gisela; Pullen, Alex; Kinsley, Christopher W; Kapp, Paul A; Middleton, Jennifer L; Pavia, Frank J; McGee, David; Ford, Heather L; Raymo, Maureen E
Quantifying variability in, and identifying the mechanisms behind, East Asian dust production and transport across the last several million years is essential for constraining future dust emissions and deposition. Our current understanding of East Asian dust dynamics through the Quaternary is primarily limited to low‐resolution records from the North Pacific Ocean, those from the Chinese Loess Plateau (CLP), and paleoenvironmental reconstructions from arid basins. All are susceptible to sediment winnowing and focusing as well as input of poorly constrained or unidentified non‐dust detrital material. To avoid these limitations, we examine high‐resolution, constant flux proxy‐derived dust fluxes from the North Pacific and find evidence for higher glacial dust fluxes in the late Pliocene‐early Pleistocene compared to the late Pleistocene‐Holocene. Our results suggest decreasing dust transported to the mid‐latitude North Pacific Ocean from eastern Asia across the Quaternary. This observation is ostensibly at odds with previous dust records from marine sediments and the CLP, and with the perception of higher East Asian dust production and transport during the late Pleistocene associated with the amplification of glaciations. We provide three possible scenarios to describe the ∼2,700‐ky evolution of eastern Asia glacial dust dynamics, and discuss them in the context of sediment production, availability, and atmospheric circulation. Our data and proposed driving mechanisms not only raise questions about the framework typically used to interpret dust archives from East Asia and the North Pacific Ocean, but also provide a roadmap for hypothesis testing and future work necessary to produce better‐constrained records of paleo‐dust fluxes.
</summary>
<dc:date>2023-08-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Capturing Equatorial Pacific Variability With Multivariate Sr‐U Coral Thermometry</title>
<link href="https://hdl.handle.net/1721.1/165476" rel="alternate"/>
<author>
<name>Mollica, NR</name>
</author>
<author>
<name>Cohen, AL</name>
</author>
<author>
<name>Horton, F</name>
</author>
<author>
<name>Oppo, DW</name>
</author>
<author>
<name>Solow, AS</name>
</author>
<author>
<name>McGee, D</name>
</author>
<id>https://hdl.handle.net/1721.1/165476</id>
<updated>2026-05-08T03:14:18Z</updated>
<published>2023-09-27T00:00:00Z</published>
<summary type="text">Capturing Equatorial Pacific Variability With Multivariate Sr‐U Coral Thermometry
Mollica, NR; Cohen, AL; Horton, F; Oppo, DW; Solow, AS; McGee, D
Sr-U, a coral-based paleothermometer, corrects for the effects of Rayleigh Fractionation on Sr/Ca by regressing multiple, paired U/Ca and Sr/Ca values. Prior applications of Sr-U captured mean annual sea surface temperatures (SSTs), inter-annual variability, and long-term trends. However, because many Sr/Ca-U/Ca pairs are needed for a single Sr-U value as originally formulated, the temporal resolution of the proxy is typically limited to 1 year. Here, we address this limitation by applying laser ablation inductively coupled plasma mass spectrometry (LA-ICPMS) to three Porites colonies from Jarvis and Nikumaroro Islands in the central equatorial Pacific (CEP), generating ∼25 Sr/Ca-U/Ca pairs per month of skeletal growth. Both Sr/Ca and U/Ca vary significantly over small (sub-mm) length scales and support the calculation of Sr-U values using the original regression method. Over the represented temperature range of 24–31°C, the Sr/Ca-U/Ca-SST relationships are nonlinear, a finding consistent with predictions of the Rayleigh model. To reflect this non-linearity, we developed a calibration using multivariate nonlinear regression. The multivariate, three-coral calibration was applied to 20 years of monthly resolved Sr/Ca and U/Ca of a coral interval not included in the calibration, yielding RMSE = 0.73°C and r2 = 0.85 (p &lt; 0.05; df = 256). The multivariate calibration performed significantly better than Sr/Ca alone (r2 = 0.28). Applying the new calibration to a subfossil Porites from Kiritimati Atoll, CEP (2200 Before Present) yields equivalent phase and amplitude of interannual variability, but water temperatures ∼1.6°C cooler than they are in this region today.
</summary>
<dc:date>2023-09-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Flux‐Differencing Discontinuous Galerkin Method Applied to an Idealized Fully Compressible Nonhydrostatic Dry Atmosphere</title>
<link href="https://hdl.handle.net/1721.1/165475" rel="alternate"/>
<author>
<name>Souza, AN</name>
</author>
<author>
<name>He, J</name>
</author>
<author>
<name>Bischoff, T</name>
</author>
<author>
<name>Waruszewski, M</name>
</author>
<author>
<name>Novak, L</name>
</author>
<author>
<name>Barra, V</name>
</author>
<author>
<name>Gibson, T</name>
</author>
<author>
<name>Sridhar, A</name>
</author>
<author>
<name>Kandala, S</name>
</author>
<author>
<name>Byrne, S</name>
</author>
<author>
<name>Wilcox, LC</name>
</author>
<author>
<name>Kozdon, J</name>
</author>
<author>
<name>Giraldo, FX</name>
</author>
<author>
<name>Knoth, O</name>
</author>
<author>
<name>Marshall, J</name>
</author>
<author>
<name>Ferrari, R</name>
</author>
<author>
<name>Schneider, T</name>
</author>
<id>https://hdl.handle.net/1721.1/165475</id>
<updated>2026-04-17T03:07:39Z</updated>
<published>2023-04-23T00:00:00Z</published>
<summary type="text">The Flux‐Differencing Discontinuous Galerkin Method Applied to an Idealized Fully Compressible Nonhydrostatic Dry Atmosphere
Souza, AN; He, J; Bischoff, T; Waruszewski, M; Novak, L; Barra, V; Gibson, T; Sridhar, A; Kandala, S; Byrne, S; Wilcox, LC; Kozdon, J; Giraldo, FX; Knoth, O; Marshall, J; Ferrari, R; Schneider, T
Dynamical cores used to study the circulation of the atmosphere employ various numerical methods ranging from finite-volume, spectral element, global spectral, and hybrid methods. In this work, we explore the use of Flux-Differencing Discontinuous Galerkin (FDDG) methods to simulate a fully compressible dry atmosphere at various resolutions. We show that the method offers a judicious compromise between high-order accuracy and stability for large-eddy simulations and simulations of the atmospheric general circulation. In particular, filters, divergence damping, diffusion, hyperdiffusion, or sponge-layers are not required to ensure stability; only the numerical dissipation naturally afforded by FDDG is necessary. We apply the method to the simulation of dry convection in an atmospheric boundary layer and in a global atmospheric dynamical core in the standard benchmark of Held and Suarez (1994, https://doi.org/10.1175/1520-0477(1994)075〈1825:apftio〉2.0.co;2).
</summary>
<dc:date>2023-04-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>An optimal transport approach to estimating causal effects via nonlinear difference-in-differences</title>
<link href="https://hdl.handle.net/1721.1/165474" rel="alternate"/>
<author>
<name>Torous, William</name>
</author>
<author>
<name>Gunsilius, Florian</name>
</author>
<author>
<name>Rigollet, Philippe</name>
</author>
<id>https://hdl.handle.net/1721.1/165474</id>
<updated>2026-05-08T03:14:09Z</updated>
<published>2024-08-05T00:00:00Z</published>
<summary type="text">An optimal transport approach to estimating causal effects via nonlinear difference-in-differences
Torous, William; Gunsilius, Florian; Rigollet, Philippe
We propose a nonlinear difference-in-differences (DiD) method to estimate multivariate counterfactual distributions in classical treatment and control study designs with observational data. Our approach sheds a new light on existing approaches like the changes-in-changes estimator and the classical semiparametric DiD estimator, and it also generalizes them to settings with multivariate heterogeneity in the outcomes. The main benefit of this extension is that it allows for arbitrary dependence between the coordinates of vector potential outcomes and includes higher-dimensional unobservables, something that existing methods cannot provide in general. We demonstrate its utility on both synthetic and real data. In particular, we revisit the classical Card &amp; Krueger dataset, which reports fast food restaurant employment before and after a minimum wage increase. A reanalysis with our methodology suggests that these restaurants substitute full-time labor with part-time labor on aggregate in response to a minimum wage increase. This treatment effect requires estimation of the multivariate counterfactual distribution, an object beyond the scope of classical causal estimators previously applied to this data.
</summary>
<dc:date>2024-08-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Method for Estimating Global Subgrid‐Scale Orographic Gravity‐Wave Temperature Perturbations in Chemistry‐Climate Models</title>
<link href="https://hdl.handle.net/1721.1/165473" rel="alternate"/>
<author>
<name>Weimer, M</name>
</author>
<author>
<name>Wilka, C</name>
</author>
<author>
<name>Kinnison, DE</name>
</author>
<author>
<name>Garcia, RR</name>
</author>
<author>
<name>Bacmeister, JT</name>
</author>
<author>
<name>Alexander, MJ</name>
</author>
<author>
<name>Dörnbrack, A</name>
</author>
<author>
<name>Solomon, S</name>
</author>
<id>https://hdl.handle.net/1721.1/165473</id>
<updated>2026-04-17T03:07:32Z</updated>
<published>2023-08-31T00:00:00Z</published>
<summary type="text">A Method for Estimating Global Subgrid‐Scale Orographic Gravity‐Wave Temperature Perturbations in Chemistry‐Climate Models
Weimer, M; Wilka, C; Kinnison, DE; Garcia, RR; Bacmeister, JT; Alexander, MJ; Dörnbrack, A; Solomon, S
Many chemical processes depend non-linearly on temperature. Gravity-wave-induced temperature perturbations have been shown to affect atmospheric chemistry, but accounting for this process in chemistry-climate models has been a challenge because many gravity waves have scales smaller than the typical model resolution. Here, we present a method to account for subgrid-scale orographic gravity-wave-induced temperature perturbations on the global scale for the Whole Atmosphere Community Climate Model. Temperature perturbation amplitudes urn:x-wiley:19422466:media:jame21928:jame21928-math-0001 consistent with the model's subgrid-scale gravity wave parameterization are derived and then used as a sinusoidal temperature perturbation in the model's chemistry solver. Because of limitations in the parameterization, we explore scaling of urn:x-wiley:19422466:media:jame21928:jame21928-math-0002 between 0.6 and 1 based on comparisons to altitude-dependent urn:x-wiley:19422466:media:jame21928:jame21928-math-0003 distributions of satellite and reanalysis data, where we discuss uncertainties. We probe the impact on the chemistry from the grid-point to global scales, and show that the parameterization is able to represent mountain wave events as reported by previous literature. The gravity waves for example, lead to increased surface area densities of stratospheric aerosols. This increases chlorine activation, with impacts on the associated chemical composition. We obtain large local changes in some chemical species (e.g., active chlorine, NOx, N2O5) which are likely to be important for comparisons to airborne or satellite observations, but the changes to ozone loss are more modest. This approach enables the chemistry-climate modeling community to account for subgrid-scale gravity wave temperature perturbations interactively, consistent with the internal parameterizations and are expected to yield more realistic interactions and better representation of the chemistry.
</summary>
<dc:date>2023-08-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>New biological solutions to the many problems of our time</title>
<link href="https://hdl.handle.net/1721.1/165472" rel="alternate"/>
<author>
<name>Lauffenburger, Douglas A</name>
</author>
<author>
<name>Koeppl, Heinz</name>
</author>
<id>https://hdl.handle.net/1721.1/165472</id>
<updated>2026-05-08T03:14:12Z</updated>
<published>2024-06-25T00:00:00Z</published>
<summary type="text">New biological solutions to the many problems of our time
Lauffenburger, Douglas A; Koeppl, Heinz
Douglas A. Lauffenburger is Ford Professor of Engineering at the Massachusetts Institute of Technology (MIT). He is faculty member in the Department of Biological Engineering, which he co-founded in 1998. In an interview with Heinz Koeppl, Director of the Centre for Synthetic Biology at Technical University Darmstadt, he explains how Biological Engineering differs from traditional bioengineering, what the education program in this discipline at MIT is based on and why we need biological engineering to solve many of our current challenges from climate change to world food supplies.
</summary>
<dc:date>2024-06-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Automated Machine Learning to Evaluate the Information Content of Tropospheric Trace Gas Columns for Fine Particle Estimates Over India: A Modeling Testbed</title>
<link href="https://hdl.handle.net/1721.1/165471" rel="alternate"/>
<author>
<name>Zheng, Zhonghua</name>
</author>
<author>
<name>Fiore, Arlene M</name>
</author>
<author>
<name>Westervelt, Daniel M</name>
</author>
<author>
<name>Milly, George P</name>
</author>
<author>
<name>Goldsmith, Jeff</name>
</author>
<author>
<name>Karambelas, Alexandra</name>
</author>
<author>
<name>Curci, Gabriele</name>
</author>
<author>
<name>Randles, Cynthia A</name>
</author>
<author>
<name>Paiva, Antonio R</name>
</author>
<author>
<name>Wang, Chi</name>
</author>
<author>
<name>Wu, Qingyun</name>
</author>
<author>
<name>Dey, Sagnik</name>
</author>
<id>https://hdl.handle.net/1721.1/165471</id>
<updated>2026-04-17T03:07:52Z</updated>
<published>2023-03-05T00:00:00Z</published>
<summary type="text">Automated Machine Learning to Evaluate the Information Content of Tropospheric Trace Gas Columns for Fine Particle Estimates Over India: A Modeling Testbed
Zheng, Zhonghua; Fiore, Arlene M; Westervelt, Daniel M; Milly, George P; Goldsmith, Jeff; Karambelas, Alexandra; Curci, Gabriele; Randles, Cynthia A; Paiva, Antonio R; Wang, Chi; Wu, Qingyun; Dey, Sagnik
India is largely devoid of high-quality and reliable on-the-ground measurements of fine particulate matter (PM2.5). Ground-level PM2.5 concentrations are estimated from publicly available satellite Aerosol Optical Depth (AOD) products combined with other information. Prior research has largely overlooked the possibility of gaining additional accuracy and insights into the sources of PM using satellite retrievals of tropospheric trace gas columns. We evaluate the information content of tropospheric trace gas columns for PM2.5 estimates over India within a modeling testbed using an Automated Machine Learning (AutoML) approach, which selects from a menu of different machine learning tools based on the data set. We then quantify the relative information content of tropospheric trace gas columns, AOD, meteorological fields, and emissions for estimating PM2.5 over four Indian sub-regions on daily and monthly time scales. Our findings suggest that, regardless of the specific machine learning model assumptions, incorporating trace gas modeled columns improves PM2.5 estimates. We use the ranking scores produced from the AutoML algorithm and Spearman’s rank correlation to infer or link the possible relative importance of primary versus secondary sources of PM2.5 as a first step toward estimating particle composition. Our comparison of AutoML-derived models to selected baseline machine learning models demonstrates that AutoML is at least as good as user-chosen models. The idealized pseudo-observations (chemical-transport model simulations) used in this work lay the groundwork for applying satellite retrievals of tropospheric trace gases to estimate fine particle concentrations in India and serve to illustrate the promise of AutoML applications in atmospheric and environmental research.
</summary>
<dc:date>2023-03-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Processes Controlling Methane Emissions From a Tropical Peatland Drainage Canal</title>
<link href="https://hdl.handle.net/1721.1/165470" rel="alternate"/>
<author>
<name>Somers, Lauren D</name>
</author>
<author>
<name>Hoyt, Alison</name>
</author>
<author>
<name>Cobb, Alexander R</name>
</author>
<author>
<name>Isnin, Suhailah</name>
</author>
<author>
<name>Suhip, Muhammad Asri Akmal bin Haji</name>
</author>
<author>
<name>Sukri, Rahayu S</name>
</author>
<author>
<name>Gandois, Laure</name>
</author>
<author>
<name>Harvey, Charles</name>
</author>
<id>https://hdl.handle.net/1721.1/165470</id>
<updated>2026-04-17T03:06:46Z</updated>
<published>2023-02-05T00:00:00Z</published>
<summary type="text">Processes Controlling Methane Emissions From a Tropical Peatland Drainage Canal
Somers, Lauren D; Hoyt, Alison; Cobb, Alexander R; Isnin, Suhailah; Suhip, Muhammad Asri Akmal bin Haji; Sukri, Rahayu S; Gandois, Laure; Harvey, Charles
Most peat domes in Southeast Asia are crisscrossed by networks of drainage canals. These canals are a potentially important source of methane to the atmosphere because the groundwater that discharges into them carries high concentrations of dissolved methane that is produced within peat. In this study, we present an isotope‐enabled numerical model that simulates transport, degassing, and oxidation of methane and dissolved inorganic carbon (DIC) along a drainage canal. We then estimate methane fluxes through a 5‐km canal that crosses a disturbed, forested, but undeveloped, peat dome in Brunei Darussalam by applying this model to field data: concentrations and stable carbon isotopic ratios of both methane and dissolved inorganic carbon from both peat porewater and canal water. We estimate that approximately 70% of the methane entering the canal is oxidized within the canal, 26% is degassed to the atmosphere, and 4% is transported toward the ocean, under low to moderate flow conditions. The flux of methane to the atmosphere is lowest at the maximum elevation of the canal, where flow is stagnant and methane concentrations are highest. Downstream, as flow velocity increases, methane emissions plateau even as methane concentrations decrease. The resulting methane emissions from the canal are large compared to emissions from the peat surface and vegetation on a per‐area basis. However, since the canal covers only a small portion of the catchment area, the canal may be a substantial but not dominant source of methane from the peatland.
</summary>
<dc:date>2023-02-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Future trends in stratosphere-to-troposphere transport in CCMI models</title>
<link href="https://hdl.handle.net/1721.1/165469" rel="alternate"/>
<author>
<name>Abalos, Marta</name>
</author>
<author>
<name>Orbe, Clara</name>
</author>
<author>
<name>Kinnison, Douglas E</name>
</author>
<author>
<name>Plummer, David</name>
</author>
<author>
<name>Oman, Luke D</name>
</author>
<author>
<name>Jöckel, Patrick</name>
</author>
<author>
<name>Morgenstern, Olaf</name>
</author>
<author>
<name>Garcia, Rolando R</name>
</author>
<author>
<name>Zeng, Guang</name>
</author>
<author>
<name>Stone, Kane A</name>
</author>
<author>
<name>Dameris, Martin</name>
</author>
<id>https://hdl.handle.net/1721.1/165469</id>
<updated>2026-05-08T03:13:03Z</updated>
<published>2020-06-11T00:00:00Z</published>
<summary type="text">Future trends in stratosphere-to-troposphere transport in CCMI models
Abalos, Marta; Orbe, Clara; Kinnison, Douglas E; Plummer, David; Oman, Luke D; Jöckel, Patrick; Morgenstern, Olaf; Garcia, Rolando R; Zeng, Guang; Stone, Kane A; Dameris, Martin
One of the key questions in the air quality and climate sciences is how tropospheric ozone concentrations will change in the future. This will depend on two factors: changes in stratosphere-to-troposphere transport (STT) and changes in tropospheric chemistry. Here we aim to identify robust changes in STT using simulations from the Chemistry Climate Model Initiative (CCMI) under a common climate change scenario (RCP6.0). We use two idealized stratospheric tracers to isolate changes in transport: stratospheric ozone (O3S), which is exactly like ozone but has no chemical sources in the troposphere, and st80, a passive tracer with fixed volume mixing ratio in the stratosphere. We find a robust increase in the tropospheric columns of these two tracers across the models. In particular, stratospheric ozone in the troposphere is projected to increase 10 %–16 % by the end of the 21st century in the RCP6.0 scenario. Future STT is enhanced in the subtropics due to the strengthening of the shallow branch of the Brewer–Dobson circulation (BDC) in the lower stratosphere and of the upper part of the Hadley cell in the upper troposphere. The acceleration of the deep branch of the BDC in the Northern Hemisphere (NH) and changes in eddy transport contribute to increased STT at high latitudes. These STT trends are caused by greenhouse gas (GHG) increases, while phasing out of ozone-depleting substances (ODS) does not lead to robust transport changes. Nevertheless, the decline of ODS increases the reservoir of ozone in the lower stratosphere, which results in enhanced STT of O3S at middle and high latitudes. A higher emission scenario (RCP8.5) produces stronger STT trends, with increases in tropospheric column O3S more than 3 times larger than those in the RCP6.0 scenario by the end of the 21st century.
</summary>
<dc:date>2020-06-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Vegetation‐Driven Seasonal Sediment Dynamics in a Freshwater Marsh of the Mississippi River Delta</title>
<link href="https://hdl.handle.net/1721.1/165468" rel="alternate"/>
<author>
<name>Beltrán‐Burgos, M</name>
</author>
<author>
<name>Esposito, CR</name>
</author>
<author>
<name>Nepf, HM</name>
</author>
<author>
<name>Baustian, MM</name>
</author>
<author>
<name>Di Leonardo, DR</name>
</author>
<id>https://hdl.handle.net/1721.1/165468</id>
<updated>2026-04-17T03:08:00Z</updated>
<published>2023-03-23T00:00:00Z</published>
<summary type="text">Vegetation‐Driven Seasonal Sediment Dynamics in a Freshwater Marsh of the Mississippi River Delta
Beltrán‐Burgos, M; Esposito, CR; Nepf, HM; Baustian, MM; Di Leonardo, DR
Deltaic wetlands are critically important coastal environments, upon which hundreds of millions of people depend. Managing and preserving them in the face of sea level rise will be a challenging task over the next century that will require land managers to devise restoration strategies that maximize the delivery and storage of mineral sediments, and to apportion limited sediment resources to priority locations. We collected a unique field data set characterizing sediment delivery to, and retention in, a deltaic wetland throughout a period of rapidly changing emergent and submerged vegetation conditions in the spring of 2019. Our results demonstrate that wetland deposition is extremely sensitive to the timing of the flood pulse with respect to vegetation conditions, and that vegetation alone can adjust sediment delivery and retention by one or more orders of magnitude over a period of weeks. In planning for wetland management operations, it will be critical for managers to assess these rapidly changing conditions as they influence project success.
</summary>
<dc:date>2023-03-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Erosional Signature of Drainage Divide Motion Along the Blue Ridge Escarpment</title>
<link href="https://hdl.handle.net/1721.1/165467" rel="alternate"/>
<author>
<name>Stokes, Maya F</name>
</author>
<author>
<name>Larsen, Isaac J</name>
</author>
<author>
<name>Goldberg, Samuel L</name>
</author>
<author>
<name>McCoy, Scott W</name>
</author>
<author>
<name>Prince, Philip P</name>
</author>
<author>
<name>Perron, J Taylor</name>
</author>
<id>https://hdl.handle.net/1721.1/165467</id>
<updated>2026-05-08T03:13:12Z</updated>
<published>2022-12-14T00:00:00Z</published>
<summary type="text">The Erosional Signature of Drainage Divide Motion Along the Blue Ridge Escarpment
Stokes, Maya F; Larsen, Isaac J; Goldberg, Samuel L; McCoy, Scott W; Prince, Philip P; Perron, J Taylor
The planform rearrangement of river basins is recognized as an important process for landscape evolution. The boundaries of river basins can shift either through gradual drainage divide migration or discrete river captures, but the methods for identifying these processes often rely on topographic evidence that remains otherwise untested. Moreover, efforts to understand the relative importance of either process are hampered by a lack of age constraints on river captures. We use 10Be-derived erosion rates to test whether, and how, divide motion is occurring at three locations along the Blue Ridge Escarpment in the Appalachian Mountains. In the Pee Dee River basin, we find that the escarpment is migrating inland up to 45 m/Myr, consistent with topographic evidence for gradual divide migration. In the Dan River basin, erosion rates support the topographic evidence for river capture, and we use a forward model of river incision to estimate that the capture likely occurred in the past 12.5 Myr. In the South Fork Roanoke River basin, where the presence of a knickzone has been interpreted as evidence that a river capture initiated a pulse of faster erosion, we instead measure nearly uniform tributary erosion rates above and within the mainstem knickzone. Simulations show that river incision into a more erodible layer of rock, with or without a river capture, could produce the observed topography and erosion rates in the South Fork Roanoke River. Our results show how multiple lines of evidence can illuminate the rates and mechanisms of river basin reorganization.
</summary>
<dc:date>2022-12-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>The significant impact of aerosol vertical structure on lower atmosphere stability and its critical role in aerosol–planetary boundary layer (PBL) interactions</title>
<link href="https://hdl.handle.net/1721.1/165466" rel="alternate"/>
<author>
<name>Su, Tianning</name>
</author>
<author>
<name>Li, Zhanqing</name>
</author>
<author>
<name>Li, Chengcai</name>
</author>
<author>
<name>Li, Jing</name>
</author>
<author>
<name>Han, Wenchao</name>
</author>
<author>
<name>Shen, Chuanyang</name>
</author>
<author>
<name>Tan, Wangshu</name>
</author>
<author>
<name>Wei, Jing</name>
</author>
<author>
<name>Guo, Jianping</name>
</author>
<id>https://hdl.handle.net/1721.1/165466</id>
<updated>2026-05-08T03:14:11Z</updated>
<published>2020-03-27T00:00:00Z</published>
<summary type="text">The significant impact of aerosol vertical structure on lower atmosphere stability and its critical role in aerosol–planetary boundary layer (PBL) interactions
Su, Tianning; Li, Zhanqing; Li, Chengcai; Li, Jing; Han, Wenchao; Shen, Chuanyang; Tan, Wangshu; Wei, Jing; Guo, Jianping
The aerosol–planetary boundary layer (PBL) interaction was proposed as an important mechanism to stabilize the atmosphere and exacerbate surface air pollution. Despite the tremendous progress made in understanding this process, its magnitude and significance still have large uncertainties and vary largely with aerosol distribution and meteorological conditions. In this study, we focus on the role of aerosol vertical distribution in thermodynamic stability and PBL development by jointly using micropulse lidar, sun photometer, and radiosonde measurements taken in Beijing. Despite the complexity of aerosol vertical distributions, cloud-free aerosol structures can be largely classified into three types: well-mixed, decreasing with height, and inverse structures. The aerosol–PBL relationship and diurnal cycles of the PBL height and PM2.5 associated with these different aerosol vertical structures show distinct characteristics. The vertical distribution of aerosol radiative forcing differs drastically among the three types, with strong heating in the lower, middle, and upper PBL, respectively. Such a discrepancy in the heating rate affects the atmospheric buoyancy and stability differently in the three distinct aerosol structures. Absorbing aerosols have a weaker effect of stabilizing the lower atmosphere under the decreasing structure than under the inverse structure. As a result, the aerosol–PBL interaction can be strengthened by the inverse aerosol structure and can be potentially neutralized by the decreasing structure. Moreover, aerosols can both enhance and suppress PBL stability, leading to both positive and negative feedback loops. This study attempts to improve our understanding of the aerosol–PBL interaction, showing the importance of the observational constraint of aerosol vertical distribution for simulating this interaction and consequent feedbacks.
</summary>
<dc:date>2020-03-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>The impacts of biomass burning activities on convective systems over the Maritime Continent</title>
<link href="https://hdl.handle.net/1721.1/165465" rel="alternate"/>
<author>
<name>Lee, Hsiang-He</name>
</author>
<author>
<name>Wang, Chien</name>
</author>
<id>https://hdl.handle.net/1721.1/165465</id>
<updated>2026-04-17T03:07:15Z</updated>
<published>2020-03-02T00:00:00Z</published>
<summary type="text">The impacts of biomass burning activities on convective systems over the Maritime Continent
Lee, Hsiang-He; Wang, Chien
Convective precipitation associated with Sumatra squall lines and diurnal rainfall over Borneo is an important weather feature of the Maritime Continent in Southeast Asia. Over the past few decades, biomass burning activities have been widespread during summertime over this region, producing massive fire aerosols. These additional aerosols, when brought into the atmosphere, besides influencing the local radiation budget through directly scattering and absorbing sunlight, can also act as cloud condensation nuclei or ice nuclei to alter convective clouds and precipitation over the Maritime Continent via so-called aerosol indirect effects. Based on 4-month simulations with or without biomass burning aerosols, conducted using the Weather Research and Forecasting model coupled with a chemistry module (WRF-Chem), we have investigated the aerosol–cloud interactions associated with biomass burning aerosols over the Maritime Continent. Results from selected cases of convective events have specifically shown the significant impact of fire aerosols on weak convections by their increasing of the quantities of hydrometeors and rainfall in both the Sumatra and Borneo regions. Statistical analysis over the fire season also suggests that fire aerosols have impacts on the nocturnal convections associated with the local anticyclonic circulation in western Borneo and weaken nocturnal rainfall intensity by about 9 %. Such an effect is likely to have come from the near-surface heating due to absorbing aerosols emitted from fires, which could weaken land breezes and thus the convergence of anticyclonic circulation.
</summary>
<dc:date>2020-03-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>AI to Identify Strain-Sensitive Regions of the Optic Nerve Head Linked to Functional Loss in Glaucoma</title>
<link href="https://hdl.handle.net/1721.1/165464" rel="alternate"/>
<author>
<name>Chuangsuwanich, Thanadet</name>
</author>
<author>
<name>Nongpiur, Monisha E</name>
</author>
<author>
<name>Braeu, Fabian A</name>
</author>
<author>
<name>Prasad, Shimna Clara</name>
</author>
<author>
<name>Tun, Tin A</name>
</author>
<author>
<name>Thiéry, Alexandre</name>
</author>
<author>
<name>Perera, Shamira</name>
</author>
<author>
<name>Ho, Ching Lin</name>
</author>
<author>
<name>Buist, Martin</name>
</author>
<author>
<name>Barbastathis, George</name>
</author>
<author>
<name>Aung, Tin</name>
</author>
<author>
<name>Girard, Michaël JA</name>
</author>
<id>https://hdl.handle.net/1721.1/165464</id>
<updated>2026-04-17T03:07:08Z</updated>
<published>2026-02-11T00:00:00Z</published>
<summary type="text">AI to Identify Strain-Sensitive Regions of the Optic Nerve Head Linked to Functional Loss in Glaucoma
Chuangsuwanich, Thanadet; Nongpiur, Monisha E; Braeu, Fabian A; Prasad, Shimna Clara; Tun, Tin A; Thiéry, Alexandre; Perera, Shamira; Ho, Ching Lin; Buist, Martin; Barbastathis, George; Aung, Tin; Girard, Michaël JA
Purpose: The purposes of this study were to assess whether optic nerve head (ONH) biomechanics, quantified by tissue strain, improves classification of progressive visual field (VF) loss patterns in glaucoma beyond morphology, and to use saliency maps to identify ONH regions associated with the predictions.&#13;
Methods: We recruited 249 patients with glaucoma (mean age 69 ± 5 years, 54% female patients). One eye per subject was imaged under (1) primary gaze and (2) primary gaze with IOP elevated to approximately 35 millimeters of mercury (mm Hg) via ophthalmo-dynamometry. Twelve subjects were excluded due to poor scan quality/limited lamina cribrosa (LC) visibility. Experts classified subjects into four categories based on the presence of specific visual field defects (VFDs): (1) superior nasal step (N = 26), (2) superior partial arcuate (N = 62), (3) full superior hemifield defect (N = 25), and (4) other/non-specific defects (N = 124). Automatic segmentation and digital volume correlation computed neural tissue and LC strains. Biomechanical and structural features were input to a PointNet model. Three classification tasks were performed to detect: (1) superior nasal step, (2) superior partial arcuate, and (3) full superior hemifield defect. Data were split 80/20 (train/test). Area under the curve (AUC) assessed performance. Saliency maps (an explainable artificial intelligence [XAI] technique) highlighted ONH regions most critical to classification.&#13;
Results: Models achieved AUCs of 0.77 to 0.88 across VFD classifications. The structure-only model reached an AUC of 0.83 ± 0.02 for superior arcuate defects, which significantly improved to 0.87 ± 0.02 (P &lt; 0.05) with the addition of strain information, demonstrating that ONH biomechanics enhance prediction beyond morphology. Strain-sensitive regions were localized to the inferior and inferotemporal rim, expanding with increasing severity of VF loss.&#13;
Conclusions: ONH strain enhances classification of glaucomatous VF loss patterns. The neuroretinal rim, rather than the LC, was most critical, suggesting rim strain may play a dominant role in axonal injury and functional loss.
</summary>
<dc:date>2026-02-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Intact Perceptual Interactions of Interocular Temporal Phase and Contrast Disparities in Amblyopia</title>
<link href="https://hdl.handle.net/1721.1/165463" rel="alternate"/>
<author>
<name>Kosovicheva, Anna</name>
</author>
<author>
<name>Ahmed, Zain</name>
</author>
<author>
<name>Chaudhry, Nikhil</name>
</author>
<author>
<name>Lim, Brooke</name>
</author>
<author>
<name>Bex, Peter J.</name>
</author>
<author>
<name>Wiecek, Emily K.</name>
</author>
<author>
<name>Gaier, Eric D.</name>
</author>
<id>https://hdl.handle.net/1721.1/165463</id>
<updated>2026-05-08T03:14:27Z</updated>
<published>2025-10-30T00:00:00Z</published>
<summary type="text">Intact Perceptual Interactions of Interocular Temporal Phase and Contrast Disparities in Amblyopia
Kosovicheva, Anna; Ahmed, Zain; Chaudhry, Nikhil; Lim, Brooke; Bex, Peter J.; Wiecek, Emily K.; Gaier, Eric D.
Purpose: Interocular temporal and contrast differences have been applied separately to improve binocular integration and treat amblyopia. However, the extent to which binocular integration in amblyopia can be improved by combining interocular differences in timing and contrast has yet to be tested. We evaluated how these parameters interact in individuals with amblyopia and in normally sighted controls.&#13;
&#13;
Methods: We developed an interocular flicker integration task in which a pair of dichoptic gratings flickered sinusoidally in counterphase (2 hertz [Hz], 90-degree spatial and temporal offset), producing the appearance of motion. We determined the interocular delay required for optimal integration by adding phase delays to the 90-degree phase offset (left or right eye leading, −80 degrees to +80 degrees). Delays were tested across different interocular contrast conditions: 50%-50%, 70%-30%, or 85%-15%. Amblyopic (n = 12) and control (n = 12) participants reported the perceived motion direction.&#13;
&#13;
Results: Both groups showed broad temporal tuning of flicker integration. Accuracy in the contrast-balanced condition was highest with no added phase delay, and Gaussian fits to the data showed peak performance at a negligible delay (−0.3 degrees). Across both groups, an 85%-15% contrast disparity reduced overall accuracy and shifted peak accuracy to a delay of 28.6 degrees in the higher contrast eye.&#13;
&#13;
Conclusions: Our data demonstrate that interocular temporal and contrast disparities interact similarly in normally sighted individuals and those with amblyopia. In this task, temporal delays and contrast imbalance manipulations interact predictably, such that the effects of imbalanced contrast are counteracted by a leading temporal offset for the eye with the lower contrast stimulus.
</summary>
<dc:date>2025-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evaluating Blood Flow Speed in Retinal Microaneurysms Secondary to Diabetic Retinopathy Using Variable Interscan Time Analysis OCTA</title>
<link href="https://hdl.handle.net/1721.1/165462" rel="alternate"/>
<author>
<name>Takahashi, Hiroyuki</name>
</author>
<author>
<name>Hwang, Yunchan</name>
</author>
<author>
<name>Won, Jungeun</name>
</author>
<author>
<name>Jamil, Muhammad Usman</name>
</author>
<author>
<name>Yaghy, Antonio</name>
</author>
<author>
<name>Liang, Michelle C</name>
</author>
<author>
<name>Baumal, Caroline R</name>
</author>
<author>
<name>Witkin, Andre J</name>
</author>
<author>
<name>Ohno-Matsui, Kyoko</name>
</author>
<author>
<name>Duker, Jay S</name>
</author>
<author>
<name>Fujimoto, James G</name>
</author>
<author>
<name>Waheed, Nadia K</name>
</author>
<id>https://hdl.handle.net/1721.1/165462</id>
<updated>2026-04-17T03:06:13Z</updated>
<published>2025-02-28T00:00:00Z</published>
<summary type="text">Evaluating Blood Flow Speed in Retinal Microaneurysms Secondary to Diabetic Retinopathy Using Variable Interscan Time Analysis OCTA
Takahashi, Hiroyuki; Hwang, Yunchan; Won, Jungeun; Jamil, Muhammad Usman; Yaghy, Antonio; Liang, Michelle C; Baumal, Caroline R; Witkin, Andre J; Ohno-Matsui, Kyoko; Duker, Jay S; Fujimoto, James G; Waheed, Nadia K
Purpose: To quantify the blood flow speed within retinal microaneurysms (MAs) and investigate the relationship between blood flow speed and clinical characteristics in eyes with diabetic retinopathy (DR).&#13;
Methods: Variable interscan time analysis (VISTA) quantifies blood flow speed in the vasculature by measuring how fast optical coherence tomography (OCT) angiography (OCTA) saturates for different interscan times. Macular OCTA imaging was performed in eyes with DR using a high-speed swept-source OCT prototype instrument operating at a 600-kHz A-scan rate. The presence of MAs was determined using OCT B-scans, and three-dimensional MA masks were generated. VISTA flow speed (VFS) was determined within MAs and the retinal capillary plexus (RCP). Intraluminal reflectivity, axial location within the RCP, and the presence of intraretinal fluid (IRF) around the MAs were evaluated.&#13;
Results: A total of 123 MAs were detected from 24 eyes of 20 patients with DR. Mean VFS was 1.26 ms-1 (95% confidence interval, 1.16-1.35). MAs with medium and high intraluminal reflectivity had slower VFS than those with low intraluminal reflectivity (P &lt; 0.01) and often had slower VFS than the RCP (P &lt; 0.01). Sixty-six MAs were located near IRF and had slower VFS than the other 57 MAs without surrounding IRF (1.16 ms-1 vs. 1.37 ms-1; P = 0.03).&#13;
Conclusions: VISTA OCTA can assess blood flow speed of MAs in relation to other structural features in DR. Decreased blood flow speed in MAs is correlated with the presence of IRF around MAs.&#13;
Translational Relevance: We offer a new method that quantifies the blood flow speed of MAs to study the development of diabetic macular edema.
</summary>
<dc:date>2025-02-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Simple Model for Interpreting Temperature Variability and Its Higher-Order Changes</title>
<link href="https://hdl.handle.net/1721.1/165461" rel="alternate"/>
<author>
<name>Tamarin-Brodsky, Talia</name>
</author>
<author>
<name>Hodges, Kevin</name>
</author>
<author>
<name>Hoskins, Brian J</name>
</author>
<author>
<name>Shepherd, Theodore G</name>
</author>
<id>https://hdl.handle.net/1721.1/165461</id>
<updated>2026-04-17T03:06:42Z</updated>
<published>2022-01-01T00:00:00Z</published>
<summary type="text">A Simple Model for Interpreting Temperature Variability and Its Higher-Order Changes
Tamarin-Brodsky, Talia; Hodges, Kevin; Hoskins, Brian J; Shepherd, Theodore G
Atmospheric temperature distributions are often identified with their variance, while the higher-order moments receive less attention. This can be especially misleading for extremes, which are associated with the tails of the probability density functions (PDFs), and thus depend strongly on the higher-order moments. For example, skewness is related to the asymmetry between positive and negative anomalies, while kurtosis is indicative of the “extremity” of the tails. Here we show that for near-surface atmospheric temperature, an approximate linear relationship exists between kurtosis and skewness squared. We present a simple model describing this relationship, where the total PDF is written as the sum of three Gaussians, representing small deviations from the climatological mean together with the larger-amplitude cold and warm temperature anomalies associated with synoptic systems. This model recovers the PDF structure in different regions of the world, as well as its projected response to climate change, giving a simple physical interpretation of the higher-order temperature variability changes. The kurtosis changes are found to be largely predicted by the skewness changes. Building a deeper understanding of what controls the higher-order moments of the temperature variability is crucial for understanding extreme temperature events and how they respond to climate change.
</summary>
<dc:date>2022-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Diabatic Rossby Vortex World: Finite-Amplitude Effects in Moist Cyclogenesis</title>
<link href="https://hdl.handle.net/1721.1/165460" rel="alternate"/>
<author>
<name>Kohl, Matthieu</name>
</author>
<author>
<name>O’Gorman, Paul A</name>
</author>
<id>https://hdl.handle.net/1721.1/165460</id>
<updated>2026-05-08T03:12:30Z</updated>
<published>2025-10-01T00:00:00Z</published>
<summary type="text">Diabatic Rossby Vortex World: Finite-Amplitude Effects in Moist Cyclogenesis
Kohl, Matthieu; O’Gorman, Paul A
Diabatic Rossby vortices (DRVs) are a special class of heavily precipitating extratropical cyclone in which latent heating effects play a key role. As such, their dynamics defies the classic mechanism of midlatitude storm formation and poses challenges to modeling and theoretical understanding. Here, we build on recent theoretical advances on the growth of DRV modes in small-amplitude moist instability calculations by exploring the structure of finite-amplitude DRV storms in a hierarchy of models of moist macroturbulence. Simulations of moist quasigeostrophic turbulence show a transition to a DRV-dominated flow (DRV world) when the latent heating is strong. The potential vorticity (PV) structure of the DRVs is similar to the PV structure from small-amplitude DRV modal theory. Simulations of the moist primitive equations also transition to DRV world when both the latent heating is strong and the Rossby number is sufficiently low. At high Rossby numbers, however, the PV structure of storms with strong latent heating is bottom intensified compared to DRV modal theory due to higher-order effects beyond quasigeostrophy, and the macroturbulent flow has both DRV-like storms and frontal structures. A 1D model of the vertical structure of PV is solved for different Rossby numbers and stratification profiles to reconcile the PV structures of DRVs in the simulations, small-amplitude modal theory, and observations.
</summary>
<dc:date>2025-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>RES.11-003 Climate Justice Instructional Toolkit, Fall 2023</title>
<link href="https://hdl.handle.net/1721.1/165459" rel="alternate"/>
<author>
<name>Rabe, Christopher</name>
</author>
<author>
<name>Fernandez, John</name>
</author>
<author>
<name>Meyers, Sarah</name>
</author>
<id>https://hdl.handle.net/1721.1/165459</id>
<updated>2026-04-16T17:25:17Z</updated>
<published>2023-01-01T00:00:00Z</published>
<summary type="text">RES.11-003 Climate Justice Instructional Toolkit, Fall 2023
Rabe, Christopher; Fernandez, John; Meyers, Sarah
The primary goal of these resources and programming, created as part of a larger initiative to expand climate justice education at MIT, is to provide support to faculty members and instructors across disciplines in integrating climate justice content and related instructional approaches into their courses.&#13;
&#13;
Funded by the Alumni Class Funds Grant, the Toolkit houses a wide range of climate-justice-adaptable teaching modules, a starter guide for teaching climate justice, resources for students, and climate justice data sets that can serve as supportive tools to enhance teaching content and approaches.
</summary>
<dc:date>2023-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Petrological Traverse of the Olivine Cumulate Séítah Formation at Jezero Crater, Mars: A Perspective From SuperCam Onboard Perseverance</title>
<link href="https://hdl.handle.net/1721.1/165458" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165458</id>
<updated>2026-05-07T03:13:43Z</updated>
<published>2023-05-30T00:00:00Z</published>
<summary type="text">Petrological Traverse of the Olivine Cumulate Séítah Formation at Jezero Crater, Mars: A Perspective From SuperCam Onboard Perseverance
Séítah is the stratigraphically lowest formation visited by Perseverance in the Jezero crater floor. We present the data obtained by SuperCam: texture by imagery, chemistry by Laser‐Induced Breakdown Spectroscopy, and mineralogy by Supercam Visible and Infrared reflectance and Raman spectroscopy. The Séítah formation consists of igneous, weakly altered rocks dominated by millimeter‐sized grains of olivine with the presence of low‐Ca and high‐Ca pyroxenes, and other primary minerals (e.g., plagioclase, Cr‐Fe‐Ti oxides, phosphates). Along a ∼140 m long section in Séítah, SuperCam analyses showed evidence of geochemical and mineralogical variations, from the contact with the overlying Máaz formation, going deeper in the formation. Bulk rock and olivine Mg#, grain size, olivine content increase gradually further from the contact. Along the section, olivine Mg# is not in equilibrium with the bulk rock Mg#, indicating local olivine accumulation. These observations are consistent with Séítah being the deep ultramafic member of a cumulate series derived from the fractional crystallization and slow cooling of the parent magma at depth. Possible magmatic processes and exhumation mechanisms of Séítah are discussed. Séítah rocks show some affinity with some rocks at Gusev crater, and with some Martian meteorites suggesting that such rocks are not rare on the surface of Mars. Séítah is part of the Nili Fossae regional olivine‐carbonate unit observed from orbit. Future exploration of Perseverance on the rim and outside of the crater will help determine if the observations from the crater floor can be extrapolated to the whole unit or if this unit is composed of distinct sub‐units with various origins.
</summary>
<dc:date>2023-05-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Complex Exhumation History of Jezero Crater Floor Unit and Its Implication for Mars Sample Return</title>
<link href="https://hdl.handle.net/1721.1/165457" rel="alternate"/>
<author>
<name>Quantin‐Nataf, C</name>
</author>
<author>
<name>Alwmark, S</name>
</author>
<author>
<name>Calef, FJ</name>
</author>
<author>
<name>Lasue, J</name>
</author>
<author>
<name>Kinch, K</name>
</author>
<author>
<name>Stack, KM</name>
</author>
<author>
<name>Sun, V</name>
</author>
<author>
<name>Williams, NR</name>
</author>
<author>
<name>Dehouck, E</name>
</author>
<author>
<name>Mandon, L</name>
</author>
<author>
<name>Mangold, N</name>
</author>
<author>
<name>Beyssac, O</name>
</author>
<author>
<name>Clave, E</name>
</author>
<author>
<name>Walter, SHG</name>
</author>
<author>
<name>Simon, JI</name>
</author>
<author>
<name>Annex, AM</name>
</author>
<author>
<name>Horgan, B</name>
</author>
<author>
<name>Rice, James W</name>
</author>
<author>
<name>Shuster, D</name>
</author>
<author>
<name>Cohen, B</name>
</author>
<author>
<name>Kah, L</name>
</author>
<author>
<name>Sholes, Steven</name>
</author>
<author>
<name>Weiss, BP</name>
</author>
<id>https://hdl.handle.net/1721.1/165457</id>
<updated>2026-04-16T03:06:59Z</updated>
<published>2023-06-06T00:00:00Z</published>
<summary type="text">The Complex Exhumation History of Jezero Crater Floor Unit and Its Implication for Mars Sample Return
Quantin‐Nataf, C; Alwmark, S; Calef, FJ; Lasue, J; Kinch, K; Stack, KM; Sun, V; Williams, NR; Dehouck, E; Mandon, L; Mangold, N; Beyssac, O; Clave, E; Walter, SHG; Simon, JI; Annex, AM; Horgan, B; Rice, James W; Shuster, D; Cohen, B; Kah, L; Sholes, Steven; Weiss, BP
During the first year of NASA's Mars 2020 mission, Perseverance rover has investigated the dark crater floor unit of Jezero crater and four samples of this unit have been collected. The focus of this paper is to assess the potential of these samples to calibrate the crater‐based Martian chronology. We first review the previous estimation of crater‐based model age of this unit. Then, we investigate the impact crater density distribution across the floor unit. It reveals that the crater density is heterogeneous from areas which have been exposed to the bombardment during the last 3 Ga to areas very recently exposed to bombardment. It suggests a complex history of exposure to impact cratering. We also display evidence of several remnants of deposits on the top of the dark floor unit across Jezero below which the dark floor unit may have been buried. We propose the following scenario of burying/exhumation: the dark floor unit would have been initially buried below a unit that was a few tens of meters thick. This unit then gradually eroded away due to Aeolian processes from the northeast to the west, resulting in uneven exposure to impact bombardment over 3 Ga. A cratering model reproducing this scenario confirms the feasibility of this hypothesis. Due to the complexity of its exposure history, the Jezero dark crater floor unit will require additional detailed analysis to understand how the Mars 2020 mission samples of the crater floor can be used to inform the Martian cratering chronology.
</summary>
<dc:date>2023-06-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Samples Collected From the Floor of Jezero Crater With the Mars 2020 Perseverance Rover</title>
<link href="https://hdl.handle.net/1721.1/165456" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165456</id>
<updated>2026-04-16T03:04:51Z</updated>
<published>2023-02-09T00:00:00Z</published>
<summary type="text">Samples Collected From the Floor of Jezero Crater With the Mars 2020 Perseverance Rover
The first samples collected by the Mars 2020 mission represent units exposed on the Jezero Crater floor, from the potentially oldest Séítah formation outcrops to the potentially youngest rocks of the heavily cratered Máaz formation. Surface investigations reveal landscape‐to‐microscopic textural, mineralogical, and geochemical evidence for igneous lithologies, some possibly emplaced as lava flows. The samples contain major rock‐forming minerals such as pyroxene, olivine, and feldspar, accessory minerals including oxides and phosphates, and evidence for various degrees of aqueous activity in the form of water‐soluble salt, carbonate, sulfate, iron oxide, and iron silicate minerals. Following sample return, the compositions and ages of these variably altered igneous rocks are expected to reveal the geophysical and geochemical nature of the planet's interior at the time of emplacement, characterize martian magmatism, and place timing constraints on geologic processes, both in Jezero Crater and more widely on Mars. Petrographic observations and geochemical analyses, coupled with geochronology of secondary minerals, can also reveal the timing of aqueous activity as well as constrain the chemical and physical conditions of the environments in which these minerals precipitated, and the nature and composition of organic compounds preserved in association with these phases. Returned samples from these units will help constrain the crater chronology of Mars and the global evolution of the planet's interior, for understanding the processes that formed Jezero Crater floor units, and for constraining the style and duration of aqueous activity in Jezero Crater, past habitability, and cycling of organic elements in Jezero Crater.
</summary>
<dc:date>2023-02-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hand Magnets and the Destruction of Ancient Meteorite Magnetism</title>
<link href="https://hdl.handle.net/1721.1/165455" rel="alternate"/>
<author>
<name>Vervelidou, Foteini</name>
</author>
<author>
<name>Weiss, Benjamin P</name>
</author>
<author>
<name>Lagroix, France</name>
</author>
<id>https://hdl.handle.net/1721.1/165455</id>
<updated>2026-04-16T03:05:07Z</updated>
<published>2023-04-06T00:00:00Z</published>
<summary type="text">Hand Magnets and the Destruction of Ancient Meteorite Magnetism
Vervelidou, Foteini; Weiss, Benjamin P; Lagroix, France
Meteorites provide invaluable records of planetary formation and evolution. Studies of their paleomagnetism have constrained accretion in the protoplanetary disk, the thermal evolution and differentiation of planetesimals, and the history of planetary dynamos. Yet, the potential of these magnetic records in advancing the field of planetary science is severely hindered by a widely used technique: application of hand magnets to assist in meteorite classification. Touching a meteorite with a magnet results in near‐instantaneous destruction of its magnetic record. Here, we showcase the destructive effects of exposing meteorites to magnets through numerical modeling, a controlled remagnetization experiment on a terrestrial basalt, and a paleomagnetic study of the oldest known Martian meteorite, the Northwest Africa (NWA) 7034 pairing group. NWA 7034 is a polymict regolith breccia containing zircon crystals with crystallization ages older than 4.4 billion years. As such it contains materials that are sufficiently old to have formed during the time Mars is most likely to have had a core dynamo. Unfortunately, we found that all nine paired stones of NWA 7034 that we investigated were remagnetized by hand magnets, as has been observed for many other hot desert meteorites. We recommend that magnets not be applied to meteorites during collection and curation. Instead, a low‐field susceptibility meter is a far more sensitive and completely nondestructive tool for meteorite classification.
</summary>
<dc:date>2023-04-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Carbonate Detection With SuperCam in Igneous Rocks on the Floor of Jezero Crater, Mars</title>
<link href="https://hdl.handle.net/1721.1/165454" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165454</id>
<updated>2026-04-16T03:07:24Z</updated>
<published>2022-12-14T00:00:00Z</published>
<summary type="text">Carbonate Detection With SuperCam in Igneous Rocks on the Floor of Jezero Crater, Mars
Perseverance explored two geological units on the floor of Jezero Crater over the first 420 Martian days of the Mars2020 mission. These units, the Máaz and Séítah formations, are interpreted to be igneous in origin, with traces of alteration. We report the detection of carbonate phases along the rover traverse based on laser-induced breakdown spectroscopy (LIBS), infrared reflectance spectroscopy (IRS), and time-resolved Raman (TRR) spectroscopy by the SuperCam instrument. Carbonates are identified through direct detection of vibrational modes of CO3 functional groups (IRS and TRR), major oxides content, and ratios of C and O signal intensities (LIBS). In Séítah, the carbonates are consistent with magnesite-siderite solid solutions (Mg# of 0.42–0.70) with low calcium contents (&lt;5 wt.% CaO). They are detected together with olivine in IRS and TRR spectra. LIBS and IRS also indicate a spatial association of the carbonates with clays. Carbonates in Máaz are detected in fewer points, as: (a) siderite (Mg# as low as 0.03); (b) carbonate-containing coatings, enriched in Mg (Mg# ∼0.82) and spatially associated with different salts. Overall, using conservative criteria, carbonate detections are rare in LIBS (∼30/2,000 points), IRS (∼15/2,000 points), and TRR (1/150 points) data. This is best explained by (a) a low carbonate content overall, (b) small carbonate grains mixed with other phases, (c) intrinsic complexity of in situ measurements. This is consistent with orbital observations of Jezero crater, and similar to compositions of carbonates previously reported in Martian meteorites. This suggests a limited carbonation of Jezero rocks by locally equilibrated fluids.
</summary>
<dc:date>2022-12-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Resonance Ionization Spectroscopy Experiment at Facility for Rare Isotope Beams</title>
<link href="https://hdl.handle.net/1721.1/165453" rel="alternate"/>
<author>
<name>Brinson, AJ</name>
</author>
<author>
<name>Rickey, BJ</name>
</author>
<author>
<name>Allmond, JM</name>
</author>
<author>
<name>Dockery, A</name>
</author>
<author>
<name>Chiu, A Fernandez</name>
</author>
<author>
<name>Ruiz, RF Garcia</name>
</author>
<author>
<name>Gray, TJ</name>
</author>
<author>
<name>Karthein, J</name>
</author>
<author>
<name>King, TT</name>
</author>
<author>
<name>Minamisono, K</name>
</author>
<author>
<name>Ortiz-Cortes, A</name>
</author>
<author>
<name>Pineda, SV</name>
</author>
<author>
<name>Rasco, BC</name>
</author>
<author>
<name>Reponen, M</name>
</author>
<author>
<name>Udrescu, SM</name>
</author>
<author>
<name>Vernon, AR</name>
</author>
<author>
<name>Wilkins, SG</name>
</author>
<id>https://hdl.handle.net/1721.1/165453</id>
<updated>2026-04-16T03:06:18Z</updated>
<published>2026-03-12T00:00:00Z</published>
<summary type="text">Resonance Ionization Spectroscopy Experiment at Facility for Rare Isotope Beams
Brinson, AJ; Rickey, BJ; Allmond, JM; Dockery, A; Chiu, A Fernandez; Ruiz, RF Garcia; Gray, TJ; Karthein, J; King, TT; Minamisono, K; Ortiz-Cortes, A; Pineda, SV; Rasco, BC; Reponen, M; Udrescu, SM; Vernon, AR; Wilkins, SG
This manuscript reports on the commissioning of the Resonance Ionization Spectroscopy Experiment (RISE) at the BEam COoler and LAser spectroscopy (BECOLA) facility at Facility for Rare Isotope Beams (FRIB). The instrument implements the collinear resonance ionization spectroscopy technique for sensitive measurements of isotope shifts and hyperfine structure of short-lived isotopes produced at FRIB. The existing BECOLA beamline was extended to integrate an electrostatic ion-beam bender and an ion detector at ultrahigh vacuum. An injection-seeded titanium-sapphire laser and a multiharmonic pulsed neodymium-doped yttrium aluminum garnet laser were installed to perform resonant excitation and selective ionization. Commissioning tests were performed to demonstrate the capabilities of the instrument by measuring the hyperfine structure of stable27 Al produced in an offline ion source. The RISE instrument is ready and operational for future studies of short-lived isotopes at FRIB.
</summary>
<dc:date>2026-03-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Exceptional topology on nonorientable manifolds</title>
<link href="https://hdl.handle.net/1721.1/165452" rel="alternate"/>
<author>
<name>König, J Lukas K</name>
</author>
<author>
<name>Yang, Kang</name>
</author>
<author>
<name>Fonseca, André Grossi</name>
</author>
<author>
<name>Vaidya, Sachin</name>
</author>
<author>
<name>Soljačić, Marin</name>
</author>
<author>
<name>Bergholtz, Emil J</name>
</author>
<id>https://hdl.handle.net/1721.1/165452</id>
<updated>2026-04-16T03:04:53Z</updated>
<published>2026-03-03T00:00:00Z</published>
<summary type="text">Exceptional topology on nonorientable manifolds
König, J Lukas K; Yang, Kang; Fonseca, André Grossi; Vaidya, Sachin; Soljačić, Marin; Bergholtz, Emil J
We classify gapped phases and characteristic nodal points of non-Hermitian band structures on two-dimensional nonorientable parameter spaces. Such spaces arise in a wide range of physical systems in the presence of nonsymmorphic parameter space symmetries. For gapped phases, we find that nonorientable spaces provide a natural setting for exploring fundamental structural problems in braid group theory, such as torsion and conjugacy. Gapless systems, which host exceptional points (EPs), explicitly violate fermion doubling, even in two-band models. We demonstrate that EPs traversing the nonorientable parameter space exhibit non-Abelian charge inversion. These braided phases and their transitions leave distinct signatures in the form of bulk Fermi arc degeneracies, offering a concrete route toward experimental realization and verification.
</summary>
<dc:date>2026-03-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ionization potential of radium monofluoride</title>
<link href="https://hdl.handle.net/1721.1/165451" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165451</id>
<updated>2026-04-16T03:06:07Z</updated>
<published>2026-01-13T00:00:00Z</published>
<summary type="text">Ionization potential of radium monofluoride
The ionization potential (IP) of radium monofluoride (RaF) was measured to be 4.969(2)[10] eV, revealing a relativistic enhancement in the series of alkaline earth monofluorides. The results are in agreement with a relativistic coupled-cluster prediction of 4.981(7) eV, incorporating up to quantum electrodynamics corrections. Using the same computational methodology, an improved calculation for the dissociation energy (&#119863;0) of 5.54(5) eV is presented. This confirms that RaF joins the group of diatomic molecules for which &#119863;0&gt;IP, paving the way for precision control and interrogation of its Rydberg states.
</summary>
<dc:date>2026-01-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Trade-off between path entanglement and quantum sensitivity</title>
<link href="https://hdl.handle.net/1721.1/165450" rel="alternate"/>
<author>
<name>Lou, Benjamin</name>
</author>
<author>
<name>Loughlin, Hudson A</name>
</author>
<author>
<name>Mavalvala, Nergis</name>
</author>
<id>https://hdl.handle.net/1721.1/165450</id>
<updated>2026-04-16T03:06:54Z</updated>
<published>2025-10-17T00:00:00Z</published>
<summary type="text">Trade-off between path entanglement and quantum sensitivity
Lou, Benjamin; Loughlin, Hudson A; Mavalvala, Nergis
Entanglement often increases quantum measurement schemes’ sensitivity. However, we find that in precision measurements with zero-mean Gaussian states, such as squeezed states, entanglement between different paths degrades measurement sensitivity. We prove an inverse relationship between entanglement entropy and sensitivity for measurements of single-mode phase shifts in multimode systems and for phase shifts on both modes in two-mode systems. In the two-mode case, which models devices such as interferometers, we find that entanglement strongly degrades differential phase sensitivity. Finally, we show that minimizing entanglement between paths maximizes the phase sensitivity of &#119873;-mode systems with zero-mean Gaussian state inputs.
</summary>
<dc:date>2025-10-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Classification of fragile topology enabled by matrix homotopy</title>
<link href="https://hdl.handle.net/1721.1/165449" rel="alternate"/>
<author>
<name>Lee, Ki Young</name>
</author>
<author>
<name>Wong, Stephan</name>
</author>
<author>
<name>Vaidya, Sachin</name>
</author>
<author>
<name>Loring, Terry A.</name>
</author>
<author>
<name>Cerjan, Alexander</name>
</author>
<id>https://hdl.handle.net/1721.1/165449</id>
<updated>2026-04-16T03:07:41Z</updated>
<published>2025-09-10T00:00:00Z</published>
<summary type="text">Classification of fragile topology enabled by matrix homotopy
Lee, Ki Young; Wong, Stephan; Vaidya, Sachin; Loring, Terry A.; Cerjan, Alexander
Flat bands in twisted materials have attracted considerable attention due to the emergence of correlated phases&#13;
that can be associated with the non-Wannier-representable nature of its single-particle states. Specifically, these&#13;
bands can exhibit a class of topology that can be nullified by the addition of trivial bands, termed fragile topology,&#13;
which has required an expansion of prior classification schemes. However, existing approaches for predicting&#13;
fragile topology rely on momentum-space methods, e.g., Wilson loops, presenting a fundamental challenge&#13;
for using fragile topology as a predictor of correlated phases in aperiodic systems, such as incommensurate&#13;
twist angles in moiré materials. Here, we develop a Z2 energy-resolved topological marker for classifying&#13;
fragile phases using a system’s position-space description, enabling the direct classification of finite, disordered,&#13;
and aperiodic materials. By translating the physical symmetries protecting the system’s fragile topological&#13;
phase into matrix symmetries of the system’s Hamiltonian and position operators, we use matrix homotopy to&#13;
construct our topological marker while simultaneously yielding a quantitative measure of topological robustness.&#13;
We demonstrate our framework’s effectiveness in both a low-energy tight-binding model and a continuum&#13;
photonic crystal model of C2T -symmetric systems, and find that fragile topology can both persist under&#13;
strong disorder and even exhibit disorder-induced reentrant phase transitions. Our photonic crystal results&#13;
also demonstrate the robustness of fragile topology, and the applicability of our approach, to heterostructures&#13;
lacking a bulk spectral gap. Overall, our framework serves as an efficient tool for elucidating fragile topology,&#13;
offering guidance for the prediction and discovery of correlated phases in both crystalline and aperiodic&#13;
materials.
</summary>
<dc:date>2025-09-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Universality of the perturbative definition of the Flory-Huggins parameter</title>
<link href="https://hdl.handle.net/1721.1/165448" rel="alternate"/>
<author>
<name>Petrov, Artem</name>
</author>
<author>
<name>Hernández-Mendoza, Guillermo A</name>
</author>
<author>
<name>Alexander-Katz, Alfredo</name>
</author>
<id>https://hdl.handle.net/1721.1/165448</id>
<updated>2026-04-16T03:06:24Z</updated>
<published>2026-03-09T00:00:00Z</published>
<summary type="text">Universality of the perturbative definition of the Flory-Huggins parameter
Petrov, Artem; Hernández-Mendoza, Guillermo A; Alexander-Katz, Alfredo
The effective Flory-Huggins parameter χe is one of the most important characteristics of any multicomponent&#13;
polymer system. This parameter characterizes the free energy of interaction between monomers of different&#13;
types and controls the phase behavior of polymer mixtures. In this work, we developed a perturbation theory and&#13;
derived how χe depends on the details of an arbitrary coarse-grained polymer model. After defining χe in this&#13;
way, we found that the models of symmetric polymer blends and diblock copolymer melts behaved universally:&#13;
Their phase transition points, free energies, and mesoscopic invariant structure factors depended solely on&#13;
the chain architecture, the invariant chain length N¯, and the interaction parameter χeN. To parametrize our&#13;
perturbative expression for χe, only the effective coordination number distribution in a reference homogeneous&#13;
system needs to be measured. This distribution, in turn, can be directly mapped onto coarse-grained model&#13;
parameters set prior to simulation, which clarifies how model construction influences χe. Our definition of χe&#13;
enables straightforward quantitative comparison of models with each other and with experiments, which will&#13;
facilitate the computational design of multicomponent polymer materials.
</summary>
<dc:date>2026-03-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Asymmetry of the Distribution of Vertical Velocities of the Extratropical Atmosphere in Theory, Models, and Reanalysis</title>
<link href="https://hdl.handle.net/1721.1/165447" rel="alternate"/>
<author>
<name>Kohl, Matthieu</name>
</author>
<author>
<name>O’Gorman, Paul A</name>
</author>
<id>https://hdl.handle.net/1721.1/165447</id>
<updated>2026-04-16T03:07:02Z</updated>
<published>2024-03-01T00:00:00Z</published>
<summary type="text">Asymmetry of the Distribution of Vertical Velocities of the Extratropical Atmosphere in Theory, Models, and Reanalysis
Kohl, Matthieu; O’Gorman, Paul A
The vertical velocity distribution in the atmosphere is asymmetric with stronger upward than downward motion. This asymmetry is important for the distribution of precipitation and its extremes and for an effective static stability that has been used to represent the effects of latent heating on extratropical eddies. Idealized GCM simulations show that the asymmetry increases as the climate warms, but current moist dynamical theories based around small-amplitude modes greatly overestimate the increase in asymmetry with warming found in the simulations. Here, we first analyze the changes in asymmetry with warming using numerical inversions of a moist quasigeostrophic omega equation applied to output from the idealized GCM. The inversions show that increases in the asymmetry with warming in the GCM simulations are primarily related to decreases in moist static stability on the left-hand side of the moist omega equation, whereas the dynamical forcing on the right-hand side of the omega equation is unskewed and contributes little to the asymmetry of the vertical velocity distribution. By contrast, increases in asymmetry with warming for small-amplitude modes are related to changes in both moist static stability and dynamical forcing leading to enhanced asymmetry in warm climates. We distill these insights into a toy model of the moist omega equation that is solved for a given moist static stability and wavenumber of the dynamical forcing. In comparison to modal theory, the toy model better reproduces the slow increase of the asymmetry with climate warming in the idealized GCM simulations and over the seasonal cycle from winter to summer in reanalysis.
</summary>
<dc:date>2024-03-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Large-Scale Circulations and Dry Tropical Cyclones in Direct Numerical Simulations of Rotating Rayleigh–Bénard Convection</title>
<link href="https://hdl.handle.net/1721.1/165446" rel="alternate"/>
<author>
<name>Velez-Pardo, Martin</name>
</author>
<author>
<name>Cronin, Timothy W</name>
</author>
<id>https://hdl.handle.net/1721.1/165446</id>
<updated>2026-04-16T03:06:14Z</updated>
<published>2023-09-01T00:00:00Z</published>
<summary type="text">Large-Scale Circulations and Dry Tropical Cyclones in Direct Numerical Simulations of Rotating Rayleigh–Bénard Convection
Velez-Pardo, Martin; Cronin, Timothy W
The organization of convection into relatively long-lived patterns of large spatial scales, like tropical cyclones, is a common feature of Earth’s atmosphere. However, many key aspects of convective aggregation and its relationship&#13;
with tropical cyclone formation remain elusive. In this work, we simulate highly idealized setups of dry convection, inspired&#13;
by the Rayleigh–Bénard system, to probe the effects of different thermal boundary conditions on the scale of organization&#13;
of rotating convection, and on the formation of tropical cyclone–like structures. We find that in domains with sufficiently&#13;
high aspect ratios, moderately turbulent (Raf  109), moderately rotating (Roc  1) convection organizes more persistently&#13;
and at larger scales when thermal boundary conditions constrain heat fluxes rather than temperatures. Furthermore, for&#13;
some thermal boundary conditions with asymmetric heat fluxes, convection organizes into persistent vortices with the essential properties of mature tropical cyclones: a warm core, high axisymmetry, a strong azimuthal circulation, and substantially larger size than individual buoyant plumes. We argue that flux asymmetry results in a persistent and localized input&#13;
of buoyancy, which allows spatially aggregated convection to sustain a warm core in a developing large-scale vortex. Crucially, the most intense and axisymmetric cyclone forms for setups where the bottom heat flux is enhanced by the nearby&#13;
flow and the top boundary is insulating, as long as the convective Rossby number is higher than about 1. Our results demonstrate the great potential for dialogue between classical turbulence research and the study of convective aggregation and&#13;
tropical cyclones.
</summary>
<dc:date>2023-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Quasi-Linear Relation between Planetary Outgoing Longwave Radiation and Surface Temperature: A Climate Footprint of Radiative and Nonradiative Processes</title>
<link href="https://hdl.handle.net/1721.1/165445" rel="alternate"/>
<author>
<name>Cai, Ming</name>
</author>
<author>
<name>Sun, Jie</name>
</author>
<author>
<name>Ding, Feng</name>
</author>
<author>
<name>Kang, Wanying</name>
</author>
<author>
<name>Hu, Xiaoming</name>
</author>
<id>https://hdl.handle.net/1721.1/165445</id>
<updated>2026-04-16T03:05:59Z</updated>
<published>2023-09-01T00:00:00Z</published>
<summary type="text">The Quasi-Linear Relation between Planetary Outgoing Longwave Radiation and Surface Temperature: A Climate Footprint of Radiative and Nonradiative Processes
Cai, Ming; Sun, Jie; Ding, Feng; Kang, Wanying; Hu, Xiaoming
The slope of the quasi-linear relation between planetary outgoing longwave radiation (OLR) and surface temperature (TS ) is an important parameter measuring the sensitivity of Earth’s climate system. The primary objective of this study is to seek a general explanation for the quasi-linear OLR–TS relation that remains valid regardless of the strength of the atmospheric window’s narrowing effect on planetary thermal emission at higher temperatures. The physical understanding of the quasi-linear OLR–TS relation and its slope is gained from observation analysis, climate simulations with radiative–convective equilibrium and general circulation models, and a series of online feedback suppression experiments. The observed quasi-linear OLR–TS relation manifests a climate footprint of radiative (such as the greenhouse effect) and nonradiative processes (poleward energy transport). The former acts to increase the meridional gradient of surface temperature and the latter decreases the meridional gradient of atmospheric temperatures, causing the flattening of the meridional profile of the OLR. Radiative processes alone can lead to a quasi-linear OLR–TS relation that is more steeply sloped. The atmospheric poleward energy transport alone can also lead to a quasi-linear OLR–TS relation by rerouting part of the OLR to be emitted from a warmer place to a colder place. The combined effects of radiative and nonradiative processes make the quasi-linear OLR–TS relation less sloped with a higher degree of linearity. In response to anthropogenic radiative forcing, the slope of the quasi-linear OLR–TS relation is further reduced via stronger water vapor feedback and enhanced poleward energy transport.
</summary>
<dc:date>2023-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Earth System Reanalysis in Support of Climate Model Improvements</title>
<link href="https://hdl.handle.net/1721.1/165444" rel="alternate"/>
<author>
<name>Stammer, Detlef</name>
</author>
<author>
<name>Amrhein, Daniel E</name>
</author>
<author>
<name>Alonso Balmaseda, Magdalena</name>
</author>
<author>
<name>Bertino, Laurent</name>
</author>
<author>
<name>Bonavita, Massimo</name>
</author>
<author>
<name>Buontempo, Carlo</name>
</author>
<author>
<name>Caltabiano, Nico</name>
</author>
<author>
<name>Counillon, Francois</name>
</author>
<author>
<name>Fenty, Ian</name>
</author>
<author>
<name>Ferrari, Raffaele</name>
</author>
<author>
<name>Fujii, Yosuke</name>
</author>
<author>
<name>Gaikwad, Shreyas Sunil</name>
</author>
<author>
<name>Gentine, Pierre</name>
</author>
<author>
<name>Gettelman, Andrew</name>
</author>
<author>
<name>Gopalakrishnan, Ganesh</name>
</author>
<author>
<name>Heimbach, Patrick</name>
</author>
<author>
<name>Hersbach, Hans</name>
</author>
<author>
<name>Hill, Chris</name>
</author>
<author>
<name>Kobayashi, Shinya</name>
</author>
<author>
<name>Köhl, Armin</name>
</author>
<author>
<name>Kushner, Paul J</name>
</author>
<author>
<name>Mazloff, Matthew</name>
</author>
<author>
<name>Nakamura, Hisashi</name>
</author>
<author>
<name>Penny, Stephen G</name>
</author>
<author>
<name>Slivinski, Laura</name>
</author>
<author>
<name>Tegtmeier, Susann</name>
</author>
<author>
<name>Zanna, Laure</name>
</author>
<id>https://hdl.handle.net/1721.1/165444</id>
<updated>2026-04-16T03:04:41Z</updated>
<published>2024-08-01T00:00:00Z</published>
<summary type="text">Earth System Reanalysis in Support of Climate Model Improvements
Stammer, Detlef; Amrhein, Daniel E; Alonso Balmaseda, Magdalena; Bertino, Laurent; Bonavita, Massimo; Buontempo, Carlo; Caltabiano, Nico; Counillon, Francois; Fenty, Ian; Ferrari, Raffaele; Fujii, Yosuke; Gaikwad, Shreyas Sunil; Gentine, Pierre; Gettelman, Andrew; Gopalakrishnan, Ganesh; Heimbach, Patrick; Hersbach, Hans; Hill, Chris; Kobayashi, Shinya; Köhl, Armin; Kushner, Paul J; Mazloff, Matthew; Nakamura, Hisashi; Penny, Stephen G; Slivinski, Laura; Tegtmeier, Susann; Zanna, Laure
What: More than 70 experts from research and operational centers came together in a&#13;
hybrid meeting held at the Massachusetts Institute of Technology (MIT) to discuss the&#13;
state of climate-model-related data assimilation and to inspire future work required to&#13;
make coupled data assimilation and Earth system reanalysis a reality.&#13;
When: 12–14 June 2023&#13;
Where: Massachusetts Institute of Technology, Cambridge, Massachusetts
</summary>
<dc:date>2024-08-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A conserved disruption of nucleocytoplasmic compartmentalization in meiosis is controlled by a kinase-phosphatase pair in Saccharomyces cerevisiae</title>
<link href="https://hdl.handle.net/1721.1/165443" rel="alternate"/>
<author>
<name>Walsh, Madison E</name>
</author>
<author>
<name>Chetlapalli, Keerthana</name>
</author>
<author>
<name>Styler, Benjamin S</name>
</author>
<author>
<name>Upadhyayula, Srigokul</name>
</author>
<author>
<name>King, Grant A</name>
</author>
<author>
<name>Ünal, Elçin</name>
</author>
<id>https://hdl.handle.net/1721.1/165443</id>
<updated>2026-04-16T03:04:44Z</updated>
<published>2025-12-01T00:00:00Z</published>
<summary type="text">A conserved disruption of nucleocytoplasmic compartmentalization in meiosis is controlled by a kinase-phosphatase pair in Saccharomyces cerevisiae
Walsh, Madison E; Chetlapalli, Keerthana; Styler, Benjamin S; Upadhyayula, Srigokul; King, Grant A; Ünal, Elçin
In eukaryotic organisms, the nucleus is remodeled to accommodate the space required for chromosome segregation. Remodeling strategies range from closed division, where the nuclear envelope remains intact, to open division, where the nuclear envelope is temporarily disassembled. While the budding yeast Saccharomyces cerevisiae (S. cerevisiae) undergoes closed mitosis, its meiotic nuclear division strategy is less understood. Here, we investigate nucleocytoplasmic compartmentalization during budding yeast meiosis and discover that meiosis II represents a semi-closed division marked by bidirectional mixing between the nucleus and cytoplasm. This includes nuclear entry of the Ran GTPase activating protein (RanGAP), typically cytoplasmic, although RanGAP relocalization appears to be a consequence, rather than a cause of permeability changes. This intercompartmental mixing occurs without nuclear envelope breakdown or dispersal of nucleoporins and is independent of known nuclear pore complex remodeling events. This phenomenon, termed virtual nuclear envelope breakdown (vNEBD), represents a unique mechanism distinct from other semi-closed divisions. We demonstrate that vNEBD is integrated into the meiotic program and regulated by the conserved meiotic kinase Ime2, and the meiosis-specific protein phosphatase 1 regulatory subunit, Gip1. Remarkably, the vNEBD event is conserved between S. cerevisiae and the distantly related Schizosaccharomyces pombe (S. pombe), indicating a fundamental role in meiosis.
</summary>
<dc:date>2025-12-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cultivating PhD Aspirations during College</title>
<link href="https://hdl.handle.net/1721.1/165442" rel="alternate"/>
<author>
<name>Jones, Daniela S</name>
</author>
<author>
<name>Gillette, Devyn D</name>
</author>
<author>
<name>Cooper, Paige E</name>
</author>
<author>
<name>Salinas, Raquel Y</name>
</author>
<author>
<name>Hill, Jennifer L</name>
</author>
<author>
<name>Black, Sherilynn J</name>
</author>
<author>
<name>Lew, Daniel J</name>
</author>
<author>
<name>Canelas, Dorian A</name>
</author>
<id>https://hdl.handle.net/1721.1/165442</id>
<updated>2026-04-16T03:06:56Z</updated>
<published>2022-06-01T00:00:00Z</published>
<summary type="text">Cultivating PhD Aspirations during College
Jones, Daniela S; Gillette, Devyn D; Cooper, Paige E; Salinas, Raquel Y; Hill, Jennifer L; Black, Sherilynn J; Lew, Daniel J; Canelas, Dorian A
Science, technology, engineering, and mathematics (STEM) career barriers persist for individuals from marginalized communities due to financial and educational inequality, unconscious bias, and other disadvantaging factors. To evaluate differences in plans and interests between historically underrepresented (UR) and well-represented (WR) groups, we surveyed more than 3000 undergraduates enrolled in chemistry courses. Survey responses showed all groups arrived on campus with similar interests in learning more about science research. Over the 4 years of college, WR students maintained their interest levels, but UR students did not, creating a widening gap between the groups. Without intervention, UR students participated in lab research at lower rates than their WR peers. A case study pilot program, Biosciences Collaborative for Research Engagement (BioCoRE), encouraged STEM research exploration by undergraduates from marginalized communities. BioCoRE provided mentoring and programming that increased community cohesion and cultivated students’ intrinsic scientific mindsets. Our data showed that there was no statistical significant difference between BioCoRE WR and UR students when surveyed about plans for a medical profession, graduate school, and laboratory scientific research. In addition, BioCoRE participants reported higher levels of confidence in conducting research than non-BioCoRE Scholars. We now have the highest annual number of UR students moving into PhD programs in our institution’s history.
</summary>
<dc:date>2022-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Remodeling of cytoskeleton, chromatin, and gene expression during mechanical rejuvenation of aged human dermal fibroblasts</title>
<link href="https://hdl.handle.net/1721.1/165441" rel="alternate"/>
<author>
<name>Sornapudi, Trinadha Rao</name>
</author>
<author>
<name>Yuan, Luezhen</name>
</author>
<author>
<name>Braunger, Jana M</name>
</author>
<author>
<name>Uhler, Caroline</name>
</author>
<author>
<name>Shivashankar, GV</name>
</author>
<id>https://hdl.handle.net/1721.1/165441</id>
<updated>2026-04-16T03:06:39Z</updated>
<published>2025-01-01T00:00:00Z</published>
<summary type="text">Remodeling of cytoskeleton, chromatin, and gene expression during mechanical rejuvenation of aged human dermal fibroblasts
Sornapudi, Trinadha Rao; Yuan, Luezhen; Braunger, Jana M; Uhler, Caroline; Shivashankar, GV
Aging is associated with a progressive decline in cellular function. To reset the aged cellular phenotype, various reprogramming approaches, including mechanical routes, have been explored. However, the epigenetic mechanisms underlying cellular rejuvenation are poorly understood. Here, we studied the cytoskeletal, genome-wide chromatin and transcriptional changes in young, aged, and mechanically rejuvenated fibroblasts using immunofluorescence, RNA sequencing, and Hi-C experiments. The mechanically rejuvenated aged fibroblasts, that had partially reset their transcription to a younger cell state, showed a local reorganization of the interchromosomal contacts and lamina-associated domains. Interestingly, the observed chromatin reorganization correlated with the transcriptional changes. Immunofluorescence experiments in the rejuvenated state confirmed increased actomyosin contractility like younger fibroblasts. In addition, the rejuvenated contractile properties were maintained over multiple cell passages. Overall, our results give an overview of how changes in the cytoskeleton, chromatin, and gene activity are connected to aging and rejuvenation.
</summary>
<dc:date>2025-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rickettsia parkeri forms extensive, stable contacts with the rough endoplasmic reticulum</title>
<link href="https://hdl.handle.net/1721.1/165440" rel="alternate"/>
<author>
<name>Acevedo-Sánchez, Yamilex</name>
</author>
<author>
<name>Woida, Patrick J</name>
</author>
<author>
<name>Anderson, Caroline</name>
</author>
<author>
<name>Kraemer, Stephan</name>
</author>
<author>
<name>Lamason, Rebecca L</name>
</author>
<id>https://hdl.handle.net/1721.1/165440</id>
<updated>2026-04-16T03:05:03Z</updated>
<published>2025-03-03T00:00:00Z</published>
<summary type="text">Rickettsia parkeri forms extensive, stable contacts with the rough endoplasmic reticulum
Acevedo-Sánchez, Yamilex; Woida, Patrick J; Anderson, Caroline; Kraemer, Stephan; Lamason, Rebecca L
Upon invasion into the host cell, a subset of bacterial pathogens resides exclusively in the cytosol. While previous research revealed how they reshape the plasma membrane during invasion, subvert the immune response, and hijack cytoskeletal dynamics to promote their motility, it was unclear if these pathogens also interacted with the organelles in this crowded intracellular space. Here, we examined if the obligate intracellular pathogen Rickettsia parkeri interacts with the endoplasmic reticulum (ER), a large and dynamic organelle spread throughout the cell. Using live-cell microscopy and transmission and focused-ion-beam scanning electron microscopy, we show that R. parkeri forms extensive contacts with the rough ER that are ∼55 nm apart and cover more than half the bacterial surface. Depletion of the ER-specific tethers VAPA and VAPB reduced rickettsia–ER contacts, and VAPA and VAPB were localized around intracellular rickettsiae. Overall, our findings illuminate an interkingdom ER contact uniquely mediated by rickettsiae that mimics some characteristics of traditional host membrane contact sites.
</summary>
<dc:date>2025-03-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Combining genomics and epidemiology to track mumps virus transmission in the United States</title>
<link href="https://hdl.handle.net/1721.1/165439" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165439</id>
<updated>2026-04-16T03:05:37Z</updated>
<published>2020-02-11T00:00:00Z</published>
<summary type="text">Combining genomics and epidemiology to track mumps virus transmission in the United States
Unusually large outbreaks of mumps across the United States in 2016 and 2017 raised questions about the extent of mumps circulation and the relationship between these and prior outbreaks. We paired epidemiological data from public health investigations with analysis of mumps virus whole genome sequences from 201 infected individuals, focusing on Massachusetts university communities. Our analysis suggests continuous, undetected circulation of mumps locally and nationally, including multiple independent introductions into Massachusetts and into individual communities. Despite the presence of these multiple mumps virus lineages, the genomic data show that one lineage has dominated in the US since at least 2006. Widespread transmission was surprising given high vaccination rates, but we found no genetic evidence that variants arising during this outbreak contributed to vaccine escape. Viral genomic data allowed us to reconstruct mumps transmission links not evident from epidemiological data or standard single-gene surveillance efforts and also revealed connections between apparently unrelated mumps outbreaks.
</summary>
<dc:date>2020-02-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>An algorithmic framework for synthetic cost-aware decision making in molecular design</title>
<link href="https://hdl.handle.net/1721.1/165438" rel="alternate"/>
<author>
<name>Fromer, Jenna C</name>
</author>
<author>
<name>Coley, Connor W</name>
</author>
<id>https://hdl.handle.net/1721.1/165438</id>
<updated>2026-04-15T03:04:50Z</updated>
<published>2024-06-17T00:00:00Z</published>
<summary type="text">An algorithmic framework for synthetic cost-aware decision making in molecular design
Fromer, Jenna C; Coley, Connor W
Small molecules exhibiting desirable property profiles are often discovered through an iterative process of designing, synthesizing and testing sets of molecules. The selection of molecules to synthesize from all possible candidates is a complex decision-making process that typically relies on expert chemist intuition. Here we propose a quantitative decision-making framework, SPARROW, that prioritizes molecules for evaluation by balancing expected information gain and synthetic cost. SPARROW integrates molecular design, property prediction and retrosynthetic planning to balance the utility of testing a molecule with the cost of batch synthesis. We demonstrate, through three case studies, that the developed algorithm captures the non-additive costs inherent to batch synthesis, leverages common reaction steps and intermediates, and scales to hundreds of molecules.
</summary>
<dc:date>2024-06-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>RDCanon: A Python Package for Canonicalizing the Order of Tokens in SMARTS Queries</title>
<link href="https://hdl.handle.net/1721.1/165437" rel="alternate"/>
<author>
<name>Mahjour, Babak A</name>
</author>
<author>
<name>Coley, Connor W</name>
</author>
<id>https://hdl.handle.net/1721.1/165437</id>
<updated>2026-04-15T03:06:04Z</updated>
<published>2024-03-15T00:00:00Z</published>
<summary type="text">RDCanon: A Python Package for Canonicalizing the Order of Tokens in SMARTS Queries
Mahjour, Babak A; Coley, Connor W
SMARTS is a widely used language in cheminformatics for defining substructural queries for database lookups, reaction templates for chemical transformations, and other applications. As an extension to SMILES, many SMARTS patterns can represent the same query. Despite this, no canonicalization algorithm invariant of the line notation sequence or atomic numbering is publicly available. Here, we introduce RDCanon, an open-source Python package that can be used to standardize SMARTS queries. RDCanon is designed to ensure that the sequence of atomic queries remains consistent for all graphs representing the same substructure query and to ensure a canonical sequence of primitives within each individual atom query; furthermore, the algorithm can be applied to canonicalize the order of reactants, agents, and products and their atom map numbers in reaction SMARTS templates. As part of its canonicalization algorithm, RDCanon provides a mechanism in which the canonicalized SMARTS is optimized for speed against specific molecular databases. Several case studies are provided to showcase improved efficiency in substructure matching and retrosynthetic analysis.
</summary>
<dc:date>2024-03-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Automation of air-free synthesis</title>
<link href="https://hdl.handle.net/1721.1/165436" rel="alternate"/>
<author>
<name>Mahjour, Babak A</name>
</author>
<author>
<name>Coley, Connor W</name>
</author>
<id>https://hdl.handle.net/1721.1/165436</id>
<updated>2026-04-15T03:05:52Z</updated>
<published>2024-04-11T00:00:00Z</published>
<summary type="text">Automation of air-free synthesis
Mahjour, Babak A; Coley, Connor W
Cutting-edge chemistry is often performed in non-atmospheric conditions. Continued development of the Chemputer platform now enables the utilization of sensitive compounds in automated synthetic protocols.
</summary>
<dc:date>2024-04-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>PyLabRobot: An open-source, hardware-agnostic interface for liquid-handling robots and accessories</title>
<link href="https://hdl.handle.net/1721.1/165435" rel="alternate"/>
<author>
<name>Wierenga, Rick P</name>
</author>
<author>
<name>Golas, Stefan M</name>
</author>
<author>
<name>Ho, Wilson</name>
</author>
<author>
<name>Coley, Connor W</name>
</author>
<author>
<name>Esvelt, Kevin M</name>
</author>
<id>https://hdl.handle.net/1721.1/165435</id>
<updated>2026-04-15T03:05:28Z</updated>
<published>2023-10-20T00:00:00Z</published>
<summary type="text">PyLabRobot: An open-source, hardware-agnostic interface for liquid-handling robots and accessories
Wierenga, Rick P; Golas, Stefan M; Ho, Wilson; Coley, Connor W; Esvelt, Kevin M
Liquid-handling robots are often limited by proprietary interfaces that are only compatible with a single type of robot and operating system, restricting method sharing and slowing development. Here, we present PyLabRobot, an open-source, cross-platform Python interface capable of programming diverse liquid-handling robots, including Hamilton STARs and Vantages, Tecan EVOs, and Opentron OT-2s. PyLabRobot provides an interface for a universal set of commands and deck layout representations while enabling the control of diverse accessory devices. The interface can work with any liquid-handling robot capable of aspirating and dispensing precise volumes of liquid within a Cartesian coordinate system. In addition to the already integrated robots, we include guidance on integrating new liquid-handling systems and accessories. We validated the framework through unit tests and application demonstrations, including a browser-based simulator, a position calibration tool, and a path-teaching tool for complex movements. PyLabRobot provides a flexible, open, and collaborative programming environment for laboratory automation.
</summary>
<dc:date>2023-10-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Predictive Chemistry Augmented with Text Retrieval</title>
<link href="https://hdl.handle.net/1721.1/165434" rel="alternate"/>
<author>
<name>Qian, Yujie</name>
</author>
<author>
<name>Li, Zhening</name>
</author>
<author>
<name>Tu, Zhengkai</name>
</author>
<author>
<name>Coley, Connor</name>
</author>
<author>
<name>Barzilay, Regina</name>
</author>
<id>https://hdl.handle.net/1721.1/165434</id>
<updated>2026-04-15T03:06:54Z</updated>
<published>2023-12-01T00:00:00Z</published>
<summary type="text">Predictive Chemistry Augmented with Text Retrieval
Qian, Yujie; Li, Zhening; Tu, Zhengkai; Coley, Connor; Barzilay, Regina
This paper focuses on using natural language descriptions to enhance predictive models in the chemistry field. Conventionally, chemoinformatics models are trained with extensive structured data manually extracted from the literature. In this paper, we introduce TextReact, a novel method that directly augments predictive chemistry with texts retrieved from the literature. TextReact retrieves text descriptions relevant for a given chemical reaction, and then aligns them with the molecular representation of the reaction. This alignment is enhanced via an auxiliary masked LM objective incorporated in the predictor training. We empirically validate the framework on two chemistry tasks: reaction condition recommendation and one-step retrosynthesis. By leveraging text retrieval, TextReact significantly outperforms state-of-the-art chemoinformatics models trained solely on molecular data.
</summary>
<dc:date>2023-12-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Scientific discovery in the age of artificial intelligence</title>
<link href="https://hdl.handle.net/1721.1/165433" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165433</id>
<updated>2026-04-15T03:07:29Z</updated>
<published>2023-08-02T00:00:00Z</published>
<summary type="text">Scientific discovery in the age of artificial intelligence
Artificial intelligence (AI) is being increasingly integrated into scientific discovery to augment and accelerate research, helping scientists to generate hypotheses, design experiments, collect and interpret large datasets, and gain insights that might not have been possible using traditional scientific methods alone. Here we examine breakthroughs over the past decade that include self-supervised learning, which allows models to be trained on vast amounts of unlabelled data, and geometric deep learning, which leverages knowledge about the structure of scientific data to enhance model accuracy and efficiency. Generative AI methods can create designs, such as small-molecule drugs and proteins, by analysing diverse data modalities, including images and sequences. We discuss how these methods can help scientists throughout the scientific process and the central issues that remain despite such advances. Both developers and users of AI tools need a better understanding of when such approaches need improvement, and challenges posed by poor data quality and stewardship remain. These issues cut across scientific disciplines and require developing foundational algorithmic approaches that can contribute to scientific understanding or acquire it autonomously, making them critical areas of focus for AI innovation.
</summary>
<dc:date>2023-08-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>MIST-CF: Chemical Formula Inference from Tandem Mass Spectra</title>
<link href="https://hdl.handle.net/1721.1/165432" rel="alternate"/>
<author>
<name>Goldman, Samuel</name>
</author>
<author>
<name>Xin, Jiayi</name>
</author>
<author>
<name>Provenzano, Joules</name>
</author>
<author>
<name>Coley, Connor W</name>
</author>
<id>https://hdl.handle.net/1721.1/165432</id>
<updated>2026-04-15T03:06:44Z</updated>
<published>2023-09-19T00:00:00Z</published>
<summary type="text">MIST-CF: Chemical Formula Inference from Tandem Mass Spectra
Goldman, Samuel; Xin, Jiayi; Provenzano, Joules; Coley, Connor W
Chemical formula annotation for tandem mass spectrometry (MS/MS) data is the first step toward structurally elucidating unknown metabolites. While great strides have been made toward solving this problem, the current state-of-the-art method depends on time-intensive, proprietary, and expert-parametrized fragmentation tree construction and scoring. In this work, we extend our previous spectrum Transformer methodology into an energy-based modeling framework, MIST-CF: Metabolite Inference with Spectrum Transformers for Chemical Formula prediction, for learning to rank chemical formula and adduct assignments given an unannotated MS/MS spectrum. Importantly, MIST-CF learns in a data-dependent fashion using a Formula Transformer neural network architecture and circumvents the need for fragmentation tree construction. We train and evaluate our model on a large open-access database, showing an absolute improvement of 10% top 1 accuracy over other neural network architectures. We further validate our approach on the CASMI2022 challenge data set, achieving nearly equivalent performance to the winning entry within the positive mode category without any manual curation or postprocessing of our results. These results demonstrate an exciting strategy to more powerfully leverage MS2 fragment peaks for predicting MS1 precursor chemical formulas with data-driven learning.
</summary>
<dc:date>2023-09-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Annotating metabolite mass spectra with domain-inspired chemical formula transformers</title>
<link href="https://hdl.handle.net/1721.1/165431" rel="alternate"/>
<author>
<name>Goldman, Samuel</name>
</author>
<author>
<name>Wohlwend, Jeremy</name>
</author>
<author>
<name>Stražar, Martin</name>
</author>
<author>
<name>Haroush, Guy</name>
</author>
<author>
<name>Xavier, Ramnik J</name>
</author>
<author>
<name>Coley, Connor W</name>
</author>
<id>https://hdl.handle.net/1721.1/165431</id>
<updated>2026-04-15T03:07:40Z</updated>
<published>2023-08-17T00:00:00Z</published>
<summary type="text">Annotating metabolite mass spectra with domain-inspired chemical formula transformers
Goldman, Samuel; Wohlwend, Jeremy; Stražar, Martin; Haroush, Guy; Xavier, Ramnik J; Coley, Connor W
Metabolomics studies have identified small molecules that mediate cell signaling, competition and disease pathology, in part due to large-scale community efforts to measure tandem mass spectra for thousands of metabolite standards. Nevertheless, the majority of spectra observed in clinical samples cannot be unambiguously matched to known structures. Deep learning approaches to small-molecule structure elucidation have surprisingly failed to rival classical statistical methods, which we hypothesize is due to the lack of in-domain knowledge incorporated into current neural network architectures. Here we introduce a neural network-driven workflow for untargeted metabolomics, Metabolite Inference with Spectrum Transformers (MIST), to annotate tandem mass spectra peaks with chemical structures. Unlike existing approaches, MIST incorporates domain insights into its architecture by encoding peaks with their chemical formula representations, implicitly featurizing pairwise neutral losses and training the network to additionally predict substructure fragments. MIST performs favorably compared with both standard neural architectures and the state-of-the-art kernel method on the task of fingerprint prediction for over 70% of metabolite standards and retrieves 66% of metabolites with equal or improved accuracy, with 29% strictly better. We further demonstrate the utility of MIST by suggesting potential dipeptide and alkaloid structures for differentially abundant spectra found in an inflammatory bowel disease patient cohort.
</summary>
<dc:date>2023-08-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>QMugs 1.1: Quantum mechanical properties of organic compounds commonly encountered in reactivity datasets</title>
<link href="https://hdl.handle.net/1721.1/165430" rel="alternate"/>
<author>
<name>Neeser, Rebecca M</name>
</author>
<author>
<name>Isert, Clemens</name>
</author>
<author>
<name>Stuyver, Thijs</name>
</author>
<author>
<name>Schneider, Gisbert</name>
</author>
<author>
<name>Coley, Connor W</name>
</author>
<id>https://hdl.handle.net/1721.1/165430</id>
<updated>2026-04-15T03:05:10Z</updated>
<published>2023-08-01T00:00:00Z</published>
<summary type="text">QMugs 1.1: Quantum mechanical properties of organic compounds commonly encountered in reactivity datasets
Neeser, Rebecca M; Isert, Clemens; Stuyver, Thijs; Schneider, Gisbert; Coley, Connor W
Here, the Quantum Mechanical Properties of Drug-like Molecules (QMugs) dataset is expanded to facilitate its use as training data for surrogate machine learning models to predict quantum mechanical properties for tasks related to chemical reactivity. Small molecules from reaction databases as well as charged and boron-containing compounds from ChEMBL were added. Each of these compounds was passed through a pipeline of MMFF94s/UFF conformer generation, followed by GFN2-xTB optimization and finally a density functional theory single-point calculation at the ωB97X-D/def2-SVP level of theory. In total, 71,632 new molecules were evaluated in this manner. Steric (SASA) and dispersion (P int) descriptors were computed at the semiempirical GFN2-xTB level of theory for the lowest energy conformer of all species in the enlarged QMugs dataset. The expanded dataset aims to facilitate the construction of surrogate models of much broader scope than the original QMugs dataset which was limited to biologically active compounds.
</summary>
<dc:date>2023-08-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Americas’ Transportation: a Cross-country Comparison</title>
<link href="https://hdl.handle.net/1721.1/165429" rel="alternate"/>
<author>
<name>Ruiz Peraza, Vivian Andrea</name>
</author>
<author>
<name>Dayrell Mendonça, Guilherme</name>
</author>
<author>
<name>Villena Bayona, José Andrés</name>
</author>
<id>https://hdl.handle.net/1721.1/165429</id>
<updated>2026-04-15T03:25:50Z</updated>
<published>2026-04-14T00:00:00Z</published>
<summary type="text">The Americas’ Transportation: a Cross-country Comparison
Ruiz Peraza, Vivian Andrea; Dayrell Mendonça, Guilherme; Villena Bayona, José Andrés
The road freight mode is the backbone of the national transportation systems in the Americas. Each country has different characteristics that have a direct impact on how transportation is procured and managed in the region. This paper conducted a cross-country comparison analysis of the most significant road freight transport systems of Latin America (Brazil, Argentina, Colombia and Mexico) and North America (United States) based on the new proposed concept of Truck Transport Performance Index (TTPI). The objective is to provide practitioners and researchers an extensive overview of the main transportation practices regarding procurement, truck drivers’ labour market, innovation, cost management, environmental topics and public policies. Semi-structured interviews with main transportation stakeholders such as carriers' companies, multinationals and transportation agencies conducted and final results presented based on qualitative coding methodology.
</summary>
<dc:date>2026-04-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Behavioral flexibility is associated with changes in structure and function distributed across a frontal cortical network in macaques</title>
<link href="https://hdl.handle.net/1721.1/165428" rel="alternate"/>
<author>
<name>Sallet, Jérôme</name>
</author>
<author>
<name>Noonan, MaryAnn P</name>
</author>
<author>
<name>Thomas, Adam</name>
</author>
<author>
<name>O’Reilly, Jill X</name>
</author>
<author>
<name>Anderson, Jesper</name>
</author>
<author>
<name>Papageorgiou, Georgios K</name>
</author>
<author>
<name>Neubert, Franz X</name>
</author>
<author>
<name>Ahmed, Bashir</name>
</author>
<author>
<name>Smith, Jackson</name>
</author>
<author>
<name>Bell, Andrew H</name>
</author>
<author>
<name>Buckley, Mark J</name>
</author>
<author>
<name>Roumazeilles, Léa</name>
</author>
<author>
<name>Cuell, Steven</name>
</author>
<author>
<name>Walton, Mark E</name>
</author>
<author>
<name>Krug, Kristine</name>
</author>
<author>
<name>Mars, Rogier B</name>
</author>
<author>
<name>Rushworth, Matthew FS</name>
</author>
<id>https://hdl.handle.net/1721.1/165428</id>
<updated>2026-04-15T03:06:58Z</updated>
<published>2020-05-26T00:00:00Z</published>
<summary type="text">Behavioral flexibility is associated with changes in structure and function distributed across a frontal cortical network in macaques
Sallet, Jérôme; Noonan, MaryAnn P; Thomas, Adam; O’Reilly, Jill X; Anderson, Jesper; Papageorgiou, Georgios K; Neubert, Franz X; Ahmed, Bashir; Smith, Jackson; Bell, Andrew H; Buckley, Mark J; Roumazeilles, Léa; Cuell, Steven; Walton, Mark E; Krug, Kristine; Mars, Rogier B; Rushworth, Matthew FS
One of the most influential accounts of central orbitofrontal cortex—that it mediates behavioral flexibility—has been challenged by the finding that discrimination reversal in macaques, the classic test of behavioral flexibility, is unaffected when lesions are made by excitotoxin injection rather than aspiration. This suggests that the critical brain circuit mediating behavioral flexibility in reversal tasks lies beyond the central orbitofrontal cortex. To determine its identity, a group of nine macaques were taught discrimination reversal learning tasks, and its impact on gray matter was measured. Magnetic resonance imaging scans were taken before and after learning and compared with scans from two control groups, each comprising 10 animals. One control group learned discrimination tasks that were similar but lacked any reversal component, and the other control group engaged in no learning. Gray matter changes were prominent in posterior orbitofrontal cortex/anterior insula but were also found in three other frontal cortical regions: lateral orbitofrontal cortex (orbital part of area 12 [12o]), cingulate cortex, and lateral prefrontal cortex. In a second analysis, neural activity in posterior orbitofrontal cortex/anterior insula was measured at rest, and its pattern of coupling with the other frontal cortical regions was assessed. Activity coupling increased significantly in the reversal learning group in comparison with controls. In a final set of experiments, we used similar structural imaging procedures and analyses to demonstrate that aspiration lesion of central orbitofrontal cortex, of the type known to affect discrimination learning, affected structure and activity in the same frontal cortical circuit. The results identify a distributed frontal cortical circuit associated with behavioral flexibility.
</summary>
<dc:date>2020-05-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>The effect of decay and lexical uncertainty on processing long-distance dependencies in reading</title>
<link href="https://hdl.handle.net/1721.1/165427" rel="alternate"/>
<author>
<name>Stone, Kate</name>
</author>
<author>
<name>von der Malsburg, Titus</name>
</author>
<author>
<name>Vasishth, Shravan</name>
</author>
<id>https://hdl.handle.net/1721.1/165427</id>
<updated>2026-04-15T03:05:33Z</updated>
<published>2020-12-17T00:00:00Z</published>
<summary type="text">The effect of decay and lexical uncertainty on processing long-distance dependencies in reading
Stone, Kate; von der Malsburg, Titus; Vasishth, Shravan
To make sense of a sentence, a reader must keep track of dependent relationships between words, such as between a verb and its particle (e.g. turn the music down). In languages such as German, verb-particle dependencies often span long distances, with the particle only appearing at the end of the clause. This means that it may be necessary to process a large amount of intervening sentence material before the full verb of the sentence is known. To facilitate processing, previous studies have shown that readers can preactivate the lexical information of neighbouring upcoming words, but less is known about whether such preactivation can be sustained over longer distances. We asked the question, do readers preactivate lexical information about long-distance verb particles? In one self-paced reading and one eye tracking experiment, we delayed the appearance of an obligatory verb particle that varied only in the predictability of its lexical identity. We additionally manipulated the length of the delay in order to test two contrasting accounts of dependency processing: that increased distance between dependent elements may sharpen expectation of the distant word and facilitate its processing (an antilocality effect), or that it may slow processing via temporal activation decay (a locality effect). We isolated decay by delaying the particle with a neutral noun modifier containing no information about the identity of the upcoming particle, and no known sources of interference or working memory load. Under the assumption that readers would preactivate the lexical representations of plausible verb particles, we hypothesised that a smaller number of plausible particles would lead to stronger preactivation of each particle, and thus higher predictability of the target. This in turn should have made predictable target particles more resistant to the effects of decay than less predictable target particles. The eye tracking experiment provided evidence that higher predictability did facilitate reading times, but found evidence against any effect of decay or its interaction with predictability. The self-paced reading study provided evidence against any effect of predictability or temporal decay, or their interaction. In sum, we provide evidence from eye movements that readers preactivate long-distance lexical content and that adding neutral sentence information does not induce detectable decay of this activation. The findings are consistent with accounts suggesting that delaying dependency resolution may only affect processing if the intervening information either confirms expectations or adds to working memory load, and that temporal activation decay alone may not be a major predictor of processing time.
</summary>
<dc:date>2020-12-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>FrameAxis: characterizing microframe bias and intensity with word embedding</title>
<link href="https://hdl.handle.net/1721.1/165426" rel="alternate"/>
<author>
<name>Kwak, Haewoon</name>
</author>
<author>
<name>An, Jisun</name>
</author>
<author>
<name>Jing, Elise</name>
</author>
<author>
<name>Ahn, Yong-Yeol</name>
</author>
<id>https://hdl.handle.net/1721.1/165426</id>
<updated>2026-04-15T03:05:14Z</updated>
<published>2021-07-22T00:00:00Z</published>
<summary type="text">FrameAxis: characterizing microframe bias and intensity with word embedding
Kwak, Haewoon; An, Jisun; Jing, Elise; Ahn, Yong-Yeol
Framing is a process of emphasizing a certain aspect of an issue over the others, nudging readers or listeners towards different positions on the issue even without making a biased argument. Here, we propose FrameAxis, a method for characterizing documents by identifying the most relevant semantic axes (“microframes”) that are overrepresented in the text using word embedding. Our unsupervised approach can be readily applied to large datasets because it does not require manual annotations. It can also provide nuanced insights by considering a rich set of semantic axes. FrameAxis is designed to quantitatively tease out two important dimensions of how microframes are used in the text. Microframe bias captures how biased the text is on a certain microframe, and microframe intensity shows how prominently a certain microframe is used. Together, they offer a detailed characterization of the text. We demonstrate that microframes with the highest bias and intensity align well with sentiment, topic, and partisan spectrum by applying FrameAxis to multiple datasets from restaurant reviews to political news. The existing domain knowledge can be incorporated into FrameAxis by using custom microframes and by using FrameAxis as an iterative exploratory analysis instrument. Additionally, we propose methods for explaining the results of FrameAxis at the level of individual words and documents. Our method may accelerate scalable and sophisticated computational analyses of framing across disciplines.
</summary>
<dc:date>2021-07-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design of a Two-echelon Last-mile Delivery Model</title>
<link href="https://hdl.handle.net/1721.1/165425" rel="alternate"/>
<author>
<name>Piña-Pardo, Juan Carlos</name>
</author>
<author>
<name>Moreno, Matheo</name>
</author>
<author>
<name>Bastos Barros, Miguel</name>
</author>
<author>
<name>Lapria Faria, Alexandre Vinicius</name>
</author>
<id>https://hdl.handle.net/1721.1/165425</id>
<updated>2026-04-15T03:25:56Z</updated>
<published>2026-04-14T00:00:00Z</published>
<summary type="text">Design of a Two-echelon Last-mile Delivery Model
Piña-Pardo, Juan Carlos; Moreno, Matheo; Bastos Barros, Miguel; Lapria Faria, Alexandre Vinicius
Due to high city congestion and growing demand for last-mile delivery services, several companies have been implemented two-echelon distribution strategies over the past few years. Notably, the installation of urban transshipment points has gained increasing attention, used by logistics operators to transfer goods from large freight trucks to smaller, more agile vehicles for last-mile delivery. Nevertheless, the main challenge is how to deciding the number and location of these facilities in the presence of demand uncertainty. In this paper, we develop a two-stage stochastic program to design two-echelon last-mile delivery networks under demand uncertainty. This approach decomposes the problem into strategic decisions (facility location) and operational decisions (daily distribution of goods). We solve the model through the sample average approximation technique to address large-scale instances and estimate the optimal routing costs using continuous approximation methods. Using a real-world case study with more than 1,300 customers from New York City, our results provide several managerial insights regarding the mix of transportation modes, facility location, and the impact of allowing the outsourcing of customer demand. We validate the results using a simulation-based approach that employs a deterministic Mixed-Integer Linear Program.
</summary>
<dc:date>2026-04-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Computer-aided structure redesign of high speed electromechanical systems for improved control</title>
<link href="https://hdl.handle.net/1721.1/165424" rel="alternate"/>
<author>
<name>Rai, Sudhendu.</name>
</author>
<id>https://hdl.handle.net/1721.1/165424</id>
<updated>2026-04-14T03:02:10Z</updated>
<published>1993-01-01T00:00:00Z</published>
<summary type="text">Computer-aided structure redesign of high speed electromechanical systems for improved control
Rai, Sudhendu.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1993; Includes bibliographical references (leaves 101).
</summary>
<dc:date>1993-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Demonstration of heat pipe self-deployment</title>
<link href="https://hdl.handle.net/1721.1/165421" rel="alternate"/>
<author>
<name>Woloshun, Keith Albert.</name>
</author>
<id>https://hdl.handle.net/1721.1/165421</id>
<updated>2026-04-14T03:04:34Z</updated>
<published>1986-01-01T00:00:00Z</published>
<summary type="text">Demonstration of heat pipe self-deployment
Woloshun, Keith Albert.
Thesis: M.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1986; Bibliography: leaves 109-112.
</summary>
<dc:date>1986-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>PETWORLD, an animal behavior system using rules</title>
<link href="https://hdl.handle.net/1721.1/165420" rel="alternate"/>
<author>
<name>Coderre, William H.</name>
</author>
<id>https://hdl.handle.net/1721.1/165420</id>
<updated>2026-04-14T03:05:12Z</updated>
<published>1986-01-01T00:00:00Z</published>
<summary type="text">PETWORLD, an animal behavior system using rules
Coderre, William H.
Thesis: B.S., Massachusetts Institute of Technology, Department of Electrical Engineering and Computer Science, 1986; Bibliography: leaves 34-35.
</summary>
<dc:date>1986-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>An active constrained layer damper for vibrational control of a cantilever beam</title>
<link href="https://hdl.handle.net/1721.1/165419" rel="alternate"/>
<author>
<name>Wright, Christopher Allen.</name>
</author>
<id>https://hdl.handle.net/1721.1/165419</id>
<updated>2026-04-14T03:05:10Z</updated>
<published>1985-01-01T00:00:00Z</published>
<summary type="text">An active constrained layer damper for vibrational control of a cantilever beam
Wright, Christopher Allen.
Thesis: B.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1985; Bibliography: leaf 25.
</summary>
<dc:date>1985-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Spectrometric temperature measurements of thermal radiators</title>
<link href="https://hdl.handle.net/1721.1/165418" rel="alternate"/>
<author>
<name>Hunter, Gordon Bruce.</name>
</author>
<id>https://hdl.handle.net/1721.1/165418</id>
<updated>2026-04-14T03:02:48Z</updated>
<published>1984-01-01T00:00:00Z</published>
<summary type="text">Spectrometric temperature measurements of thermal radiators
Hunter, Gordon Bruce.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Materials Science and Engineering, 1984; Vita.; Includes bibliographical references.
</summary>
<dc:date>1984-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>High angular momentum Rydberg atoms : the production and study</title>
<link href="https://hdl.handle.net/1721.1/165417" rel="alternate"/>
<author>
<name>Hulet, Randall Gardner.</name>
</author>
<id>https://hdl.handle.net/1721.1/165417</id>
<updated>2026-04-14T03:02:20Z</updated>
<published>1984-01-01T00:00:00Z</published>
<summary type="text">High angular momentum Rydberg atoms : the production and study
Hulet, Randall Gardner.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Physics, 1984; Includes bibliographical references.
</summary>
<dc:date>1984-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A general fluid dynamical theory of unstable spiral modes in disk-shaped galaxies.</title>
<link href="https://hdl.handle.net/1721.1/165416" rel="alternate"/>
<author>
<name>Pannatoni, Ronald Francis.</name>
</author>
<id>https://hdl.handle.net/1721.1/165416</id>
<updated>2026-04-14T03:02:34Z</updated>
<published>1979-01-01T00:00:00Z</published>
<summary type="text">A general fluid dynamical theory of unstable spiral modes in disk-shaped galaxies.
Pannatoni, Ronald Francis.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Mathematics, 1979; Vita.; Includes bibliographical references.
</summary>
<dc:date>1979-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Counseling nightline : developing a model for decision making for a student organization</title>
<link href="https://hdl.handle.net/1721.1/165415" rel="alternate"/>
<author>
<name>Warshaw, Meredith G.</name>
</author>
<id>https://hdl.handle.net/1721.1/165415</id>
<updated>2026-04-14T03:05:07Z</updated>
<published>1979-01-01T00:00:00Z</published>
<summary type="text">Counseling nightline : developing a model for decision making for a student organization
Warshaw, Meredith G.
Thesis: B.S., Massachusetts Institute of Technology, Department of Urban Studies and Planning, 1979
</summary>
<dc:date>1979-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cost-effectiveness analysis of urban transit alternatives.</title>
<link href="https://hdl.handle.net/1721.1/165414" rel="alternate"/>
<author>
<name>Rouleau, Eloi Marie.</name>
</author>
<id>https://hdl.handle.net/1721.1/165414</id>
<updated>2026-04-14T03:04:37Z</updated>
<published>1977-01-01T00:00:00Z</published>
<summary type="text">Cost-effectiveness analysis of urban transit alternatives.
Rouleau, Eloi Marie.
Thesis: M.S., Massachusetts Institute of Technology, Department of Civil Engineering, 1977; Bibliography: leaves 84-87.
</summary>
<dc:date>1977-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cooling of glazed solar collectors</title>
<link href="https://hdl.handle.net/1721.1/165413" rel="alternate"/>
<author>
<name>Suchon, Mark Theodore.</name>
</author>
<id>https://hdl.handle.net/1721.1/165413</id>
<updated>2026-04-14T03:05:06Z</updated>
<published>1976-01-01T00:00:00Z</published>
<summary type="text">Cooling of glazed solar collectors
Suchon, Mark Theodore.
Thesis: B.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1976; Includes bibliographical references.
</summary>
<dc:date>1976-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Primitives of BP (BP) modulo an invariant prime ideal.</title>
<link href="https://hdl.handle.net/1721.1/165412" rel="alternate"/>
<author>
<name>Moreira, Manuel Ricardo Falcão.</name>
</author>
<id>https://hdl.handle.net/1721.1/165412</id>
<updated>2026-04-14T03:02:36Z</updated>
<published>1975-01-01T00:00:00Z</published>
<summary type="text">Primitives of BP (BP) modulo an invariant prime ideal.
Moreira, Manuel Ricardo Falcão.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Mathematics, 1975; Vita.; Includes bibliographical references.
</summary>
<dc:date>1975-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Model based specification for developing safety-critical system-software</title>
<link href="https://hdl.handle.net/1721.1/165411" rel="alternate"/>
<author>
<name>Karasi, Anand K.
            (Anand Kumar),
            1975-</name>
</author>
<id>https://hdl.handle.net/1721.1/165411</id>
<updated>2026-04-14T03:04:28Z</updated>
<published>2000-01-01T00:00:00Z</published>
<summary type="text">Model based specification for developing safety-critical system-software
Karasi, Anand K.
            (Anand Kumar),
            1975-
Thesis: S.M., Massachusetts Institute of Technology, Technology and Policy Program, 2000; Includes bibliographical references (leaves 62-63).
</summary>
<dc:date>2000-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Introduction of scientific production methods in a hard rubber products plant</title>
<link href="https://hdl.handle.net/1721.1/165410" rel="alternate"/>
<author>
<name>Cooperstein, Benjamin.</name>
</author>
<author>
<name>Schmalz, George.</name>
</author>
<id>https://hdl.handle.net/1721.1/165410</id>
<updated>2026-04-14T03:04:57Z</updated>
<published>1936-01-01T00:00:00Z</published>
<summary type="text">Introduction of scientific production methods in a hard rubber products plant
Cooperstein, Benjamin.; Schmalz, George.
Thesis: B.S., Massachusetts Institute of Technology, Department of Business and Engineering Administration, 1936; Includes bibliographical references (leaf 53).
</summary>
<dc:date>1936-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Thermal contact resistance</title>
<link href="https://hdl.handle.net/1721.1/165409" rel="alternate"/>
<author>
<name>Henry, John J.
            (John Jewett),
            1938-</name>
</author>
<id>https://hdl.handle.net/1721.1/165409</id>
<updated>2026-04-14T03:02:26Z</updated>
<published>1964-01-01T00:00:00Z</published>
<summary type="text">Thermal contact resistance
Henry, John J.
            (John Jewett),
            1938-
Thesis: Sc. D., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1964; Vita.; Includes bibliographical references (leaves 54-61).
</summary>
<dc:date>1964-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Theory of time delay control and application to magnetic bearings</title>
<link href="https://hdl.handle.net/1721.1/165408" rel="alternate"/>
<author>
<name>Reddy, Suresh B.
            (Suresh Baddam),
            1965-</name>
</author>
<id>https://hdl.handle.net/1721.1/165408</id>
<updated>2026-04-14T03:02:43Z</updated>
<published>1992-01-01T00:00:00Z</published>
<summary type="text">Theory of time delay control and application to magnetic bearings
Reddy, Suresh B.
            (Suresh Baddam),
            1965-
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1992; Includes bibliographical references (leaves 318-325).
</summary>
<dc:date>1992-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Drive-by Environmental Sensing Strategy to Reach Optimal and Continuous Spatio-Temporal Coverage Using Local Transit Network</title>
<link href="https://hdl.handle.net/1721.1/165407" rel="alternate"/>
<author>
<name>Ariss, Mayar</name>
</author>
<author>
<name>Wang, An</name>
</author>
<author>
<name>Sabouri, Sadegh</name>
</author>
<author>
<name>Duarte, Fabio</name>
</author>
<author>
<name>Ratti, Carlo</name>
</author>
<id>https://hdl.handle.net/1721.1/165407</id>
<updated>2026-04-14T03:08:21Z</updated>
<published>2024-05-23T00:00:00Z</published>
<summary type="text">Drive-by Environmental Sensing Strategy to Reach Optimal and Continuous Spatio-Temporal Coverage Using Local Transit Network
Ariss, Mayar; Wang, An; Sabouri, Sadegh; Duarte, Fabio; Ratti, Carlo
Monitoring environmental features, such as air pollution, carbon dioxide emissions, noise, and heat, gives cities key data-driven insights to advise sustainable policies and city design. However, given the high variability of the environmental data, achieving good spatio-temporal resolution and coverage remains a major challenge. Even in well-monitored cities, such as Amsterdam, environmental sensors are usually placed in very few fixed locations, implying limited spatial coverage and an inability to adapt to changes in the urban environment. As cities evolve, they experience shifts in pollution sources, and fixed sensors might not adequately capture these changes without a costly and time-consuming reconfiguration process. To monitor the environmental qualities of Amsterdam’s roads, we present a “drive-by” sensing solution for a structured network of vehicles, meaning that sensors are designed to be deployed on buses and tramways, the trajectories and schedules of which are known. We propose a deployment strategy that combines the available fleets to reach optimal spatio-temporal coverage for different environmental features. For example, by optimizing the deployment of sensors on public transit vehicles, our proposal significantly enhances the monitoring of pollution-sensitive areas in Amsterdam. Depending on the desired spatio-temporal granularity and noting that one vehicle only hosts one sensor, the required number of sensors to be deployed on the structured network varies between 43 and 142, with the latter achieving the finest possible resolution.
</summary>
<dc:date>2024-05-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Seismic assessment of unreinforced masonry façades from images using macroelement-based modeling</title>
<link href="https://hdl.handle.net/1721.1/165406" rel="alternate"/>
<author>
<name>Ariss, Mayar</name>
</author>
<author>
<name>Pantoja-Rosero, Bryan German</name>
</author>
<author>
<name>Duarte, Fabio</name>
</author>
<author>
<name>Klimenka, Mikita</name>
</author>
<author>
<name>Ratti, Carlo</name>
</author>
<id>https://hdl.handle.net/1721.1/165406</id>
<updated>2026-04-14T03:08:23Z</updated>
<published>2025-08-14T00:00:00Z</published>
<summary type="text">Seismic assessment of unreinforced masonry façades from images using macroelement-based modeling
Ariss, Mayar; Pantoja-Rosero, Bryan German; Duarte, Fabio; Klimenka, Mikita; Ratti, Carlo
Despite the variability of urban infrastructure, unreinforced masonry buildings remain globally prevalent. Constructed from brick, hollow concrete blocks, stone, or other masonry materials, these structures account for a significant proportion of fatalities during seismic events—particularly in regions with limited access to early warning systems. Due to the complex behavior of masonry, accurately assessing structural vulnerabilities is highly dependent on the chosen modeling strategy. Yet, scalable, cost-effective approaches based on simple RGB imagery can still offer valuable insights. In this context, building on a previously developed digitalization methodology, this study proposes an automated, image-based framework for the rapid, non-invasive seismic evaluation of façades, addressing important research gaps in disaster resilience. The framework links image data with structural simulation by extracting visual and geometric features and translating them into consistent macroelement models using computer vision techniques, enabling nonlinear analyses under in-plane cyclic loading. The adopted numerical strategy has been extensively validated in prior work, with predictions closely aligning with experimental results. While the outcomes are predictive rather than diagnostic, future integration with publicly accessible urban imagery may enable the development of real-time, cross-border seismic risk maps.
</summary>
<dc:date>2025-08-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Mars 2020 Perseverance SuperCam Perspective on the Igneous Nature of the Máaz Formation at Jezero Crater and Link With Séítah, Mars</title>
<link href="https://hdl.handle.net/1721.1/165405" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165405</id>
<updated>2026-04-14T03:08:27Z</updated>
<published>2022-11-01T00:00:00Z</published>
<summary type="text">A Mars 2020 Perseverance SuperCam Perspective on the Igneous Nature of the Máaz Formation at Jezero Crater and Link With Séítah, Mars
The Máaz formation consists of the first lithologies in Jezero crater analyzed by the Mars 2020 Perseverance rover. This formation, investigated from Sols (Martian days) 1 to 201 and from Sols 343 to 382, overlies the Séítah formation (previously described as an olivine-rich cumulate) and was initially suggested to represent an igneous crater floor unit based on orbital analyses. Using SuperCam data, we conducted a detailed textural, chemical, and mineralogical analyses of the Máaz formation and the Content member of the Séítah formation. We conclude that the Máaz formation and the Content member are igneous and consist of different lava flows and/or possibly pyroclastic flows with complex textures, including vesicular and non-vesicular rocks with different grain sizes. The Máaz formation rocks exhibit some of the lowest Mg# (=molar 100 × MgO/MgO + FeO) of all Martian igneous rocks analyzed so far (including meteorites and surface rocks) and show similar basaltic to basaltic-andesitic compositions. Their mineralogy is dominated by Fe-rich augite to possibly ferrosilite and plagioclase, and minor phases such as Fe-Ti oxides and Si-rich phases. They show a broad diversity of both compositions and textures when compared to Martian meteorites and other surface rocks. The different Máaz and Content lava or pyroclastic flows all originate from the same parental magma and/or the same magmatic system, but are not petrogenetically linked to the Séítah formation. The study of returned Máaz samples in Earth-based laboratories will help constrain the formation of these rocks, calibrate Martian crater counting, and overall, improve our understanding of magmatism on Mars.
</summary>
<dc:date>2022-11-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Compositions and Interior Structures of the Large Moons of Uranus and Implications for Future Spacecraft Observations</title>
<link href="https://hdl.handle.net/1721.1/165404" rel="alternate"/>
<author>
<name>Castillo‐Rogez, Julie</name>
</author>
<author>
<name>Weiss, Benjamin</name>
</author>
<author>
<name>Beddingfield, Chloe</name>
</author>
<author>
<name>Biersteker, John</name>
</author>
<author>
<name>Cartwright, Richard</name>
</author>
<author>
<name>Goode, Allison</name>
</author>
<author>
<name>Melwani Daswani, Mohit</name>
</author>
<author>
<name>Neveu, Marc</name>
</author>
<id>https://hdl.handle.net/1721.1/165404</id>
<updated>2026-04-11T07:29:15Z</updated>
<published>2022-12-22T00:00:00Z</published>
<summary type="text">Compositions and Interior Structures of the Large Moons of Uranus and Implications for Future Spacecraft Observations
Castillo‐Rogez, Julie; Weiss, Benjamin; Beddingfield, Chloe; Biersteker, John; Cartwright, Richard; Goode, Allison; Melwani Daswani, Mohit; Neveu, Marc
The five large moons of Uranus are important targets for future spacecraft missions. To motivate&#13;
and inform the exploration of these moons, we model their internal evolution, present-day physical structures,&#13;
and geochemical and geophysical signatures that may be measured by spacecraft. We predict that if the moons&#13;
preserved liquid until present, it is likely in the form of residual oceans less than 30 km thick in Ariel, Umbriel,&#13;
and less than 50 km in Titania, and Oberon. The preservation of liquid strongly depends on material properties&#13;
and, potentially, on dynamical circumstances that are presently unknown. Miranda is unlikely to host liquid at&#13;
present unless it experienced tidal heating a few tens of million years ago. We find that since the thin residual&#13;
layers may be hypersaline, their induced magnetic fields could be detectable by future spacecraft-based&#13;
magnetometers. However, if the ocean is maintained primarily by ammonia, and thus well below the water&#13;
freezing point, then its electrical conductivity may be too small to be detectable by spacecraft. Lastly, our&#13;
calculated tidal Love number (k2) and dissipation factor (Q) are consistent with the Q/k2 values previously&#13;
inferred from dynamical evolution models. In particular, we find that the low Q/k2 estimated for Titania&#13;
supports the hypothesis that Titania currently holds an ocean.
</summary>
<dc:date>2022-12-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Intermodel Spread in Walker Circulation Responses Linked to Spread in Moist Stability and Radiation Responses</title>
<link href="https://hdl.handle.net/1721.1/165403" rel="alternate"/>
<author>
<name>Duffy, Margaret L</name>
</author>
<author>
<name>O’Gorman, Paul A</name>
</author>
<id>https://hdl.handle.net/1721.1/165403</id>
<updated>2026-04-11T07:29:18Z</updated>
<published>2023-01-17T00:00:00Z</published>
<summary type="text">Intermodel Spread in Walker Circulation Responses Linked to Spread in Moist Stability and Radiation Responses
Duffy, Margaret L; O’Gorman, Paul A
The response of the Pacific Walker circulation (WC) to long‐term warming remains uncertain. Here, we diagnose contributions to the WC response in comprehensive and idealized general circulation model (GCM) simulations. We find that the spread in WC response is substantial across both the Coupled Model Intercomparison Project (CMIP6) and the Atmospheric Model Intercomparison Project (AMIP) models, implicating differences in atmospheric models in the spread in projected WC strength. Using a moist static energy (MSE) budget, we evaluate the contributions to changes in the WC strength related to changes in gross moist stability (GMS), horizontal MSE advection, radiation, and surface fluxes. We find that the multimodel mean WC weakening is mostly related to changes in GMS and radiation. Furthermore, the &lt;jats:italic&gt;spread&lt;/jats:italic&gt; in WC response is related to the spread in GMS and radiation responses. The GMS response is potentially sensitive to parameterized convective entrainment which can affect lapse rates and the depth of convection. We thus investigate the role of entrainment in setting the GMS response by varying the entrainment rate in an idealized GCM. The idealized GCM is run with a simplified Betts‐Miller convection scheme, modified to represent entrainment. The weakening of the WC with warming in the idealized GCM is dampened when higher entrainment rates are used. However, the spread in GMS responses due to differing entrainment rates is much smaller than the spread in GMS responses across CMIP6 models. Therefore, further work is needed to understand the large spread in GMS responses across CMIP6 and AMIP models.
</summary>
<dc:date>2023-01-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Spatial Variability of Movement, Structure, and Formation of Warm Core Rings in the Northwest Atlantic Slope Sea</title>
<link href="https://hdl.handle.net/1721.1/165402" rel="alternate"/>
<author>
<name>Silver, Adrienne</name>
</author>
<author>
<name>Gangopadhyay, Avijit</name>
</author>
<author>
<name>Gawarkiewicz, Glen</name>
</author>
<author>
<name>Andres, Magdalena</name>
</author>
<author>
<name>Flierl, Glenn</name>
</author>
<author>
<name>Clark, Jenifer</name>
</author>
<id>https://hdl.handle.net/1721.1/165402</id>
<updated>2026-04-11T07:29:16Z</updated>
<published>2022-08-16T00:00:00Z</published>
<summary type="text">Spatial Variability of Movement, Structure, and Formation of Warm Core Rings in the Northwest Atlantic Slope Sea
Silver, Adrienne; Gangopadhyay, Avijit; Gawarkiewicz, Glen; Andres, Magdalena; Flierl, Glenn; Clark, Jenifer
Gulf Stream Warm Core Rings (WCRs) have important influences on the New England Shelf and marine ecosystems. A 10‐year (2011–2020) WCR dataset that tracks weekly WCR locations and surface areas is used here to identify the rings' path and characterize their movement between 55 and 75°W. The WCR dataset reveals a very narrow band between 66 and 71°W along which rings travel almost due west along ∼39°N across isobaths – the “Ring Corridor.” Then, west of the corridor, the mean path turns southwestward, paralleling the shelfbreak. The average ring translation speed along the mean path is 5.9 cm s&lt;jats:sup&gt;−1&lt;/jats:sup&gt;. Long‐lived rings (lifespan &amp;gt;150 days) tend to occupy the region west of the New England Seamount Chain (NESC) whereas short‐lived rings (lifespan &amp;lt;150 days) tend to be more broadly distributed. WCR vertical structures, analyzed using available Argo float profiles indicate that rings that are formed to the west of the NESC have shallower thermoclines than those formed to the east. This tendency may be due to different WCR formation processes that are observed to occur along different sections of the Gulf Stream. WCRs formed to the east of the NESC tend to form from a pinch‐off mechanism incorporating cores of Sargasso Sea water and a perimeter of Gulf Stream water. WCRs that form to the west of the NESC, form from a process called an aneurysm. WCRs formed through aneurysms comprise water mostly from the northern half of the Gulf Stream and are smaller than the classic pinch‐off rings.
</summary>
<dc:date>2022-08-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Paleomagnetic Constraint on the Age of the Shyok Suture Zone</title>
<link href="https://hdl.handle.net/1721.1/165401" rel="alternate"/>
<author>
<name>Martin, Craig R</name>
</author>
<author>
<name>Jagoutz, Oliver</name>
</author>
<author>
<name>Upadhyay, Rajeev</name>
</author>
<author>
<name>van Tongeren, Jill A</name>
</author>
<author>
<name>Mueller, Paul A</name>
</author>
<author>
<name>Weiss, Benjamin P</name>
</author>
<id>https://hdl.handle.net/1721.1/165401</id>
<updated>2026-04-11T07:29:26Z</updated>
<published>2023-10-16T00:00:00Z</published>
<summary type="text">Paleomagnetic Constraint on the Age of the Shyok Suture Zone
Martin, Craig R; Jagoutz, Oliver; Upadhyay, Rajeev; van Tongeren, Jill A; Mueller, Paul A; Weiss, Benjamin P
The India‐Eurasia collision is a key case study for understanding the influence of plate tectonic processes on Earth's crust, atmosphere, hydrosphere, and biosphere. However, the timing of the final India‐Eurasia continental collision is debated due to significant uncertainty in the age of the collision between the Kohistan‐Ladakh arc (KLA) and Eurasia along the Shyok suture zone. Here we present paleomagnetic results that constrain the Karakoram terrane in northwest India to a paleolatitude of 19.9 ± 8.9°N between 93 and 75 million years ago (Ma). Our results show that the Karakoram terrane was situated on the southern margin of Eurasia in the Late‐Cretaceous. Our results indicate that the KLA and Eurasian continent had a not converged until &amp;lt;61.6 Ma, placing a Paleocene older limit on the age of final closure of the Shyok suture zone. This suggests that the India‐Eurasia collision in northwestern India likely occurred after the closure of the oceanic basin between the KLA and Eurasia. The Paleocene collision event affecting India that has been widely interpreted to represent final India‐Eurasia collision instead records the arc‐continent collision between the KLA and the northern edge of India prior to final India‐Eurasia collision. Final India‐Eurasia collision in northwest India most likely occurred after the closure of the oceanic basin between the KLA and Eurasia.
</summary>
<dc:date>2023-10-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>High‐Pressure Mechanical Properties of Talc: Implications for Fault Strength and Slip Processes</title>
<link href="https://hdl.handle.net/1721.1/165400" rel="alternate"/>
<author>
<name>Boneh, Y</name>
</author>
<author>
<name>Pec, M</name>
</author>
<author>
<name>Hirth, G</name>
</author>
<id>https://hdl.handle.net/1721.1/165400</id>
<updated>2026-04-11T07:29:13Z</updated>
<published>2023-03-15T00:00:00Z</published>
<summary type="text">High‐Pressure Mechanical Properties of Talc: Implications for Fault Strength and Slip Processes
Boneh, Y; Pec, M; Hirth, G
The hydrous mineral talc is stable over a relatively large P‐T field and can form due to fluid migration and metamorphic reactions in mafic and ultramafic rocks and in faults along plate boundary interfaces. Talc is known to be one of the weakest minerals, making it potentially important for the deformation dynamics and seismic characteristics of faults. However, little is known about talc's mechanical properties at high temperatures under confining pressures greater than 0.5 GPa. We present results of deformation experiments on natural talc cylinders exploring talc rheology under 0.5–1.5 GPa and 400–700°C, P‐T conditions simulating conditions at deep faults and subducted slab interface. At these pressures, the strength of talc is highly temperature‐dependent where the thermal weakening is associated with an increased tendency for localization. The strength of talc and friction coefficient inferred from Mohr circle analysis is between 0.13 at 400°C to ∼0.01 at 700°C. Strength comparison with other phyllosilicates highlights talc as the weakest mineral, a factor of ∼3–4 weaker than antigorite and a factor of ∼2 weaker than chlorite. The observed friction coefficients for talc are consistent with those inferred for subducted slabs and the San Andreas fault. We conclude that the presence of talc may explain the low strength of faults and of subducted slab interface at depths where transient slow slip events occur.
</summary>
<dc:date>2023-03-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Microseismic Constraints on the Mechanical State of the North Anatolian Fault Zone 13 Years After the 1999 M7.4 Izmit Earthquake</title>
<link href="https://hdl.handle.net/1721.1/165399" rel="alternate"/>
<author>
<name>Beaucé, Eric</name>
</author>
<author>
<name>van der Hilst, Robert D</name>
</author>
<author>
<name>Campillo, Michel</name>
</author>
<id>https://hdl.handle.net/1721.1/165399</id>
<updated>2026-04-11T07:29:10Z</updated>
<published>2022-09-07T00:00:00Z</published>
<summary type="text">Microseismic Constraints on the Mechanical State of the North Anatolian Fault Zone 13 Years After the 1999 M7.4 Izmit Earthquake
Beaucé, Eric; van der Hilst, Robert D; Campillo, Michel
The 17 August 1999 Mw7.4 Izmit earthquake ruptured the western section of the North Anatolian Fault Zone and strongly altered the fault zone properties and stress field. Consequences of the co- and post-seismic stress changes were seen in the spatio-temporal evolution of the seismicity and in the surface slip rates. Thirteen years after the Izmit earthquake, in 2012, the seismic network Dense Array for North Anatolia (DANA) was deployed for 1.5 years. We built a new catalog of microseismicity (M &lt; 2) by applying our automated detection and location method to the DANA data set. Our method combines a systematic backprojection of the seismic wavefield and template matching. We analyzed the statistical properties of the catalog by computing the Gutenberg-Richter b-value and by quantifying the amount of temporal clustering in groups of nearby earthquakes. We found that the microseismicity mainly occurs off the main fault and that the most active regions are the Lake Sapanca step-over and near the Akyazi fault. Based on previous studies, we interpreted the b-values and temporal clustering (a) as indicating that the Akyazi seismicity is occurring in high background stresses and is driven by the Izmit earthquake residual stresses, and (b) as suggesting evidence that an intricate combination of seismic and aseismic slip was taking place on heterogeneous faults at the eastern Lake Sapanca, near the brittle-ductile transition. Combined with geodetic evidence for enhanced north-south extension around Lake Sapanca following the Izmit earthquake, the seismicity supports the possibility of slow slip at depth in the step-over.
</summary>
<dc:date>2022-09-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Higher‐Resolution Tropopause Folding Accounts for More Stratospheric Ozone Intrusions</title>
<link href="https://hdl.handle.net/1721.1/165398" rel="alternate"/>
<author>
<name>Bartusek, Samuel</name>
</author>
<author>
<name>Wu, Yutian</name>
</author>
<author>
<name>Ting, Mingfang</name>
</author>
<author>
<name>Zheng, Cheng</name>
</author>
<author>
<name>Fiore, Arlene</name>
</author>
<author>
<name>Sprenger, Michael</name>
</author>
<author>
<name>Flemming, Johannes</name>
</author>
<id>https://hdl.handle.net/1721.1/165398</id>
<updated>2026-04-11T07:29:04Z</updated>
<published>2023-04-23T00:00:00Z</published>
<summary type="text">Higher‐Resolution Tropopause Folding Accounts for More Stratospheric Ozone Intrusions
Bartusek, Samuel; Wu, Yutian; Ting, Mingfang; Zheng, Cheng; Fiore, Arlene; Sprenger, Michael; Flemming, Johannes
Ozone in the troposphere is a pollutant and greenhouse gas, and it is crucial to better understand its transport from the ozone-rich stratosphere. Tropopause folding, wherein stratospheric air intrudes downward into the troposphere, enables stratosphere-to-troposphere ozone transport (STT). However, systematic analysis of the relationship between folding and tropospheric ozone, using data that can both capture folding's spatial scales and accurately represent tropospheric chemistry, is limited. Here, we compare folding in high-resolution reanalysis ERA5 (0.25° horizontal, &lt;21 hPa vertical) and low-resolution chemical reanalysis CAMSRA (0.75°, &lt;40 hPa), against CAMSRA ozone, over 1 year. Folding becomes dramatically more frequent at high resolution, with vertical resolution overwhelmingly responsible. Deeper, more filamentary folding is almost entirely unrepresented at low resolution. Higher-resolution folding is better-correlated with tropospheric ozone (especially along midlatitude storm tracks, where deep folding is most common); STT is therefore likely more attributable to tropopause folding than coarsely-resolved folding can capture.
</summary>
<dc:date>2023-04-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Phosphine in the Venusian Atmosphere: A Strict Upper Limit From SOFIA GREAT Observations</title>
<link href="https://hdl.handle.net/1721.1/165397" rel="alternate"/>
<author>
<name>Cordiner, MA</name>
</author>
<author>
<name>Villanueva, GL</name>
</author>
<author>
<name>Wiesemeyer, H</name>
</author>
<author>
<name>Milam, SN</name>
</author>
<author>
<name>de Pater, I</name>
</author>
<author>
<name>Moullet, A</name>
</author>
<author>
<name>Aladro, R</name>
</author>
<author>
<name>Nixon, CA</name>
</author>
<author>
<name>Thelen, AE</name>
</author>
<author>
<name>Charnley, SB</name>
</author>
<author>
<name>Stutzki, J</name>
</author>
<author>
<name>Kofman, V</name>
</author>
<author>
<name>Faggi, S</name>
</author>
<author>
<name>Liuzzi, G</name>
</author>
<author>
<name>Cosentino, R</name>
</author>
<author>
<name>McGuire, BA</name>
</author>
<id>https://hdl.handle.net/1721.1/165397</id>
<updated>2026-04-11T07:29:19Z</updated>
<published>2022-10-21T00:00:00Z</published>
<summary type="text">Phosphine in the Venusian Atmosphere: A Strict Upper Limit From SOFIA GREAT Observations
Cordiner, MA; Villanueva, GL; Wiesemeyer, H; Milam, SN; de Pater, I; Moullet, A; Aladro, R; Nixon, CA; Thelen, AE; Charnley, SB; Stutzki, J; Kofman, V; Faggi, S; Liuzzi, G; Cosentino, R; McGuire, BA
The presence of phosphine (PH3) in the atmosphere of Venus was reported by Greaves et al. (2021, https://doi.org/10.1038/s41550-020-1174-4), based on observations of the J = 1–0 transition at 267 GHz using ground-based, millimeter-wave spectroscopy. This unexpected discovery presents a challenge for our understanding of Venus's atmosphere, and has led to a reappraisal of the possible sources and sinks of atmospheric phosphorous-bearing gases. Here we present results from a search for PH3 on Venus using the German REceiver for Astronomy at Terahertz Frequencies instrument aboard the Stratospheric Observatory for Infrared Astronomy aircraft, over three flights conducted in November 2021. Multiple PH3 transitions were targeted at frequencies centered on 533 and 1,067 GHz, but no evidence for atmospheric PH3 was detected. Through radiative transfer modeling, we derived a disk-averaged upper limit on the PH3 abundance of 0.8 ppb in the altitude range 75–110 km, which is more stringent than previous ground-based studies.
</summary>
<dc:date>2022-10-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Crystal Shape Control on the Repacking and Jamming of Crystal‐Rich Mushes</title>
<link href="https://hdl.handle.net/1721.1/165396" rel="alternate"/>
<author>
<name>Hoyos, Susana</name>
</author>
<author>
<name>Florez, Darien</name>
</author>
<author>
<name>Pec, Matej</name>
</author>
<author>
<name>Huber, Christian</name>
</author>
<id>https://hdl.handle.net/1721.1/165396</id>
<updated>2026-04-11T07:29:11Z</updated>
<published>2022-09-22T00:00:00Z</published>
<summary type="text">Crystal Shape Control on the Repacking and Jamming of Crystal‐Rich Mushes
Hoyos, Susana; Florez, Darien; Pec, Matej; Huber, Christian
The rheology of crustal mushes is a crucial parameter controlling melt segregation and magma flow. However, the relations between mush dynamics and crystal size and shape distribution remain poorly understood because of the complexity of melt‐crystal and crystal‐crystal interactions. We performed analog experiments to characterize the mechanisms that control pore space reduction associated with repacking. Three suspensions of monodisperse particles with different geometries and aspect ratios (1:1, 2:1, 4:1) in a viscous fluid were tested. Our results show that particle aspect ratios strongly control the melt extraction processes. We identify two competing mechanisms that enable melt extraction at grain scale. The first mechanism leads to continuous deformation and melt extraction and is associated with “diffuse” frictional dissipation between neighboring particles. The second is stochastic, localized, and nearly instantaneous and is associated with the development and destruction of force chains percolating through the granular assembly.
</summary>
<dc:date>2022-09-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Abundances of Uranium and Thorium Elements in Earth Estimated by Geoneutrino Spectroscopy</title>
<link href="https://hdl.handle.net/1721.1/165395" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165395</id>
<updated>2026-05-02T03:12:56Z</updated>
<published>2022-08-11T00:00:00Z</published>
<summary type="text">Abundances of Uranium and Thorium Elements in Earth Estimated by Geoneutrino Spectroscopy
The decay of the primordial isotopes 238U, 235U, 232Th, and 40K has contributed to the terrestrial heat budget throughout the Earth's history. Hence, the individual abundance of those isotopes are key parameters in reconstructing contemporary Earth models. The geoneutrinos produced by the radioactive decays of uranium and thorium have been observed with the Kamioka Liquid-Scintillator Antineutrino Detector (KamLAND). Those measurements have been improved with more than 18-year observation time, and improvement in detector background levels mainly with an 8-year nearly reactor-free period, which now permit spectroscopy with geoneutrinos. Our results yield the first constraint on both uranium and thorium heat contributions. The KamLAND result is consistent with geochemical estimations based on elemental abundances of chondritic meteorites and mantle peridotites. The High-Q model is disfavored at 99.76% C.L. and a fully radiogenic model is excluded at 5.2σ assuming a homogeneous heat producing element distribution in the mantle.
</summary>
<dc:date>2022-08-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Unexpected Repartitioning of Stratospheric Inorganic Chlorine After the 2020 Australian Wildfires</title>
<link href="https://hdl.handle.net/1721.1/165394" rel="alternate"/>
<author>
<name>Strahan, Susan E</name>
</author>
<author>
<name>Smale, Dan</name>
</author>
<author>
<name>Solomon, Susan</name>
</author>
<author>
<name>Taha, Ghassan</name>
</author>
<author>
<name>Damon, Megan R</name>
</author>
<author>
<name>Steenrod, Stephen D</name>
</author>
<author>
<name>Jones, Nicholas</name>
</author>
<author>
<name>Liley, Ben</name>
</author>
<author>
<name>Querel, Richard</name>
</author>
<author>
<name>Robinson, John</name>
</author>
<id>https://hdl.handle.net/1721.1/165394</id>
<updated>2026-04-10T03:07:37Z</updated>
<published>2022-07-18T00:00:00Z</published>
<summary type="text">Unexpected Repartitioning of Stratospheric Inorganic Chlorine After the 2020 Australian Wildfires
Strahan, Susan E; Smale, Dan; Solomon, Susan; Taha, Ghassan; Damon, Megan R; Steenrod, Stephen D; Jones, Nicholas; Liley, Ben; Querel, Richard; Robinson, John
The inorganic chlorine (Cly) and odd nitrogen (NOy) chemical families influence stratospheric O3. In January 2020 Australian wildfires injected record-breaking amounts of smoke into the southern stratosphere. Within 1–2 months ground-based and satellite observations showed Cly and NOy were repartitioned. By May, lower stratospheric HCl columns declined by ∼30% and ClONO2 columns increased by 40%–50%. The Cly perturbations began and ended near the equinoxes, increased poleward, and peaked at the winter solstice. NO2 decreased from February to April, consistent with sulfate aerosol reactions, but returned to typical values by June - months before the Cly recovery. Transport tracers show that dynamics not chemistry explains most of the observed O3 decrease after April, with no significant transport earlier. Simulations assuming wildfire smoke behaves identically to sulfate aerosols couldn't reproduce observed Cly changes, suggesting they have different composition and chemistry. This undermines our ability to predict ozone in a changing climate.
</summary>
<dc:date>2022-07-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Organosulfur Aerosols Likely Carried Sulfur MIF Signatures in the Early Earth’s Atmosphere</title>
<link href="https://hdl.handle.net/1721.1/165393" rel="alternate"/>
<author>
<name>Oduro, Harry</name>
</author>
<author>
<name>Ono, Shuhei</name>
</author>
<author>
<name>Alrasheed, Faisal</name>
</author>
<author>
<name>Eldridge, Daniel L</name>
</author>
<id>https://hdl.handle.net/1721.1/165393</id>
<updated>2026-04-10T03:07:29Z</updated>
<published>2023-10-16T00:00:00Z</published>
<summary type="text">Organosulfur Aerosols Likely Carried Sulfur MIF Signatures in the Early Earth’s Atmosphere
Oduro, Harry; Ono, Shuhei; Alrasheed, Faisal; Eldridge, Daniel L
Signatures of mass-independent fractionation (MIF) of sulfur in Archean sulfide and sulfate minerals are widely thought to record an anoxic early Earth’s atmosphere. While experiments of ultraviolet irradiation of SO2 produce significant sulfur mass-independent fractionation (S-MIF) in reaction products (elemental sulfur and residual sulfur dioxide), they have not been able to reproduce the isotope patterns, in particular Δ36S/Δ33S ratios, observed in the geologic rock record. Studies that focused on organic sulfur gases and hazes in Archean did not report organosulfur aerosol photoproducts as major contributors to Archean S-MIF chemistry. Here we show, for the first time, that photochemical reactions of SO2 in the presence of gaseous hydrocarbons (CH4, C2H2, and C2H4) produce haze-like organosulfur aerosols bearing S-MIF with variable Δ36S/Δ33S ratios. The isotope trends for the organosulfur photoproducts produced in our experiments suggest that in addition to elemental sulfur, organosulfur compounds—in particular methanesulfonic acid—are a key component of S-MIF signals from the atmosphere to the ocean and sediments with possible links to Archean atmosphere warmed by a methane greenhouse.
</summary>
<dc:date>2023-10-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>High‐Resolution Magnetic‐Geochemical Mapping of the Serpentinized and Carbonated Atlin Ophiolite, British Columbia: Toward Establishing Magnetometry as a Monitoring Tool for In Situ Mineral Carbonation</title>
<link href="https://hdl.handle.net/1721.1/165392" rel="alternate"/>
<author>
<name>Tominaga, Masako</name>
</author>
<author>
<name>Beinlich, Andreas</name>
</author>
<author>
<name>Lima, Eduardo A</name>
</author>
<author>
<name>Pruett, Paiden</name>
</author>
<author>
<name>Vento, Noah R</name>
</author>
<author>
<name>Weiss, Benjamin P</name>
</author>
<id>https://hdl.handle.net/1721.1/165392</id>
<updated>2026-04-10T03:07:39Z</updated>
<published>2023-04-10T00:00:00Z</published>
<summary type="text">High‐Resolution Magnetic‐Geochemical Mapping of the Serpentinized and Carbonated Atlin Ophiolite, British Columbia: Toward Establishing Magnetometry as a Monitoring Tool for In Situ Mineral Carbonation
Tominaga, Masako; Beinlich, Andreas; Lima, Eduardo A; Pruett, Paiden; Vento, Noah R; Weiss, Benjamin P
We address in situ serpentinization and mineral carbonation processes in oceanic lithosphere using integrated field magnetic measurements, rock magnetic analyses, superconducting quantum interference device (SQUID) microscopy, microtextural observations, and energy dispersive spectroscopy phase mapping. A representative suite of ultramafic rock samples were collected, within the Atlin ophiolite, along a 100‐m long transect across a continuous outcrop of mantle harzburgite with several alteration fronts: serpentinite, soapstone (magnesite + talc), and listvenite (magnesite + quartz). Strong correlations between changes in magnetic signal strengths and amount of alteration are shown with distinctive contrasts between serpentinite, transitional soapstone, and listvenite that are linked to the formation and breakdown of magnetite. While previous observations of the Linnajavri ultramafic complex indicated that the breakdown of magnetite occurred during listvenite formation from the precursor soapstone (Tominaga et al., 2017, &lt;jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="https://doi.org/10.1038/s41467-017-01610-4"&gt;https://doi.org/10.1038/s41467-017-01610-4&lt;/jats:ext-link&gt;), results from our study suggest that magnetite destabilization already occurred during the replacement of serpentinite by soapstone (i.e., at lower fluid CO&lt;jats:sub&gt;2&lt;/jats:sub&gt; concentrations). This difference is attributed to fracture‐controlled flow of sulfur‐bearing alteration fluid at Atlin, causing reductive magnetite dissolution in thin soapstone zones separating serpentinite from sulfide‐mineralized listvenite. We argue that magnetite growth or breakdown in soapstone provides insight into the mode of fluid flow and the composition, which control the scale and extent of carbonation. This conclusion enables us to use magnetometry as a viable tool for monitoring the reaction progress from serpentinite to carbonate‐bearing assemblages in space and time with a caution that the three‐dimensionality of magnetic sources impacts the scalability of measurements.
</summary>
<dc:date>2023-04-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Estimating the Net Magnetic Moment of Geological Samples From Planar Field Maps Using Multipoles</title>
<link href="https://hdl.handle.net/1721.1/165391" rel="alternate"/>
<author>
<name>Lima, Eduardo A</name>
</author>
<author>
<name>Weiss, Benjamin P</name>
</author>
<author>
<name>Borlina, Caue S</name>
</author>
<author>
<name>Baratchart, Laurent</name>
</author>
<author>
<name>Hardin, Douglas P</name>
</author>
<id>https://hdl.handle.net/1721.1/165391</id>
<updated>2026-04-10T03:07:27Z</updated>
<published>2023-07-26T00:00:00Z</published>
<summary type="text">Estimating the Net Magnetic Moment of Geological Samples From Planar Field Maps Using Multipoles
Lima, Eduardo A; Weiss, Benjamin P; Borlina, Caue S; Baratchart, Laurent; Hardin, Douglas P
Recent advances in magnetic microscopy have enabled studies of geological samples whose weak and spatially nonuniform magnetizations were previously inaccessible to standard magnetometry techniques. A quantity of central importance is the net magnetic moment, which reflects the mean direction and the intensity of the magnetization states of numerous ferromagnetic crystals within a certain volume. The planar arrangement of typical magnetic microscopy measurements, which originates from measuring the field immediately above the polished surface of a sample to maximize sensitivity and spatial resolution, makes estimating net moments considerably more challenging than with spherically distributed data. In particular, spatially extended and nonuniform magnetization distributions often cannot be adequately approximated by a single magnetic dipole. To address this limitation, we developed a multipole fitting technique that can accurately estimate net moment using spherical harmonic multipole expansions computed from planar data. Given that the optimal location for the origin of such expansions is unknown beforehand and generally unconstrained, regularization of this inverse problem is critical for obtaining accurate moment estimates from noisy experimental magnetic data. We characterized the performance of the technique using synthetic sources under different conditions (noiseless data, data corrupted with simulated white noise, and data corrupted with measured instrument noise). We then validated and demonstrated the technique using superconducting quantum interference device microscopy measurements of impact melt spherules from Lonar crater, India and dusty olivine chondrules from the CO chondrite meteorite Dominion Range 08006.
</summary>
<dc:date>2023-07-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>A &gt;200 ka U-Th Based Chronology From Lacustrine Evaporites, Searles Lake, CA</title>
<link href="https://hdl.handle.net/1721.1/165390" rel="alternate"/>
<author>
<name>Stroup, Justin S</name>
</author>
<author>
<name>Olson, Kristian J</name>
</author>
<author>
<name>Lowenstein, Tim K</name>
</author>
<author>
<name>Jost, Adam B</name>
</author>
<author>
<name>Mosher, Hayley M</name>
</author>
<author>
<name>Peaple, Mark D</name>
</author>
<author>
<name>Feakins, Sarah J</name>
</author>
<author>
<name>Chen, Christine Y</name>
</author>
<author>
<name>Lund, Steven P</name>
</author>
<author>
<name>McGee, David</name>
</author>
<id>https://hdl.handle.net/1721.1/165390</id>
<updated>2026-04-10T03:07:15Z</updated>
<published>2023-03-01T00:00:00Z</published>
<summary type="text">A &gt;200 ka U-Th Based Chronology From Lacustrine Evaporites, Searles Lake, CA
Stroup, Justin S; Olson, Kristian J; Lowenstein, Tim K; Jost, Adam B; Mosher, Hayley M; Peaple, Mark D; Feakins, Sarah J; Chen, Christine Y; Lund, Steven P; McGee, David
Well‐dated lacustrine records are essential to establish the timing and drivers of regional hydroclimate change. Searles Basin, California, records the depositional history of a fluctuating saline‐alkaline lake in the terminal basin of the Owens River system draining the eastern Sierra Nevada. Here, we establish a U‐Th chronology for the ∼76‐m‐long SLAPP‐SLRS17 core collected in 2017 based on dating of evaporite minerals. Ninety‐eight dated samples comprising nine different minerals were evaluated based on stratigraphic, mineralogic, textural, chemical, and reproducibility criteria. After the application of these criteria, a total of 37 dated samples remained as constraints for the age model. A lack of dateable minerals between 145 and 110 ka left the age model unconstrained over the penultimate glacial termination (Termination II). We thus established a tie point between plant wax δD values in the core and a nearby speleothem δ&lt;jats:sup&gt;18&lt;/jats:sup&gt;O record at the beginning of the Last Interglacial. We construct a Bayesian age model allowing stratigraphy to inform sedimentation rate inflections. We find that the &amp;gt;210 ka SLAPP‐SRLS17 record contains five major units that correspond with prior work. The new dating is broadly consistent with previous efforts but provides more precise age estimates and enables a detailed evaluation of evaporite depositional history. We also offer a substantial revision of the age of the Bottom Mud‐Mixed Layer contact, shifting it from ∼130 ka to 178 ± 3 ka. The new U‐Th chronology documents the timing of mud and salt layers and lays the foundation for climate reconstructions.
</summary>
<dc:date>2023-03-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The spinorial energy for asymptotically Euclidean Ricci flow</title>
<link href="https://hdl.handle.net/1721.1/165389" rel="alternate"/>
<author>
<name>Baldauf, Julius</name>
</author>
<author>
<name>Ozuch, Tristan</name>
</author>
<id>https://hdl.handle.net/1721.1/165389</id>
<updated>2026-05-02T03:11:54Z</updated>
<published>2023-04-18T00:00:00Z</published>
<summary type="text">The spinorial energy for asymptotically Euclidean Ricci flow
Baldauf, Julius; Ozuch, Tristan
This article introduces a functional generalizing Perelman’s weighted Hilbert-Einstein action and the Dirichlet energy for spinors. It is well defined on a wide class of noncompact manifolds; on asymptotically Euclidean manifolds, the functional is shown to admit a unique critical point, which is necessarily of min-max type, and the Ricci flow is its gradient flow. The proof is based on variational formulas for weighted spinorial functionals, valid on all spin manifolds with boundary.
</summary>
<dc:date>2023-04-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Emergent symmetries and phases in quantum spin chains coupled to a Kuramoto model</title>
<link href="https://hdl.handle.net/1721.1/165388" rel="alternate"/>
<author>
<name>Bastidas, V. M.</name>
</author>
<id>https://hdl.handle.net/1721.1/165388</id>
<updated>2026-04-10T03:07:17Z</updated>
<published>2025-10-08T00:00:00Z</published>
<summary type="text">Emergent symmetries and phases in quantum spin chains coupled to a Kuramoto model
Bastidas, V. M.
Floquet theory is a widely used framework to describe the dynamics of periodically driven quantum systems. The usual scenario to describe such systems is to consider the effect of an external control with a definite period in time that can act either locally or globally on the system of interest. However, apart from periodicity, such drives typically lack classical correlations or additional structure. In this work, we consider drives with intrinsic dynamics that undergo self-organization, leading to periodic steady states with emergent symmetries. To substantiate our results, we consider two examples of one-dimensional quantum spin chains coupled to a classical Kuramoto model. First, we investigate a Kuramoto model with all-to-all coupling driving a one-dimensional quantum Ising chain into a time-periodic steady state with an emergent translational symmetry. Next, we consider a Kuramoto model in a zigzag lattice driving an XX spin chain. The dynamics of traveling waves in the Kuramoto model trimerizes the lattice, effectively inducing topological behavior that can be exploited to perform topological pumping. Our results can be experimentally implemented in digital and analog near-term quantum devices.
</summary>
<dc:date>2025-10-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Relativistic electrodynamics with a universal length scale</title>
<link href="https://hdl.handle.net/1721.1/165387" rel="alternate"/>
<author>
<name>Pedergnana, Tiemo</name>
</author>
<author>
<name>Kogelbauer, Florian</name>
</author>
<id>https://hdl.handle.net/1721.1/165387</id>
<updated>2026-04-10T03:07:38Z</updated>
<published>2025-08-20T00:00:00Z</published>
<summary type="text">Relativistic electrodynamics with a universal length scale
Pedergnana, Tiemo; Kogelbauer, Florian
We derive the analogues of the Dirac and Pauli equations from a spatially fourth-order Klein-Gordon equation with a universal length scale. Starting from a singularly perturbed variant of Maxwell's equations, we deduce a 32-dimensional variant of the Dirac equation for spin-1/2 particles through an algebraic factorization procedure. We illustrate an experimental test of the theory from the split lines of the electron beam in a Stern-Gerlach experiment. This hyperfine splitting leads to four distinct eigenvalues of the spin operator, which can be grouped into two pairs centered around the classic values of ±ℏ/2. The modified electrodynamic framework features an oriented, micropolar spacetime.
</summary>
<dc:date>2025-08-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Imminent Data Desert: The Future of Stratospheric Monitoring in a Rapidly Changing World</title>
<link href="https://hdl.handle.net/1721.1/165386" rel="alternate"/>
<author>
<name>Salawitch, Ross J</name>
</author>
<author>
<name>Smith, Jessica B</name>
</author>
<author>
<name>Selkirk, Henry</name>
</author>
<author>
<name>Wargan, Krzysztof</name>
</author>
<author>
<name>Chipperfield, Martyn P</name>
</author>
<author>
<name>Hossaini, Ryan</name>
</author>
<author>
<name>Levelt, Pieternel F</name>
</author>
<author>
<name>Livesey, Nathaniel J</name>
</author>
<author>
<name>McBride, Laura A</name>
</author>
<author>
<name>Millán, Luis F</name>
</author>
<author>
<name>Moyer, Elisabeth</name>
</author>
<author>
<name>Santee, Michelle L</name>
</author>
<author>
<name>Schoeberl, Mark R</name>
</author>
<author>
<name>Solomon, Susan</name>
</author>
<author>
<name>Stone, Kane</name>
</author>
<author>
<name>Worden, Helen M</name>
</author>
<id>https://hdl.handle.net/1721.1/165386</id>
<updated>2026-04-10T03:07:34Z</updated>
<published>2025-03-01T00:00:00Z</published>
<summary type="text">The Imminent Data Desert: The Future of Stratospheric Monitoring in a Rapidly Changing World
Salawitch, Ross J; Smith, Jessica B; Selkirk, Henry; Wargan, Krzysztof; Chipperfield, Martyn P; Hossaini, Ryan; Levelt, Pieternel F; Livesey, Nathaniel J; McBride, Laura A; Millán, Luis F; Moyer, Elisabeth; Santee, Michelle L; Schoeberl, Mark R; Solomon, Susan; Stone, Kane; Worden, Helen M
The Atmospheric Chemistry Experiment–Fourier Transform Spectrometer (ACE-FTS) on SCISAT-1 and Microwave Limb Sounder (MLS) on NASA’s Aura satellite have contributed significantly to understanding the impacts of human activities on the stratospheric ozone layer. The two-decade-long data record from these instruments has allowed quantification of ozone depletion caused by human-released ozone-depleting substances, the effects of extreme natural events like major volcanic eruptions including Hunga in 2022, and events amplified by human-caused climate change such as wildfires that inject material into the stratosphere, as happened over Australia in early 2020. The Aura platform is nearing the end of its operational lifetime, and SCISAT-1 is over 20 years old. Their decommissioning will cause a substantial gap in the measurement of critical atmospheric components, including water vapor, inorganic chlorine species, and tracers of stratospheric transport. This upcoming “data desert” poses significant challenges for monitoring the recovery of the ozone layer and assessing the effects on stratospheric composition of future extreme events, threats posed by increases in space debris from satellite burn-up, and the possible injection of stratospheric aerosol to mitigate global warming. The lack of confirmed future missions that can provide daily near-global profile measurements of stratospheric composition highlights the need for observational strategies to bridge this impending gap. This paper discusses the essential role of ACE-FTS and MLS in advancing our understanding of the stratosphere, the impact of data loss after the cessation of one or both instruments, and the urgency of developing strategies for mitigating the impact of these observational losses at a time marked by dramatic changes in the stratosphere due to human and natural factors.&#13;
&#13;
Significance Statement&#13;
We highlight the critical role that data from the ACE-FTS and Microwave Limb Sounder (MLS) satellite instruments have played in advancing our understanding of stratospheric composition and the impacts of human activities on the ozone layer. As these instruments near the end of their operational lifetimes, the imminent loss of data, particularly of stratospheric water vapor, chlorine species, and tracers of transport, portends profound and irrevocable gaps in atmospheric observations. This loss of observational capability will occur at a time of rapid climate change and hinder our understanding of the stratosphere’s response to, and its coupled role in, continued climate forcing. This paper emphasizes the urgency of addressing this data desert, highlighting the need for sustained, coordinated, global measurement capabilities for these crucial constituents.
</summary>
<dc:date>2025-03-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Identifying Climate Patterns Using Clustering Autoencoder Techniques</title>
<link href="https://hdl.handle.net/1721.1/165385" rel="alternate"/>
<author>
<name>Kurihana, Takuya</name>
</author>
<author>
<name>Mastilovic, Ilijana</name>
</author>
<author>
<name>Wang, Lijing</name>
</author>
<author>
<name>Meray, Aurelien</name>
</author>
<author>
<name>Praveen, Satyarth</name>
</author>
<author>
<name>Xu, Zexuan</name>
</author>
<author>
<name>Memarzadeh, Milad</name>
</author>
<author>
<name>Lavin, Alexander</name>
</author>
<author>
<name>Wainwright, Haruko</name>
</author>
<id>https://hdl.handle.net/1721.1/165385</id>
<updated>2026-04-10T03:07:22Z</updated>
<published>2024-07-01T00:00:00Z</published>
<summary type="text">Identifying Climate Patterns Using Clustering Autoencoder Techniques
Kurihana, Takuya; Mastilovic, Ilijana; Wang, Lijing; Meray, Aurelien; Praveen, Satyarth; Xu, Zexuan; Memarzadeh, Milad; Lavin, Alexander; Wainwright, Haruko
The complexity of growing spatiotemporal resolution of climate simulations produces a variety of climate patterns under different projection scenarios. This paper proposes a new data-driven climate classification workflow via an unsupervised deep learning technique that can dimensionally reduce the vast volume of spatiotemporal numerical climate projection data into a compact representation. We aim to identify distinct zones that capture multiple climate variables as well as their future changes under different climate change scenarios. Our approach leverages convolutional autoencoders combined with k-means clustering (standard autoencoder) and online clustering based on the Sinkhorn–Knopp algorithm (clustering autoencoder) across the conterminous United States (CONUS) to capture unique climate patterns in a data-driven fashion from the Geophysical Fluid Dynamics Laboratory Earth System Model with GOLD component (GFDL-ESM2G). The developed approach compresses 70 years of GFDL-ESM2G simulation at 0.125° spatial resolution across the CONUS under multiple warming scenarios to a lower-dimensional space by a factor of 660 000 and then tested on 150 years of GFDL-ESM2G simulation data. The results show that five climate clusters capture physically reasonable and spatially stable climatological patterns matched to known climate classes defined by human experts. Results also show that using a clustering autoencoder can reduce the computational time for clustering by up to 9.2 times when compared to using a standard autoencoder. Our five unique climate patterns resulting from the deep learning–based clustering of the lower-dimensional space thereby enable us to provide insights on hydrometeorology and its spatial heterogeneity across the conterminous United States immediately without downloading large climate datasets.&#13;
&#13;
Significance Statement&#13;
This paper presents a data-driven climate classification approach using unsupervised deep learning to dimensionally reduce climate model outputs and to identify distinct climate regions for their future changes. Our approach compresses climate information for 70 years of Geophysical Fluid Dynamics Laboratory Earth System Model data across the conterminous United States (CONUS) at 0.125° spatial resolution. The results reveal that five climate clusters capture reasonable and stable climatological patterns matched to known climate patterns. The embedded clustering process in deep learning provides ×9.2 times faster execution than the k-means clustering technique. These results give us insight about climate spatial patterns and heterogeneity of hydrological patterns across the conterminous United States without downloading large climate datasets.
</summary>
<dc:date>2024-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Machine Learning Approach for Spatiotemporal Multivariate Optimization of Environmental Monitoring Sensor Locations</title>
<link href="https://hdl.handle.net/1721.1/165384" rel="alternate"/>
<author>
<name>Siddiquee, Masudur R</name>
</author>
<author>
<name>Meray, Aurelien O</name>
</author>
<author>
<name>Xu, Zexuan</name>
</author>
<author>
<name>Gonzalez-Raymat, Hansell</name>
</author>
<author>
<name>Danielson, Thomas</name>
</author>
<author>
<name>Upadhyay, Himanshu</name>
</author>
<author>
<name>Lagos, Leonel E</name>
</author>
<author>
<name>Eddy-Dilek, Carol</name>
</author>
<author>
<name>Wainwright, Haruko M</name>
</author>
<id>https://hdl.handle.net/1721.1/165384</id>
<updated>2026-05-02T03:11:41Z</updated>
<published>2024-10-01T00:00:00Z</published>
<summary type="text">Machine Learning Approach for Spatiotemporal Multivariate Optimization of Environmental Monitoring Sensor Locations
Siddiquee, Masudur R; Meray, Aurelien O; Xu, Zexuan; Gonzalez-Raymat, Hansell; Danielson, Thomas; Upadhyay, Himanshu; Lagos, Leonel E; Eddy-Dilek, Carol; Wainwright, Haruko M
Long-term environmental monitoring is critical for managing the soil and groundwater at contaminated sites. Recent improvements in state-of-the-art sensor technology, communication networks, and artificial intelligence have created opportunities to modernize this monitoring activity for automated, fast, robust, and predictive monitoring. In such modernization, it is required that sensor locations be optimized to capture the spatiotemporal dynamics of all monitoring variables as well as to make it cost-effective. The legacy monitoring datasets of the target area are important to perform this optimization. In this study, we have developed a machine-learning approach to optimize sensor locations for soil and groundwater monitoring based on ensemble supervised learning and majority voting. For spatial optimization, Gaussian process regression (GPR) is used for spatial interpolation, while the majority voting is applied to accommodate the multivariate temporal dimension. Results show that the algorithms significantly outperform the random selection of the sensor locations for predictive spatiotemporal interpolation. While the method has been applied to a four-dimensional dataset (with two-dimensional space, time, and multiple contaminants), we anticipate that it can be generalizable to higher-dimensional datasets for environmental monitoring sensor location optimization.
</summary>
<dc:date>2024-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Subseasonal Prediction of Central European Summer Heatwaves with Linear and Random Forest Machine Learning Models</title>
<link href="https://hdl.handle.net/1721.1/165383" rel="alternate"/>
<author>
<name>Weirich-Benet, Elizabeth</name>
</author>
<author>
<name>Pyrina, Maria</name>
</author>
<author>
<name>Jiménez-Esteve, Bernat</name>
</author>
<author>
<name>Fraenkel, Ernest</name>
</author>
<author>
<name>Cohen, Judah</name>
</author>
<author>
<name>Domeisen, Daniela IV</name>
</author>
<id>https://hdl.handle.net/1721.1/165383</id>
<updated>2026-04-10T03:07:30Z</updated>
<published>2023-04-01T00:00:00Z</published>
<summary type="text">Subseasonal Prediction of Central European Summer Heatwaves with Linear and Random Forest Machine Learning Models
Weirich-Benet, Elizabeth; Pyrina, Maria; Jiménez-Esteve, Bernat; Fraenkel, Ernest; Cohen, Judah; Domeisen, Daniela IV
Heatwaves are extreme near-surface temperature events that can have substantial impacts on ecosystems and society. Early warning systems help to reduce these impacts by helping communities prepare for hazardous climate-related events. However, state-of-the-art prediction systems can often not make accurate forecasts of heatwaves more than two weeks in advance, which are required for advance warnings. We therefore investigate the potential of statistical and machine learning methods to understand and predict central European summer heatwaves on time scales of several weeks. As a first step, we identify the most important regional atmospheric and surface predictors based on previous studies and supported by a correlation analysis: 2-m air temperature, 500-hPa geopotential, precipitation, and soil moisture in central Europe, as well as Mediterranean and North Atlantic sea surface temperatures, and the North Atlantic jet stream. Based on these predictors, we apply machine learning methods to forecast two targets: summer temperature anomalies and the probability of heatwaves for 1–6 weeks lead time at weekly resolution. For each of these two target variables, we use both a linear and a random forest model. The performance of these statistical models decays with lead time, as expected, but outperforms persistence and climatology at all lead times. For lead times longer than two weeks, our machine learning models compete with the ensemble mean of the European Centre for Medium-Range Weather Forecast’s hindcast system. We thus show that machine learning can help improve subseasonal forecasts of summer temperature anomalies and heatwaves.&#13;
&#13;
Significance Statement&#13;
Heatwaves (prolonged extremely warm temperatures) cause thousands of fatalities worldwide each year. These damaging events are becoming even more severe with climate change. This study aims to improve advance predictions of summer heatwaves in central Europe by using statistical and machine learning methods. Machine learning models are shown to compete with conventional physics-based models for forecasting heatwaves more than two weeks in advance. These early warnings can be used to activate effective and timely response plans targeting vulnerable communities and regions, thereby reducing the damage caused by heatwaves.
</summary>
<dc:date>2023-04-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Waveform-based estimation of Q and scattering properties for zero-offset vertical seismic profile data</title>
<link href="https://hdl.handle.net/1721.1/165382" rel="alternate"/>
<author>
<name>Nakata, Rie</name>
</author>
<author>
<name>Lumley, David</name>
</author>
<author>
<name>Hampson, Gary</name>
</author>
<author>
<name>Nihei, Kurt</name>
</author>
<author>
<name>Nakata, Nori</name>
</author>
<id>https://hdl.handle.net/1721.1/165382</id>
<updated>2026-04-10T03:07:24Z</updated>
<published>2020-05-14T00:00:00Z</published>
<summary type="text">Waveform-based estimation of Q and scattering properties for zero-offset vertical seismic profile data
Nakata, Rie; Lumley, David; Hampson, Gary; Nihei, Kurt; Nakata, Nori
Estimating Q using downgoing waves in zero-offset vertical seismic profiles (VSPs) can be challenging when scattered waves from near-borehole heterogeneities interfere with direct arrivals. In any Q estimation method that assumes a downgoing plane wave, constructive and destructive wave-mode interference can cause errors in the estimate. For example, in the spectral-ratio method, such interference modulates the amplitude spectra introducing significant variations and even nonphysical negative Q (amplification) estimates. We have investigated this phenomenon using synthetic and field data sets from offshore Australia and developed a two-step waveform-based method to characterize scattering anomalies and improve Q estimates. Waveform information is key to deal with closely spaced bandlimited seismic events. First, we solve an inverse problem to locate and characterize scatterers by minimizing the traveltime and waveform misfits. Then, using the estimated parameters, we model the scatterers’ contribution to the VSP data and remove it from the observed waveforms. The resulting spectra resemble those that would have been acquired in the absence of the scatterers and are much more suitable for the spectral-ratio method. By assuming a 1D medium and a simple scatterer shape (i.e., circular), we parameterize a scattering heterogeneity using five parameters (depth, distance, size, velocity, and density) and seek a solution using a grid search to handle the nonuniqueness of the VSP inversion. Instead, adaptive subtraction is required to fine-tune the modeled interference to better fit the observation. We successfully use this method to characterize and mitigate the strongest wave interference in the field data. The final Q estimates contain milder variations and much less nonphysical negative Q. Our results demonstrate that the proposed method, readily extendible to multiple scatterer cases, can locate discrete scatterers, remove the effects of their interference, and thus significantly improve the Q estimates from VSP data.
</summary>
<dc:date>2020-05-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reservoir geophysics’ contributions to the energy transition and climate change challenge — Introduction</title>
<link href="https://hdl.handle.net/1721.1/165381" rel="alternate"/>
<author>
<name>He, Zhiliang</name>
</author>
<author>
<name>Mukerji, Tapan</name>
</author>
<author>
<name>Grana, Dario</name>
</author>
<author>
<name>Fu, Liyun</name>
</author>
<author>
<name>Cao, Danping</name>
</author>
<author>
<name>Cai, Xiaohui</name>
</author>
<author>
<name>Qu, Luping</name>
</author>
<author>
<name>Liu, Mingliang</name>
</author>
<author>
<name>Farquharson, Colin G</name>
</author>
<id>https://hdl.handle.net/1721.1/165381</id>
<updated>2026-04-10T03:07:14Z</updated>
<published>2026-03-09T00:00:00Z</published>
<summary type="text">Reservoir geophysics’ contributions to the energy transition and climate change challenge — Introduction
He, Zhiliang; Mukerji, Tapan; Grana, Dario; Fu, Liyun; Cao, Danping; Cai, Xiaohui; Qu, Luping; Liu, Mingliang; Farquharson, Colin G
Achieving net-zero greenhouse gas emissions by 2050 represents one of the key scientific and societal challenges of our time. The energy industry plays a central role in this transition, which requires a rapid shift from conventional fossil fuel-based systems toward renewable energy resources and the large-scale deployment of subsurface solutions such as geological CO₂ sequestration, underground hydrogen storage, and natural hydrogen exploration. These emerging energy systems critically depend on accurate static subsurface characterization and robust dynamic monitoring of complex reservoir environments. In this context, reservoir geophysics provides essential tools for imaging, quantifying, and monitoring subsurface processes across spatial and temporal scales.
</summary>
<dc:date>2026-03-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Revisiting numerical validation of Gassmann’s equations: Open-pore boundary condition</title>
<link href="https://hdl.handle.net/1721.1/165380" rel="alternate"/>
<author>
<name>Alkhimenkov, Yury</name>
</author>
<id>https://hdl.handle.net/1721.1/165380</id>
<updated>2026-04-10T03:07:31Z</updated>
<published>2026-04-01T00:00:00Z</published>
<summary type="text">Revisiting numerical validation of Gassmann’s equations: Open-pore boundary condition
Alkhimenkov, Yury
Gassmann’s equations are widely used to predict the effective moduli of fluid-saturated rocks from dry properties and basic petrophysical parameters, yet pore-scale validations that explicitly demonstrate numerical convergence remain limited. Furthermore, recent publications have questioned the logical consistency of the derivation of Gassmann’s equations, arguing instead for the consistency of the Brown and Korringa (1975) formulation with a “mean” compressibility. A pore-scale validation of Gassmann’s relations was performed under an open-pore boundary geometry, where the pore network intersects the external surface and the imposed macroscopic displacement acts simultaneously on solid and fluid at the boundary. Three-dimensional finite-element simulations were used that couple linear elasticity of the solid skeleton with the quasistatic, compressible Navier–Stokes equations that govern fluid flow. Direct relaxation tests on monomineral, isotropic (cubic) models with generic pore topology (narrow throats linked to a wider pore body) were conducted across a sequence of mesh refinements. In the low-frequency limit, the numerically evaluated undrained bulk modulus converged to the Gassmann prediction to within numerical precision. Comparisons with the Brown and Korringa (1975) formulation indicated that the “mean” compressibility converges to the grain compressibility, causing the formulation to collapse to the classical Gassmann result as resolution increases. Together with earlier closed-pore analysis, the results confirmed that for such models, Gassmann’s equations remain valid for open- and closed-pore boundary conditions, provided that uniform pore pressure is achieved in the quasistatic limit.
</summary>
<dc:date>2026-04-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Full rock anisotropy characterization using laser ultrasonics</title>
<link href="https://hdl.handle.net/1721.1/165379" rel="alternate"/>
<author>
<name>Mandal, Partha Pratim</name>
</author>
<author>
<name>Simpson, Jonathan</name>
</author>
<author>
<name>Sarout, Joel</name>
</author>
<author>
<name>Kovalyshen, Yevhen</name>
</author>
<author>
<name>Adam, Ludmila</name>
</author>
<author>
<name>Wijk, Kasper van</name>
</author>
<id>https://hdl.handle.net/1721.1/165379</id>
<updated>2026-04-10T03:07:25Z</updated>
<published>2026-02-24T00:00:00Z</published>
<summary type="text">Full rock anisotropy characterization using laser ultrasonics
Mandal, Partha Pratim; Simpson, Jonathan; Sarout, Joel; Kovalyshen, Yevhen; Adam, Ludmila; Wijk, Kasper van
Reliable seismic imaging and the estimate of the distribution of subsurface stress depend on the accurate assessment of elastic anisotropy in shaly rock formation. Anisotropy was typically evaluated in the lab with contacting transducers. However, these measurements frequently reported significant uncertainty due to variations in mechanical coupling, limitations on the number of ray paths analyzed, and the relative sizes of transducers. We assessed the effectiveness of the contactless laser ultrasonic pulse transmission technique, which uses a source and probing laser and a cylindrical rock sample placed on a rotating stage, to reduce uncertainties in the estimation of Thomsen’s anisotropy parameters (TAPs). The ambiguity of propagation distance was eliminated from the smaller imprint of the source and receiver lasers on the core sample, suggesting that group velocity was effectively estimated, and the observed wave attenuation was solely indicative of the rock. Three cylindrical samples of multilayer manufactured material, namely, phenolic grade CE (Canvas Electrical), which were rather homogeneous and oriented differently (0, 45°, and 90° with respect to the bedding), were examined for P-wave velocity over approximately 630 separate ray pathways. The most precise estimation of TAPs in a vertical transverse isotropic medium without knowledge of the symmetry axis was achieved by using the laser ultrasonic method on a phenolic grade CE sample that is extracted horizontally to the bedding. Multiple dip angles, dense sampling, and multipath inversion of these datasets reduced Thomsen’s δ parameter uncertainty by 20%. Application of the same technique on an anisotropic and heterogeneous shale sample suggested that (i) the mineralogy-controlled density heterogeneity observed from the 3D X-ray computed tomography images could be detected and identified from high-density laser ultrasonic data using reservoir monitoring techniques imported from field-scale geophysics and (ii) TAPs in the homogeneous and anisotropic sub-volume of the shale sample could be reliably estimated once heterogeneity was accounted for.
</summary>
<dc:date>2026-02-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>MEDiCINe: Motion Correction for Neural Electrophysiology Recordings</title>
<link href="https://hdl.handle.net/1721.1/165378" rel="alternate"/>
<author>
<name>Watters, Nicholas</name>
</author>
<author>
<name>Buccino, Alessio</name>
</author>
<author>
<name>Jazayeri, Mehrdad</name>
</author>
<id>https://hdl.handle.net/1721.1/165378</id>
<updated>2026-04-10T03:07:18Z</updated>
<published>2025-03-01T00:00:00Z</published>
<summary type="text">MEDiCINe: Motion Correction for Neural Electrophysiology Recordings
Watters, Nicholas; Buccino, Alessio; Jazayeri, Mehrdad
Electrophysiology recordings from the brain using laminar multielectrode arrays allow researchers to measure the activity of many neurons simultaneously. However, laminar microelectrode arrays move relative to their surrounding neural tissue for a variety of reasons, such as pulsation, changes in intracranial pressure, and decompression of neural tissue after insertion. Inferring and correcting for this motion stabilizes the recording and is critical to identify and track single neurons across time. Such motion correction is a preprocessing step of standard spike-sorting methods. However, estimating motion robustly and accurately in electrophysiology recordings is challenging due to the stochasticity of the neural data. To tackle this problem, we introduce MEDiCINe (Motion Estimation by Distributional Contrastive Inference for Neurophysiology), a novel motion estimation method. We show that MEDiCINe outperforms existing motion estimation methods on an extensive suite of simulated neurophysiology recordings and leads to more accurate spike sorting. We also show that MEDiCINe accurately estimates the motion in primate and rodent electrophysiology recordings with a variety of motion and stability statistics. We open-source MEDiCINe, usage instructions, examples integrating MEDiCINe with common tools for spike sorting, and data and code for reproducing our results. This open software will enable other researchers to use MEDiCINe to improve spike sorting results and get the most out of their electrophysiology datasets.
</summary>
<dc:date>2025-03-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>pAI/MSc: ML Theory Research with Humans on the Loop</title>
<link href="https://hdl.handle.net/1721.1/165377" rel="alternate"/>
<author>
<name>Abdelmoneum, Mahmoud</name>
</author>
<author>
<name>Beneventano, Pierfrancesco</name>
</author>
<author>
<name>Poggio, Tomaso</name>
</author>
<id>https://hdl.handle.net/1721.1/165377</id>
<updated>2026-04-09T03:00:18Z</updated>
<published>2026-03-25T00:00:00Z</published>
<summary type="text">pAI/MSc: ML Theory Research with Humans on the Loop
Abdelmoneum, Mahmoud; Beneventano, Pierfrancesco; Poggio, Tomaso
We present pAI/MSc3, an open-source, customizable, modular multi-agent system for academic&#13;
research workflows. Our goal is not autonomous scientific ideation, nor fully automated research. It is&#13;
narrower and more practical: to reduce by orders of magnitude the human steering required to turn a&#13;
specified hypothesis into a literature-grounded, mathematically established, experimentally supported,&#13;
submission-oriented manuscript draft. pAI/MSc is built with a current emphasis on machine learning theory&#13;
and adjacent quantitative fields.
</summary>
<dc:date>2026-03-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Size Ranges of Magnetic Domain States in Tetrataenite</title>
<link href="https://hdl.handle.net/1721.1/165376" rel="alternate"/>
<author>
<name>Mansbach, Elias N</name>
</author>
<author>
<name>Shah, Jay</name>
</author>
<author>
<name>Williams, Wyn</name>
</author>
<author>
<name>Maurel, Clara</name>
</author>
<author>
<name>Bryson, James FJ</name>
</author>
<author>
<name>Weiss, Benjamin P</name>
</author>
<id>https://hdl.handle.net/1721.1/165376</id>
<updated>2026-05-08T03:12:24Z</updated>
<published>2022-10-17T00:00:00Z</published>
<summary type="text">Size Ranges of Magnetic Domain States in Tetrataenite
Mansbach, Elias N; Shah, Jay; Williams, Wyn; Maurel, Clara; Bryson, James FJ; Weiss, Benjamin P
Paleomagnetic studies of meteorites provide unique constraints on the evolution of magnetic&#13;
fields in the early solar system. These studies rely on the identification of magnetic minerals that can retain&#13;
stable magnetizations over ≳4.5 billion years (Ga). The ferromagnetic mineral tetrataenite (γ''-Fe0.5Ni0.5)&#13;
is found in iron, stony-iron and chondrite meteorite groups. Nanoscale intergrowths of tetrataenite have&#13;
been shown to carry records of paleomagnetic fields, although the effect of magnetostatic interactions&#13;
on their magnetic remanence acquisition remains to be fully understood. Tetrataenite can also occur as&#13;
isolated, non-interacting, nanoscale grains in many meteorite groups, although the paleomagnetic potential&#13;
of these grains is particularly poorly understood. Here, we aim to improve our understanding of tetrataenite&#13;
magnetization to refine our knowledge of existing paleomagnetic analyses and broaden the spectrum of&#13;
meteorite groups that can be used for future paleomagnetic studies. We present the results of analytical&#13;
calculations and micromagnetic modeling of isolated tetrataenite grains with various geometries. We find&#13;
that tetrataenite forms a stable single domain state at grain lengths between 6 and ∼160 nm dependent on its&#13;
elongation. It also possesses a magnetization resistant to viscous remagnetization over the lifetime of the solar&#13;
system at 293 K. At larger grain sizes, tetrataenite's lowest energy state is a lamellar two-domain state, stable at&#13;
Ga-scale timescales. Unlike many other magnetic minerals, tetrataenite does not form a single-vortex domain&#13;
state due to its large uniaxial anisotropy. Our results show that single domain and two-domain tetrataenite&#13;
grains carry an extremely stable magnetization and therefore are promising for paleomagnetic studies.
</summary>
<dc:date>2022-10-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Coincident Biogenic Nitrite and pH Maxima Arise in the Upper Anoxic Layer in the Eastern Tropical North Pacific</title>
<link href="https://hdl.handle.net/1721.1/165375" rel="alternate"/>
<author>
<name>Cinay, Timur</name>
</author>
<author>
<name>Dumit, Diana</name>
</author>
<author>
<name>Woosley, Ryan J</name>
</author>
<author>
<name>Boles, Elisabeth L</name>
</author>
<author>
<name>Kwiecinski, Jarek V</name>
</author>
<author>
<name>Mullen, Susan</name>
</author>
<author>
<name>Tamasi, Tyler J</name>
</author>
<author>
<name>Wolf, Martin J</name>
</author>
<author>
<name>Kelly, Colette L</name>
</author>
<author>
<name>Travis, Nicole M</name>
</author>
<author>
<name>Casciotti, Karen L</name>
</author>
<author>
<name>Babbin, Andrew R</name>
</author>
<id>https://hdl.handle.net/1721.1/165375</id>
<updated>2026-05-08T03:13:41Z</updated>
<published>2022-12-07T00:00:00Z</published>
<summary type="text">Coincident Biogenic Nitrite and pH Maxima Arise in the Upper Anoxic Layer in the Eastern Tropical North Pacific
Cinay, Timur; Dumit, Diana; Woosley, Ryan J; Boles, Elisabeth L; Kwiecinski, Jarek V; Mullen, Susan; Tamasi, Tyler J; Wolf, Martin J; Kelly, Colette L; Travis, Nicole M; Casciotti, Karen L; Babbin, Andrew R
The Eastern Tropical North Pacific (ETNP), like the other marine oxygen deficient zones&#13;
(ODZs), is characterized by an anoxic water column, nitrite accumulation at the anoxic core, and fixed nitrogen&#13;
loss via nitrite reduction to N2O and N2 gases. Here, we constrain the relative contribution of biogeochemical&#13;
processes to observable features such as the secondary nitrite maximum (SNM) and local pH maximum by&#13;
simultaneous measurement of inorganic nitrogen and carbon species. High-resolution sampling within the top&#13;
1 km of the water column reveals consistent chemical features previously unobserved in the region, including a&#13;
tertiary nitrite maximum. Dissolved inorganic carbon measurements show that pH increases with depth at the&#13;
top of the ODZ, peaking at the potential density of the SNM at σθ = 26.15 ± 0.06 (1 s.d.). We developed a novel&#13;
method to determine the relative contributions of anaerobic ammonium oxidation (anammox), denitrification,&#13;
nitrite oxidation, dissimilatory nitrate reduction to nitrite, and calcium carbonate dissolution to the nitrite&#13;
cycling in the anoxic ODZ core. The calculated relative contributions of each reaction are slightly sensitive&#13;
to the assumed C:N:P ratio and the carbon oxidation state of the organic matter sinking through the ODZ.&#13;
Furthermore, we identify the source of the pH increase at the top of ODZ as the net consumption of protons&#13;
via nitrite reduction to N2 by the denitrification process. The increase in pH due to denitrification impacts the&#13;
buffering effect of calcite and aragonite dissolving in the ETNP.
</summary>
<dc:date>2022-12-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Subdaily Slow Fault Slip Dynamics Captured by Low‐Frequency Earthquakes</title>
<link href="https://hdl.handle.net/1721.1/165374" rel="alternate"/>
<author>
<name>Mouchon, Caroline</name>
</author>
<author>
<name>Frank, William B</name>
</author>
<author>
<name>Radiguet, Mathilde</name>
</author>
<author>
<name>Poli, Piero</name>
</author>
<author>
<name>Cotte, Nathalie</name>
</author>
<id>https://hdl.handle.net/1721.1/165374</id>
<updated>2026-05-08T03:13:14Z</updated>
<published>2023-06-28T00:00:00Z</published>
<summary type="text">Subdaily Slow Fault Slip Dynamics Captured by Low‐Frequency Earthquakes
Mouchon, Caroline; Frank, William B; Radiguet, Mathilde; Poli, Piero; Cotte, Nathalie
Geodetic positioning is the geophysical record of reference for slow slip events, but typical daily solutions limit studies of the evolution of slow slip to its long‐term dynamics. Accompanying seismic low‐frequency earthquakes located precisely in time and space provide an opportunity to image slow slip dynamics at subdaily time scales. Here we show that a high‐resolution time history of low‐frequency earthquake fault slip alone can reproduce the geodetic record of slow slip that we observe to be dominated by subdaily fault slip dynamics. However, a simple linear model cannot accommodate the complex dynamics present throughout the slow slip cycle, and an analysis of different phases of the slow slip cycle shows that the ratio of geodetic to seismic fault slip varies as a function of time. This suggests that the low‐frequency earthquake source region saturates as slow slip grows in moment and area. We propose that rheological heterogeneities at the plate boundary associated with low‐frequency earthquakes do not play a significant role in the slow slip rupture process, thus implying that their activity is incidental to the driving aseismic slip.
</summary>
<dc:date>2023-06-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fast Response of Amazon Rivers to Quaternary Climate Cycles</title>
<link href="https://hdl.handle.net/1721.1/165373" rel="alternate"/>
<author>
<name>Goldberg, Samuel L</name>
</author>
<author>
<name>Schmidt, Morgan J</name>
</author>
<author>
<name>Perron, J Taylor</name>
</author>
<id>https://hdl.handle.net/1721.1/165373</id>
<updated>2026-04-24T03:15:25Z</updated>
<published>2021-11-18T00:00:00Z</published>
<summary type="text">Fast Response of Amazon Rivers to Quaternary Climate Cycles
Goldberg, Samuel L; Schmidt, Morgan J; Perron, J Taylor
Large alluvial rivers transport water and sediment across continents and shape lowland landscapes. Repeated glacial cycles have dominated Earth's recent climate, but it is unclear whether these rivers are sensitive to such rapid changes. The Amazon River system, the largest and highest‐discharge in the world, features extensive young terraces that demonstrate geologically rapid change temporally correlated with changes in runoff from Quaternary climate cycles. To test the plausibility of a causal relationship, we use a simple model to estimate from empirical measurements how quickly a river profile responds to changes in discharge or sediment supply. Applying this model to data from 30 gauging stations along alluvial rivers throughout the Brazilian Amazon, we find that many rivers of the Amazon basin can respond faster than glacially induced changes in runoff or sediment flux. The Amazon basin is unusually responsive compared to other large river systems due to its high discharge and sediment flux, narrow floodplains, and low slopes. As a result, we predict that the Amazon basin has been highly dynamic during Quaternary glacial cycles, with cyclical aggradation and incision of lowland rivers driving repeated habitat and environmental change throughout the region. This dynamic landscape may have contributed to the exceptional biodiversity of the region and patterns of ancient human settlement.
</summary>
<dc:date>2021-11-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Stratosphere‐Troposphere Exchanges of Air Mass and Ozone Concentration in the Last Glacial Maximum</title>
<link href="https://hdl.handle.net/1721.1/165372" rel="alternate"/>
<author>
<name>Wang, Mingcheng</name>
</author>
<author>
<name>Fu, Qiang</name>
</author>
<author>
<name>Solomon, Susan</name>
</author>
<author>
<name>Alexander, Becky</name>
</author>
<author>
<name>White, Rachel H</name>
</author>
<id>https://hdl.handle.net/1721.1/165372</id>
<updated>2026-04-09T03:08:13Z</updated>
<published>2022-05-09T00:00:00Z</published>
<summary type="text">Stratosphere‐Troposphere Exchanges of Air Mass and Ozone Concentration in the Last Glacial Maximum
Wang, Mingcheng; Fu, Qiang; Solomon, Susan; Alexander, Becky; White, Rachel H
Stratosphere‐troposphere exchange (STE) of ozone represents a significant source term in the tropospheric ozone budget and can impact surface ozone concentrations, tropospheric oxidation capacity, and methane lifetime. Using the Whole Atmosphere Community Climate Model 6, changes in the air mass and ozone STEs in the Last Glacial Maximum (LGM) as compared with preindustrial (PI) climate are investigated. We use dynamic isentropic surfaces that are determined by fitting to the tropical tropopauses as the upper boundary of the lowermost stratosphere in a mass budget approach, a method particularly suitable for estimating air mass and ozone STEs across different climates. Relative to the PI, the magnitude of ozone STE in the LGM is decreased by 14%–19%, 18%–24%, 18%–23%, 16%–21%, and 15%–21% over the Northern hemisphere extratropics, Southern hemisphere extratropics, the tropics, the extratropics, and the globe, respectively. The extratropical and global decreases are mainly caused by decreased ozone in the extratropical lower stratosphere associated with a weakening of Brewer‐Dobson circulation, while changes in air mass fluxes play a minor role because the effects of weakening Brewer‐Dobson circulation and increased isentropic density partly cancel each other. Analysis of the modeled tropospheric ozone budget indicates that the ozone STE in the LGM is 28% of the tropospheric ozone production rate, as compared to about 9% in the modern climate (year 2000) and 19% in the PI.&lt;/jats:p&gt;
</summary>
<dc:date>2022-05-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Philipp Strack, 2024 Clark Medalist</title>
<link href="https://hdl.handle.net/1721.1/165371" rel="alternate"/>
<author>
<name>Fudenberg, Drew</name>
</author>
<id>https://hdl.handle.net/1721.1/165371</id>
<updated>2026-05-08T03:13:57Z</updated>
<published>2025-02-01T00:00:00Z</published>
<summary type="text">Philipp Strack, 2024 Clark Medalist
Fudenberg, Drew
The 2024 John Bates Clark Medal of the American Economic Association was awarded to Philipp Strack, Professor of Economics at Yale University, for his pathbreaking contributions to the study of individual decision making, which have introduced new techniques, improved our understanding of important economic phenomena, and helped spark a new wave of research on the economics of information while building bridges between modern economic theory and a wide range of adjacent disciplines. This article summarizes some of Philipp’s papers, and explains how they build on and improve previous work.
</summary>
<dc:date>2025-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Anisotropic Exciton Transport in a Lamellar CsPbBr&lt;sub&gt;3&lt;/sub&gt; Nanocrystal Superlattice</title>
<link href="https://hdl.handle.net/1721.1/165370" rel="alternate"/>
<author>
<name>Sheehan, Thomas J.</name>
</author>
<author>
<name>Sekh, Taras V.</name>
</author>
<author>
<name>Bodnarchuk, Maryna I.</name>
</author>
<author>
<name>Kovalenko, Maksym V.</name>
</author>
<author>
<name>Tisdale, William A.</name>
</author>
<id>https://hdl.handle.net/1721.1/165370</id>
<updated>2026-04-09T03:08:07Z</updated>
<published>2026-03-17T00:00:00Z</published>
<summary type="text">Anisotropic Exciton Transport in a Lamellar CsPbBr&lt;sub&gt;3&lt;/sub&gt; Nanocrystal Superlattice
Sheehan, Thomas J.; Sekh, Taras V.; Bodnarchuk, Maryna I.; Kovalenko, Maksym V.; Tisdale, William A.
Colloidal self-assembly is one strategy for engineering anisotropic properties into&#13;
otherwise isotropic materials. In this work, we demonstrate anisotropic exciton transport in an&#13;
A2B-type superlattice containing columns of 5.3 nm CsPbBr3 nanocubes assembled into a&#13;
hexagonal lattice around 6.5 nm LaF3 nanodisks. Using transient photoluminescence microscopy,&#13;
we determined that diffusivity along the fast axis of the superlattice is more than twice as large as&#13;
the slow axis at T = 5 K, but that anisotropy is greatly suppressed at room temperature. Calculations&#13;
of the diffusivity anisotropy ratio based on Förster theory overestimate the measured values,&#13;
highlighting the limitations of this theory in completely describing exciton transport. Overall, our&#13;
results demonstrate how self-assembly of colloidal nanocrystals can be used to engineer directional&#13;
energy transport, and raise more questions about the microscopic nature of dipole coupling in&#13;
CsPbBr3 NC superlattices.
</summary>
<dc:date>2026-03-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Greedy Algorithm Almost Dominates in Smoothed Contextual Bandits</title>
<link href="https://hdl.handle.net/1721.1/165369" rel="alternate"/>
<author>
<name>Raghavan, Manish</name>
</author>
<author>
<name>Slivkins, Aleksandrs</name>
</author>
<author>
<name>Vaughan, Jennifer Wortman</name>
</author>
<author>
<name>Wu, Zhiwei Steven</name>
</author>
<id>https://hdl.handle.net/1721.1/165369</id>
<updated>2026-04-09T03:08:02Z</updated>
<published>2023-04-30T00:00:00Z</published>
<summary type="text">Greedy Algorithm Almost Dominates in Smoothed Contextual Bandits
Raghavan, Manish; Slivkins, Aleksandrs; Vaughan, Jennifer Wortman; Wu, Zhiwei Steven
Online learning algorithms, widely used to power search and content optimization onthe web, must balance exploration and exploitation, potentially sacrificing the experience of currentusers in order to gain information that will lead to better decisions in the future. While necessary inthe worst case, explicit exploration has a number of disadvantages compared to the greedy algorithmthat always ``exploits"" by choosing an action that currently looks optimal. We determine under whatconditions inherent diversity in the data makes explicit exploration unnecessary. We build on a recentline of work on the smoothed analysis of the greedy algorithm in the linear contextual bandits model.We improve on prior results to show that the greedy algorithm almost matches the best possibleBayesian regret rate of any other algorithm on the same problem instance whenever the diversityconditions hold. The key technical finding is that data collected by the greedy algorithm sufficesto simulate a run of any other algorithm. Further, we prove that under a particular smoothnessassumption, the Bayesian regret of the greedy algorithm is at most \~O(T 1/3) in the worst case, whereT is the time horizon.
</summary>
<dc:date>2023-04-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Spectral Methods from Tensor Networks</title>
<link href="https://hdl.handle.net/1721.1/165368" rel="alternate"/>
<author>
<name>Moitra, Ankur</name>
</author>
<author>
<name>Wein, Alexander S</name>
</author>
<id>https://hdl.handle.net/1721.1/165368</id>
<updated>2026-04-24T03:15:55Z</updated>
<published>2023-04-30T00:00:00Z</published>
<summary type="text">Spectral Methods from Tensor Networks
Moitra, Ankur; Wein, Alexander S
A tensor network is a diagram that specifies a way to “multiply” a collection of tensors together to produce another tensor (or matrix). Many existing algorithms for tensor problems (such as tensor decomposition and tensor PCA), although they are not presented this way, can be viewed as spectral methods on matrices built from simple tensor networks. In this work we leverage the full power of this abstraction to design new algorithms for certain continuous tensor decomposition problems. An important and challenging family of tensor problems comes from orbit recovery, a class of inference problems involving group actions (inspired by applications such as cryo-electron microscopy). Orbit recovery problems over finite groups can often be solved via standard tensor methods. However, for infinite groups, no general algorithms are known. We give a new spectral algorithm based on tensor networks for one such problem: continuous multi-reference alignment over the infinite group SO(2). Our algorithm extends to the more general heterogeneous case.
</summary>
<dc:date>2023-04-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Coupling Techniques for Nonlinear Ensemble Filtering</title>
<link href="https://hdl.handle.net/1721.1/165367" rel="alternate"/>
<author>
<name>Spantini, Alessio</name>
</author>
<author>
<name>Baptista, Ricardo</name>
</author>
<author>
<name>Marzouk, Youssef</name>
</author>
<id>https://hdl.handle.net/1721.1/165367</id>
<updated>2026-05-08T03:13:40Z</updated>
<published>2022-11-01T00:00:00Z</published>
<summary type="text">Coupling Techniques for Nonlinear Ensemble Filtering
Spantini, Alessio; Baptista, Ricardo; Marzouk, Youssef
We consider filtering in high-dimensional non-Gaussian state-space models with intractable transition kernels, nonlinear and possibly chaotic dynamics, and sparse observations in space and time. We propose a novel filtering methodology that harnesses transportation of measures, convex optimization, and ideas from probabilistic graphical models to yield robust ensemble approximations of the filtering distribution in high dimensions. Our approach can be understood as the natural generalization of the ensemble Kalman filter (EnKF) to nonlinear updates, using stochastic or deterministic couplings. The use of nonlinear updates can reduce the intrinsic bias of the EnKF at a marginal increase in computational cost. We avoid any form of importance sampling and introduce non-Gaussian localization approaches for dimension scalability. Our framework achieves state-of-the-art tracking performance on challenging configurations of the Lorenz-96 model in the chaotic regime.
</summary>
<dc:date>2022-11-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Lifting for Simplicity: Concise Descriptions of Convex Sets</title>
<link href="https://hdl.handle.net/1721.1/165366" rel="alternate"/>
<author>
<name>Fawzi, Hamza</name>
</author>
<author>
<name>Gouveia, Joao</name>
</author>
<author>
<name>Parrilo, Pablo A</name>
</author>
<author>
<name>Saunderson, James</name>
</author>
<author>
<name>Thomas, Rekha R</name>
</author>
<id>https://hdl.handle.net/1721.1/165366</id>
<updated>2026-05-08T03:14:21Z</updated>
<published>2022-11-01T00:00:00Z</published>
<summary type="text">Lifting for Simplicity: Concise Descriptions of Convex Sets
Fawzi, Hamza; Gouveia, Joao; Parrilo, Pablo A; Saunderson, James; Thomas, Rekha R
This paper presents a selected tour through the theory and applications of lifts of convex sets. A lift of a convex set is a higher-dimensional convex set that projects onto the original set. Many convex sets have lifts that are dramatically simpler to describe than the original set. Finding such simple lifts has significant algorithmic implications, particularly for optimization problems. We consider both the classical case of polyhedral lifts, described by linear inequalities, as well as that of spectrahedral lifts, defined by linear matrix inequalities, with a focus on recent developments related to spectrahedral lifts. Given a convex set, ideally we would like to either find a (low-complexity) polyhedral or spectrahedral lift or find an obstruction proving that no such lift is possible. To this end, we explain the connection between the existence of lifts of a convex set and certain structured factorizations of its associated slack operator. Based on this characterization, we describe a uniform approach, via sums of squares, to the construction of spectrahedral lifts of convex sets and illustrate the method on several families of examples. Finally, we discuss two flavors of obstruction to the existence of lifts: one related to facial structure, and the other related to algebraic properties of the set in question. Rather than being exhaustive, our aim is to illustrate the richness of the area. We touch on a range of different topics related to the existence of lifts and present many examples of lifts from different areas of mathematics and its applications.
</summary>
<dc:date>2022-11-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cortical Face-Selective Responses Emerge Early in Human Infancy</title>
<link href="https://hdl.handle.net/1721.1/165365" rel="alternate"/>
<author>
<name>Kosakowski, Heather L</name>
</author>
<author>
<name>Cohen, Michael A</name>
</author>
<author>
<name>Herrera, Lyneé</name>
</author>
<author>
<name>Nichoson, Isabel</name>
</author>
<author>
<name>Kanwisher, Nancy</name>
</author>
<author>
<name>Saxe, Rebecca</name>
</author>
<id>https://hdl.handle.net/1721.1/165365</id>
<updated>2026-05-08T03:13:49Z</updated>
<published>2024-07-01T00:00:00Z</published>
<summary type="text">Cortical Face-Selective Responses Emerge Early in Human Infancy
Kosakowski, Heather L; Cohen, Michael A; Herrera, Lyneé; Nichoson, Isabel; Kanwisher, Nancy; Saxe, Rebecca
In human adults, multiple cortical regions respond robustly to faces, including the occipital face area (OFA) and fusiform face area (FFA), implicated in face perception, and the superior temporal sulcus (STS) and medial prefrontal cortex (MPFC), implicated in higher-level social functions. When in development, does face selectivity arise in each of these regions? Here, we combined two awake infant functional magnetic resonance imaging (fMRI) datasets to create a sample size twice the size of previous reports (n = 65 infants; 2.6–9.6 months). Infants watched movies of faces, bodies, objects, and scenes, while fMRI data were collected. Despite variable amounts of data from each infant, individual subject whole-brain activation maps revealed responses to faces compared to nonface visual categories in the approximate location of OFA, FFA, STS, and MPFC. To determine the strength and nature of face selectivity in these regions, we used cross-validated functional region of interest analyses. Across this larger sample size, face responses in OFA, FFA, STS, and MPFC were significantly greater than responses to bodies, objects, and scenes. Even the youngest infants (2–5 months) showed significantly face-selective responses in FFA, STS, and MPFC, but not OFA. These results demonstrate that face selectivity is present in multiple cortical regions within months of birth, providing powerful constraints on theories of cortical development.
</summary>
<dc:date>2024-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Synchronous Measurements of Extracellular Action Potentials and Neurochemical Activity with Carbon Fiber Electrodes in Nonhuman Primates</title>
<link href="https://hdl.handle.net/1721.1/165364" rel="alternate"/>
<author>
<name>Amjad, Usamma</name>
</author>
<author>
<name>Choi, Jiwon</name>
</author>
<author>
<name>Gibson, Daniel J</name>
</author>
<author>
<name>Murray, Raymond</name>
</author>
<author>
<name>Graybiel, Ann M</name>
</author>
<author>
<name>Schwerdt, Helen N</name>
</author>
<id>https://hdl.handle.net/1721.1/165364</id>
<updated>2026-05-08T03:14:02Z</updated>
<published>2024-07-01T00:00:00Z</published>
<summary type="text">Synchronous Measurements of Extracellular Action Potentials and Neurochemical Activity with Carbon Fiber Electrodes in Nonhuman Primates
Amjad, Usamma; Choi, Jiwon; Gibson, Daniel J; Murray, Raymond; Graybiel, Ann M; Schwerdt, Helen N
Measuring the dynamic relationship between neuromodulators, such as dopamine, and neuronal action potentials is imperative to understand how these fundamental modes of neural signaling interact to mediate behavior. We developed methods to measure concurrently dopamine and extracellular action potentials (i.e., spikes) in monkeys. Standard fast-scan cyclic voltammetric (FSCV) electrochemical (EChem) and electrophysiological (EPhys) recording systems are combined and used to collect spike and dopamine signals, respectively, from an array of carbon fiber (CF) sensors implanted in the monkey striatum. FSCV requires the application of small voltages at the implanted sensors to measure redox currents generated from target molecules, such as dopamine. These applied voltages create artifacts at neighboring EPhys measurement sensors which may lead to misclassification of these signals as physiological spikes. Therefore, simple automated temporal interpolation algorithms were designed to remove these artifacts and enable accurate spike extraction. We validated these methods using simulated artifacts and demonstrated an average spike recovery rate of 84.5%. We identified and discriminated cell type-specific units in the monkey striatum that were shown to correlate to specific behavioral task parameters related to reward size and eye movement direction. Synchronously recorded spike and dopamine signals displayed contrasting relations to the task variables, suggesting a complex relationship between these two modes of neural signaling. Future application of our methods will help advance our understanding of the interactions between neuromodulator signaling and neuronal activity, to elucidate more detailed mechanisms of neural circuitry and plasticity mediating behaviors in health and in disease.
</summary>
<dc:date>2024-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Functional genetics reveals modulators of antimicrotubule drug sensitivity</title>
<link href="https://hdl.handle.net/1721.1/165363" rel="alternate"/>
<author>
<name>Su, Kuan-Chung</name>
</author>
<author>
<name>Radul, Elena</name>
</author>
<author>
<name>Maier, Nolan K</name>
</author>
<author>
<name>Tsang, Mary-Jane</name>
</author>
<author>
<name>Goul, Claire</name>
</author>
<author>
<name>Moodie, Brittania</name>
</author>
<author>
<name>Marescal, Océane</name>
</author>
<author>
<name>Keys, Heather R</name>
</author>
<author>
<name>Cheeseman, Iain M</name>
</author>
<id>https://hdl.handle.net/1721.1/165363</id>
<updated>2026-04-24T03:15:56Z</updated>
<published>2025-02-03T00:00:00Z</published>
<summary type="text">Functional genetics reveals modulators of antimicrotubule drug sensitivity
Su, Kuan-Chung; Radul, Elena; Maier, Nolan K; Tsang, Mary-Jane; Goul, Claire; Moodie, Brittania; Marescal, Océane; Keys, Heather R; Cheeseman, Iain M
Microtubules play essential roles in diverse cellular processes and are important pharmacological targets for treating human disease. Here, we sought to identify cellular factors that modulate the sensitivity of cells to antimicrotubule drugs. We conducted a genome-wide CRISPR/Cas9-based functional genetics screen in human cells treated with the microtubule-destabilizing drug nocodazole or the microtubule-stabilizing drug paclitaxel. We further conducted a focused secondary screen to test drug sensitivity for ∼1,400 gene targets across two distinct human cell lines and to additionally test sensitivity to the KIF11 inhibitor, STLC. These screens defined gene targets whose loss enhances or suppresses sensitivity to antimicrotubule drugs. In addition to gene targets whose loss sensitized cells to multiple compounds, we observed cases of differential sensitivity to specific compounds and differing requirements between cell lines. Our downstream molecular analysis further revealed additional roles for established microtubule-associated proteins and identified new players in microtubule function.
</summary>
<dc:date>2025-02-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Chemical transformation of the multibudding yeast, Aureobasidium pullulans</title>
<link href="https://hdl.handle.net/1721.1/165362" rel="alternate"/>
<author>
<name>Wirshing, Alison CE</name>
</author>
<author>
<name>Petrucco, Claudia A</name>
</author>
<author>
<name>Lew, Daniel J</name>
</author>
<id>https://hdl.handle.net/1721.1/165362</id>
<updated>2026-04-24T03:14:36Z</updated>
<published>2024-06-27T00:00:00Z</published>
<summary type="text">Chemical transformation of the multibudding yeast, Aureobasidium pullulans
Wirshing, Alison CE; Petrucco, Claudia A; Lew, Daniel J
Aureobasidium pullulans is a ubiquitous polymorphic black yeast with industrial and agricultural applications. It has recently gained attention amongst cell biologists for its unconventional mode of proliferation in which multinucleate yeast cells make multiple buds within a single cell cycle. Here, we combine a chemical transformation method with genome-targeted homologous recombination to yield ∼60 transformants/μg of DNA in just 3 days. This protocol is simple, inexpensive, and requires no specialized equipment. We also describe vectors with codon-optimized green and red fluorescent proteins for A. pullulans and use these tools to explore novel cell biology. Quantitative imaging of a strain expressing cytosolic and nuclear markers showed that although the nuclear number varies considerably among cells of similar volume, total nuclear volume scales with cell volume over an impressive 70-fold size range. The protocols and tools described here expand the toolkit for A. pullulans biologists and will help researchers address the many other puzzles posed by this polyextremotolerant and morphologically plastic organism.
</summary>
<dc:date>2024-06-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tunable DNMT1 degradation reveals DNMT1/DNMT3B synergy in DNA methylation and genome organization</title>
<link href="https://hdl.handle.net/1721.1/165361" rel="alternate"/>
<author>
<name>Scelfo, Andrea</name>
</author>
<author>
<name>Barra, Viviana</name>
</author>
<author>
<name>Abdennur, Nezar</name>
</author>
<author>
<name>Spracklin, George</name>
</author>
<author>
<name>Busato, Florence</name>
</author>
<author>
<name>Salinas-Luypaert, Catalina</name>
</author>
<author>
<name>Bonaiti, Elena</name>
</author>
<author>
<name>Velasco, Guillaume</name>
</author>
<author>
<name>Bonhomme, Frédéric</name>
</author>
<author>
<name>Chipont, Anna</name>
</author>
<author>
<name>Tijhuis, Andréa E</name>
</author>
<author>
<name>Spierings, Diana CJ</name>
</author>
<author>
<name>Guérin, Coralie</name>
</author>
<author>
<name>Arimondo, Paola</name>
</author>
<author>
<name>Francastel, Claire</name>
</author>
<author>
<name>Foijer, Floris</name>
</author>
<author>
<name>Tost, Jӧrg</name>
</author>
<author>
<name>Mirny, Leonid</name>
</author>
<author>
<name>Fachinetti, Daniele</name>
</author>
<id>https://hdl.handle.net/1721.1/165361</id>
<updated>2026-05-08T03:12:33Z</updated>
<published>2024-02-20T00:00:00Z</published>
<summary type="text">Tunable DNMT1 degradation reveals DNMT1/DNMT3B synergy in DNA methylation and genome organization
Scelfo, Andrea; Barra, Viviana; Abdennur, Nezar; Spracklin, George; Busato, Florence; Salinas-Luypaert, Catalina; Bonaiti, Elena; Velasco, Guillaume; Bonhomme, Frédéric; Chipont, Anna; Tijhuis, Andréa E; Spierings, Diana CJ; Guérin, Coralie; Arimondo, Paola; Francastel, Claire; Foijer, Floris; Tost, Jӧrg; Mirny, Leonid; Fachinetti, Daniele
DNA methylation (DNAme) is a key epigenetic mark that regulates critical biological processes maintaining overall genome stability. Given its pleiotropic function, studies of DNAme dynamics are crucial, but currently available tools to interfere with DNAme have limitations and major cytotoxic side effects. Here, we present cell models that allow inducible and reversible DNAme modulation through DNMT1 depletion. By dynamically assessing whole genome and locus-specific effects of induced passive demethylation through cell divisions, we reveal a cooperative activity between DNMT1 and DNMT3B, but not of DNMT3A, to maintain and control DNAme. We show that gradual loss of DNAme is accompanied by progressive and reversible changes in heterochromatin, compartmentalization, and peripheral localization. DNA methylation loss coincides with a gradual reduction of cell fitness due to G1 arrest, with minor levels of mitotic failure. Altogether, this system allows DNMTs and DNA methylation studies with fine temporal resolution, which may help to reveal the etiologic link between DNAme dysfunction and human disease.
</summary>
<dc:date>2024-02-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Can Development Programs Counter Insurgencies? Evidence from a Field Experiment in Afghanistan</title>
<link href="https://hdl.handle.net/1721.1/165360" rel="alternate"/>
<author>
<name>Beath, Andrew</name>
</author>
<author>
<name>Christia, Fotini</name>
</author>
<author>
<name>Enikolopov, Ruben</name>
</author>
<id>https://hdl.handle.net/1721.1/165360</id>
<updated>2026-04-08T03:07:35Z</updated>
<published>2025-07-01T00:00:00Z</published>
<summary type="text">Can Development Programs Counter Insurgencies? Evidence from a Field Experiment in Afghanistan
Beath, Andrew; Christia, Fotini; Enikolopov, Ruben
We exploit a randomized controlled trial conducted between 2007 and 2011 to identify the effect of Afghanistan's largest local governance and development program on the strength of the insurgency. We find that the program reduced violence, improved economic outcomes, and increased government support in interior regions of the country, but increased violence in villages close to the Pakistani border, where foreign insurgents were more numerous. The results suggest that development programs can be effective in suppressing locally driven insurgencies, but may be counterproductive where insurgents are not reliant on the local population for support. (JEL C93, D74, F35, O15, O17, O18)
</summary>
<dc:date>2025-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wage Stagnation and the Decline of Standardized Pay Rates, 1974–1991</title>
<link href="https://hdl.handle.net/1721.1/165359" rel="alternate"/>
<author>
<name>Massenkoff, Maxim</name>
</author>
<author>
<name>Wilmers, Nathan</name>
</author>
<id>https://hdl.handle.net/1721.1/165359</id>
<updated>2026-04-08T03:07:27Z</updated>
<published>2023-01-01T00:00:00Z</published>
<summary type="text">Wage Stagnation and the Decline of Standardized Pay Rates, 1974–1991
Massenkoff, Maxim; Wilmers, Nathan
Using new establishment-by-occupation microdata, we show that the use of discretionary wage setting significantly expanded in the 1970s and 1980s. Increasingly, wages for blue-collar workers were not standardized by job title or seniority but instead subject to managerial discretion. When establishments abandoned standardized pay rates, wages fell, particularly for the lowest-paid workers in a job and for those in establishments that previously paid above market rates. This shift away from standardized pay rates, in context of a broader decline in worker bargaining power, accelerated the decline in real wages experienced by blue-collar workers in the 1980s. (JEL J31, J33, J52, M52, O33)
</summary>
<dc:date>2023-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multiscale affinity maturation simulations to elicit broadly neutralizing antibodies against HIV</title>
<link href="https://hdl.handle.net/1721.1/165358" rel="alternate"/>
<author>
<name>Conti, Simone</name>
</author>
<author>
<name>Ovchinnikov, Victor</name>
</author>
<author>
<name>Faris, Jonathan G</name>
</author>
<author>
<name>Chakraborty, Arup K</name>
</author>
<author>
<name>Karplus, Martin</name>
</author>
<author>
<name>Sprenger, Kayla G</name>
</author>
<id>https://hdl.handle.net/1721.1/165358</id>
<updated>2026-04-08T03:07:47Z</updated>
<published>2022-04-22T00:00:00Z</published>
<summary type="text">Multiscale affinity maturation simulations to elicit broadly neutralizing antibodies against HIV
Conti, Simone; Ovchinnikov, Victor; Faris, Jonathan G; Chakraborty, Arup K; Karplus, Martin; Sprenger, Kayla G
The design of vaccines against highly mutable pathogens, such as HIV and influenza, requires a detailed understanding of how the adaptive immune system responds to encountering multiple variant antigens (Ags). Here, we describe a multiscale model of B cell receptor (BCR) affinity maturation that employs actual BCR nucleotide sequences and treats BCR/Ag interactions in atomistic detail. We apply the model to simulate the maturation of a broadly neutralizing Ab (bnAb) against HIV. Starting from a germline precursor sequence of the VRC01 anti-HIV Ab, we simulate BCR evolution in response to different vaccination protocols and different Ags, which were previously designed by us. The simulation results provide qualitative guidelines for future vaccine design and reveal unique insights into bnAb evolution against the CD4 binding site of HIV. Our model makes possible direct comparisons of simulated BCR populations with results of deep sequencing data, which will be explored in future applications.
</summary>
<dc:date>2022-04-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>How persistent infection overcomes peripheral tolerance mechanisms to cause T cell–mediated autoimmune disease</title>
<link href="https://hdl.handle.net/1721.1/165357" rel="alternate"/>
<author>
<name>Yin, Rose</name>
</author>
<author>
<name>Melton, Samuel</name>
</author>
<author>
<name>Huseby, Eric S</name>
</author>
<author>
<name>Kardar, Mehran</name>
</author>
<author>
<name>Chakraborty, Arup K</name>
</author>
<id>https://hdl.handle.net/1721.1/165357</id>
<updated>2026-04-08T03:07:39Z</updated>
<published>2024-03-06T00:00:00Z</published>
<summary type="text">How persistent infection overcomes peripheral tolerance mechanisms to cause T cell–mediated autoimmune disease
Yin, Rose; Melton, Samuel; Huseby, Eric S; Kardar, Mehran; Chakraborty, Arup K
T cells help orchestrate immune responses to pathogens, and their aberrant regulation can trigger autoimmunity. Recent studies highlight that a threshold number of T cells (a quorum) must be activated in a tissue to mount a functional immune response. These collective effects allow the T cell repertoire to respond to pathogens while suppressing autoimmunity due to circulating autoreactive T cells. Our computational studies show that increasing numbers of pathogenic peptides targeted by T cells during persistent or severe viral infections increase the probability of activating T cells that are weakly reactive to self-antigens (molecular mimicry). These T cells are easily re-activated by the self-antigens and contribute to exceeding the quorum threshold required to mount autoimmune responses. Rare peptides that activate many T cells are sampled more readily during severe/persistent infections than in acute infections, which amplifies these effects. Experiments in mice to test predictions from these mechanistic insights are suggested.
</summary>
<dc:date>2024-03-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Enantioselective Copper-Catalyzed Synthesis of Hydroxylamines via Hydrofunctionalization of Alkenes using Nitroalkanes</title>
<link href="https://hdl.handle.net/1721.1/165356" rel="alternate"/>
<author>
<name>Law, James A</name>
</author>
<author>
<name>Mai, Binh Khanh</name>
</author>
<author>
<name>Hung, Hsuan-Min</name>
</author>
<author>
<name>Hendon, Tobianna</name>
</author>
<author>
<name>Dong, Yuyang</name>
</author>
<author>
<name>Zhang, Yu</name>
</author>
<author>
<name>Liu, Peng</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<id>https://hdl.handle.net/1721.1/165356</id>
<updated>2026-04-08T03:07:24Z</updated>
<published>2026-03-10T00:00:00Z</published>
<summary type="text">Enantioselective Copper-Catalyzed Synthesis of Hydroxylamines via Hydrofunctionalization of Alkenes using Nitroalkanes
Law, James A; Mai, Binh Khanh; Hung, Hsuan-Min; Hendon, Tobianna; Dong, Yuyang; Zhang, Yu; Liu, Peng; Buchwald, Stephen L
Herein, we report that nitroalkanes are competent electrophiles for the enantioselective copper hydride (CuH)-catalyzed alkene hydrofunctionalization of vinyl(hetero)arenes to generate hydroxylamines in good yields and with high levels of enantioselectivity. Control experiments and density functional theory (DFT) calculations suggest that the nitro group constitutes the active electrophile. The direct addition of the enantioenriched alkyl copper intermediate to the nitro group outcompetes competitive reduction or deprotonation of the nitroalkane. DFT calculations indicate that the addition of the stereoenriched alkyl copper intermediate to nitroalkane electrophiles occurs through a six-membered cyclic transition state featuring dearomatization of the vinyl arene. Overall, this process constitutes a one-step route to access enantioenriched &lt;i&gt;N&lt;/i&gt;-alkylhydroxylamine from vinylarenes and nitroalkanes.
</summary>
<dc:date>2026-03-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Monte Carlo toolkit for designing and validating step-range-filter spectrometer designs</title>
<link href="https://hdl.handle.net/1721.1/165355" rel="alternate"/>
<author>
<name>Johnson, TM</name>
</author>
<author>
<name>Lahmann, B</name>
</author>
<author>
<name>Russell, L</name>
</author>
<author>
<name>Vanderloo, NL</name>
</author>
<author>
<name>Cufari, MJ</name>
</author>
<author>
<name>Reichelt, BL</name>
</author>
<author>
<name>Chang, CW</name>
</author>
<author>
<name>Birkel, A</name>
</author>
<author>
<name>Kabadi, NV</name>
</author>
<author>
<name>Sutcliffe, GD</name>
</author>
<author>
<name>Adrian, PJ</name>
</author>
<author>
<name>Pearcy, JA</name>
</author>
<author>
<name>Kunimune, JH</name>
</author>
<author>
<name>Dannhoff, SG</name>
</author>
<author>
<name>Evans, TE</name>
</author>
<author>
<name>Johnson, M Gatu</name>
</author>
<author>
<name>Séguin, FH</name>
</author>
<author>
<name>Petrasso, RD</name>
</author>
<author>
<name>Li, CK</name>
</author>
<author>
<name>Frenje, JA</name>
</author>
<id>https://hdl.handle.net/1721.1/165355</id>
<updated>2026-04-08T03:07:45Z</updated>
<published>2025-02-04T00:00:00Z</published>
<summary type="text">Monte Carlo toolkit for designing and validating step-range-filter spectrometer designs
Johnson, TM; Lahmann, B; Russell, L; Vanderloo, NL; Cufari, MJ; Reichelt, BL; Chang, CW; Birkel, A; Kabadi, NV; Sutcliffe, GD; Adrian, PJ; Pearcy, JA; Kunimune, JH; Dannhoff, SG; Evans, TE; Johnson, M Gatu; Séguin, FH; Petrasso, RD; Li, CK; Frenje, JA
Here, we present a Monte Carlo toolkit for validating step range filter (SRF) spectrometer designs. Geant4 is used to transport charged particles through the SRF filters to generate synthetic SRF data that include realistic CR-39 effects. Synthetic SRF spectra generated by this method inherently account for instrument response and allow for the quantification of SRF performance before shots. The usefulness of this toolkit is demonstrated through its application to a number of problems. A new broadband SRF for the ∼10 MeV wide 3He3He proton spectrum is validated, and an analysis method for analyzing 3He3He-p SRF data that accounts for instrument response is put forth. In addition, an SRF design for the compact recoil-proton spectrometer (CRS) on the Z-machine is validated. Finally, a new calibration technique for the DD-p SRF is proposed and validated.
</summary>
<dc:date>2025-02-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Accelerating plasma and radiation surface science using transient grating spectroscopy</title>
<link href="https://hdl.handle.net/1721.1/165354" rel="alternate"/>
<author>
<name>Wylie, APC</name>
</author>
<author>
<name>Woller, KB</name>
</author>
<author>
<name>Rae, M</name>
</author>
<author>
<name>Lanzrath, AT</name>
</author>
<author>
<name>Dacus, BR</name>
</author>
<author>
<name>Ferry, SE</name>
</author>
<author>
<name>Short, MP</name>
</author>
<id>https://hdl.handle.net/1721.1/165354</id>
<updated>2026-04-08T03:07:36Z</updated>
<published>2025-02-11T00:00:00Z</published>
<summary type="text">Accelerating plasma and radiation surface science using transient grating spectroscopy
Wylie, APC; Woller, KB; Rae, M; Lanzrath, AT; Dacus, BR; Ferry, SE; Short, MP
A facility for the investigation of in situ radiation-materials and plasma-materials interaction is demonstrated with tungsten, using transient grating spectroscopy as a probe of thermal diffusivity and surface acoustic wave speed. Helium plasma exposure at 645 °C to 1.18 × 1018 cm−2 helium, until the growth of tungsten fuzz, showed an increase in surface acoustic wave speed at the near-surface from 2542 ± 1 m s−1 up to 2565 ± 1 m s−1, followed by a greater drop to 2499 ± 7 m s−1. No observable change in thermal diffusivity was present for plasma exposure alone. A separate 10.26 MeV self-ion-irradiation of tungsten to a dose of 7.92 dpa showed a reduction in both thermal diffusivity from 61.4 ± 1.4 mm2 s−1 to 36.0 ± 0.7 mm2 s−1, following trends seen in existing studies, and surface acoustic wave speed from 2647.8 ± 0.6 m s−1 to 2640.0 ± 0.4 m s−1. Facilities like these are poised to rapidly close critical knowledge gaps regarding the coupled effects of plasma and radiation damage for materials in fusion systems.
</summary>
<dc:date>2025-02-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Enhanced sampling of robust molecular datasets with uncertainty-based collective variables</title>
<link href="https://hdl.handle.net/1721.1/165353" rel="alternate"/>
<author>
<name>Tan, Aik Rui</name>
</author>
<author>
<name>Dietschreit, Johannes CB</name>
</author>
<author>
<name>Gómez-Bombarelli, Rafael</name>
</author>
<id>https://hdl.handle.net/1721.1/165353</id>
<updated>2026-04-08T03:07:30Z</updated>
<published>2025-01-15T00:00:00Z</published>
<summary type="text">Enhanced sampling of robust molecular datasets with uncertainty-based collective variables
Tan, Aik Rui; Dietschreit, Johannes CB; Gómez-Bombarelli, Rafael
Generating a dataset that is representative of the accessible configuration space of a molecular system is crucial for the robustness of machine-learned interatomic potentials. However, the complexity of molecular systems, characterized by intricate potential energy surfaces, with numerous local minima and energy barriers, presents a significant challenge. Traditional methods of data generation, such as random sampling or exhaustive exploration, are either intractable or may not capture rare, but highly informative configurations. In this study, we propose a method that leverages uncertainty as the collective variable (CV) to guide the acquisition of chemically relevant data points, focusing on regions of configuration space where ML model predictions are most uncertain. This approach employs a Gaussian Mixture Model-based uncertainty metric from a single model as the CV for biased molecular dynamics simulations. The effectiveness of our approach in overcoming energy barriers and exploring unseen energy minima, thereby enhancing the dataset in an active learning framework, is demonstrated on alanine dipeptide and bulk silica.
</summary>
<dc:date>2025-01-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Thermal enhancement of defect motion for optimizing periodic poling of x-cut thin-film lithium niobate</title>
<link href="https://hdl.handle.net/1721.1/165352" rel="alternate"/>
<author>
<name>Doshi, Sagar P</name>
</author>
<author>
<name>West, Gavin N</name>
</author>
<author>
<name>Gray, Dodd</name>
</author>
<author>
<name>Ram, Rajeev J</name>
</author>
<id>https://hdl.handle.net/1721.1/165352</id>
<updated>2026-04-08T03:07:25Z</updated>
<published>2024-12-24T00:00:00Z</published>
<summary type="text">Thermal enhancement of defect motion for optimizing periodic poling of x-cut thin-film lithium niobate
Doshi, Sagar P; West, Gavin N; Gray, Dodd; Ram, Rajeev J
Patterning of stable, spatially tailored ferroelectric domains in thin-film lithium niobate enables efficient nonlinear optical interactions through quasi-phase matching. The engineering of domain structure is limited by the uncontrolled distribution of defects, which disrupt domain wall motion. Here, we fabricate quasi-phase matching gratings in thin-film lithium niobate with sub 20 nm of period variation. We demonstrate that annealing processed samples at 350 or 500 °C for 48 h, prior to E-field poling, can dramatically reduce the duty cycle variation. We show that maintaining an elevated temperature of 200 °C during poling enhances defect mobility, which leads to more rectangular inverted domains. Moreover, poling at elevated temperatures also increases inversion depth without sacrificing the periodic domain pattern's accuracy or precision. Elevating the temperature prior to and during poling resulted in near-ideal square wave patterning of ferroelectric domains (50% mean duty cycle, sub 10% domain width variation, and 100% depth inversion). This enables effective quasi-phase matching for second harmonic generation in 5.6 mm-long waveguides fabricated from MgO-doped x-cut thin-film lithium niobate.
</summary>
<dc:date>2024-12-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ultra-fast single-crystal CVD diamonds in the particle time-of-flight (PTOF) detector for low yield burn-history measurements on the NIF (invited)</title>
<link href="https://hdl.handle.net/1721.1/165351" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165351</id>
<updated>2026-04-08T03:07:46Z</updated>
<published>2025-01-06T00:00:00Z</published>
<summary type="text">Ultra-fast single-crystal CVD diamonds in the particle time-of-flight (PTOF) detector for low yield burn-history measurements on the NIF (invited)
The Particle Time of Flight (PTOF) diagnostic is a chemical vapor deposition diamond-based detector and is the only diagnostic for measuring nuclear bang times of low yield (&lt;1013) shots on the National Ignition Facility. Recently, a comprehensive study of detector impulse responses revealed certain detectors with very fast and consistent impulse responses with a rise time of &lt;50 ps, enabling low yield burn history measurements. At the current standoff of 50 cm, this measurement is possible with fast 14 MeV neutrons from deuterium–tritium (DT) fusion plasmas. PTOF-inferred DT burn width numbers compare well with widths inferred from the gamma reaction history diagnostic on midyield (1013–1015) shots, where both systems are capable of making this measurement. These new capabilities could be extended to 2.5 MeV deuterium–deuterium neutrons from D plasmas and to even lower yield by reducing the detector standoff distance to 10 cm; a design for this is also presented.
</summary>
<dc:date>2025-01-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Machine learning driven measurement of high-aspect-ratio nanostructures using Mueller matrix spectroscopic ellipsometry</title>
<link href="https://hdl.handle.net/1721.1/165350" rel="alternate"/>
<author>
<name>Mudide, Shiva</name>
</author>
<author>
<name>Keller, Nick</name>
</author>
<author>
<name>Andrew Antonelli, G</name>
</author>
<author>
<name>Cruz, Geraldina</name>
</author>
<author>
<name>Hart, Julia</name>
</author>
<author>
<name>Bruccoleri, Alexander R</name>
</author>
<author>
<name>Heilmann, Ralf K</name>
</author>
<author>
<name>Schattenburg, Mark L</name>
</author>
<id>https://hdl.handle.net/1721.1/165350</id>
<updated>2026-04-08T03:07:41Z</updated>
<published>2025-01-07T00:00:00Z</published>
<summary type="text">Machine learning driven measurement of high-aspect-ratio nanostructures using Mueller matrix spectroscopic ellipsometry
Mudide, Shiva; Keller, Nick; Andrew Antonelli, G; Cruz, Geraldina; Hart, Julia; Bruccoleri, Alexander R; Heilmann, Ralf K; Schattenburg, Mark L
Accurate fabrication of high-aspect ratio (HAR) structures in applications from semiconductor devices to x-ray observatories is essential for their optimal performance because their performance directly depends on their structure. High-efficiency critical-angle transmission (CAT) gratings enable high-resolution x-ray spectroscopy in astrophysics, but their performance is only ideal when certain performance-critical parameters, like the bar tilts introduced during deep reactive-ion etching, are tuned to precise values. Traditional measurement methods like small-angle x-ray scattering (SAXS) are accurate, but limit the development of robust control algorithms to nudge performance-critical parameters toward favorable values because they are slow and often destructive. We present a fast, accurate, nondestructive measurement method using Mueller matrix spectroscopic ellipsometry and machine learning. Given a HAR structure, we train on rigorous coupled-wave analysis simulation data to predict Mueller matrix spectra from input performance-critical parameter values. We then invert this forward problem by freezing our network weights, measuring experimental Mueller matrix spectra, and vanilla gradient descending on performance-critical parameters to values that correspond to the input Mueller matrix spectra. Introducing machine learning to invert the forward problem reduces computation time, and experimental results demonstrate close agreement between our method’s determined tilt and SAXS measurements. Our accurate, fast measurement method paves the way for the development of robust control algorithms that adjust fabrication parameters in response to measurement, ensuring optimal performance in not only CAT gratings but also HAR structures embedded in applications from semiconductor to microelectromechanical systems fabrication.
</summary>
<dc:date>2025-01-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Self-aligned fabrication of vertical, fin-based structures</title>
<link href="https://hdl.handle.net/1721.1/165349" rel="alternate"/>
<author>
<name>Perozek, Joshua</name>
</author>
<author>
<name>Palacios, Tomás</name>
</author>
<id>https://hdl.handle.net/1721.1/165349</id>
<updated>2026-04-08T03:07:38Z</updated>
<published>2024-12-09T00:00:00Z</published>
<summary type="text">Self-aligned fabrication of vertical, fin-based structures
Perozek, Joshua; Palacios, Tomás
Modern power devices rely on complex, three-dimensional, vertical designs to increase their power density, ease their thermal management, and improve their reliability. However, fabrication techniques have historically relied on 2D processes for patterning lateral features. This work presents a new technology that uses multiple steps of angled depositions to fabricate self-aligned vertical, fin-based devices that avoid fundamental lithography resolution and alignment limitations. The fabrication flows of two devices, the self-aligned vertical finFET and the high-κ dielectric fin diode, are presented to demonstrate how angled depositions can readily achieve transistors with submicrometer, vertical gates in a source-first process and also create high-aspect ratio GaN fins with a record 70:1 aspect ratio.
</summary>
<dc:date>2024-12-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evaluating deuterated-xylene for use as a fusion neutron spectrometer</title>
<link href="https://hdl.handle.net/1721.1/165348" rel="alternate"/>
<author>
<name>Ball, JL</name>
</author>
<author>
<name>Panontin, E</name>
</author>
<author>
<name>Mackie, S</name>
</author>
<author>
<name>Tinguely, RA</name>
</author>
<author>
<name>Raj, P</name>
</author>
<id>https://hdl.handle.net/1721.1/165348</id>
<updated>2026-04-08T03:07:49Z</updated>
<published>2024-12-17T00:00:00Z</published>
<summary type="text">Evaluating deuterated-xylene for use as a fusion neutron spectrometer
Ball, JL; Panontin, E; Mackie, S; Tinguely, RA; Raj, P
The spectrum of neutrons emitted by thermonuclear plasmas encodes information about the fuel ion distribution function. Measuring these fast neutron spectra with sufficient resolution allows for the measurement of plasma properties such as the ion temperature and strength and energy of fast ion populations. Liquid organic scintillators are a commonly used fast neutron detection technology because of their high detection efficiency and ability to discriminate between neutrons and gammas. However, performing detailed spectroscopy with these detectors is difficult because of the isotropic nature of neutron scattering on protons, the dominant mechanism of interaction. Deuterium-based scintillators have shown promise as a superior spectrometer technology because of the anisotropic nature of neutron scattering on deuterium, which significantly improves the condition number of the detector response matrix [Lawrence et al., Nucl. Instrum. Methods Phys. Res., Sect. A 729, 924 (2013)]. Deuterated-xylene, now available commercially, has advantages in light output and safety over benzene-based deuterated scintillators [Becchetti et al., Nucl. Instrum. Methods Phys. Res., Sect. A 820, 112 (2016)]. We present experimental spectrum unfoldings made by 2 in. right cylindrical protiated-xylene and deuterated-xylene detectors with response matrices generated with Geant4 and additional data from the literature. We compare their performance by measuring the neutron spectrum produced by an AmBe source and deuterium–tritium (DT) neutron generators. We find that the deuterated scintillator outperforms the protiated one for AmBe and DT spectra, suggesting deuterated-xylene should be considered for future fusion neutron spectrometry applications.
</summary>
<dc:date>2024-12-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Immersed boundary method for dynamic simulation of polarizable colloids of arbitrary shape in explicit ion electrolytes</title>
<link href="https://hdl.handle.net/1721.1/165347" rel="alternate"/>
<author>
<name>Krucker-Velasquez, Emily</name>
</author>
<author>
<name>Swan, James W</name>
</author>
<author>
<name>Sherman, Zachary</name>
</author>
<id>https://hdl.handle.net/1721.1/165347</id>
<updated>2026-04-08T03:07:34Z</updated>
<published>2024-10-25T00:00:00Z</published>
<summary type="text">Immersed boundary method for dynamic simulation of polarizable colloids of arbitrary shape in explicit ion electrolytes
Krucker-Velasquez, Emily; Swan, James W; Sherman, Zachary
We develop a computational method for modeling electrostatic interactions of arbitrarily shaped, polarizable objects on colloidal length scales, including colloids/nanoparticles, polymers, and surfactants, dispersed in explicit ion electrolytes and nonionic solvents. Our method computes the nonuniform polarization charge distribution induced in a colloidal particle by both externally applied electric fields and local electric fields arising from other charged objects in the dispersion. This leads to expressions for electrostatic energies, forces, and torques that enable efficient molecular dynamics and Brownian dynamics simulations of colloidal dispersions in electrolytes, which can be harnessed to accurately predict structural and transport properties. We describe an implementation in which colloidal particles are modeled as rigid composites of small spherical beads that tessellate the surface of the particle. The electrostatics calculations are accelerated using a spectrally accurate particle-mesh-Ewald technique implemented on a graphics processing unit and regularized such that the electrostatic calculations are well-defined even for overlapping bodies. We illustrate the effectiveness of this approach with a comprehensive set of calculations: the induced dipole moments and forces for individual, paired, and lattice configurations of spherical colloids in an electric field; the induced dipole moment and torque for anisotropic particles subjected to an electric field; the equilibrium ion distribution in the double layer surrounding charged colloids; the dynamics of charged colloids; and the behavior of ions in the double layer of a polarizable colloid under the influence of an electric field.
</summary>
<dc:date>2024-10-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Errors in the field reconstruction using CR-39 proton radiographs with high fluence variation</title>
<link href="https://hdl.handle.net/1721.1/165346" rel="alternate"/>
<author>
<name>Foo, BC</name>
</author>
<author>
<name>Buschmann, BI</name>
</author>
<author>
<name>Cufari, M</name>
</author>
<author>
<name>Dannhoff, SG</name>
</author>
<author>
<name>DeVault, A</name>
</author>
<author>
<name>Evans, TE</name>
</author>
<author>
<name>Johnson, TM</name>
</author>
<author>
<name>Kunimune, JH</name>
</author>
<author>
<name>Lawrence, Y</name>
</author>
<author>
<name>Pearcy, JA</name>
</author>
<author>
<name>Reichelt, BL</name>
</author>
<author>
<name>Russell, L</name>
</author>
<author>
<name>Vanderloo, N</name>
</author>
<author>
<name>Vargas, J</name>
</author>
<author>
<name>Wink, CW</name>
</author>
<author>
<name>Johnson, M Gatu</name>
</author>
<author>
<name>Séguin, FH</name>
</author>
<author>
<name>Petrasso, RD</name>
</author>
<author>
<name>Frenje, JA</name>
</author>
<id>https://hdl.handle.net/1721.1/165346</id>
<updated>2026-04-08T03:07:28Z</updated>
<published>2024-10-31T00:00:00Z</published>
<summary type="text">Errors in the field reconstruction using CR-39 proton radiographs with high fluence variation
Foo, BC; Buschmann, BI; Cufari, M; Dannhoff, SG; DeVault, A; Evans, TE; Johnson, TM; Kunimune, JH; Lawrence, Y; Pearcy, JA; Reichelt, BL; Russell, L; Vanderloo, N; Vargas, J; Wink, CW; Johnson, M Gatu; Séguin, FH; Petrasso, RD; Frenje, JA
CR-39 proton radiography is an experimental charged-particle backlighter platform fielded and used at OMEGA and the NIF to image electric and magnetic fields in a subject plasma. Processing a piece of CR-39 involves etching it in hot NaOH, and the etch time can greatly impact the background-to-signal ratio (BSR) in low-fluence (≲4 × 104 cm−2) regions and detection efficiency in high-fluence regions (≳7 × 105 cm−2). For CR-39 data with high fluence variation, these effects mean that any single etch time will result in ≳15% error in the measured signal in either the high- or low-fluence regions. This study aims to quantify the impact of the etch time on the BSR and efficiency losses and how these affect the field reconstruction. Experiments at the MIT Linear Electrostatic Ion Accelerator provided empirical values of the BSR and efficiency losses as a function of the fluence and etch time for fluences ranging from 3 × 103 to 7 × 105 cm−2. Synthetic radiographs were generated with known fields and modulated based on empirical values of BSR and efficiency losses. The fields were reconstructed using a Monge–Ampère code with the modulated radiographs as input. The results indicate that combining short and long etches allows for more accurate analysis of radiographs with high fluence variation, with the mean squared error of the reconstructed fields decreasing by factors of 1.2–7 compared to the reconstructions using only one etch time.
</summary>
<dc:date>2024-10-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Atomic structure of self-buffered BaZr(S, Se)3 epitaxial thin film interfaces</title>
<link href="https://hdl.handle.net/1721.1/165345" rel="alternate"/>
<author>
<name>Xu, Michael</name>
</author>
<author>
<name>Ye, Kevin</name>
</author>
<author>
<name>Sadeghi, Ida</name>
</author>
<author>
<name>Jaramillo, R</name>
</author>
<author>
<name>LeBeau, James M</name>
</author>
<id>https://hdl.handle.net/1721.1/165345</id>
<updated>2026-04-08T03:07:16Z</updated>
<published>2024-12-16T00:00:00Z</published>
<summary type="text">Atomic structure of self-buffered BaZr(S, Se)3 epitaxial thin film interfaces
Xu, Michael; Ye, Kevin; Sadeghi, Ida; Jaramillo, R; LeBeau, James M
Understanding and controlling the growth of chalcogenide perovskite thin films through interface design is important for tailoring film properties. Here, the film and interface structure of BaZr(S, Se)3 thin films grown on LaAlO3 by molecular beam epitaxy and postgrowth anion exchange is resolved using aberration-corrected scanning transmission electron microscopy. Epitaxial films are achieved from selfassembly of an interface “buffer” layer, which accommodates the large film/substrate lattice mismatch of nearly 40% for the alloy film studied here. The self-assembled buffer layer, occurring for both the as-grown sulfide and post-selenization alloy films, is shown to have rock-salt-like atomic stacking akin to a Ruddlesden–Popper phase. These results provide insights into oxide-chalcogenide heteroepitaxial film growth, illustrating a process that yields relaxed, crystalline, epitaxial chalcogenide perovskite films that support ongoing studies of optoelectronic and device properties.
</summary>
<dc:date>2024-12-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Synthetic measurements of runaway electron synchrotron emission in the SPARC tokamak</title>
<link href="https://hdl.handle.net/1721.1/165344" rel="alternate"/>
<author>
<name>Tinguely, RA</name>
</author>
<author>
<name>Rosenthal, AM</name>
</author>
<author>
<name>Silva Sa, M</name>
</author>
<author>
<name>Jean, M</name>
</author>
<author>
<name>Abramovic, I</name>
</author>
<id>https://hdl.handle.net/1721.1/165344</id>
<updated>2026-04-08T03:07:43Z</updated>
<published>2024-11-05T00:00:00Z</published>
<summary type="text">Synthetic measurements of runaway electron synchrotron emission in the SPARC tokamak
Tinguely, RA; Rosenthal, AM; Silva Sa, M; Jean, M; Abramovic, I
With plasma currents up to 8.7 MA, the SPARC tokamak runs the risk of forming multi-MA beams of relativistic “runaway” electrons (REs), which could damage plasma facing components if unmitigated. The infrared (IR) and visible imaging and visible spectroscopy systems in SPARC are designed with measurements of synchrotron emission from REs in mind. Synchrotron radiation is emitted by REs along their direction of motion, opposite the plasma current. Matched clockwise and counterclockwise wide views are proposed to detect synchrotron and background radiation, allowing observation of RE synchrotron emission in both plasma current configurations. Due to SPARC’s high toroidal magnetic field strength, 12.2 T on axis, the synchrotron light spectrum is expected to peak in the visible-IR wavelength range. The synthetic diagnostic tool, Synchrotron Orbit-Following Toolkit, is used to model synchrotron images and spectra for three scenarios, with appropriate magnetic equilibria for each: REs generated during plasma current ramp-up, steady-state flat-top (although unlikely, but serving as a reference), and disruptions. Required time resolutions, achievable spatial coverage, and appropriate spectral ranges for various RE energies are assessed.
</summary>
<dc:date>2024-11-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantifying the effects of neutron fluence on proton signal retention in CR-39</title>
<link href="https://hdl.handle.net/1721.1/165343" rel="alternate"/>
<author>
<name>Russell, L</name>
</author>
<author>
<name>Johnson, TM</name>
</author>
<author>
<name>Lawrence, Y</name>
</author>
<author>
<name>Reichelt, B</name>
</author>
<author>
<name>Vanderloo, N</name>
</author>
<author>
<name>Cufari, M</name>
</author>
<author>
<name>Buschmann, BI</name>
</author>
<author>
<name>Dannhoff, S</name>
</author>
<author>
<name>DeVault, A</name>
</author>
<author>
<name>Doeg, E</name>
</author>
<author>
<name>Evans, T</name>
</author>
<author>
<name>Foo, BC</name>
</author>
<author>
<name>Frankel, R</name>
</author>
<author>
<name>Kunimune, JH</name>
</author>
<author>
<name>Pearcy, JA</name>
</author>
<author>
<name>Vargas, J</name>
</author>
<author>
<name>Gatu Johnson, M</name>
</author>
<author>
<name>Frenje, J</name>
</author>
<id>https://hdl.handle.net/1721.1/165343</id>
<updated>2026-04-08T03:07:32Z</updated>
<published>2024-10-02T00:00:00Z</published>
<summary type="text">Quantifying the effects of neutron fluence on proton signal retention in CR-39
Russell, L; Johnson, TM; Lawrence, Y; Reichelt, B; Vanderloo, N; Cufari, M; Buschmann, BI; Dannhoff, S; DeVault, A; Doeg, E; Evans, T; Foo, BC; Frankel, R; Kunimune, JH; Pearcy, JA; Vargas, J; Gatu Johnson, M; Frenje, J
This paper reports on investigations on the impact of higher neutron fluences on the detection efficiency of protons with CR-39, a charged particle track detector. CR-39 is widely used as a diagnostic for inertial fusion applications and is an integral component of numerous particle diagnostics at the OMEGA laser facility and National Ignition Facility. As experiments continue to produce higher and higher yields, existing diagnostics are impacted by higher particle fluences than they were originally designed for. This paper presents data from experiments measuring proton signal on pieces of CR-39 with different levels of neutron fluence with two different etch times. The experiments show a decrease in signal recovery with increased neutron fluence, which is exacerbated at longer etch times. At 3 h etch time, data suggest a 17% ± 7% signal loss at 1.3 × 105 neutron-induced tracks per cm2 and a 67% ± 21% loss at 6 h etch time. Careful signal isolation techniques can recover most of the proton tracks even with moderate neutron fluence.
</summary>
<dc:date>2024-10-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hemorheological Considerations in the Development of Microfluidic Blood Oxygenation Devices</title>
<link href="https://hdl.handle.net/1721.1/165342" rel="alternate"/>
<author>
<name>Pincot, André M.</name>
</author>
<id>https://hdl.handle.net/1721.1/165342</id>
<updated>2026-04-07T03:05:43Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Hemorheological Considerations in the Development of Microfluidic Blood Oxygenation Devices
Pincot, André M.
Novel supersaturation oxygenation technology promises a leap forward in the enhancement of ECMO capabilities and deployment of a more efficient, versatile, and portable form of extracorporeal oxygenation technology. The showcased membrane bubble generation supersaturation technique offers superior oxygenation performance to conventional ECMO allowing for reductions in blood flow rate, thus promising to reduce the shear-based thrombosis that limits current oxygenation technology in medium to long-term treatment of severely aff licted patients. The membrane supersaturation concept promises to address that gap in reliable, extended treatment by greatly reducing shear to delay and prevent thrombus formation in the device and associated extracorporeal life support (ECLS) circuit. The bubbles produced by the membrane generator are small in size, sufficient to completely diffuse and fully oxygenate a larger volume of blood when combined with an additional deoxygenated blood flow. Further, the technique’s high oxygen flux will offer new options for reducing size footprint and ruggedization for austere conditions given further investment and development. This will necessitate the creation of custom membrane solutions and further optimization of device channel geometries via simulation using advanced blood models such as the tensorial enhanced structural stress thixotropic-viscoelastic (t-ESSTV) constitutive model developed and discussed in this work. A characteristic feature of human blood rheology is a distinctive stress hysteresis during a ramp up in the shear rate from zero, followed by a ramp back to zero. This is a result of the fact that human blood has a longer characteristic time of shear-induced rouleaux breakdown compared to the shear aggregation of the rouleaux. We demonstrate this telltale phenomenon of human blood rheology using a triangle ramp protocol to control time-dependent changes in the shear rate. The unique hysteresis data are then used along with steady state data to fit parameters of a recently published thixo-elasto-viscoplastic rheological model, the tESSTV model. These best-fit parameter values from the hysteresis ramps are then used to predict step-up/down in shear rate, small amplitude oscillatory shear, uni-directional large amplitude oscillatory shear, and large amplitude oscillatory shear flow. Additionally, correlations between the calculated fitting parameters and physiological data are analyzed to inform the interpretation of model behavior in physical terms. The goodness of fit of the triangle ramp protocol and rheological hysteresis data are then evaluated alongside recently developed techniques to assess thixotropy via computation of hysteresis loop area. The results indicate the efficacy of the t-ESSTV model in potentially predicting the complex characteristics of blood rheology in useful ways for future use in modeling circulating flows under a variety of mechanical and biological loading conditions and predicting understanding rheological effects on resulting pathologies.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Data Driven Discovery of Modular Biological Systems</title>
<link href="https://hdl.handle.net/1721.1/165341" rel="alternate"/>
<author>
<name>Altae-Tran, Han</name>
</author>
<id>https://hdl.handle.net/1721.1/165341</id>
<updated>2026-04-07T03:03:26Z</updated>
<published>2023-09-01T00:00:00Z</published>
<summary type="text">Data Driven Discovery of Modular Biological Systems
Altae-Tran, Han
This dissertation presents a big data-driven approach for biological and biomedical discovery. The topics covered include the evolution and diversity of CRISPR systems, the identification and analysis of hypervariable protein systems, the identification of ancestral systems, and the development of RNA-guided systems for genome editing and therapeutic applications. Additionally, one of the chapters focuses on population-scale longitudinal mapping of COVID-19 symptoms, behavior, and testing, providing valuable insights for public health officials during the early stages of the pandemic. Through the development of novel methodologies and the utilization of big data-driven methods, this dissertation contributes to the expanding landscape of biomedical research.&#13;
&#13;
Chapter II delves into the origins of Cas9 and Cas12, examining the evolutionarily conserved non-coding RNA associated with IscB and the diverse RNA-guided nucleases encoded by IS200/IS605 elements. Through phylogenetic analysis and experimental characterization, we gain insight into the evolutionary history and diversity of IscB systems, and their potential biological functions.&#13;
&#13;
In Chapter III, we explore the diversity and function of Obligate Mobile Element Guided Activity (OMEGA) systems, focusing on TnpB and its relationship with Cas12 systems. We examine the taxonomy, genomic features, and evolution of these systems, as well as their mobility and potential exaptation.&#13;
&#13;
Chapter IV is dedicated to optimizing OMEGA RNA-guided systems for therapeutic applications. We screen natural IscB variants for efficient genome editing and engineer OrufIscB for enhanced activity, demonstrating its potential as a versatile genome interrogation tool.&#13;
&#13;
In Chapter V, we employ deep terascale clustering to discover functionally diverse CRISPR systems. Using a fast locality-sensitive hashing algorithm, we identify rare CRISPR systems, such as DinG-HNH, Type I Cascade components with HNH domains, and the Type VII CRISPR system, which is a precise RNA-guided RNA endonuclease complex containing a β-CASP nuclease.&#13;
&#13;
In Chapter VII, we investigate compact RNA editors, focusing on the discovery and characterization of Cas13bt. We repurpose Cas13bt for base editing and deliver these base editors to human cells using adeno-associated viruses (AAV), demonstrating their potential for therapeutic applications.&#13;
&#13;
Chapter VIII focuses on the identification and analysis of hypervariable protein systems with repeat signatures, seeking to find generalizations of concepts from other repeat systems such as CRISPR and TALENs. A computational pipeline is established to identify hypervariable repeat signatures in proteins, resulting in candidate systems that were characterized in additional detail. Multiple new mechanisms of modularity (two functions that are decoupled via an interchangeable domain or structure, such as repeats) were identified, pointing to a greater landscape of hypervariable protein systems than previously thought. These findings have implications for the understanding of protein architectures and may also provide valuable insights for the design of novel protein-based tools and therapeutics.&#13;
&#13;
Finally, Chapter IX presents one of the early large-scale studies conducted during the COVID pandemic, focusing on population-scale longitudinal mapping of COVID-19 symptoms, behavior, and testing. The study was conducted relatively early during the pandemic and collected data from a large user base of the How We Feel application. The data-driven approach employed various data analysis techniques, such as logistic regression, UMAP, and prediction models, to identify factors associated with testing propensity, symptoms associated with COVID, and behavior of patients after contracting COVID. The findings from this study could have provided valuable insights in the early stages of the pandemic, informing policymakers and public health officials such as the state of Connecticut to make data-driven decisions.&#13;
&#13;
Overall, this dissertation presents methods for and results from applying big data-driven methods to discovery from large biomedical databases. It specifically focuses on the exploration of diverse CRISPR systems, ancestors of CRISPR systems, hypervariable protein systems, and protein engineering for therapeutics and genome editing applications. From examining the evolutionary origins of Cas9 and Cas12 to investigating the diversity of OMEGA systems and optimizing them for therapeutic use, this work deepens our understanding of these complex biological systems. The discovery of rare CRISPR systems and compact RNA editors further broadens the landscape of genetic tools with potential therapeutic applications. Additionally, the identification and analysis of hypervariable protein systems reveal new mechanisms of modularity, with implications for protein architectures and the development of novel protein-based tools. Finally, the large-scale study of COVID-19 symptoms, behavior, and testing during the early stages of the pandemic demonstrates the power of data-driven approaches in informing public health decisions. Collectively, this research contributes significantly to our understanding of complex biological systems and highlights the potential for their application in advancing human health and biotechnology.
</summary>
<dc:date>2023-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Conceptualizing Machine Learning for Dynamic Information Retrieval of Electronic Health Record Notes</title>
<link href="https://hdl.handle.net/1721.1/165340" rel="alternate"/>
<author>
<name>Jiang, Sharon</name>
</author>
<id>https://hdl.handle.net/1721.1/165340</id>
<updated>2026-04-07T03:05:42Z</updated>
<published>2023-06-01T00:00:00Z</published>
<summary type="text">Conceptualizing Machine Learning for Dynamic Information Retrieval of Electronic Health Record Notes
Jiang, Sharon
The large amount of time clinicians spend sifting through patient notes and documenting in electronic health records (EHRs) is a leading cause of clinician burnout. By proactively and dynamically retrieving relevant notes during the documentation process, we can reduce the effort required to find relevant patient history. In this work, we conceptualize the use of EHR audit logs for machine learning as a source of supervision of note relevance in a specific clinical context, at a particular point in time. Our evaluation focuses on the dynamic retrieval in the emergency department, a high acuity setting with unique patterns of information retrieval and note writing. However, our framework is general and can be applied to other clinical settings and with other data modalities (e.g., labs, medications, imaging). We apply our framework to the oncology setting to demonstrate its utility to other clinical workflows. We show that our methods can achieve an AUC of 0.963 in the ED and 0.937 in oncology when predicting which notes will be read in an individual note writing session. We additionally conduct user studies with several clinicians and find that our framework can help clinicians retrieve relevant information more efficiently.
</summary>
<dc:date>2023-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Microneedles for Easier Fish Skin Penetration and Longer &#13;
Attachment</title>
<link href="https://hdl.handle.net/1721.1/165339" rel="alternate"/>
<author>
<name>Raad, Jad</name>
</author>
<id>https://hdl.handle.net/1721.1/165339</id>
<updated>2026-04-07T03:05:52Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Microneedles for Easier Fish Skin Penetration and Longer &#13;
Attachment
Raad, Jad
Aquaculture is the farming of aquatic animals for commercial purposes. This growing industry supplies around 50% of the world’s seafood and has reduced overfishing. However, it has also facilitated the spread of diseases between fish by growing them in close quarters, which results in poor growth and higher mortality levels. Injection vaccination is the most common way to combat this issue, but it is labor-intensive and stress-intensive on the fish. As an alternative to this method, the Marelli lab proposed using impermeable silk microneedle patches to encapsulate the medication and deliver it through diffusion to rainbow trout fry. When a microneedle patch was tested on a 7 g fry, it had difficulty penetrating the skin and only stayed attached for 10 min after injection. Consequently, it caused significant stress to the fish upon &#13;
insertion and fell short of the 4 hrs required for complete payload diffusion into the animal. This work aimed to reduce the force necessary for the needle to pierce fish skin and augment the &#13;
force needed to dislodge it, allowing for easier piercing and longer animal attachment time. Thus, the study intended to decrease the patch’s insertion force and increase its retraction force. The initial needles were cone-shaped and had an angle of 21º. To assess the effects of needle tip angle and overall shape on the forces, the new needles’ tip angle varied between 15º, 20º, and 25º, and a cylindrical base was added to them and varied between 0%, 33%, and 66% of the total needle height. The insertion and retraction forces of microneedle patches were quantified and revealed that sharper needles and needles with cylindrical bases amounting to 66 % of the total &#13;
needle height reduced the insertion force. In contrast, the retraction force was independent of both factors. The 25º 66%, 15º 33%, and 15º 0% needles displayed the lowest insertion forces and were tested on zebrafish to quantify how long they could stay attached. Preliminary tests on the live animals demonstrated that the new needles stayed attached to the fish for up to 8 hrs. This improved upon the initial Marelli lab design, which remained attached for 30 min at most. &#13;
Overall, pursuing live fish testing would allow for selecting the best-performing design and further developing it as a viable alternative to current vaccination methods.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>An Invertebrate-inspired Approach to Design and Manufacturing in Soft Robotics</title>
<link href="https://hdl.handle.net/1721.1/165338" rel="alternate"/>
<author>
<name>Arase, Cathleen</name>
</author>
<id>https://hdl.handle.net/1721.1/165338</id>
<updated>2026-04-07T03:05:54Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">An Invertebrate-inspired Approach to Design and Manufacturing in Soft Robotics
Arase, Cathleen
Soft robotics has many potential applications including deep sea biological sampling, fruit picking, physical therapy, assistive devices, surgery and other grasping tasks; however, within that realm many soft actuators lack the ability to output high force. In order to attempt to overcome this challenge, many soft roboticists are interested in variable stiffness actuators, but soft-rigid hybrid robots may also be helpful in solving this challenge. In fact, many invertebrates are able to undergo large deformations and have the ability to change their stiffness. Many of these invertebrates integrate components such as spicules or ossicles, which are small bones, making the invertebrates essentially a soft-rigid hybrid system. Taking inspiration from these invertebrates, soft rigid hybrid systems can be designed to increase the capabilities of soft actuators. Within the field of soft robotics, there are many practical problems to be overcome in the development of soft-rigid hybrid hybrid machines, including design, manufacturability, and delamination between soft and rigid components. This thesis focuses on work towards addressing these problems. The work explores invertebrates and invertebrate-inspired soft-rigid hybrid robots as a framework for understanding constraints in soft robotic systems. It then proceeds to explore manufacturing techniques for creating cast soft-rigid hybrid robots. Following this, it explores a novel method for decreasing the delamination forces between rigid overmolded components and soft walls of actuators, and finally it concludes with steps towards creating a soft actuator that incorporates those components as well as a comparison to a rigid example using a linkage mechanism for grasping.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of a High-Throughput Cryoprotection Screening Platform for Cell Therapies</title>
<link href="https://hdl.handle.net/1721.1/165337" rel="alternate"/>
<author>
<name>Dey Barsukova, Anita</name>
</author>
<id>https://hdl.handle.net/1721.1/165337</id>
<updated>2026-04-07T03:05:52Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Development of a High-Throughput Cryoprotection Screening Platform for Cell Therapies
Dey Barsukova, Anita
Type 1 Diabetes is a devastating disease in which the immune system attacks insulin-producing beta cells in the pancreas, disrupting the normal blood glucose regulation mechanism and resulting in damage to major organ systems. An emerging therapy for Type 1 includes transplanting stem cell-derived beta cell aggregates into patients, restoring normal regulation of blood glucose and eliminating the need for insulin injections. Reliable cryopreservation methods are required to meet global demand for these aggregates, but current protocols result in low cell viability post thaw and require complex post processing to remove the toxic cryopreservation agent (CPA) formulation before implantation. In this work, a high-throughput screening method is developed to identify a novel non-toxic CPA formulation that would enable the scale-up of this new Type 1 Diabetes treatment. The development and validation of workflow steps are presented, in addition to data from pilot experiments that execute all workflow steps.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Carbon Nanotube Based Biosensors Using Corona Phase Molecular Recognition (CoPhMoRe): Development and Applications</title>
<link href="https://hdl.handle.net/1721.1/165336" rel="alternate"/>
<author>
<name>Jin, Xiaojia</name>
</author>
<id>https://hdl.handle.net/1721.1/165336</id>
<updated>2026-04-07T03:03:30Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Carbon Nanotube Based Biosensors Using Corona Phase Molecular Recognition (CoPhMoRe): Development and Applications
Jin, Xiaojia
Molecular recognition sites that specifically bind a target molecule are essential for clinical research, disease diagnosis, and therapeutic development. To this end, a promising technique developed by the Strano laboratory at MIT is Corona Phase Molecular Recognition (CoPhMoRe), which uses amphiphilic polymers or macromolecules adsorbed onto a nanoparticle surface to generate a synthetic recognition site.  The underlying nanoparticle, which can also function as the sensor transducer, pins the polymer to a specific 3D confirmation using non-covalent interactions, resulting in a binding pocket analogous to the antigen binding domain of a natural antibody. While CoPhMoRe has proven considerable versatile in recognizing small organic molecules such as vitamins, neurotransmitters, pharmaceutical drugs and steroid hormones, the recognition of large molecules such has viral proteins has been less explored.  Macromolecular analytes introduce a much wider set of potential interactions, requiring refined analysis and new insights into mechanisms.  This thesis focuses on (i) constructing CoPhMoRe sites for protein analytes, (ii) exploring new methods and mechanistic understanding to inform CoPhMoRe recognitions and also (iii) translating CoPhMoRe phases to interfaces that can be incorporated into biosensors for specific applications. &#13;
&#13;
Towards Aim (i), this thesis has developed CoPhMoRe sites for protein based disease biomarkers, including interleukin-6, nucleocapsid and spike proteins of SARS-CoV-2, enabling rapid and label-free near-IR fluorescence detection of target analytes with dose dependent responses in complex environments. Towards Aim (ii), this thesis investigates new methods and analyses for CoPhMoRe characterization, such as the expansion of the Molecular Probe Absorption (MPA) technique. This technique measures the accessible surface area of a CoPhMoRe based sensor by using a fluorescent molecule as a probe that quenches upon interacting with the corona phase. Further advances involve instrumentation and mathematical models to analyze the chiroptical properteis of corona phases, facilitating the CoPhMoRe handedness determination at the single molecule level with circularly polarized excitation sources.   Towards Aim (iii), this thesis explores form factor advancements to broaden the utility of CoPhMoRe sensors. It includes profiling cellular immune heterogeneity by integrating the optical nanosensor arrays into microfluidics to interrogate chemical species efflux from individual cells in real-time using Nanosensor Chemical Cytometry (NCC). Furthermore, nanosensors are encapsulated into stable hydrogels for integration into acoustic tags to track hormone levels in marine animals. &#13;
&#13;
Together, the successful development of CoPhMoRe nanosensors opens new pathways for synthetic molecular recognition that enables the detection of biological macromolecules, and holds great promise for life science applications.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design, Synthesis and Applications of Versatile Porous Poly(arylene ether)s</title>
<link href="https://hdl.handle.net/1721.1/165335" rel="alternate"/>
<author>
<name>Wu, Yifan</name>
</author>
<id>https://hdl.handle.net/1721.1/165335</id>
<updated>2026-04-07T03:03:15Z</updated>
<published>2024-02-01T00:00:00Z</published>
<summary type="text">Design, Synthesis and Applications of Versatile Porous Poly(arylene ether)s
Wu, Yifan
This thesis describes the synthesis of various porous poly(arylene ether)s for the applications in heterogeneous catalysis and gas separation. &#13;
&#13;
In Chapter I, we offer an overview of the structure and properties of porous poly(arylene ether)s, and introduce the key challenges in heterogeneous catalysis and gas separation. In &#13;
&#13;
Chapter II, we present the development of a solution-processable microporous organic polymer catalyst that displays high catalytic performance and size-selectivity in the heterogeneous SuzukiMiyaura coupling reaction. The catalyst can be used to create catalytic impellers that simplifies its use and recovery, thereby conforming to green chemistry principles.&#13;
&#13;
In Chapter III, we demonstrate a tunable synthetic platform for the advent of eight representative microporous poly(arylene ether)s with tertiary-amine functional groups. We compare the competition enhancements in sorption affinity for H₂S and CO₂ to those of primary-amine functional membranes and provide explanation for the reason why the slight enhancements do not fully translate to enhanced separation performance.&#13;
&#13;
In Chapter IV, we explore the potential of free volume manipulation in enhancing acid gas separation for microporous polymer membranes. By incorporating labile functional groups onto a microporous poly(arylene ether) and employing thermal treatment with oxygen, we improve the combined acid gas selectivity and increase membrane resistance to plasticization.&#13;
&#13;
In Chapter V, we synthesize a series of ionic poly(arylene ethers), and evaluate their potential applications in propylene/propane separation, proton exchange and heterogenous catalysis. We study the separation performance of carboxylate-functionalized polymer, and the ion exchange capacity and efficiency as solid acid catalyst for sulfonated polymers to demonstrate their promise.
</summary>
<dc:date>2024-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Explaining Allied Military Postures: Extended Deterrence, the U.S. Nuclear Umbrella, and the Search for Security</title>
<link href="https://hdl.handle.net/1721.1/165334" rel="alternate"/>
<author>
<name>Kwon, Jung Jae</name>
</author>
<id>https://hdl.handle.net/1721.1/165334</id>
<updated>2026-04-07T03:03:29Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Explaining Allied Military Postures: Extended Deterrence, the U.S. Nuclear Umbrella, and the Search for Security
Kwon, Jung Jae
How do non-nuclear allies of the United States bolster deterrence even as they rely on the United States and its nuclear umbrella for security? How do they exercise agency in operationalizing the deterrence extended to them by the United States against their nuclear-armed adversaries? Although the existing literature offers valuable insights into the measures the United States employs to signal commitment and enhance the credibility of its security guarantees, it has paid far less attention to the role of allies themselves. This dissertation addresses that gap by introducing allied integration theory, a new framework for understanding allies’ incentives and choices. The theory explains and predicts variation in allies’ peacetime military postures. I first develop a typology of four ideal types, each reflecting allies’ different choices regarding capabilities, doctrine, tolerance for escalation risk, and integration with U.S. forces, including U.S. nuclear forces. I then argue that allies’ decisions are shaped primarily by their threat environment. Specifically, I highlight two key factors: the threat of strikes (conventional, WMD, or nuclear) and the threat of invasion from their adversaries. I then test the theory through two pairs of comparative case studies. The first pair examines Japan and South Korea in the post-Cold War period; the second compares West Germany and Norway, two frontline states of NATO, during the later Cold War (1970s-1980s). This research design allows for examining both within-case and cross-case variation while holding constant many potential confounders within each pair. Drawing on extensive fieldwork, elite interviews, foreign-language sources, U.S. archival materials, and secondary sources, I analyze how each ally made key decisions on their postures and evaluate the performance of allied integration theory. The findings contribute to the broader debates on alliance politics in the nuclear era and the interplay between conventional and nuclear domains. The research also offers practical insights for addressing growing security challenges faced by U.S.-led alliances amid intensifying geopolitical competition with multiple nuclear-armed adversaries.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Applications of Light Reflectance Sensing in the Gastrointestinal Tract with Ingestible Devices for Disease Diagnosis</title>
<link href="https://hdl.handle.net/1721.1/165333" rel="alternate"/>
<author>
<name>Chen, Hao (Jack)</name>
</author>
<id>https://hdl.handle.net/1721.1/165333</id>
<updated>2026-04-07T03:05:46Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Applications of Light Reflectance Sensing in the Gastrointestinal Tract with Ingestible Devices for Disease Diagnosis
Chen, Hao (Jack)
Disease diagnosis in the gastrointestinal tract can be challenging, often requiring difficult endoscopic procedures or expensive imaging techniques. Pill-sized ingestible sensors represent an alternative method for disease diagnosis in the gastrointestinal tract that is minimally-invasive and cost-effective, thus promoting patient adherence and preventative screening of diseases. In this thesis, I investigate the design of ingestible sensors that emit light and measure light reflectance in the gastrointestinal tract for three applications: the detection of gastric mucosal contact, the diagnosis of upper gastrointestinal bleeding, and the diagnosis of small intestinal ischemia. To enable these applications, I develop arrays of LEDs and photodiodes that monitor the changes in reflectivity of the tissue and changes in color of the tissue. The sensor arrays are fabricated and assembled in ingestible form factors and validated in ex vivo and in vivo experiments with swine. The results demonstrate that the sensing of light reflectance enables accurate differentiation of gastric mucosa versus gastric lumen for the detection of mucosal contact, accurate detection of gastric bleeding even in the presence of red drinks or gastric fluid, and accurate detection of small intestinal ischemia even in the presence of bile and chyme. For the application to diagnose small intestinal ischemia, I present initial mechanical and electrical designs of an ingestible capsule system that activates in the small intestines via the dissolution of a pH-sensitive polymer, then performs duty cycling to enable ischemia detection during the entire small intestinal transit time. I aim to continue the development and validation of these ingestible sensors with the vision of providing minimally-invasive devices to enable cost-effective screening and monitoring of gastrointestinal diseases and conditions.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Discovery and characterization of diverse microbial RNA-guided systems</title>
<link href="https://hdl.handle.net/1721.1/165332" rel="alternate"/>
<author>
<name>Kannan, Soumya</name>
</author>
<id>https://hdl.handle.net/1721.1/165332</id>
<updated>2026-04-07T03:03:19Z</updated>
<published>2023-06-01T00:00:00Z</published>
<summary type="text">Discovery and characterization of diverse microbial RNA-guided systems
Kannan, Soumya
Precise modification of nucleic acids is a powerful technique to enable understanding of the relationship between variation in genetic information and biological phenotypes and to treat genetic diseases. Over the past decade, the microbial adaptive immune system CRISPR-Cas has revolutionized genome editing, largely due to ease of target reprogramming. Cas nucleases can be retargeted by changing a short sequence in the associated non-coding RNA, which acts to guide the enzyme or complex to a complementary nucleic acid target. Exploration of the natural diversity of CRISPR-Cas systems has uncovered numerous variants with widely differing protein and domain architectures that exhibit distinct substrate specificities and activities, tying RNA-guided nucleic acid recognition to diverse enzymatic functions. This diversity has fueled the development of CRISPR-Cas systems for additional applications beyond genome editing, such as transcriptome editing, rapid diagnostics and molecular recording tools, and has aided in optimization of existing technologies via identification of systems that naturally exhibit desirable properties.&#13;
&#13;
In this thesis, we explore the evolution and diversity of RNA-guided microbial systems and characterize and engineer them for use in human cells. First, we investigate the origins of Cas9 and Cas12, the most widely used Cas proteins for genome editing. We find that they evolved from compact transposon-encoded nucleases, which we termed OMEGA, that already employed an RNA-guiding mechanism. Next, we develop OMEGA systems as genome editing tools that, due to their small size, are more compatible with therapeutic delivery vectors. We further explore microbial genomes and metagenomes to discover Cas13b-t, a similarly compact RNA-targeting system that we develop as a deliverable RNA editing platform. Finally, we extended the theme of mining sequence databases to comprehensively catalog proteins and domains associated with CRISPR-Cas systems. Through this analysis, we identify and characterize several novel CRISPR-Cas types and subtypes with potential for development as biotechnologies.
</summary>
<dc:date>2023-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Framework for Detection and Observation of Radiation Chemistry Species on an MR-LINAC</title>
<link href="https://hdl.handle.net/1721.1/165331" rel="alternate"/>
<author>
<name>Warner, Noah Stanley</name>
</author>
<id>https://hdl.handle.net/1721.1/165331</id>
<updated>2026-04-07T03:05:38Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">A Framework for Detection and Observation of Radiation Chemistry Species on an MR-LINAC
Warner, Noah Stanley
Radiation therapy, used in over half of cancer treatments, aims to target tumors while preserving healthy tissue. Existing techniques lack the ability to measure tissue damage during therapy, causing potential over- or under-irradiation, leading to severe side effects. Radiation inflicts DNA damage via direct and indirect mechanisms, the extents of each are inconsistent between patients, causing differences in response to radiation. Magnetic resonance-linear accelerators (MR-linacs) are promising to evaluate indirect DNA damage by measuring radiation chemistry species (RCS) produced during irradiation. In this work, MRI methods were developed to observe free radical production, radiation chemistry was modeled for select RCS scavengers and verified experimentally. These methods were then employed to measure MRI signal changes for complex combinations of RCS scavengers and radiosensitizing nanoparticles. Radiation chemistry experimental T1 changes were used to fit the relaxivity of the superoxide free radical and this value was assumed for all subsequent calculations. MRI T1 changes due to free radical production by radiation are presented in solutions consisting of water, 10 mM coumarin, 20 μM mito-TEMPO, 5 mM glutathione, a 20 μM mito-TEMPO and 5 mM glutathione mixture, 10 μM gold nanoparticles and 60 μM phosphate buffered saline. Radiation chemistry simulations completed for water and 10 mM coumarin show good agreement with their respective experimental T1 changes. Largest T1 changes and largest rates of production of superoxide were found in the 20 μM mito-TEMPO and 5 mM glutathione mixture, while smallest T1 changes and smallest rates of production of superoxide were found in the 20 μM mito-TEMPO solution. The main conclusions of this work show that a framework to detect T1 changes due to the production of free radical species during imaging and irradiation on a MR-linac has been developed, with the predominant source of T1 change over time due to free radicals attributed to the production of superoxide.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Understanding Ion Conduction in Polymer-Ceramic Composite Electrolytes for Lithium Ion Batteries</title>
<link href="https://hdl.handle.net/1721.1/165330" rel="alternate"/>
<author>
<name>Sand, Sara Catherine</name>
</author>
<id>https://hdl.handle.net/1721.1/165330</id>
<updated>2026-04-07T03:03:13Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Understanding Ion Conduction in Polymer-Ceramic Composite Electrolytes for Lithium Ion Batteries
Sand, Sara Catherine
In the transition to safer, more energy-dense solid state batteries, polymer-ceramic composite electrolytes may offer a potential route to achieve simultaneously high lithium ion conductivity and enhanced mechanical stability. Despite numerous studies on the polymer-ceramic composite electrolytes, disagreements persist on whether the polymer or the ceramic are the primary conduction pathway and how each phase is impacted by the proximity of the other. This lack of understanding limits the design of effective composite solid electrolytes. Therefore, the goal of this thesis is to establish the role that the polymer plays in the ionic conduction and what changes in this phase to allow for enhanced conduction. I present a collection of well-controlled experiments using model systems and minimizing the parameter space, as well as utilizing advanced characterization techniques. In doing so, we probe the underlying mechanisms of how lithium ion conductivity is affected in polymer-ceramic composites. In particular, the use of positron annihilation spectroscopy has been instrumental in revealing the primary mechanisms that alter lithium ion conductivity in the polymer matrix. First, we present a comprehensive and in-depth review of the literature in Chapter 2. This chapter statistically analyzes the trends in ionic conductivities achieved in the field and present the various arguments for ion conduction pathways and interfacial effects made throughout the last three decades. As a result of this field-wide analysis, we hypothesize that the major component whose ionic conductivity is affected in the composite is the polymer. Thus the following experiments and results focus on how the polymer is altered structurally and/or chemically. Second, in Chapter 3 we present a study utilizing thin polymer films deposited on substrates of varying acidity, as a model system. Comparison of the polymer film conductivities, chemistry and structures allow us to deduce that the modification of polymer structure near a ceramic interface is a major factor, while the ceramic-polymer interface chemistry has a negligible effect on the conductivity. In particular, the crystallinity and free volume of the polymer change appreciably to result in a higher ionic conductivity in thin films as compared to bulk materials. In Chapter 4,  we assess well-controlled composite electrolytes with inert, non-lithium conducting ceramic fillers, and active, lithium conducting ceramic fillers in the polymer, in particular by consistently controlling the particle size and filler volume fraction. We find that the increase in the free volume of the polymer phase plays a crucial role in the conductivity of both types of composites. The addition of active fillers only minorly improves conductivity over inert fillers, solely due to the conduction path introduced by the active ceramic particles. In Chapter 5, we assess composites containing inert nanometer-site particles to those with inert micrometer-size particles. We find that the ionic conductivity improves with nanoparticles but not with the micrometer-size particles, and again we are able to correlate this improvement with the free volume present in the polymer matrix. Lastly, in Chapter 6, we will summarize several experiments that, though less pertinent to the main aims of this thesis, are valuable to the field in understanding the techniques for characterizing these materials.&#13;
&#13;
Through this thesis, we provide a strong argument for the importance of the polymer’s structure in the composite electrolytes, and particularly an increase in the free volume present in the polymer phase. Such analysis of free volume has been limited in the field thus far. Thus, this thesis fills an important knowledge gap that has been limiting the understanding and control of how ceramic fillers increase lithium ion conductivity in polymer-ceramic composite electrolytes.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Magnetization Dynamics in Multi-sublattice Magnetic Materials</title>
<link href="https://hdl.handle.net/1721.1/165329" rel="alternate"/>
<author>
<name>Lee, Byung Hun</name>
</author>
<id>https://hdl.handle.net/1721.1/165329</id>
<updated>2026-04-07T03:03:10Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Magnetization Dynamics in Multi-sublattice Magnetic Materials
Lee, Byung Hun
Magnon spintronics explores the solid-state devices that utilize electric control of spin currents carried by magnons, the quanta of spin waves. The magnon, the dynamic eigen-excitation of magnetically ordered materials, offers promising opportunities for next-generation information processing and communication systems. It can be engineered through various parameters, such as the orientation and magnitude of applied magnetic fields, choice of magnetic material, and sample geometry, enabling versatile engineering of wave-based computing technologies. &#13;
&#13;
Beyond the conventional ferromagnetic magnons, the final goal of this thesis is to obtain a better understanding of antiferromagnetic dynamics, which gains huge attention due to its unique characteristics including ultrafast magnetization dynamics, low damping, and negligible dipole fields. To achieve this, the study focuses on the magnetization dynamics within magnetic materials ranging from ferromagnet, ferrimagnet, and antiferromagnet, using Brillouin Light Scattering (BLS) spectroscopy. Starting from the understanding of ferromagnetic magnetization dynamics, the interface-driven effects on magnon physics are studied in ferromagnetic insulator/metal bilayers. The study reveals previously unidentified interface-driven changes in magnetization dynamics that can be exploited to locally control and modulate magnonic properties in thin-film heterostructures. &#13;
&#13;
As the ferromagnetic film transitions towards antiferromagnetic behavior, notable changes in  BLS spectra are observed, including significant linewidth broadening. These experimental results highlight the crucial role of antiferromagnetic exchange interactions in multi-sublattice magnetic materials' magnon dynamics. Motivated by the observed reduction in magneto-optical (MO) signal for ferrimagnetic thin films, we conducted a comprehensive study on canted antiferromagnet, focusing on thin hematite (&#120572; — Fe₂O₃) film. Through both experimental and theoretical analyses of the MO properties of hematite films, we demonstrate that the canted net magnetic moment induced by the Dzyaloshinskii-Moriya interaction (DMI) generates a significant linear MO effect, while the quadratic MO signal arises from the Néel vector. Attributing to the observation, we further demonstrate that the secondary MO effect from dynamical net magnetic moment induces the significant BLS signal, in both theoretical and experimental manners. Furthermore, we demonstrate the strong correlation between magnetic domain structure and local magnon spectra, which is identified for the first time in thin &#120572; — Fe₂O₃ film. &#13;
&#13;
Our study extends to the direct observation of a non-thermalized magnon state with spin current injection, indicative of a characteristic excitation mechanism with linearly polarized modes in an easy-plane antiferromagnet. The magnon thermalization and relaxation processes are further elucidated between the two linearly polarized modes. The result shows the significant contribution of high k magnons to long-distance spin transport in hematite using non-local electric measurements. Finally, we characterize the magnetic anisotropy within hematite films, distinguishing each contribution to its origin. These findings offer insights into magnetization dynamics and the manipulation of AFM spin textures via optical methods.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Single-cell dissection of mature conventional dendritic cells in the tumor microenvironment in metastatic melanoma</title>
<link href="https://hdl.handle.net/1721.1/165328" rel="alternate"/>
<author>
<name>Wang, Cassia B.</name>
</author>
<id>https://hdl.handle.net/1721.1/165328</id>
<updated>2026-04-07T03:05:40Z</updated>
<published>2024-02-01T00:00:00Z</published>
<summary type="text">Single-cell dissection of mature conventional dendritic cells in the tumor microenvironment in metastatic melanoma
Wang, Cassia B.
Although immunotherapy has revolutionized cancer treatment, the response rate of metastatic melanoma to immune checkpoint inhibitors (ICI) remains at less than 50%. One of the determinants of response might be explained by the underlying molecular mechanisms in the tumor microenvironment (TME), which is the composition of tumor cells and its surrounding environment of other cell types which play various roles in facilitating or inhibiting the progression of cancer. It was in our interest to specifically investigate the immunological factors driving observed clinical outcomes. Using single-cell technologies, mature conventional dendritic cells (mDCs) were identified in a cohort of metastatic melanoma samples and were present at a higher proportion in a subset of ICI anti-PD1-treated patients with better progression free survival (PFS). Elaborating on this finding, we generalized the characterization of mDCs in metastatic melanoma by using methods to determine mDCs’ association with other subtypes found in the TME, reveal the molecular features of mDCs compared to other conventional dendritic cells (cDCs), and find differentiating factors among samples with different mDC proportions. Through computational analysis of single-cell transcriptomes and epigenomes in metastatic melanoma, we aim to uncover critical immunological features and interactions within the TME, with potential for enhancing melanoma outcomes.
</summary>
<dc:date>2024-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Revisiting MHD Generators with HTS Magnets</title>
<link href="https://hdl.handle.net/1721.1/165327" rel="alternate"/>
<author>
<name>Clingerman, Matthew Hikaru</name>
</author>
<id>https://hdl.handle.net/1721.1/165327</id>
<updated>2026-04-07T03:05:49Z</updated>
<published>2023-09-01T00:00:00Z</published>
<summary type="text">Revisiting MHD Generators with HTS Magnets
Clingerman, Matthew Hikaru
Magneto-hydrodynamic (MHD) power generators can convert thermal and kinetic energy to electrical energy without any moving mechanical parts. They have the promise of competing against typical turbo-generators in a power plant. The advent of high temperature superconducting (HTS) magnets can give MHD generators the edge over other generators as the efficiency increases with the magnetic field strength. A robust mathematical model is derived to account for the plasma physics, fluid dynamics, and magneto-hydrodynamics involved with directing and harnessing the flow of an ionized gas. The resulting analytical model is computationally solved and then analyzed. &#13;
&#13;
It is clear that HTS magnets greatly benefit MHD generators. For a coal-fired power plant, the enthalpy ratios between the input and output of the generator surpass 50%. In other words, over half of the thermal energy produced by the power plant is converted to electricity by the MHD generator. The remaining fraction of energy is directed to a bottoming cycle for additional energy conversion. In the end, modest estimates put the overall efficiency of this system over 65%, compared to the current most advanced coal power plants of less than 45% efficiency.
</summary>
<dc:date>2023-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Controlling Protein and Cell Adhesion Through Interfacial Engineering for More Efficient Biomanufacturing</title>
<link href="https://hdl.handle.net/1721.1/165326" rel="alternate"/>
<author>
<name>McCue, Caroline</name>
</author>
<id>https://hdl.handle.net/1721.1/165326</id>
<updated>2026-04-07T03:02:50Z</updated>
<published>2023-06-01T00:00:00Z</published>
<summary type="text">Controlling Protein and Cell Adhesion Through Interfacial Engineering for More Efficient Biomanufacturing
McCue, Caroline
Interfaces between biological and synthetic materials present both challenges and opportunities within biomanufacturing. Protein and cell adhesion to surfaces can be controlled to improve steps in a typical biologic manufacturing process from cell culture to protein separation and purification. Within downstream processes, in protein purification, chromatography columns are used to separate target proteins from the output of a bioreactor. This work explores how crystallization could be used as an alternative purification process, by utilizing functionalized nanoparticles to nucleate protein crystals faster and at lower concentrations. We demonstrate significant improvements in nucleation induction time and nucleation rates using bioconjugate-functionalized nanoparticles. Within upstream processes, in adherent cell culture, cells are typically detached from surfaces using trypsin, an enzyme that can damage sensitive cells, and result in genetic mutations. This work studies how passive surface textures and active coatings can impact cell growth, morphology and adhesion. We show that micropost surfaces can significantly reduce cell-surface adhesion, and how electrically active surfaces can be used to detach cells on demand without the use of trypsin. These interfacial platforms present opportunities to reduce the costs of traditional biomanufacturing processes, reduce damage to cells, and enable new high throughput platforms.
</summary>
<dc:date>2023-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Structural Investigation of Allosteric Regulation in Class III Ribonucleotide Reductases</title>
<link href="https://hdl.handle.net/1721.1/165325" rel="alternate"/>
<author>
<name>Andree, Gisele A.</name>
</author>
<id>https://hdl.handle.net/1721.1/165325</id>
<updated>2026-04-07T03:02:56Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Structural Investigation of Allosteric Regulation in Class III Ribonucleotide Reductases
Andree, Gisele A.
Ribonucleotide reductases (RNRs) are essential enzymes that use radical-based chemistry to catalyze the reduction of ribonucleotides to deoxyribonucleotides. Each RNR class uses a different cofactor to generate a catalytically essential thiyl radical in the active site. Anaerobic (class III) RNRs employ an oxygen-sensitive glycyl radical cofactor installed within the adjacent glycyl radical domain. To maintain intracellular nucleotide pool balance, RNRs are allosterically regulated. For the prototypical class Ia RNR from Escherichia coli, this regulation involves the Nterminus of the catalytic subunit in a region known as the ‘cone domain’. ATP or dATP binding to the cone domain results in an association between it and the radical-generating subunit that either allows or prevents, respectively, radical transfer. Most class III RNRs have a cone domain and are allosterically regulated, but the mechanism of how this regulation proceeds is not well understood. Allosteric activity regulation for such a class III RNR, the class III RNR from Streptococcus thermophilus (StNrdD) is the focus of this thesis. We have developed a universal liquid chromatography tandem mass spectrometry based activity assay, which was adapted for use in class III RNR, and used the assay to show that ATP is an allosteric activity enhancer and dATP is an allosteric activity inhibitor of StNrdD. We used a combination of cryogenic electron microscopy (cryo-EM) and X-ray crystallography to show that ATP and dATP bind to the StNrdD cone domain and that the cone domains adopt exceptionally different conformations in the presence of either allosteric effector. Mutagenesis assays and hydrogendeuterium exchange mass spectrometry data show that the flexible region between the cone domain and the core is important for catalysis. Changes between ATP- and dATP-binding in the cone domains underlie the observed conformational and allosteric changes. This work answers some long-standing questions surrounding class III allosteric regulation and lays the groundwork to continue improving our molecular-level understanding of this complex enzyme system.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Real-time Anticipation and Entrainment in Human-Robot Interaction</title>
<link href="https://hdl.handle.net/1721.1/165324" rel="alternate"/>
<author>
<name>Fourie, Christopher Kurt</name>
</author>
<id>https://hdl.handle.net/1721.1/165324</id>
<updated>2026-04-07T03:02:38Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Real-time Anticipation and Entrainment in Human-Robot Interaction
Fourie, Christopher Kurt
In this work, reactive control methodologies, alongside real-time methodologies for dense human motion prediction, are utilized to facilitate real-time anticipation and entrainment in human robot interaction. The technical contributions of this thesis include: extensions to dynamical systems-based modulation approaches that enable real-time circumnavigation of non-convex obstacles (NOMAD), a trajectory clustering approach based on a relaxation of dynamic time warping (TRACER), a real-time human modelling and prediction approach (HABITS), and the integration of these technologies into an anticipation and entrainment controller that enables real-time adaptive synchronization between a human and a robot. NOMAD introduces several on-manifold strategies that enable real-time navigation in the presence of non-convex obstacles, alongside a methodology for the eff icient representation of dense environments that can represent up to 240k points while maintaining a 1ms loop. TRACER is a probabilistic trajectory clustering algorithm that uses the expectation-maximization algorithm and a relaxation of dynamic time warping (Soft-DTW), with demonstrable improvement over non-probabilistic techniques such as kMedoids or DBSCAN. HABITS is an event-driven probabilistic filtering and incremental profiling framework that provides robust segmentation, prediction, and alignment estimation in real-time (25Hz) for emergent interactions in structured settings. The combination of these technologies is then demonstrated to enable both effective real-time anticipation (de-conflicting a workspace), as well as to support entrainment (long-term human-robot synchronization) in human-robot interaction.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Approaches to quantitatively analyze protein complex assembly and regulation</title>
<link href="https://hdl.handle.net/1721.1/165323" rel="alternate"/>
<author>
<name>Kinman, Laurel F.</name>
</author>
<id>https://hdl.handle.net/1721.1/165323</id>
<updated>2026-04-07T03:03:08Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Approaches to quantitatively analyze protein complex assembly and regulation
Kinman, Laurel F.
Biological macromolecular complexes occupy high-dimensional conformational landscapes corresponding to their assembly and regulation. For many protein complexes, these conformational landscapes encode diverse functional states of the complex, and indeed, there is a growing appreciation of the critical significance of protein dynamics in driving protein function. As such, there is a need for approaches to experimentally and quantitatively resolve these conformational landscapes to better understand: 1) the diverse structural states these complexes sample; 2) how these states and their dynamics are linked to biological function; and 3) how these landscapes are modulated by binding partners or environmental signals, or over the course of complex assembly. State-of-the-art structural approaches including heterogeneous cryogenic electron microscopy (cryo-EM) offer one potentially powerful mechanism for resolving these landscapes, and we present here approaches to resolve large numbers (100s-1,000s) of volumes from a single dataset. Moreover, I explore methods to analyze the resulting large volume ensembles using supervised and unsupervised approaches, and demonstrate the power of these approaches by applying them to identify a proofreading role for the universally-conserved methyltransferase KsgA in biogenesis of the bacterial small ribosomal subunit. However, many of the most highly dynamic protein complexes – involved in critical cellular processes like environmental sensing and signal transduction – remain inaccessible to structural techniques like heterogeneous cryo-EM. I suggest that combining structural approaches with high-throughput techniques, including proteomic and library-based approaches, has substantial power to shed light on the function and regulation of such complexes. As an example, I couple a high-throughput reporter assay with deep mutational scanning, finding highly distributed phosphorylation regulated assembly of the Atg1 complex in Saccharomyces cerevisiae in response to diverse environmental cues. Taken together, my work generates a toolbox of complementary approaches for quantitatively characterizing the assembly and regulation of protein complexes, and I anticipate substantial utility in applying these approaches to broadly characterize the functional and regulatory landscapes of protein complexes.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Full Body, Continuous, Wearable Ultrasound</title>
<link href="https://hdl.handle.net/1721.1/165322" rel="alternate"/>
<author>
<name>Wang, Chonghe</name>
</author>
<id>https://hdl.handle.net/1721.1/165322</id>
<updated>2026-04-07T03:02:54Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Full Body, Continuous, Wearable Ultrasound
Wang, Chonghe
In the rapidly evolving field of healthcare technology, the development of wearable ultrasound systems emerges as a groundbreaking innovation with the potential to transform patient monitoring and disease detection methodologies. This thesis, titled "Full Body, Continuous, Wearable Ultrasound," by Chonghe Wang, explores the design, implementation, and impact of two pioneering wearable ultrasound technologies: the Bioadhesive Ultrasound (BAUS) and the Adjustable Wearable Ultrasound (AWUS) systems. Aimed at enabling continuous, non-invasive monitoring of internal organ health, these systems represent a significant leap forward in medical imaging and healthcare management. At the core of the BAUS system is an innovative bioadhesive hydrogel-elastomer hybrid couplant, which facilitates the attachment of ultrasound probes directly to the skin, ensuring stable, long-term imaging. Conversely, the AWUS system employs phase-transition hydrogel couplants for dynamic adjustment of probe orientation and position, allowing for optimized imaging across multiple organs. Together, these systems offer unparalleled capabilities for full-body monitoring, with potential applications ranging from early disease detection to enhanced patient care and a deeper understanding of human physiology. Through rigorous experimental validation, this research assesses the imaging quality, physiological monitoring accuracy, durability, and comfort of the BAUS and AWUS systems. Employing advanced image processing and machine learning techniques, the study analyzes data collected from continuous imaging sessions, highlighting the systems' ability to capture dynamic physiological events and detect pathological changes. This thesis underscores the transformative potential of wearable ultrasound technology in healthcare and medical research. By shifting the paradigm from episodic to continuous monitoring, it opens new avenues for proactive health management, promising to improve patient outcomes, reduce healthcare costs, and advance our understanding of the human body.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Oxide coarsening and agglomeration during melt-based additive manufacturing of dispersion-strengthened alloys</title>
<link href="https://hdl.handle.net/1721.1/165321" rel="alternate"/>
<author>
<name>Hou, Wenyuan (Roger)</name>
</author>
<id>https://hdl.handle.net/1721.1/165321</id>
<updated>2026-04-07T03:05:50Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Oxide coarsening and agglomeration during melt-based additive manufacturing of dispersion-strengthened alloys
Hou, Wenyuan (Roger)
Dispersion-strengthened alloys densified with laser powder bed fusion, a melt-based additive manufacturing technique, have coarser dispersoids, lower dispersoid number densities, and greater tendency to form slag compared to conventional wrought dispersion-strengthened alloys. These differences degrade creep and fatigue resistance, and mitigating their extent is critical to printing high-performance components for demanding high-temperature structural applications. In this work, experiments and modeling were used to assess how printing parameters, alloy chemistry, and powder feedstock collectively affect dispersoid evolution and slag formation. Laser powder bed fusion parameter studies were used to assess the effects in Ni-20Cr-Y₂O₃ feedstock produced via resonant acoustic mixing then consolidated with systematic variations in laser parameters (power, speed), Y₂O₃ concentration, and Al content. Dispersoid structure was subsequently characterized using small angle neutron scattering. The finest dispersion achieved among fully dense (&gt;99.5 rel. density) specimens has mean dispersoid diameter 21 nm and number density 230 μm-3. Dispersoid diameter was shown to decrease with the following adjustments: decreasing laser power, increasing scan speed, decreasing Y₂O₃ concentration, and keeping Al content below 0.3 wt%. Model predictions for dispersoid diameter were consistent with experimental values, and several key factors which influence the evolution of dispersoids were identified: convection-influenced thermal excursion, Y₂O₃ solubility, reaction with Al, nucleation, and diffusion-driven growth. The model also considers oxide dissolution over multiple melt cycles to establish bounds for slag-free printing of ODS alloys, showing a tradeoff between build rate and the quality of the oxide feedstock.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Geometry, packing, and synchronization in three-dimensional (3D) multicellular development and diseases</title>
<link href="https://hdl.handle.net/1721.1/165320" rel="alternate"/>
<author>
<name>Tang, Wenhui</name>
</author>
<id>https://hdl.handle.net/1721.1/165320</id>
<updated>2026-04-07T03:03:05Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Geometry, packing, and synchronization in three-dimensional (3D) multicellular development and diseases
Tang, Wenhui
Three-dimensional (3D) multicellular systems, along with their developmental and pathological processes, present unique features compare to 2D flat systems. Both the spatial organization and temporal cell dynamics can be influenced by fundamental difference in cell-microenvironment interactions, cell mechanics, as well as cell physical properties. However, the effort to understanding the fundamental physics and mechanics is limited due to the constraint in 3D techniques. Moreover, the evolving multicellular properties during biological processes are unclear. In this thesis, we systematically study the geometry, packing, and synchronization in three-dimensional multicellular development and diseases.&#13;
&#13;
First, we give a perspective on the emerging evidence of 3D tissue geometry in guiding morphogenesis and abnormal growth during diseases. We review the effort in fabricating various tissue-mimicking structures to study collective cell behaviors, and emphasize how tissue geometry influences physical, mechanical, and biological properties. At the end, we propose future directions, challenges, and potential applications in geometry-induced stem cell therapeutics.&#13;
&#13;
Second, we report a surprising result that cells can feel the substrate curvature that they live on. We find that epithelial cells tend to form hexagonal packs to minimize the free energy; cells in these hexagonal packs are more solid-like compared to the cells out of packs. As a result, when the substrate curvature increases, the size of these hexagonal cell packs decreases to release bending energy. Therefore, on more curved surface, we observe a more fluid-like cell monolayer with more active cell dynamics and less collectiveness. Such behavior is observed not only on fabricated geometries, but also on a spontaneously growing human lung alveolosphere system in 3D derived from human induced pluripotent stem cells.&#13;
&#13;
Third, as building blocks of life, cells actively coordinate their positions to form various structures and perform functions. A central question is how do cells in three-dimensional organisms accurately arrange their positions and morphology on curved structures during development? We observe an emergence of topological order, specifically a topological gas-to-liquid transition, during the growth of human lung alveolospheres, regulated by the increasing nucleus-to-cell size ratio. Our finding reveals the critical role of cell nuclear size in regulating cell packing during tissue development, and suggests the importance of topological phase changes in establishing tissue stability.&#13;
&#13;
Last, from a temporal perspective, we report an experimental observation of large-scale synchronized oscillations generated by sustained contraction and expansion, revealing un- expected phase dynamics in epithelia. We then apply this temporal analysis to studying proliferating epithelia undergoing jamming transition and cancer invasion across various degrees of malignancy. Remarkably, this method provides an original perspective to assess the stage of tissue development, estimate cancer malignancy level, as well as distinguish healthy tissues from the diseased ones.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multidimensional MOF Mixed Matrix Membranes for Efficient Gas Separation</title>
<link href="https://hdl.handle.net/1721.1/165319" rel="alternate"/>
<author>
<name>Lee, Hyunhee</name>
</author>
<id>https://hdl.handle.net/1721.1/165319</id>
<updated>2026-04-07T03:02:53Z</updated>
<published>2023-09-01T00:00:00Z</published>
<summary type="text">Multidimensional MOF Mixed Matrix Membranes for Efficient Gas Separation
Lee, Hyunhee
Membrane separations are crucial in the chemical industry, with polymeric materials traditionally used due to their cost and mechanical benefits. However, they face challenges in permeability–selectivity trade-off, and in stability. Metal–organic frameworks (MOFs) offer potential solutions with their customizable properties but are difficult to manufacture. Mixed-matrix membranes (MMMs), which incorporate MOFs into polymers, mitigate some issues, yet high MOF loading can lead to aggregation and voids. This thesis investigates the promising potential of MMMs for efficient and improved gas separation, leveraging unique morphologies and understanding the dynamics of MOF–polymer interactions. First, the novel branch-shaped ZIF-8 (BZ) was developed and incorporated into polymer matrix, which successfully established a percolated network at loadings as low as 20 wt%, showing permeability boost. Also, it showed suppressed polymer chain dynamics and a smaller diffusion cut-off than traditional ZIF-8, which resulted in an enhanced membrane stability and superior performance in H₂-based separations. BZ was studied further by investigating temperature-dependent properties of MMMs. BZ and control ZIF-8 (CZ) MMMs exhibited unique gas transport behaviour in relation to temperature shifts, with BZ MMM demonstrating more significant temperature dependence for H₂-based separations. As temperature decreases, the H₂/CH₄ permselectivity of BZ MMMs&#13;
drastically increases, with minor changes in H₂ permeability. Conversely, at higher temperatures, separation performance aligns with that of CZ MMM, showing continuous yet broad control over the gas performance. To understand the origin of this selectivity difference, facet-specific gas transport in polymer nanocomposites was studied with the hypothesis of BZ consist of facet 100, which characterize less thermally stable polymorph, cubes. A key finding is the interaction between 100 facet and polyimides, which enhances hydrogen-based and ethylene/ethane separation, particularly at subambient temperatures, which is consistent with the trend observed for BZ MMMs. In conclusion, this thesis addresses the enhancement of MMMs through innovative morphological approaches, where percolated network enhances permeability and 100 facet termination may restrict the MOF–polymer interphase confinement, leading to high selectivity for small gas pairs, which is very difficult to achieve at the same time. The temperature effects and facet-termination effects on gas transport in MMMs can also offer substantial contributions to the development and optimization of mixed matrix membranes for efficient gas separations.
</summary>
<dc:date>2023-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Impact of lesion preparation-induced calcium fractures in vascular intervention&#13;
for atherosclerotic disease: in silico assessment</title>
<link href="https://hdl.handle.net/1721.1/165318" rel="alternate"/>
<author>
<name>Sogbadji, Jonas</name>
</author>
<id>https://hdl.handle.net/1721.1/165318</id>
<updated>2026-04-07T03:05:48Z</updated>
<published>2023-06-01T00:00:00Z</published>
<summary type="text">Impact of lesion preparation-induced calcium fractures in vascular intervention&#13;
for atherosclerotic disease: in silico assessment
Sogbadji, Jonas
Atherosclerosis is the most common form of obstructive vascular disease and is the predominant cause of mortality world-wide. Endovascular interventions like balloon angioplasty and stent implantation have dominated as therapies with tremendous impact and yet are least effective in most severe disease – especially those with heavily calcified lesions.&#13;
&#13;
Intravascular lithotripsy (IVL) has been proposed to “prepare” lesions and optimize endovascular intervention with the idea of removing and/or modifying lesions resistive stiffness so as to make balloon or stent placement more effective. Despite clinical enthusiasm, there remains a lack of understanding as to how this occurs, and which lesions would be most amenable to and most affected by IVL.&#13;
&#13;
The range and extent of lesions are substantial presenting a formidable challenge in managing their modification. This complexity hampers the extrapolation of findings from both clinical and preclinical models. In silico models offer a means by which to examine diverse lesion morphologies and a range of lesion modifications to address these deficiencies, and in particular to understand if there is a correlation between calcium morphology alteration and improvement of stenting outcomes. We build a computational platform to connect stenting outcomes to IVL induced calcium modification. Three models were inspired by clinical optical coherence tomography image analyses and a stenting procedure was simulated for a number of variations within each model. Results show that expansion of stents and treated arteries rose with the volume of tissue affected and excised. For one particular model, stent expansion reached a local maximum. 3 In silico models provide a valuable perspective for considering complex vascular interventions – not only in simulating effects that are challenging to recapitulate in preclinical models but in helping develop a tool that can predict susceptible candidate lesions and help determine the ideal extent of lesion modification to optimize overall effect.
</summary>
<dc:date>2023-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Chemically Circumventing the Oxidative Instability of Boronic Acids for Biological Applications</title>
<link href="https://hdl.handle.net/1721.1/165317" rel="alternate"/>
<author>
<name>FitzGerald, Forrest Grant</name>
</author>
<id>https://hdl.handle.net/1721.1/165317</id>
<updated>2026-04-07T03:03:03Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Chemically Circumventing the Oxidative Instability of Boronic Acids for Biological Applications
FitzGerald, Forrest Grant
Boronic acids are more than just chemical reagents used in synthetic organic chemistry. They are life-saving chemo- and radiotherapeutics, optical imaging agents, chemical sensors of biological stress, hydrogels, nanomaterials, and so much more. While the literature is rich with applications of boronic acids, there is much room for improvement. From the environment we live in, to the biochemical transformations that drive cellular respiration, oxidation is a common thread. Boronic acids are highly susceptible to oxidation by reactive oxygen species that are continuously generated in these environments, and though boronic acids have found wide use, their utility is limited by their short lifetimes due to this form a degradation. We sought to find chemical solutions for this instability. Benzoxaborolone, a boralactone, was previously developed in the Raines lab as an oxidatively stable arylboronic acid. In this current work, we demonstrate that this oxidative stability is enhanced by electron-withdrawing functional groups and reduced by electron-donating functional groups appended to the aryl ring. Applying principles of physical organic chemistry, we reasoned that this electronic impact is predictable depending on the identity of the functional group, with valuable insights for use in medicinal chemistry and chemical biology. Next, we demonstrated that a benzoxaborolone–fluorophore conjugate is an equally effective glycan imaging reagent compared to the commonly used phenylboronic acid-bearing reagent, yet is more stable and thus versatile. We designed this reagent to be a general-use minimalistic glycan-binding reagent with high diffusivity and modularity. We then used this reagent to explore the diverse organ-specific glycome in mice, leveraging recently reported techniques in expansion microscopy to acquire fluorescence images in nanoscale resolution. Finally, we took a new approach to circumventing the chemical instability of boronic acids in biological settings. Bortezomib is a highly potent alkylboronic acid chemotherapeutic that has been a mainstay in the clinic for the treatment of multiple myeloma for nearly twenty-five years. Unfortunately, it is highly susceptible to oxidation and thus prone to inactivation during synthesis, storage, and administration. Substituting in an aromatic, oxidatively stable benzoxaborolone is not an effective strategy for bortezomib, as it would completely change the chemical structure and abrogate activity. Instead, we leveraged a popular boronic acid protecting group, Nmethyliminodiacetic acid (MIDA), used primarily in organic chemistry, to create a bench-stable, oxidation-resistant bortezomib that retains its cytotoxic potency toward cancer cells. Furthermore, we uncovered for the first time that the MIDA protecting group may be susceptible to esterase-mediated hydrolysis, paving a path towards potential prodrug applications in the future.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, Dean, Sloan School</title>
<link href="https://hdl.handle.net/1721.1/165316" rel="alternate"/>
<author>
<name>Locke, Richard</name>
</author>
<id>https://hdl.handle.net/1721.1/165316</id>
<updated>2026-04-07T03:53:28Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, Dean, Sloan School
Locke, Richard
This report contains the following sections: Introduction, Faculty and Research, Academic Programs, Executive Education, Office of External Relations, MIT Sloan Management Review, MIT Sloan Global Programs, and Conclusion.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, Division of Student Life</title>
<link href="https://hdl.handle.net/1721.1/165315" rel="alternate"/>
<author>
<name>Nelson, Suzy</name>
</author>
<id>https://hdl.handle.net/1721.1/165315</id>
<updated>2026-04-07T03:53:20Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, Division of Student Life
Nelson, Suzy
This report contains the following sections: DSL Mission, Goals, Accomplishments, and Program Updates.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Transcriptome-wide mapping reveals a diverse dihydrouridine landscape including mRNA</title>
<link href="https://hdl.handle.net/1721.1/165314" rel="alternate"/>
<author>
<name>Draycott, Austin S</name>
</author>
<author>
<name>Schaening-Burgos, Cassandra</name>
</author>
<author>
<name>Rojas-Duran, Maria F</name>
</author>
<author>
<name>Wilson, Loren</name>
</author>
<author>
<name>Schärfen, Leonard</name>
</author>
<author>
<name>Neugebauer, Karla M</name>
</author>
<author>
<name>Nachtergaele, Sigrid</name>
</author>
<author>
<name>Gilbert, Wendy V</name>
</author>
<id>https://hdl.handle.net/1721.1/165314</id>
<updated>2026-04-25T03:13:34Z</updated>
<published>2022-05-24T00:00:00Z</published>
<summary type="text">Transcriptome-wide mapping reveals a diverse dihydrouridine landscape including mRNA
Draycott, Austin S; Schaening-Burgos, Cassandra; Rojas-Duran, Maria F; Wilson, Loren; Schärfen, Leonard; Neugebauer, Karla M; Nachtergaele, Sigrid; Gilbert, Wendy V
Dihydrouridine is a modified nucleotide universally present in tRNAs, but the complete dihydrouridine landscape is unknown in any organism. We introduce dihydrouridine sequencing (D-seq) for transcriptome-wide mapping of D with single-nucleotide resolution and use it to uncover novel classes of dihydrouridine-containing RNA in yeast which include mRNA and small nucleolar RNA (snoRNA). The novel D sites are concentrated in conserved stem-loop regions consistent with a role for D in folding many functional RNA structures. We demonstrate dihydrouridine synthase (DUS)-dependent changes in splicing of a D-containing pre-mRNA in cells and show that D-modified mRNAs can be efficiently translated by eukaryotic ribosomes in vitro. This work establishes D as a new functional component of the mRNA epitranscriptome and paves the way for identifying the RNA targets of multiple DUS enzymes that are dysregulated in human disease.
</summary>
<dc:date>2022-05-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>SARS-CoV-2 antibodies protect against reinfection for at least 6 months in a multicentre seroepidemiological workplace cohort</title>
<link href="https://hdl.handle.net/1721.1/165313" rel="alternate"/>
<author>
<name>Finch, Emilie</name>
</author>
<author>
<name>Lowe, Rachel</name>
</author>
<author>
<name>Fischinger, Stephanie</name>
</author>
<author>
<name>de St Aubin, Michael</name>
</author>
<author>
<name>Siddiqui, Sameed M</name>
</author>
<author>
<name>Dayal, Diana</name>
</author>
<author>
<name>Loesche, Michael A</name>
</author>
<author>
<name>Rhee, Justin</name>
</author>
<author>
<name>Beger, Samuel</name>
</author>
<author>
<name>Hu, Yiyuan</name>
</author>
<author>
<name>Gluck, Matthew J</name>
</author>
<author>
<name>Mormann, Benjamin</name>
</author>
<author>
<name>Hasdianda, Mohammad A</name>
</author>
<author>
<name>Musk, Elon R</name>
</author>
<author>
<name>Alter, Galit</name>
</author>
<author>
<name>Menon, Anil S</name>
</author>
<author>
<name>Nilles, Eric J</name>
</author>
<author>
<name>Kucharski, Adam J</name>
</author>
<id>https://hdl.handle.net/1721.1/165313</id>
<updated>2026-04-24T03:16:22Z</updated>
<published>2022-02-10T00:00:00Z</published>
<summary type="text">SARS-CoV-2 antibodies protect against reinfection for at least 6 months in a multicentre seroepidemiological workplace cohort
Finch, Emilie; Lowe, Rachel; Fischinger, Stephanie; de St Aubin, Michael; Siddiqui, Sameed M; Dayal, Diana; Loesche, Michael A; Rhee, Justin; Beger, Samuel; Hu, Yiyuan; Gluck, Matthew J; Mormann, Benjamin; Hasdianda, Mohammad A; Musk, Elon R; Alter, Galit; Menon, Anil S; Nilles, Eric J; Kucharski, Adam J
Identifying the potential for SARS-CoV-2 reinfection is crucial for understanding possible long-term epidemic dynamics. We analysed longitudinal PCR and serological testing data from a prospective cohort of 4,411 United States employees in 4 states between April 2020 and February 2021. We conducted a multivariable logistic regression investigating the association between baseline serological status and subsequent PCR test result in order to calculate an odds ratio for reinfection. We estimated an odds ratio for reinfection ranging from 0.14 (95% CI: 0.019 to 0.63) to 0.28 (95% CI: 0.05 to 1.1), implying that the presence of SARS-CoV-2 antibodies at baseline is associated with around 72% to 86% reduced odds of a subsequent PCR positive test based on our point estimates. This suggests that primary infection with SARS-CoV-2 provides protection against reinfection in the majority of individuals, at least over a 6-month time period. We also highlight 2 major sources of bias and uncertainty to be considered when estimating the relative risk of reinfection, confounders and the choice of baseline time point, and show how to account for both in reinfection analysis.
</summary>
<dc:date>2022-02-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Persona2vec: a flexible multi-role representations learning framework for graphs</title>
<link href="https://hdl.handle.net/1721.1/165312" rel="alternate"/>
<author>
<name>Yoon, Jisung</name>
</author>
<author>
<name>Yang, Kai-Cheng</name>
</author>
<author>
<name>Jung, Woo-Sung</name>
</author>
<author>
<name>Ahn, Yong-Yeol</name>
</author>
<id>https://hdl.handle.net/1721.1/165312</id>
<updated>2026-04-24T03:16:18Z</updated>
<published>2021-03-30T00:00:00Z</published>
<summary type="text">Persona2vec: a flexible multi-role representations learning framework for graphs
Yoon, Jisung; Yang, Kai-Cheng; Jung, Woo-Sung; Ahn, Yong-Yeol
Graph embedding techniques, which learn low-dimensional representations of a graph, are achieving state-of-the-art performance in many graph mining tasks. Most existing embedding algorithms assign a single vector to each node, implicitly assuming that a single representation is enough to capture all characteristics of the node. However, across many domains, it is common to observe pervasively overlapping community structure, where most nodes belong to multiple communities, playing different roles depending on the contexts. Here, we propose persona2vec, a graph embedding framework that efficiently learns multiple representations of nodes based on their structural contexts. Using link prediction-based evaluation, we show that our framework is significantly faster than the existing state-of-the-art model while achieving better performance.
</summary>
<dc:date>2021-03-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Chemically induced reprogramming to reverse cellular aging</title>
<link href="https://hdl.handle.net/1721.1/165311" rel="alternate"/>
<author>
<name>Yang, Jae-Hyun</name>
</author>
<author>
<name>Petty, Christopher A</name>
</author>
<author>
<name>Dixon-McDougall, Thomas</name>
</author>
<author>
<name>Lopez, Maria Vina</name>
</author>
<author>
<name>Tyshkovskiy, Alexander</name>
</author>
<author>
<name>Maybury-Lewis, Sun</name>
</author>
<author>
<name>Tian, Xiao</name>
</author>
<author>
<name>Ibrahim, Nabilah</name>
</author>
<author>
<name>Chen, Zhili</name>
</author>
<author>
<name>Griffin, Patrick T</name>
</author>
<author>
<name>Arnold, Matthew</name>
</author>
<author>
<name>Li, Jien</name>
</author>
<author>
<name>Martinez, Oswaldo A</name>
</author>
<author>
<name>Behn, Alexander</name>
</author>
<author>
<name>Rogers-Hammond, Ryan</name>
</author>
<author>
<name>Angeli, Suzanne</name>
</author>
<author>
<name>Gladyshev, Vadim N</name>
</author>
<author>
<name>Sinclair, David A</name>
</author>
<id>https://hdl.handle.net/1721.1/165311</id>
<updated>2026-04-25T03:13:28Z</updated>
<published>2023-07-12T00:00:00Z</published>
<summary type="text">Chemically induced reprogramming to reverse cellular aging
Yang, Jae-Hyun; Petty, Christopher A; Dixon-McDougall, Thomas; Lopez, Maria Vina; Tyshkovskiy, Alexander; Maybury-Lewis, Sun; Tian, Xiao; Ibrahim, Nabilah; Chen, Zhili; Griffin, Patrick T; Arnold, Matthew; Li, Jien; Martinez, Oswaldo A; Behn, Alexander; Rogers-Hammond, Ryan; Angeli, Suzanne; Gladyshev, Vadim N; Sinclair, David A
A hallmark of eukaryotic aging is a loss of epigenetic information, a process that can be reversed. We have previously shown that the ectopic induction of the Yamanaka factors OCT4, SOX2, and KLF4 (OSK) in mammals can restore youthful DNA methylation patterns, transcript profiles, and tissue function, without erasing cellular identity, a process that requires active DNA demethylation. To screen for molecules that reverse cellular aging and rejuvenate human cells without altering the genome, we developed high-throughput cell-based assays that distinguish young from old and senescent cells, including transcription-based aging clocks and a real-time nucleocytoplasmic compartmentalization (NCC) assay. We identify six chemical cocktails, which, in less than a week and without compromising cellular identity, restore a youthful genome-wide transcript profile and reverse transcriptomic age. Thus, rejuvenation by age reversal can be achieved, not only by genetic, but also chemical means.
</summary>
<dc:date>2023-07-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>High-Level Expression and Biochemical Properties of A Thermo-Alkaline Pectate Lyase From Bacillus sp. RN1 in Pichia pastoris With Potential in Ramie Degumming</title>
<link href="https://hdl.handle.net/1721.1/165310" rel="alternate"/>
<author>
<name>Zheng, Xueyun</name>
</author>
<author>
<name>Zhang, Yimin</name>
</author>
<author>
<name>Liu, Xiaoxiao</name>
</author>
<author>
<name>Li, Cheng</name>
</author>
<author>
<name>Lin, Ying</name>
</author>
<author>
<name>Liang, Shuli</name>
</author>
<id>https://hdl.handle.net/1721.1/165310</id>
<updated>2026-04-24T03:16:26Z</updated>
<published>2020-07-24T00:00:00Z</published>
<summary type="text">High-Level Expression and Biochemical Properties of A Thermo-Alkaline Pectate Lyase From Bacillus sp. RN1 in Pichia pastoris With Potential in Ramie Degumming
Zheng, Xueyun; Zhang, Yimin; Liu, Xiaoxiao; Li, Cheng; Lin, Ying; Liang, Shuli
Pectate lyases play an essential role in textiles, animal feed, and oil extraction industries. Pichia pastoris can be an ideal platform for pectate lyases production, and BspPel (a thermo-alkaline pectate lyase from Bacillus sp. RN1) was overexpressed by combined strategies, reaching 1859 U/mL in a 50 L fermentator. It displayed the highest activity at 80°C, and maintained more than 60% of the activity between 30 and 70°C for 1 h. It showed an optimal pH of 10.0, and exhibited remarkable stability over a wider pH range (3.0-11.0), retaining more than 80.0% of enzyme activity for 4 h. The Km and kcat of BspPel on PGA (polygalacturonic acid) was 2.19 g L–1 and 116.1 s–1, respectively. The activity was significantly enhanced by Ca2+, Mn2+, and Cu2+, and a slight increase was observed with the addition of Ba2+ and Mg2+. Scanning electron microscope was used to show the degumming efficiency of BspPel on ramie fibers. The loss weight was 9.2% when treated with crude enzyme supernatant and 20.8% when treated with the enzyme-chemical method, which was higher than the 14.2% weight loss in the positive control treated with 0.5% (w/v) NaOH alone. In conclusion, BspPel could be a good candidate for the ramie degumming industry.
</summary>
<dc:date>2020-07-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Growth Factor Engineering Strategies for Regenerative Medicine Applications</title>
<link href="https://hdl.handle.net/1721.1/165309" rel="alternate"/>
<author>
<name>Ren, Xiaochen</name>
</author>
<author>
<name>Zhao, Moyuan</name>
</author>
<author>
<name>Lash, Blake</name>
</author>
<author>
<name>Martino, Mikaël M</name>
</author>
<author>
<name>Julier, Ziad</name>
</author>
<id>https://hdl.handle.net/1721.1/165309</id>
<updated>2026-04-25T03:15:44Z</updated>
<published>2020-01-21T00:00:00Z</published>
<summary type="text">Growth Factor Engineering Strategies for Regenerative Medicine Applications
Ren, Xiaochen; Zhao, Moyuan; Lash, Blake; Martino, Mikaël M; Julier, Ziad
Growth factors are critical molecules for tissue repair and regeneration. Therefore, recombinant growth factors have raised a lot of hope for regenerative medicine applications. While using growth factors to promote tissue healing has widely shown promising results in pre-clinical settings, their success in the clinic is not a forgone conclusion. Indeed, translation of growth factors is often limited by their short half-life, rapid diffusion from the delivery site, and low cost-effectiveness. Trying to circumvent those limitations by the use of supraphysiological doses has led to serious side-effects in many cases and therefore innovative technologies are required to improve growth factor-based regenerative strategies. In this review, we present protein engineering approaches seeking to improve growth factor delivery and efficacy while reducing doses and side effects. We focus on engineering strategies seeking to improve affinity of growth factors for biomaterials or the endogenous extracellular matrix. Then, we discuss some examples of increasing growth factor stability and bioactivity, and propose new lines of research that the field of growth factor engineering for regenerative medicine may adopt in the future.
</summary>
<dc:date>2020-01-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantification of muscle fiber malformations using edge detection to investigate chronic muscle pressure ulcers</title>
<link href="https://hdl.handle.net/1721.1/165308" rel="alternate"/>
<author>
<name>Ong, Charlene ZL</name>
</author>
<author>
<name>Nasir, N Jannah M</name>
</author>
<author>
<name>Welsch, Roy E</name>
</author>
<author>
<name>Tucker-Kellogg, Lisa</name>
</author>
<author>
<name>Rajapakse, Jagath C</name>
</author>
<id>https://hdl.handle.net/1721.1/165308</id>
<updated>2026-04-25T03:14:09Z</updated>
<published>2024-10-21T00:00:00Z</published>
<summary type="text">Quantification of muscle fiber malformations using edge detection to investigate chronic muscle pressure ulcers
Ong, Charlene ZL; Nasir, N Jannah M; Welsch, Roy E; Tucker-Kellogg, Lisa; Rajapakse, Jagath C
Background: Microscopy of regenerated tissue shows different morphologies between the healing of acute wounds and chronic wounds. This difference can be seen manually by biologists, but computational methods are needed to automate the characterization of morphology and regenerative quality in regenerated muscle tissue. Results: From the detected edge segments, we computed several imaging biomarkers of interest, such as median tortuosity, number of edge segments normalized by area, median edge segment distance and interquartile range of orientation angles of edge segments of the microscope images of successful and unsuccessful muscle regeneration. We observed that muscle fibers in saline-treated pressure ulcers had a larger interquartile range of orientation angles of the edge segments (p = 0.05) and shorter edge segment distances (p = 0.003) compared to those of acute cardiotoxin injuries. Conclusion: Our edge detection method was able to identify statistically significant differences in some of the imaging biomarkers between saline-treated pressure ulcers and cardiotoxin injuries, suggesting that chronic pressure ulcers have increased muscle fiber malformations compared to cardiotoxin injuries.
</summary>
<dc:date>2024-10-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fast and Fourier: extreme mass ratio inspiral waveforms in the frequency domain</title>
<link href="https://hdl.handle.net/1721.1/165307" rel="alternate"/>
<author>
<name>Speri, Lorenzo</name>
</author>
<author>
<name>Katz, Michael L</name>
</author>
<author>
<name>Chua, Alvin JK</name>
</author>
<author>
<name>Hughes, Scott A</name>
</author>
<author>
<name>Warburton, Niels</name>
</author>
<author>
<name>Thompson, Jonathan E</name>
</author>
<author>
<name>Chapman-Bird, Christian EA</name>
</author>
<author>
<name>Gair, Jonathan R</name>
</author>
<id>https://hdl.handle.net/1721.1/165307</id>
<updated>2026-04-25T03:14:48Z</updated>
<published>2024-01-12T00:00:00Z</published>
<summary type="text">Fast and Fourier: extreme mass ratio inspiral waveforms in the frequency domain
Speri, Lorenzo; Katz, Michael L; Chua, Alvin JK; Hughes, Scott A; Warburton, Niels; Thompson, Jonathan E; Chapman-Bird, Christian EA; Gair, Jonathan R
Extreme Mass Ratio Inspirals (EMRIs) are one of the key sources for future spacebased gravitational wave interferometers. Measurements of EMRI gravitational waves are expected to determine the characteristics of their sources with subpercent precision. However, their waveform generation is challenging due to the long duration of the signal and the high harmonic content. Here, we present the first ready-to-use Schwarzschild eccentric EMRI waveform implementation in the frequency domain for use with either graphics processing units (GPUs) or central processing units (CPUs). We present the overall waveform implementation and test the accuracy and performance of the frequency domain waveforms against the time domain implementation. On GPUs, the frequency domain waveform takes in median 0.044 s to generate and is twice as fast to compute as its time domain counterpart when considering massive black hole masses ≥ 2 × 106 M⊙ and initial eccentricities e0 &gt; 0.2. On CPUs, the median waveform evaluation time is 5 s, and it is five times faster in the frequency domain than in the time domain. Using a sparser frequency array can further speed up the waveform generation, reaching up to 0.3 s. This enables us to perform, for the first time, EMRI parameter inference with fully relativistic waveforms on CPUs. Future EMRI models, which encompass wider source characteristics (particularly black hole spin and generic orbit geometries), will require significantly more harmonics. Frequency domain models will be essential analysis tools for these astrophysically realistic and important signals.
</summary>
<dc:date>2024-01-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Eigenvalue lower bounds and splitting for modified Ricci flow</title>
<link href="https://hdl.handle.net/1721.1/165306" rel="alternate"/>
<author>
<name>Colding, Tobias Holck</name>
</author>
<author>
<name>Minicozzi II, William P</name>
</author>
<id>https://hdl.handle.net/1721.1/165306</id>
<updated>2026-04-25T03:15:36Z</updated>
<published>2024-03-08T00:00:00Z</published>
<summary type="text">Eigenvalue lower bounds and splitting for modified Ricci flow
Colding, Tobias Holck; Minicozzi II, William P
We prove sharp lower bounds for eigenvalues of the drift Laplacian for a modified Ricci flow. The modified Ricci flow is a system of coupled equations for a metric and weighted volume that plays an important role in Ricci flow. We will also show that there is a splitting theorem in the case of equality.
</summary>
<dc:date>2024-03-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Propagation of symmetries for Ricci shrinkers</title>
<link href="https://hdl.handle.net/1721.1/165305" rel="alternate"/>
<author>
<name>Colding, Tobias Holck</name>
</author>
<author>
<name>Minicozzi II, William P</name>
</author>
<id>https://hdl.handle.net/1721.1/165305</id>
<updated>2026-04-25T03:13:54Z</updated>
<published>2023-06-13T00:00:00Z</published>
<summary type="text">Propagation of symmetries for Ricci shrinkers
Colding, Tobias Holck; Minicozzi II, William P
We will show that if a gradient shrinking Ricci soliton has an approximate symmetry on one scale, this symmetry propagates to larger scales. This is an example of the shrinker principle which roughly states that information radiates outwards for shrinking solitons.
</summary>
<dc:date>2023-06-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>The effects of morphology, mobility size, and secondary organic aerosol (SOA) material coating on the ice nucleation activity of black carbon in the cirrus regime</title>
<link href="https://hdl.handle.net/1721.1/165304" rel="alternate"/>
<author>
<name>Zhang, Cuiqi</name>
</author>
<author>
<name>Zhang, Yue</name>
</author>
<author>
<name>Wolf, Martin J</name>
</author>
<author>
<name>Nichman, Leonid</name>
</author>
<author>
<name>Shen, Chuanyang</name>
</author>
<author>
<name>Onasch, Timothy B</name>
</author>
<author>
<name>Chen, Longfei</name>
</author>
<author>
<name>Cziczo, Daniel J</name>
</author>
<id>https://hdl.handle.net/1721.1/165304</id>
<updated>2026-05-08T03:12:11Z</updated>
<published>2020-11-19T00:00:00Z</published>
<summary type="text">The effects of morphology, mobility size, and secondary organic aerosol (SOA) material coating on the ice nucleation activity of black carbon in the cirrus regime
Zhang, Cuiqi; Zhang, Yue; Wolf, Martin J; Nichman, Leonid; Shen, Chuanyang; Onasch, Timothy B; Chen, Longfei; Cziczo, Daniel J
There is evidence that black carbon (BC) particles may affect cirrus formation and, hence, global climate by acting as potential ice nucleating particles (INPs) in the troposphere. Nevertheless, the ice nucleation (IN) ability of bare BC and BC coated with secondary organic aerosol (SOA) material remains uncertain. We have systematically examined the IN ability of 100–400 nm size-selected BC particles with different morphologies and different SOA coatings representative of anthropogenic (toluene and n-dodecane) and biogenic (β-caryophyllene) sources in the cirrus regime (−46 to −38 ∘C). Several BC proxies were selected to represent different particle morphologies and oxidation levels. Atmospheric aging was further replicated with the exposure of SOA-coated BC to OH. The results demonstrate that the 400 nm hydrophobic BC types nucleate ice only at or near the homogeneous freezing threshold. Ice formation at cirrus temperatures below homogeneous freezing thresholds, as opposed to purely homogeneous freezing, was observed to occur for some BC types between 100 and 200 nm within the investigated temperature range. More fractal BC particles did not consistently act as superior INPs over more spherical ones. SOA coating generated by oxidizing β-caryophyllene with O3 did not seem to affect BC IN ability, probably due to an SOA-phase state transition. However, SOA coatings generated from OH oxidation of various organic species did exhibit higher IN-onset supersaturation ratio with respect to ice (SSi), compared with bare BC particles, with the toluene-SOA coating showing an increase in SSi of 0.1–0.15 while still below the homogeneous freezing threshold. Slightly oxidized toluene SOA coating seemed to have a stronger deactivation effect on BC IN ability than highly oxidized toluene SOA, which might be caused by oligomer formation and the phase state transition of toluene SOA under different oxidation levels. n-dodecane and β-caryophyllene-derived SOA-coated BC only froze in the homogeneous regime. We attribute the inhibition of IN ability to the filling of the pores on the BC surface by the SOA material coating. OH exposure levels of n-dodecane and β-caryophyllene SOA coating experiments, from an equivalent atmospheric exposure time from 10 to 90 d, did not render significant differences in the IN potential. Our study of selected BC types and sizes suggests that increases in diameter, compactness, and/or surface oxidation of BC particles lead to more efficient IN via the pore condensation freezing (PCF) pathway, and that coatings of common SOA materials can inhibit the formation of ice.
</summary>
<dc:date>2020-11-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>A machine learning examination of hydroxyl radical differences among model simulations for CCMI-1</title>
<link href="https://hdl.handle.net/1721.1/165303" rel="alternate"/>
<author>
<name>Nicely, Julie M</name>
</author>
<author>
<name>Duncan, Bryan N</name>
</author>
<author>
<name>Hanisco, Thomas F</name>
</author>
<author>
<name>Wolfe, Glenn M</name>
</author>
<author>
<name>Salawitch, Ross J</name>
</author>
<author>
<name>Deushi, Makoto</name>
</author>
<author>
<name>Haslerud, Amund S</name>
</author>
<author>
<name>Jöckel, Patrick</name>
</author>
<author>
<name>Josse, Béatrice</name>
</author>
<author>
<name>Kinnison, Douglas E</name>
</author>
<author>
<name>Klekociuk, Andrew</name>
</author>
<author>
<name>Manyin, Michael E</name>
</author>
<author>
<name>Marécal, Virginie</name>
</author>
<author>
<name>Morgenstern, Olaf</name>
</author>
<author>
<name>Murray, Lee T</name>
</author>
<author>
<name>Myhre, Gunnar</name>
</author>
<author>
<name>Oman, Luke D</name>
</author>
<author>
<name>Pitari, Giovanni</name>
</author>
<author>
<name>Pozzer, Andrea</name>
</author>
<author>
<name>Quaglia, Ilaria</name>
</author>
<author>
<name>Revell, Laura E</name>
</author>
<author>
<name>Rozanov, Eugene</name>
</author>
<author>
<name>Stenke, Andrea</name>
</author>
<author>
<name>Stone, Kane</name>
</author>
<author>
<name>Strahan, Susan</name>
</author>
<author>
<name>Tilmes, Simone</name>
</author>
<author>
<name>Tost, Holger</name>
</author>
<author>
<name>Westervelt, Daniel M</name>
</author>
<author>
<name>Zeng, Guang</name>
</author>
<id>https://hdl.handle.net/1721.1/165303</id>
<updated>2026-05-08T03:13:16Z</updated>
<published>2020-02-05T00:00:00Z</published>
<summary type="text">A machine learning examination of hydroxyl radical differences among model simulations for CCMI-1
Nicely, Julie M; Duncan, Bryan N; Hanisco, Thomas F; Wolfe, Glenn M; Salawitch, Ross J; Deushi, Makoto; Haslerud, Amund S; Jöckel, Patrick; Josse, Béatrice; Kinnison, Douglas E; Klekociuk, Andrew; Manyin, Michael E; Marécal, Virginie; Morgenstern, Olaf; Murray, Lee T; Myhre, Gunnar; Oman, Luke D; Pitari, Giovanni; Pozzer, Andrea; Quaglia, Ilaria; Revell, Laura E; Rozanov, Eugene; Stenke, Andrea; Stone, Kane; Strahan, Susan; Tilmes, Simone; Tost, Holger; Westervelt, Daniel M; Zeng, Guang
The hydroxyl radical (OH) plays critical roles within the troposphere, such as determining the lifetime of methane (CH4), yet is challenging to model due to its fast cycling and dependence on a multitude of sources and sinks. As a result, the reasons for variations in OH and the resulting methane lifetime (τCH4 ), both between models and in time, are difficult to diagnose. We apply a neural network (NN) approach to address this issue within a group of models that participated in the Chemistry-Climate Model Initiative (CCMI). Analysis of the historical specified dynamics simulations performed for CCMI indicates that the primary drivers of τCH4 differences among 10 models are the flux of UV light to the troposphere (indicated by the photolysis frequency JO 1D), the mixing ratio of tropospheric ozone (O3), the abundance of nitrogen oxides (NOx ≡ NO + NO2), and details of the various chemical mechanisms that drive OH. Water vapour, carbon monoxide (CO), the ratio of NO : NOx , and formaldehyde (HCHO) explain moderate differences in τCH4 , while isoprene, methane, the photolysis frequency of NO2 by visible light (JNO2), overhead ozone column, and temperature account for little to no model variation in τCH4 . We also apply the NNs to analysis of temporal trends in OH from 1980 to 2015. All models that participated in the specified dynamics historical simulation for CCMI demonstrate a decline in τCH4 during the analysed timeframe. The significant contributors to this trend, in order of importance, are tropospheric O3, JO 1D, NOx , and H2O, with CO also causing substantial interannual variability in OH burden. Finally, the identified trends in τCH4 are compared to calculated trends in the tropospheric mean OH concentration from previous work, based on analysis of observations. The comparison reveals a robust result for the effect of rising water vapour on OH and τCH4 , imparting an increasing and decreasing trend of about 0.5 % decade−1 , respectively. The responses due to NOx , ozone column, and temperature are also in reasonably good agreement between the two studies.
</summary>
<dc:date>2020-02-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>High-Resolution OCT Reveals Age-Associated Variation in the Region Posterior to the External Limiting Membrane</title>
<link href="https://hdl.handle.net/1721.1/165302" rel="alternate"/>
<author>
<name>Jamil, Muhammad Usman</name>
</author>
<author>
<name>Won, Jungeun</name>
</author>
<author>
<name>Ploner, Stefan B</name>
</author>
<author>
<name>Marmalidou, Anna</name>
</author>
<author>
<name>Takahashi, Hiroyuki</name>
</author>
<author>
<name>Kaiser, Stephanie</name>
</author>
<author>
<name>Hwang, Yunchan</name>
</author>
<author>
<name>Abu-Qamar, Omar</name>
</author>
<author>
<name>Yaghy, Antonio</name>
</author>
<author>
<name>Witkin, Andre J</name>
</author>
<author>
<name>Zhao, Peter Y</name>
</author>
<author>
<name>Desai, Shilpa</name>
</author>
<author>
<name>Duker, Jay S</name>
</author>
<author>
<name>Maier, Andreas</name>
</author>
<author>
<name>Fujimoto, James G</name>
</author>
<author>
<name>Waheed, Nadia K</name>
</author>
<id>https://hdl.handle.net/1721.1/165302</id>
<updated>2026-04-24T03:14:41Z</updated>
<published>2025-01-15T00:00:00Z</published>
<summary type="text">High-Resolution OCT Reveals Age-Associated Variation in the Region Posterior to the External Limiting Membrane
Jamil, Muhammad Usman; Won, Jungeun; Ploner, Stefan B; Marmalidou, Anna; Takahashi, Hiroyuki; Kaiser, Stephanie; Hwang, Yunchan; Abu-Qamar, Omar; Yaghy, Antonio; Witkin, Andre J; Zhao, Peter Y; Desai, Shilpa; Duker, Jay S; Maier, Andreas; Fujimoto, James G; Waheed, Nadia K
Purpose: To evaluate visibility of a sub-band posterior to the external limiting membrane (ELM) and assess its age-associated variation.&#13;
Methods: In a retrospective cross-sectional study, normal eyes were imaged using a high-resolution spectral-domain optical coherence tomography (SD-OCT) prototype (2.7-µm axial resolution). Volume fusion of six sequential scans (each 500 × 500 A-scans over 6 mm × 6 mm) was performed in the motion correction and volume reconstruction in OCT (MoReOCT) framework to enhance feature visibility in OCT. The subjects were divided into three groups: young (21-40 years old), middle (41-60 years old), and older (&gt;60 years old). Three expert graders assessed the visibility of the sub-band on B-scans, and its A-scan intensity relative to ELM intensity (peak intensity ratio) was measured.&#13;
Results: Forty-four eyes of 44 subjects were imaged. The sub-band, tentatively attributed to the photoreceptor myoid, can be visualized under high-resolution OCT. The B-scan gradings showed that sub-band visibility increased with age (visible in 16.7%, 47.2%, and 66.7% of the young, middle, and older age groups, respectively). The gradings were statistically different among age groups at 1 mm and 2 mm nasal and 1 mm and 2 mm temporal (P &lt; 0.04) from the foveal center. Similarly, the mean peak intensity ratios of the sub-band to the ELM were 71.6%, 77.5%, and 85.2% in the young, middle, and older age groups, respectively, and were positively correlated with age at 1 mm temporal (P = 0.012) and 2 mm temporal (P &lt; 0.001).&#13;
Conclusions: High-resolution OCT, combined with advanced volume fusion, enables visualization of the photoreceptor myoid and investigation of its age-associated variations.&#13;
Translational Relevance: Investigating the sub-band can advance our understanding of photoreceptors and their association with aging and disease pathogenesis.
</summary>
<dc:date>2025-01-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Topographic Measurement of the Subretinal Pigment Epithelium Space in Normal Aging and Age-Related Macular Degeneration Using High-Resolution OCT</title>
<link href="https://hdl.handle.net/1721.1/165301" rel="alternate"/>
<author>
<name>Won, Jungeun</name>
</author>
<author>
<name>Takahashi, Hiroyuki</name>
</author>
<author>
<name>Ploner, Stefan B</name>
</author>
<author>
<name>Karbole, Wenke</name>
</author>
<author>
<name>Abu-Qamar, Omar</name>
</author>
<author>
<name>Yaghy, Antonio</name>
</author>
<author>
<name>Marmalidou, Anna</name>
</author>
<author>
<name>Kaiser, Stephanie</name>
</author>
<author>
<name>Hwang, Yunchan</name>
</author>
<author>
<name>Lin, Junhong</name>
</author>
<author>
<name>Witkin, Andre</name>
</author>
<author>
<name>Desai, Shilpa</name>
</author>
<author>
<name>Baumal, Caroline R</name>
</author>
<author>
<name>Maier, Andreas</name>
</author>
<author>
<name>Curcio, Christine A</name>
</author>
<author>
<name>Waheed, Nadia K</name>
</author>
<author>
<name>Fujimoto, James G</name>
</author>
<id>https://hdl.handle.net/1721.1/165301</id>
<updated>2026-04-24T03:14:31Z</updated>
<published>2024-08-09T00:00:00Z</published>
<summary type="text">Topographic Measurement of the Subretinal Pigment Epithelium Space in Normal Aging and Age-Related Macular Degeneration Using High-Resolution OCT
Won, Jungeun; Takahashi, Hiroyuki; Ploner, Stefan B; Karbole, Wenke; Abu-Qamar, Omar; Yaghy, Antonio; Marmalidou, Anna; Kaiser, Stephanie; Hwang, Yunchan; Lin, Junhong; Witkin, Andre; Desai, Shilpa; Baumal, Caroline R; Maier, Andreas; Curcio, Christine A; Waheed, Nadia K; Fujimoto, James G
Purpose: A micrometer scale hyporeflective band within the retinal pigment epithelium basal lamina - Bruch's membrane complex (RPE-BL-BrM) was topographically measured in aging and age-related macular degeneration (AMD).&#13;
Methods: In a prospective cross-sectional study, 90 normal eyes from 76 subjects (range = 23-90 years) and 53 dry AMD eyes from 47 subjects (range = 62-91 years) were enrolled. Isotropic volume raster scans over 6 mm × 6 mm (500 × 500 A-scans) were acquired using a high-resolution (2.7 µm axial resolution) spectral-domain optical coherence tomography (SD-OCT) prototype instrument. Six consecutive optical coherence tomography (OCT) volumes were computationally motion-corrected and fused to improve feature visibility. A boundary regression neural network was developed to measure hyporeflective band thickness. Topographic dependence was evaluated over a 6-mm-diameter Early Treatment Diabetic Retinopathy Study (ETDRS) grid.&#13;
Results: The hyporeflective band thickness map (median of 4.3 µm and 7.8 µm in normal and AMD eyes, respectively) is thicker below and radially symmetric around the fovea. In normal eyes, age-associated differences occur within 0.7 to 2.3 mm from the foveal center (P &lt; 0.05). In AMD eyes, the hyporeflective band is hypothesized to be basal laminar deposits (BLamDs) and is thicker within the 3-mm ETDRS circle (P &lt; 0.0002) compared with normal eyes. The inner ring is the most sensitive location to detect age versus AMD-associated changes within the RPE-BL-BrM. AMD eyes with subretinal drusenoid deposits (SDDs) have a significantly thicker hyporeflective band (P &lt; 0.001) than those without SDDs.&#13;
Conclusions: The hyporeflective band is a quantifiable biomarker which differentiates AMD from aging. Longitudinal studies are warranted. The hyporeflective band may be a useful biomarker for risk stratification and disease progression.
</summary>
<dc:date>2024-08-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Assessment of Choriocapillaris Flow Prior to Nascent Geographic Atrophy Development Using Optical Coherence Tomography Angiography</title>
<link href="https://hdl.handle.net/1721.1/165300" rel="alternate"/>
<author>
<name>Greig, Eugenia Custo</name>
</author>
<author>
<name>Moult, Eric M</name>
</author>
<author>
<name>Despotovic, Ivana N</name>
</author>
<author>
<name>Hodgson, Lauren AB</name>
</author>
<author>
<name>Pramil, Varsha</name>
</author>
<author>
<name>Fujimoto, James G</name>
</author>
<author>
<name>Waheed, Nadia K</name>
</author>
<author>
<name>Guymer, Robyn H</name>
</author>
<author>
<name>Wu, Zhichao</name>
</author>
<id>https://hdl.handle.net/1721.1/165300</id>
<updated>2026-04-24T03:14:52Z</updated>
<published>2024-01-18T00:00:00Z</published>
<summary type="text">Assessment of Choriocapillaris Flow Prior to Nascent Geographic Atrophy Development Using Optical Coherence Tomography Angiography
Greig, Eugenia Custo; Moult, Eric M; Despotovic, Ivana N; Hodgson, Lauren AB; Pramil, Varsha; Fujimoto, James G; Waheed, Nadia K; Guymer, Robyn H; Wu, Zhichao
Purpose: To assess the relationship between choriocapillaris (CC) loss and the development of nascent geographic atrophy (nGA) using optical coherence tomography angiography (OCTA) imaging.&#13;
Methods: In total, 105 from 62 participants with bilateral large drusen, without late age-related macular degeneration (AMD) or nGA at baseline, were included in this prospective, longitudinal, observational study. Participants underwent swept-source OCTA imaging at 6-month intervals. CC flow deficit percentage (FD%) and drusen volume measurements were determined for the visit prior to nGA development or the second-to-last visit if nGA did not develop. Global and local analyses, the latter based on analyses within superpixels (120 × 120-µm regions), were performed to examine the association between CC FD% and future nGA development.&#13;
Results: A total of 15 (14%) eyes from 12 (19%) participants developed nGA. There was no significant difference in global CC FD% at the visit prior to nGA development between eyes that developed nGA and those that did not (P = 0.399). In contrast, CC FD% was significantly higher in superpixels that subsequently developed nGA compared to those that did not (P &lt; 0.001), and a model utilizing CC FD% was significantly better at predicting foci of future nGA development at the superpixel level than a model using drusen volume alone (P ≤ 0.040).&#13;
Conclusions: This study showed that significant impairments in CC blood flow could be detected locally prior to the development of nGA. These findings add to our understanding of the pathophysiologic changes that occur with atrophy development in AMD.
</summary>
<dc:date>2024-01-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Stochastic Network Utility Maximization in Strategic Queueing Systems: A Game-Theoretic Approach</title>
<link href="https://hdl.handle.net/1721.1/165299" rel="alternate"/>
<author>
<name>Nguyen, Quang Minh</name>
</author>
<author>
<name>Berry, Randall</name>
</author>
<author>
<name>Modiano, Eytan</name>
</author>
<id>https://hdl.handle.net/1721.1/165299</id>
<updated>2026-04-24T03:14:54Z</updated>
<published>2026-03-26T00:00:00Z</published>
<summary type="text">Stochastic Network Utility Maximization in Strategic Queueing Systems: A Game-Theoretic Approach
Nguyen, Quang Minh; Berry, Randall; Modiano, Eytan
Stochastic Network Utility Maximization (NUM) has been a  dominant framework for many queueing network resource allocation and control problems. Its original model seeks to optimize  social welfare, which usually takes the form of the sum of local utilities of participating entities. However, such a centralized utility maximization approach  is  unsuitable for many modern multi-agent systems, in which each agent may selfishly optimize its local utility without regard to the overall utility. In this paper, we formulate the stochastic NUM problem in strategic queueing systems as a repeated game with queue stability constraints. In particular, the agents repeatedly make  decisions to satisfy both their local constraints and global  constraints, shared among them, while maintaining queue stability. The goal is to design a policy that constitutes a generalized Nash equilibrium (GNE) for the game. &#13;
&#13;
We first derive the fluid model characterization of the strategic queueing NUM problem via a static one-shot game formulation. This characterization motivates a primal-dual algorithm  that constitutes an approximate GNE by ensuring last-iterate convergence to a solution of the regularized static one-shot game. However, similar to primal-dual methods developed for the classical NUM problem, this approach does not leverage real-time queue lengths in decision making, leading to suboptimal queueing delay in practice, and has no explicit performance guarantees. To this end, we propose the Strategic Drift-plus-Penalty (SDP) algorithm and show that it constitutes an $\varepsilon$-GNE  and  has a uniformly bounded expected queue length of order $O\big(\frac{1}{\varepsilon^3} \big)$ for any $\varepsilon &gt; 0$. Under an additional mild assumption that holds for a wide class of problems, we show that  our algorithms achieve  long-term average social welfare arbitrarily close to that of a welfare-maximizing GNE policy.  Simulations validate our theory and demonstrate the favorable performance of our algorithms.
</summary>
<dc:date>2026-03-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Pop-Up Encounters with Spot: Shaping Public Perceptions of Robots through Hands-On Experience</title>
<link href="https://hdl.handle.net/1721.1/165298" rel="alternate"/>
<author>
<name>Park, Hae Won</name>
</author>
<author>
<name>Van de Zande, Georgia D.</name>
</author>
<author>
<name>Zhang, Xiajie</name>
</author>
<author>
<name>Wendell, Dawn</name>
</author>
<author>
<name>Hodgins, Jessica</name>
</author>
<id>https://hdl.handle.net/1721.1/165298</id>
<updated>2026-05-08T03:14:01Z</updated>
<published>2026-03-16T00:00:00Z</published>
<summary type="text">Pop-Up Encounters with Spot: Shaping Public Perceptions of Robots through Hands-On Experience
Park, Hae Won; Van de Zande, Georgia D.; Zhang, Xiajie; Wendell, Dawn; Hodgins, Jessica
Public attitudes toward robots are often shaped by indirect exposure (e.g., media, staged demos), leaving open how direct, hands-on experience influences acceptance. In this study, we investigate how interacting with Boston Dynamics’ Spot, an agile, state-of-the-art quadruped robot, in a public pop-up booth affects perceptions of comfort and suitability across everyday and high-stakes environments. In a walk-up, 10-week pop-up booth, participants (N=753) completed pre–post surveys before and after driving Spot within curated Drive Scenes (Factory, Home, Hospital, Outdoor/Disaster). Measures captured comfort encountering robots and perceived suitability across Rated Contexts (RCs), affective reactions, and open-ended reflections. Hands-on control significantly increased comfort across all RCs, with the largest gains in Outdoor/Disaster, and increased perceived suitability—most in Home/Office/Hospital where baselines were lower. Improvements generalized beyond the experienced Drive Scene to other contexts. Age, gender, and prior familiarity moderated baseline levels and some changes, but hands-on exposure raised scores for all groups and attenuated several gaps. Thematic analysis showed memorable moments tied to locomotion, terrain adaptation, and expressive tilt; imagined roles consistently emphasized domestic assistance (e.g., cleaning, mobility), with entertainment/play and companionship emerging post-interaction. Together, these results demonstrate that brief, agency-granting encounters with a high-capability quadruped can broaden where people see robots as appropriate and diversify envisioned roles, offering a scalable model for public-facing HRI that fosters comfort, enthusiasm, and acceptance.
HRI ’26, Edinburgh, Scotland, UK
</summary>
<dc:date>2026-03-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Who’s the Boss? Children Negotiate Robot Control across Role and Context</title>
<link href="https://hdl.handle.net/1721.1/165297" rel="alternate"/>
<author>
<name>Pu, Isabella</name>
</author>
<author>
<name>Rogers, Kantwon</name>
</author>
<author>
<name>Dinh, Linh Dieu</name>
</author>
<author>
<name>Alghowinem, Sharifa</name>
</author>
<author>
<name>Breazeal, Cynthia</name>
</author>
<id>https://hdl.handle.net/1721.1/165297</id>
<updated>2026-04-24T03:14:28Z</updated>
<published>2026-03-16T00:00:00Z</published>
<summary type="text">Who’s the Boss? Children Negotiate Robot Control across Role and Context
Pu, Isabella; Rogers, Kantwon; Dinh, Linh Dieu; Alghowinem, Sharifa; Breazeal, Cynthia
Children regularly negotiate questions of authority and control in home and school life, but little is known about how they believe robots should fit into these dynamics. We conducted a 75-minute design session with 17 children (ages 6-9) to examine when robots should take, share, or defer control, and how expectations shift when robots are framed as teachers, classmates, or mentees. Children resisted robot control, particularly in adult-regulated domains and areas tied to personal skill or self-expression. They were more open to robot control in domains where they felt less competent, or where robots, perceived as less legitimate authorities than humans, could substitute for adult control. Role framing further shaped expectations: teacher robots were granted autonomy, classmate robots were expected to act as peers, and mentee robots were expected to defer. These findings show that children apply context- and role-sensitive rules when negotiating control with robots. We conclude with design considerations for robots in children's everyday lives that respect children's agency, calibrate autonomy by domain, and align behavior with children's context-sensitive expectations.
HRI ’26, Edinburgh, Scotland, UK
</summary>
<dc:date>2026-03-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>WiReSens Toolkit: An Open-source Platform towards Accessible Wireless Tactile Sensing</title>
<link href="https://hdl.handle.net/1721.1/165296" rel="alternate"/>
<author>
<name>Murphy, Devin</name>
</author>
<author>
<name>Zhu, Junyi</name>
</author>
<author>
<name>Gadre, Akshay</name>
</author>
<author>
<name>Torralba, Antonio</name>
</author>
<author>
<name>Liang, Paul Pu</name>
</author>
<author>
<name>Matusik, Wojciech</name>
</author>
<author>
<name>Luo, Yiyue</name>
</author>
<id>https://hdl.handle.net/1721.1/165296</id>
<updated>2026-04-24T03:15:11Z</updated>
<published>2026-03-07T00:00:00Z</published>
<summary type="text">WiReSens Toolkit: An Open-source Platform towards Accessible Wireless Tactile Sensing
Murphy, Devin; Zhu, Junyi; Gadre, Akshay; Torralba, Antonio; Liang, Paul Pu; Matusik, Wojciech; Luo, Yiyue
Past research has widely explored the design and fabrication of resistive matrix-based tactile sensors for creating touch-sensitive devices. However, real-world deployment of resistive tactile sensing systems remains difficult for individuals with limited prior experience in embedded sensing due to challenges of portability, adaptivity, and efficiency. We introduce the WiReSens Toolkit, an accessible, open-source platform to bridge this gap. Central to our approach is adaptive hardware for interfacing with resistive sensors and a web-based GUI that streamlines access to advanced features for building scalable tactile sensing systems, including multi-device programming and wireless visualization across three communication protocols, autocalibration for adaptive sensitivity, and intermittent data transmission for low-power use. We validated the toolkit’s usability through a user study with 11 novice participants, who, on average, configured a tactile sensor with over 95% accuracy in under five minutes, calibrated sensors 10× faster than baseline methods, and showed improved sense-making of tactile data.
TEI ’26, Chicago, IL, USA
</summary>
<dc:date>2026-03-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>PixBric: Precision Morphological Control of Pre-Stretched Fabrics Through Tessellated Primitive Geometries</title>
<link href="https://hdl.handle.net/1721.1/165295" rel="alternate"/>
<author>
<name>Youn, Hye Jun</name>
</author>
<author>
<name>Choe, Jun Kyu</name>
</author>
<author>
<name>Ahn, SooYeon</name>
</author>
<author>
<name>Tania, Marcello</name>
</author>
<author>
<name>Sara, Serena Xin Wei</name>
</author>
<author>
<name>Ishii, Hiroshi</name>
</author>
<id>https://hdl.handle.net/1721.1/165295</id>
<updated>2026-05-08T03:13:10Z</updated>
<published>2026-03-07T00:00:00Z</published>
<summary type="text">PixBric: Precision Morphological Control of Pre-Stretched Fabrics Through Tessellated Primitive Geometries
Youn, Hye Jun; Choe, Jun Kyu; Ahn, SooYeon; Tania, Marcello; Sara, Serena Xin Wei; Ishii, Hiroshi
3D printing onto pre-stretched fabrics has emerged as a promising technique for fabricating self-shaping textiles. However, resulting morphing behaviors are often dictated by heuristics or arbitrarily selected parameters. We present PixBric, a pixel-based design framework that enables precise morphological control through tessellated primitive geometries printed onto biaxially stretched fabrics. Upon release, these units buckle into programmed 3D forms including undulations, curling, and bistable snapping. PixBric integrates parametric modeling, mechanical simulation, and empirical evaluation to map geometric parameters to deformation outcomes. We demonstrate applications spanning morphable typography, wearable rings, and reconfigurable surfaces. PixBric bridges digital simulation (tide) with the mechanical constraints of elastic substrates (tied), transforming complex material behaviors into accessible tools for learning, experimentation, and creative fabrication.
TEI ’26, Chicago, IL, USA
</summary>
<dc:date>2026-03-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Synthetic Network Data Generation for Analyst Training</title>
<link href="https://hdl.handle.net/1721.1/165294" rel="alternate"/>
<author>
<name>Smith, Liam</name>
</author>
<author>
<name>Wright, Matthew</name>
</author>
<id>https://hdl.handle.net/1721.1/165294</id>
<updated>2026-04-02T03:08:55Z</updated>
<published>2026-04-01T00:00:00Z</published>
<summary type="text">Synthetic Network Data Generation for Analyst Training
Smith, Liam; Wright, Matthew
Rapidly evolving cyber threats demand continuous,&#13;
high-fidelity training for defense analysts. However, generating&#13;
realistic network traffic datasets creates a significant barrier&#13;
to entry, often requiring extensive virtualization infrastructure,&#13;
specialized hardware, and knowledge in cyber range administration.&#13;
This paper introduces a streamlined architecture, called&#13;
Generative Packet Captures (GenCap), built upon the foundational&#13;
capabilities of the FOSR benign traffic generator and&#13;
the ID2T attack injector. By abstracting these complex tools&#13;
behind an automated orchestration layer, it enables users to&#13;
generate scenario-specific PCAP files on demand. This approach&#13;
democratizes access to training data, allowing analysts to create&#13;
rigorous network defense scenarios without the need for complex&#13;
provisioning or systems engineering knowledge.
</summary>
<dc:date>2026-04-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>ChromoLCD: LCD-based Compact Reprogrammer for On-the-fly High-Resolution Images on Photochromic Surfaces</title>
<link href="https://hdl.handle.net/1721.1/165293" rel="alternate"/>
<author>
<name>Zhu, Yunyi</name>
</author>
<author>
<name>Li, Qingyuan</name>
</author>
<author>
<name>Yan, Katherine</name>
</author>
<author>
<name>Guan, Emily</name>
</author>
<author>
<name>Luchianov, Alexandru</name>
</author>
<author>
<name>Hen, Eden</name>
</author>
<author>
<name>Mueller, Stefanie</name>
</author>
<id>https://hdl.handle.net/1721.1/165293</id>
<updated>2026-04-24T03:15:30Z</updated>
<published>2026-03-07T00:00:00Z</published>
<summary type="text">ChromoLCD: LCD-based Compact Reprogrammer for On-the-fly High-Resolution Images on Photochromic Surfaces
Zhu, Yunyi; Li, Qingyuan; Yan, Katherine; Guan, Emily; Luchianov, Alexandru; Hen, Eden; Mueller, Stefanie
Color-changing materials, such as photochromic pigments, allow objects to have reprogrammable multicolor surface images. Existing systems that reprogram these images are based on projectors and LEDs, each with advantages and limitations in device portability and image resolution. In this paper, we present ChromoLCD, a surface reprogrammer that uses a liquid crystal display (LCD) to achieve a compact handheld device without sacrificing image resolution. ChromoLCD consists of an LCD panel with a custom backlight containing R,G,B and UV LEDs, forming high-resolution light patterns with the required wavelengths. The compact form factor of ChromoLCD enables on-the-fly reprogramming of everyday surfaces. Our technical evaluation shows that ChromoLCD achieves a resolution of 25 ppi, which is 8 times better than the prior work. We demonstrate ChromoLCD with three applications, including the stamping of reprogrammable AR markers on a kitchen counter, on-the-fly designs on personal accessories, and reference pictures on a whiteboard.
TEI ’26, Chicago, IL, USA
</summary>
<dc:date>2026-03-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Natural Convection Heat Transfer from an Inclined Cylinder</title>
<link href="https://hdl.handle.net/1721.1/165292" rel="alternate"/>
<author>
<name>Jaffer, Aubrey</name>
</author>
<id>https://hdl.handle.net/1721.1/165292</id>
<updated>2026-04-02T03:07:39Z</updated>
<published>2026-03-17T00:00:00Z</published>
<summary type="text">Natural Convection Heat Transfer from an Inclined Cylinder
Jaffer, Aubrey
Based on Jaffer’s (2023) heat engine analysis of natural convection, this investigation mathematically derives a novel, comprehensive formula predicting the natural convective heat transfer from an inclined cylinder given its length, diameter, angle, and Rayleigh number and the fluid’s Prandtl number and thermal conductivity. The present formula was tested with 93 inclined cylinder measurements having length-to-diameter ratios between 1.48 and 104 in nine data-sets from three peer-reviewed studies, yielding (data-set) root-mean-squared relative error values between 1.9% and 4.7%.
</summary>
<dc:date>2026-03-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Stability and Reactivity of Cyclopentane Nucleoside Analogs in 98% w/w Sulfuric Acid</title>
<link href="https://hdl.handle.net/1721.1/165291" rel="alternate"/>
<author>
<name>Seager, Sara</name>
</author>
<author>
<name>Seager, Maxwell D.</name>
</author>
<author>
<name>Visser, Ton</name>
</author>
<author>
<name>Marinus, Nittert</name>
</author>
<author>
<name>Poizat, Mael</name>
</author>
<author>
<name>van Wiltenburg, Jim</name>
</author>
<author>
<name>Poelert, Martin</name>
</author>
<author>
<name>Petkowski, Janusz J.</name>
</author>
<id>https://hdl.handle.net/1721.1/165291</id>
<updated>2026-05-08T03:14:16Z</updated>
<published>2026-03-17T00:00:00Z</published>
<summary type="text">Stability and Reactivity of Cyclopentane Nucleoside Analogs in 98% w/w Sulfuric Acid
Seager, Sara; Seager, Maxwell D.; Visser, Ton; Marinus, Nittert; Poizat, Mael; van Wiltenburg, Jim; Poelert, Martin; Petkowski, Janusz J.
We synthesized seven carbocyclic nucleoside analogs featuring a cyclopentane ring in place of the (deoxy)ribose sugar, which serves as a linker in DNA/RNA nucleosides. We assessed the stability of cyclopentane nucleosides in 98% w/w sulfuric acid at room temperature via 1H and 13C NMR spectroscopy. We observe that adenine (A1, A4), guanine (G1) and thymine (T1) cyclopentane nucleoside analogs remain stable for at least two weeks at room temperature, with only minor (~4%) degradation in A1. In contrast, the cytosine analog (C1) rapidly degrades to release a soluble cytosine. Methyl-substituted adenine analogs mimicking polymer backbone attachments at positions prone to tertiary carbocation formation (A2, A3) prove unstable and release soluble adenine. Only the 3,3-dimethylcyclopentyl adenine analog (A4) exhibits sufficient stability. Our findings reveal that cyclopentane serves as a viable stable linker in concentrated sulfuric acid for select nucleic acid bases, provided that the backbone connections avoid tertiary carbons susceptible to carbocation-mediated cleavage. We thus identify one potential key structural feature for engineering examples of genetic-like polymers that could potentially persist in Venus’s concentrated sulfuric acid cloud environment.
</summary>
<dc:date>2026-03-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Operation of a Modular 3D-Pixelated Liquid Argon Time-Projection Chamber in a Neutrino Beam</title>
<link href="https://hdl.handle.net/1721.1/165290" rel="alternate"/>
<author>
<name>Abbaslu, S.</name>
</author>
<author>
<name>Abud, A. Abed</name>
</author>
<author>
<name>Acciarri, R.</name>
</author>
<author>
<name>Accorsi, L. P.</name>
</author>
<author>
<name>Acero, M. A.</name>
</author>
<author>
<name>Adames, M. R.</name>
</author>
<author>
<name>Adamov, G.</name>
</author>
<author>
<name>Adamowski, M.</name>
</author>
<author>
<name>Adriano, C.</name>
</author>
<author>
<name>Akbar, F.</name>
</author>
<author>
<name>Alemanno, F.</name>
</author>
<author>
<name>Alex, N. S.</name>
</author>
<author>
<name>Allison, K.</name>
</author>
<author>
<name>Alrashed, M.</name>
</author>
<author>
<name>Alton, A.</name>
</author>
<author>
<name>Alvarez, R.</name>
</author>
<author>
<name>Alves, T.</name>
</author>
<author>
<name>Aman, A.</name>
</author>
<author>
<name>Amar, H.</name>
</author>
<author>
<name>Amedo, P.</name>
</author>
<id>https://hdl.handle.net/1721.1/165290</id>
<updated>2026-05-08T03:12:43Z</updated>
<published>2026-03-17T00:00:00Z</published>
<summary type="text">Operation of a Modular 3D-Pixelated Liquid Argon Time-Projection Chamber in a Neutrino Beam
Abbaslu, S.; Abud, A. Abed; Acciarri, R.; Accorsi, L. P.; Acero, M. A.; Adames, M. R.; Adamov, G.; Adamowski, M.; Adriano, C.; Akbar, F.; Alemanno, F.; Alex, N. S.; Allison, K.; Alrashed, M.; Alton, A.; Alvarez, R.; Alves, T.; Aman, A.; Amar, H.; Amedo, P.
The 2x2 Demonstrator, a prototype for the Deep Underground Neutrino Experiment (DUNE) liquid argon (LAr) Near Detector, was exposed to the Neutrinos from the Main Injector (NuMI) neutrino beam at Fermi National Accelerator Laboratory (Fermilab). This detector is a prototype of a new modular design for a liquid argon time-projection chamber (LArTPC), comprising a two-by-two array of four modules, each further segmented into two optically isolated LArTPCs. The 2x2 Demonstrator features a number of pioneering technologies, including a low-profile resistive field shell to establish drift fields, native 3D ionization pixelated imaging, and a high-coverage dielectric light readout system. The 2.4-tonne active mass detector is flanked upstream and downstream by supplemental solid-scintillator tracking planes, repurposed from the MINERvA experiment, which track ionizing particles exiting the argon volume. The antineutrino beam data collected by the detector over a 4.5 day period in 2024 include over 30,000 neutrino interactions in the LAr active volume—the first neutrino interactions reported by a DUNE detector prototype. During its physics-quality run, the 2x2 Demonstrator operated at a nominal drift field of 500 V/cm and maintained good LAr purity, with a stable electron lifetime of approximately 1.25 ms. This paper describes the detector and supporting systems, summarizes the installation and commissioning, and presents the initial validation of collected NuMI beam and off-beam self-triggers. In addition, it highlights observed interactions in the detector volume, including candidate muon antineutrino events.
</summary>
<dc:date>2026-03-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>15.S21 Nuts and Bolts of Business Plans, January IAP 2014</title>
<link href="https://hdl.handle.net/1721.1/165289" rel="alternate"/>
<author>
<name>Hadzima, Joseph</name>
</author>
<id>https://hdl.handle.net/1721.1/165289</id>
<updated>2026-03-31T19:01:36Z</updated>
<published>2014-01-01T00:00:00Z</published>
<summary type="text">15.S21 Nuts and Bolts of Business Plans, January IAP 2014
Hadzima, Joseph
The nuts and bolts of preparing a New Venture Plan and launching the venture will be explored in this twenty-fifth annual course offering. The course is open to members of the MIT Community and to others interested in entrepreneurship. It is particularly recommended for persons who are interested in starting or are involved in a new business or venture. Because some of the speakers will be judges of the MIT $100K Entrepreneurship Competition, persons who are planning to enter the Competition should find the course particularly useful. In the past approximately 50% of the class has been from the Engineering / Science / Architecture Schools and 50% from the Sloan School of Management.&#13;
&#13;
The course is offered during the Independent Activities Period (IAP), which is a special 4-week term at MIT that runs from the first week of January until the end of the month.
</summary>
<dc:date>2014-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Technology-Policy Handbook for Trans-Atlantic Nuclear Maritime Corridors: Ports, Infrastructure, and Safety</title>
<link href="https://hdl.handle.net/1721.1/164311.2" rel="alternate"/>
<author>
<name>Valiaveedu, Anthony</name>
</author>
<author>
<name>Edmonds, Nat</name>
</author>
<id>https://hdl.handle.net/1721.1/164311.2</id>
<updated>2026-04-07T03:06:12Z</updated>
<published>2025-12-12T00:00:00Z</published>
<summary type="text">Technology-Policy Handbook for Trans-Atlantic Nuclear Maritime Corridors: Ports, Infrastructure, and Safety
Valiaveedu, Anthony; Edmonds, Nat
On September 18, 2025, the United States and the United Kingdom published a Memorandum of Understanding (MoU) on scientific and technological advancement. This new partnership focuses on understanding and deploying disruptive technologies in Artificial Intelligence, quantum, and civil nuclear energy. Less highlighted was a single sentence within the MoU outlining efforts to "explore opportunities" for establishing a "maritime shipping corridor" between the US and UK. So far, research on civilian nuclear ships has generally prioritized ship design and operation analysis. This paper will instead analyze port, regulatory, and infrastructural issues within this space and provide a path forward for technology policy solutions supporting systems safety.
</summary>
<dc:date>2025-12-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Accelerated Full Waveform Inversion by Deep Compressed Learning</title>
<link href="https://hdl.handle.net/1721.1/165288" rel="alternate"/>
<author>
<name>Gelboim, Maayan</name>
</author>
<author>
<name>Adler, Amir</name>
</author>
<author>
<name>Araya-Polo, Mauricio</name>
</author>
<id>https://hdl.handle.net/1721.1/165288</id>
<updated>2026-04-24T03:14:50Z</updated>
<published>2026-03-13T00:00:00Z</published>
<summary type="text">Accelerated Full Waveform Inversion by Deep Compressed Learning
Gelboim, Maayan; Adler, Amir; Araya-Polo, Mauricio
We propose and test a method to reduce the dimensionality of Full Waveform Inversion (FWI) inputs as a computational cost mitigation approach. Given modern seismic acquisition systems, the data (as an input for FWI) required for an industrial-strength case is in the teraflop level of storage; therefore, solving complex subsurface cases or exploring multiple scenarios with FWI becomes prohibitive. The proposed method utilizes a deep neural network with a binarized sensing layer that learns by compressed learning seismic acquisition layouts from a large corpus of subsurface models. Thus, given a large seismic data set to invert, the trained network selects a smaller subset of the data, then by using representation learning, an autoencoder computes latent representations of the shot gathers, followed by K-means clustering of the latent representations to further select the most relevant shot gathers for FWI. This approach can effectively be seen as a hierarchical selection. The proposed approach consistently outperforms random data sampling, even when utilizing only 10% of the data for 2D FWI, and these results pave the way to accelerating FWI in large scale 3D inversion.
</summary>
<dc:date>2026-03-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Time-Symmetric and Retrocausal Resolution of the EPR Paradox</title>
<link href="https://hdl.handle.net/1721.1/165287" rel="alternate"/>
<author>
<name>Heaney, Michael B.</name>
</author>
<id>https://hdl.handle.net/1721.1/165287</id>
<updated>2026-04-23T03:15:39Z</updated>
<published>2026-03-12T00:00:00Z</published>
<summary type="text">A Time-Symmetric and Retrocausal Resolution of the EPR Paradox
Heaney, Michael B.
The Copenhagen Interpretation of quantum mechanics explains the Einstein, Podolsky, and Rosen (EPR) experiments with “spooky action at a distance” and nonlocal wavefunction collapse. A time-symmetric and retrocausal interpretation of quantum mechanics explains the same experiments without spooky action at a distance or nonlocal wavefunction collapse. An experiment that can distinguish between the Copenhagen and Time-Symmetric Interpretations is described.
</summary>
<dc:date>2026-03-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ionic Liquid Biospheres</title>
<link href="https://hdl.handle.net/1721.1/165286" rel="alternate"/>
<author>
<name>Seager, Sara</name>
</author>
<author>
<name>Bains, William</name>
</author>
<author>
<name>Iakubivskyi, Iaroslav</name>
</author>
<author>
<name>Agrawal, Rachana</name>
</author>
<author>
<name>Jenkins, John</name>
</author>
<author>
<name>Shinde, Pranav</name>
</author>
<author>
<name>Petkowski, Janusz J.</name>
</author>
<id>https://hdl.handle.net/1721.1/165286</id>
<updated>2026-04-01T03:08:00Z</updated>
<published>2026-03-03T00:00:00Z</published>
<summary type="text">Ionic Liquid Biospheres
Seager, Sara; Bains, William; Iakubivskyi, Iaroslav; Agrawal, Rachana; Jenkins, John; Shinde, Pranav; Petkowski, Janusz J.
Liquid is a fundamental requirement for life as we understand it, but whether that liquid has to be water is not known. We propose the hypothesis that ionic liquids (ILs) and deep eutectic solvents (DES) constitute a class of non-aqueous planetary liquids capable of persisting on a wide range of bodies where stable liquid water cannot exist. This hypothesis is motivated by key physical properties of ILs and DES. Many exhibit vapor pressures orders of magnitude lower than that of water and remain liquid across exceptionally wide temperature ranges, from cryogenic to well above terrestrial temperatures. These properties permit stable liquids to exist where liquid water would rapidly evaporate or freeze and outside of bulk phases as persistent microscale reservoirs&amp;mdash;such as thin films and pore-filling droplets. In other words, ILs and DES can persist in environments without requiring oceans, thick atmospheres, or narrowly regulated climate conditions. We further hypothesize that ILs and DES could act as solvents for non-Earth-like life, based on their polar nature and the demonstrated stability and functionality of proteins and other biomolecules in ionic liquids. More speculatively, our hypothesis extends to the idea that ILs and DES could enable prebiotic chemistry by providing long-lived, protective liquid environments for complex organic molecules on bodies such as comets and asteroids, where liquid water is absent. Additionally, based on the occurrence of DES-like mixtures as protective intracellular liquids in desiccation-tolerant plants, we propose that ILs and DES might be solvents that life elsewhere purposefully evolves. We review protein and other biomolecule studies in ILs and DES and outline planetary environments in which ILs and DES might occur by discussing available anions and cations. We present strategies to advance the IL/DES solvent hypothesis using laboratory studies, computational chemistry, planetary missions, analysis of existing spectroscopic datasets, and modeling of liquid microniches and chemical survival on small bodies.
</summary>
<dc:date>2026-03-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Nomenclatural Recommendations for Genera Assigned to the Arcobacteraceae from the Subcommittee on the Taxonomy of Campylobacter and Related Bacteria</title>
<link href="https://hdl.handle.net/1721.1/165285" rel="alternate"/>
<author>
<name>On, Stephen L. W.</name>
</author>
<author>
<name>Figueras, Maria J.</name>
</author>
<author>
<name>Fox, James G.</name>
</author>
<author>
<name>Houf, Kurt</name>
</author>
<author>
<name>Mégraud, Francis</name>
</author>
<author>
<name>Miller, William G.</name>
</author>
<author>
<name>Stolz, John</name>
</author>
<author>
<name>Takai, Ken</name>
</author>
<author>
<name>Vandamme, Peter</name>
</author>
<id>https://hdl.handle.net/1721.1/165285</id>
<updated>2026-05-08T03:12:50Z</updated>
<published>2026-02-02T00:00:00Z</published>
<summary type="text">Nomenclatural Recommendations for Genera Assigned to the Arcobacteraceae from the Subcommittee on the Taxonomy of Campylobacter and Related Bacteria
On, Stephen L. W.; Figueras, Maria J.; Fox, James G.; Houf, Kurt; Mégraud, Francis; Miller, William G.; Stolz, John; Takai, Ken; Vandamme, Peter
The taxonomy of the genus Arcobacter has been subject to substantive turmoil in recent years following a proposal to subdivide the genus into six genera. This proposal has been challenged by a number of multidisciplinary studies employing phenotypic, genomic, and phylogenetic analyses. Following several discussions among members of the International Committee on Systematics of Prokaryotes (ICSP) subcommittee on the taxonomy of Campylobacter and related bacteria, this group now unanimously recommends the use of the genus term Arcobacter to refer to these species.
</summary>
<dc:date>2026-02-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Local Geographic Atrophy Growth Rates Not Influenced by Close Proximity to Non-Exudative Type 1 Macular Neovascularization</title>
<link href="https://hdl.handle.net/1721.1/165284" rel="alternate"/>
<author>
<name>Trivizki, Omer</name>
</author>
<author>
<name>Moult, Eric M</name>
</author>
<author>
<name>Wang, Liang</name>
</author>
<author>
<name>Iyer, Prashanth</name>
</author>
<author>
<name>Shi, Yingying</name>
</author>
<author>
<name>Gregori, Giovanni</name>
</author>
<author>
<name>Feuer, William</name>
</author>
<author>
<name>Fujimoto, James G</name>
</author>
<author>
<name>Rosenfeld, Philip J</name>
</author>
<id>https://hdl.handle.net/1721.1/165284</id>
<updated>2026-04-23T03:15:27Z</updated>
<published>2022-01-14T00:00:00Z</published>
<summary type="text">Local Geographic Atrophy Growth Rates Not Influenced by Close Proximity to Non-Exudative Type 1 Macular Neovascularization
Trivizki, Omer; Moult, Eric M; Wang, Liang; Iyer, Prashanth; Shi, Yingying; Gregori, Giovanni; Feuer, William; Fujimoto, James G; Rosenfeld, Philip J
Purpose: The local growth rates of geographic atrophy (GA) adjacent to non-exudative type 1 macular neovascularization (MNV) were investigated to determine if MNV influenced GA growth.&#13;
Methods: Eyes with GA and non-exudative type 1 MNV were followed for at least 1 year. Both GA and the MNV were imaged and measured using swept-source optical coherence tomography angiography (SS-OCTA) scans. Pearson correlations were computed between local growth rates of GA, which were estimated using a biophysical GA growth model, and local distances-to-MNV. Corresponding P values for the null hypothesis of no Pearson correlation were computed using a Monte Carlo approach that adjusts for spatial autocorrelations.&#13;
Results: Nine eyes were included in this study. There were positive correlations (Pearson's r &gt; 0) between distance-to-MNV and local GA growth in eight (89%) of the eyes; however, in all but one eye (11%), correlations were relatively weak and statistically nonsignificant after Bonferroni correction (corrected P &gt; 0.05).&#13;
Conclusions: SS-OCTA imaging combined with GA growth modeling and spatial statistical analysis enabled quantitative assessment of correlations between local GA growth rates and local distances-to-MNV. Our results are not consistent with non-exudative type 1 MNV having a strong inhibitory effect on local GA growth rates.
</summary>
<dc:date>2022-01-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optical trapping of SrOH molecules for dark matter and T-violation searches</title>
<link href="https://hdl.handle.net/1721.1/165283" rel="alternate"/>
<author>
<name>Sawaoka, Hiromitsu</name>
</author>
<author>
<name>Nasir, Abdullah</name>
</author>
<author>
<name>Lunstad, Annika</name>
</author>
<author>
<name>Li, Mingda</name>
</author>
<author>
<name>Mango, Jack</name>
</author>
<author>
<name>Lasner, Zack D</name>
</author>
<author>
<name>Doyle, John M</name>
</author>
<id>https://hdl.handle.net/1721.1/165283</id>
<updated>2026-04-01T03:08:08Z</updated>
<published>2026-01-29T00:00:00Z</published>
<summary type="text">Optical trapping of SrOH molecules for dark matter and T-violation searches
Sawaoka, Hiromitsu; Nasir, Abdullah; Lunstad, Annika; Li, Mingda; Mango, Jack; Lasner, Zack D; Doyle, John M
We report an optical dipole trap of strontium monohydroxide (SrOH) with 1400(300) trapped molecules. Through optical pumping, we access vibrational states that are proposed for improved probes of the electron’s electric dipole moment (eEDM) and ultralight dark matter (UDM). For each of these states, the lifetime of trapped molecules is measured and found to be consistent with spontaneous radiative decay and blackbody excitation limits, making this platform viable for these eEDM and UDM searches.
</summary>
<dc:date>2026-01-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Drosophila Fog/Cta and T48 pathways have overlapping and distinct contributions to mesoderm invagination</title>
<link href="https://hdl.handle.net/1721.1/165282" rel="alternate"/>
<author>
<name>Horo, Uzuki</name>
</author>
<author>
<name>Clarke, D Nathaniel</name>
</author>
<author>
<name>Martin, Adam C</name>
</author>
<id>https://hdl.handle.net/1721.1/165282</id>
<updated>2026-05-08T03:12:58Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Drosophila Fog/Cta and T48 pathways have overlapping and distinct contributions to mesoderm invagination
Horo, Uzuki; Clarke, D Nathaniel; Martin, Adam C
The regulation of the cytoskeleton by multiple signaling pathways, sometimes in parallel, is a common principle of morphogenesis. A classic example of regulation by parallel pathways is Drosophila gastrulation, where the inputs from the Folded gastrulation (Fog)/Concertina (Cta) and the T48 pathways induce apical constriction and mesoderm invagination. Whether there are distinct roles for these separate pathways in regulating the complex spatial and temporal patterns of cytoskeletal activity that accompany early embryo development is still poorly understood. We investigated the roles of the Fog/Cta and T48 pathways and found that, by themselves, the Cta and T48 pathways both promote timely mesoderm invagination and apical myosin II accumulation, with Cta being required for timely cell shape change ahead of mitotic cell division. We also identified distinct functions of T48 and Cta in regulating cellularization and the uniformity of the apical myosin II network, respectively. Our results demonstrate that both redundant and distinct functions for the Fog/Cta and T48 pathways exist.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tools for live-cell imaging of cytoskeletal and nuclear behavior in the unconventional yeast, Aureobasidium pullulans</title>
<link href="https://hdl.handle.net/1721.1/165281" rel="alternate"/>
<author>
<name>Petrucco, Claudia A</name>
</author>
<author>
<name>Crocker, Alex W</name>
</author>
<author>
<name>D’Alessandro, Alec</name>
</author>
<author>
<name>Medina, Edgar M</name>
</author>
<author>
<name>Gorman, Olivia</name>
</author>
<author>
<name>McNeill, Jessica</name>
</author>
<author>
<name>Gladfelter, Amy S</name>
</author>
<author>
<name>Lew, Daniel J</name>
</author>
<id>https://hdl.handle.net/1721.1/165281</id>
<updated>2026-05-08T03:12:55Z</updated>
<published>2024-04-01T00:00:00Z</published>
<summary type="text">Tools for live-cell imaging of cytoskeletal and nuclear behavior in the unconventional yeast, Aureobasidium pullulans
Petrucco, Claudia A; Crocker, Alex W; D’Alessandro, Alec; Medina, Edgar M; Gorman, Olivia; McNeill, Jessica; Gladfelter, Amy S; Lew, Daniel J
Aureobasidium pullulans is a ubiquitous fungus with a wide variety of morphologies and growth modes including “typical” single-budding yeast, and interestingly, larger multinucleate yeast than can make multiple buds in a single cell cycle. The study of A. pullulans promises to uncover novel cell biology, but currently tools are lacking to achieve this goal. Here, we describe initial components of a cell biology toolkit for A. pullulans, which is used to express and image fluorescent probes for nuclei as well as components of the cytoskeleton. These tools allowed live-cell imaging of the multinucleate and multibudding cycles, revealing highly synchronous mitoses in multinucleate yeast that occur in a semiopen manner with an intact but permeable nuclear envelope. These findings open the door to using this ubiquitous polyextremotolerant fungus as a model for evolutionary cell biology.
</summary>
<dc:date>2024-04-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tracking the Spatio‐Temporal Evolution of Foreshocks Preceding the Mw 6.1 2009 L’Aquila Earthquake</title>
<link href="https://hdl.handle.net/1721.1/165280" rel="alternate"/>
<author>
<name>Cabrera, Leoncio</name>
</author>
<author>
<name>Poli, Piero</name>
</author>
<author>
<name>Frank, William B</name>
</author>
<id>https://hdl.handle.net/1721.1/165280</id>
<updated>2026-03-28T03:07:07Z</updated>
<published>2022-03-07T00:00:00Z</published>
<summary type="text">Tracking the Spatio‐Temporal Evolution of Foreshocks Preceding the Mw 6.1 2009 L’Aquila Earthquake
Cabrera, Leoncio; Poli, Piero; Frank, William B
How faulting processes lead to a large earthquake is a fundamental question in seismology. To better constrain this pre‐seismic stage, we create a dense seismic catalog via template matching to analyze the precursory phase of the Mw 6.1 L’Aquila earthquake that occurred in central Italy in 2009. We estimate several physical parameters in time, such as the coefficient of variation, the seismic moment release, the effective stress drop, and analyze spatio‐temporal patterns to study the evolution of the sequence and the earthquake interactions. We observe that the precursory phase experiences multiple accelerations of the seismicity rate that we divide into two main sequences with different signatures and features: the first part exhibits weak earthquake interactions, quasi‐continuous moment release, slow spatial migration patterns, and a lower effective stress drop, pointing to aseismic processes. The second sequence exhibits strong temporal clustering, fast seismicity expansion, and a larger effective stress drop typical of a stress transfer process. We interpret the differences in seismicity behaviors between the two sequences as distinct physical mechanisms that are controlled by different physical properties of the fault system. We conclude that the L’Aquila earthquake is preceded by a complex preparation, made up of different physical processes over different time scales on faults with different physical properties.
</summary>
<dc:date>2022-03-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>A High‐Resolution Atlas of the Eastern Tropical Pacific Oxygen Deficient Zones</title>
<link href="https://hdl.handle.net/1721.1/165279" rel="alternate"/>
<author>
<name>Kwiecinski, Jarek V</name>
</author>
<author>
<name>Babbin, Andrew R</name>
</author>
<id>https://hdl.handle.net/1721.1/165279</id>
<updated>2026-03-28T03:07:13Z</updated>
<published>2021-12-27T00:00:00Z</published>
<summary type="text">A High‐Resolution Atlas of the Eastern Tropical Pacific Oxygen Deficient Zones
Kwiecinski, Jarek V; Babbin, Andrew R
Oxygen deficient zones (ODZs) are important biogeochemical provinces of the global oceans wherein standing dissolved oxygen concentrations decrease to nanomolar levels. Despite their confinement, these regions are disproportionally important to the ocean's role in modulating Earth's climate through the interactions between the marine nitrogen cycle and that of carbon. Moreover, the spatial domain of low oxygen regions of the ocean is predicted to change as a consequence of ocean warming, increased stratification, and changes in circulation and productivity. However, the expanse of the modern ODZs is poorly resolved due to a dearth of direct sampling compounded with errors that arise in the processing and gridding of the sparse measurements that do exist. Here, we take a novel approach to map the horizontal and vertical extent of the two major ODZs of the eastern tropical Pacific via analysis of meter-scale resolution electrode sensors from both ship casts and Argo profiles, rather than from discretized bottle measurements. The resulting three-dimensional data product is based on a compendium of nearly 15 million measurements taken across three decades and provides the precise locations of low oxygen water, elucidating the ODZs' three-dimensional structures. It can be utilized by researchers to validate models, plan cruise occupations, and as a comparison for future change. Calculations made with this high-resolution atlas also provide the volumes, layers of maximal areal extent, and other descriptive statistics for both Pacific ODZs. Finally, the atlas reveals fine-scale features of oxygenated water mass intrusions and regional differences across these anoxic zones.
</summary>
<dc:date>2021-12-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Orbital‐ and Millennial‐Scale Variability in Northwest African Dust Emissions Over the Past 67,000 years</title>
<link href="https://hdl.handle.net/1721.1/165278" rel="alternate"/>
<author>
<name>Kinsley, Christopher W</name>
</author>
<author>
<name>Bradtmiller, Louisa I</name>
</author>
<author>
<name>McGee, David</name>
</author>
<author>
<name>Galgay, Michael</name>
</author>
<author>
<name>Stuut, Jan‐Berend</name>
</author>
<author>
<name>Tjallingii, Rik</name>
</author>
<author>
<name>Winckler, Gisela</name>
</author>
<author>
<name>deMenocal, Peter B</name>
</author>
<id>https://hdl.handle.net/1721.1/165278</id>
<updated>2026-03-28T03:07:12Z</updated>
<published>2021-12-07T00:00:00Z</published>
<summary type="text">Orbital‐ and Millennial‐Scale Variability in Northwest African Dust Emissions Over the Past 67,000 years
Kinsley, Christopher W; Bradtmiller, Louisa I; McGee, David; Galgay, Michael; Stuut, Jan‐Berend; Tjallingii, Rik; Winckler, Gisela; deMenocal, Peter B
Reconstructions of aeolian dust flux to West African margin sediments can be used to explore changing atmospheric circulation and hydroclimate over North Africa on millennial to orbital timescales. Here, we extend West African margin dust flux records back to 37 ka in a transect of sites from 19° to 27°N, and back to 67 ka at Ocean Drilling Program (ODP) Hole 658C, in order to explore the interplay of orbital and high-latitude forcings on North African climate and make quantitative estimates of dust flux during the core of the Last Glacial Maximum (LGM). The ODP 658C record shows a Green Sahara interval from 60 to 50 ka during a time of high Northern Hemisphere summer insolation, with dust fluxes similar to levels during the early Holocene African Humid Period, and an abrupt peak in flux during Heinrich event 5a (H5a). Dust fluxes increase from 50 to 35 ka while the high-latitude Northern Hemisphere cools, with peaks in dust flux associated with North Atlantic cool events. From 35 ka through the LGM dust deposition decreases in all cores, and little response is observed to low-latitude insolation changes. Dust fluxes at sites from 21° to 27°N were near late Holocene levels during the LGM time slice, suggesting a more muted LGM response than observed from mid-latitude dust sources. Records along the northwest African margin suggest important differences in wind responses during different stadials, with maximum dust flux anomalies centered south of 20°N during H1 and north of 20°N during the Younger Dryas.
</summary>
<dc:date>2021-12-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Methyl Chloroform Continues to Constrain the Hydroxyl (OH) Variability in the Troposphere</title>
<link href="https://hdl.handle.net/1721.1/165277" rel="alternate"/>
<author>
<name>Patra, PK</name>
</author>
<author>
<name>Krol, MC</name>
</author>
<author>
<name>Prinn, RG</name>
</author>
<author>
<name>Takigawa, M</name>
</author>
<author>
<name>Mühle, J</name>
</author>
<author>
<name>Montzka, SA</name>
</author>
<author>
<name>Lal, S</name>
</author>
<author>
<name>Yamashita, Y</name>
</author>
<author>
<name>Naus, S</name>
</author>
<author>
<name>Chandra, N</name>
</author>
<author>
<name>Weiss, RF</name>
</author>
<author>
<name>Krummel, PB</name>
</author>
<author>
<name>Fraser, PJ</name>
</author>
<author>
<name>O'Doherty, S</name>
</author>
<author>
<name>Elkins, JW</name>
</author>
<id>https://hdl.handle.net/1721.1/165277</id>
<updated>2026-03-28T03:07:10Z</updated>
<published>2021-02-27T00:00:00Z</published>
<summary type="text">Methyl Chloroform Continues to Constrain the Hydroxyl (OH) Variability in the Troposphere
Patra, PK; Krol, MC; Prinn, RG; Takigawa, M; Mühle, J; Montzka, SA; Lal, S; Yamashita, Y; Naus, S; Chandra, N; Weiss, RF; Krummel, PB; Fraser, PJ; O'Doherty, S; Elkins, JW
Trends and variability in tropospheric hydroxyl (OH) radicals influence budgets of many greenhouse gases, air pollutant species, and ozone depleting substances. Estimations of tropospheric OH trends and variability based on budget analysis of methyl chloroform (CH3CCl3) and process-based chemistry transport models often produce conflicting results. Here we use a previously tested transport model to simulate atmospheric CH3CCl3 for the period 1985–2018. Based on mismatches between model output and observations, we derive consistent anomalies in the inverse lifetime of CH3CCl3 (KG) using measurements from two independent observational networks (National Oceanic and Atmospheric Administration and Advanced Global Atmospheric Gases Experiment). Our method allows a separation between “physical” (transport, temperature) and “chemical” (i.e., abundance) influences on OH + CH3CCl3 reaction rate in the atmosphere. Small increases in KG due to “physical” influences are mostly driven by increases in the temperature-dependent reaction between OH and CH3CCl3 and resulted in a smoothly varying increase of 0.80% decade−1. Chemical effects on KG, linked to global changes in OH sources and sinks, show larger year-to-year variations (∼2%–3%), and have a negative correlation with the El Niño Southern Oscillation. A significant positive trend in KG can be derived after 2001, but it persists only through 2015 and only if we assume that CH3CCl3 emissions decayed more slowly over time than our best estimate suggests. If global CH3CCl3 emissions dropped below 3 Gg year−1 after 2015, recent CH3CCl3 measurements indicate that the 2015–2018 loss rate of CH3CCl3 due to reaction with OH is comparable to its value 2 decades ago.
</summary>
<dc:date>2021-02-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>InterCarb: A Community Effort to Improve Interlaboratory Standardization of the Carbonate Clumped Isotope Thermometer Using Carbonate Standards</title>
<link href="https://hdl.handle.net/1721.1/165276" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165276</id>
<updated>2026-03-28T03:07:16Z</updated>
<published>2021-04-13T00:00:00Z</published>
<summary type="text">InterCarb: A Community Effort to Improve Interlaboratory Standardization of the Carbonate Clumped Isotope Thermometer Using Carbonate Standards
Increased use and improved methodology of carbonate clumped isotope thermometry has greatly enhanced our ability to interrogate a suite of Earth-system processes. However, interlaboratory discrepancies in quantifying carbonate clumped isotope (Δ47) measurements persist, and their specific sources remain unclear. To address interlaboratory differences, we first provide consensus values from the clumped isotope community for four carbonate standards relative to heated and equilibrated gases with 1,819 individual analyses from 10 laboratories. Then we analyzed the four carbonate standards along with three additional standards, spanning a broad range of δ47 and Δ47 values, for a total of 5,329 analyses on 25 individual mass spectrometers from 22 different laboratories. Treating three of the materials as known standards and the other four as unknowns, we find that the use of carbonate reference materials is a robust method for standardization that yields interlaboratory discrepancies entirely consistent with intralaboratory analytical uncertainties. Carbonate reference materials, along with measurement and data processing practices described herein, provide the carbonate clumped isotope community with a robust approach to achieve interlaboratory agreement as we continue to use and improve this powerful geochemical tool. We propose that carbonate clumped isotope data normalized to the carbonate reference materials described in this publication should be reported as Δ47 (I-CDES) values for Intercarb-Carbon Dioxide Equilibrium Scale.
</summary>
<dc:date>2021-04-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Certifiable Cooperative Localization for Underwater Navigation</title>
<link href="https://hdl.handle.net/1721.1/165275" rel="alternate"/>
<author>
<name>Morrison, John P.</name>
</author>
<id>https://hdl.handle.net/1721.1/165275</id>
<updated>2026-03-28T03:03:41Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Certifiable Cooperative Localization for Underwater Navigation
Morrison, John P.
Accurate underwater positioning remains one of the most significant obstacles to autonomous underwater vehicle (AUV) operations. Satellite-based navigation signals are unavailable underwater, so AUVs must dead-reckon using inertial sensors, coupled with velocity or heading references. Due to random noise and variable biases in inertial sensor measurements, the AUV’s position uncertainty grows steadily over the course of the mission, but can be reduced through range measurements to fixed or mobile references. The associated range-aided simultaneous localization and mapping (SLAM) problem is particularly challenging to solve with existing optimization methods. Individual range measurements provide limited geometric constrains on vehicle position and are subject to non-linear errors due to multi-path propagation. Attempts to optimize typical range-aided SLAM cost functions often return solutions which represent local, rather than global minima, resulting in unpredictable vehicle behavior when used for closed-loop navigation. This thesis applies a recently developed certifiable optimization algorithm, Certifiably Correct Range-aided SLAM (CORA), to the problem of cooperative localization between AUVs. CORA leverages aspects of the range-aided SLAM problem structure to find solutions which can be certified to be globally optimal. This method is integrated into a novel cooperative localization scheme, in which each vehicle maintains a locally held, periodically updated copy of the centralized, multi-agent factor graph. The cooperative localization framework presented here leverages acoustic modems for both range measurement and the sharing of sub-graphs through inter-vehicle communication. This approach was validated through extensive field trials using two modular, low-cost Spurdog AUVs were equipped with WHOI Micromodem2 payloads. Results from single and multi-vehicle deployments demonstrated that CORA substantially outperforms existing solvers when faced with poor landmark initialization and reduced observability as a result of real-world communication failures. The results presented here demonstrate the added value of coupling certifiable estimation with cooperative localization for multi-AUV localization problems, particularly in challenging, GPS-denied environments.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Age Set versus Kin: Culture and Financial Ties in east Africa</title>
<link href="https://hdl.handle.net/1721.1/165274" rel="alternate"/>
<author>
<name>Moscona, Jacob</name>
</author>
<author>
<name>Seck, Awa Ambra</name>
</author>
<id>https://hdl.handle.net/1721.1/165274</id>
<updated>2026-03-28T03:07:15Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">Age Set versus Kin: Culture and Financial Ties in east Africa
Moscona, Jacob; Seck, Awa Ambra
We study how social organization shapes patterns of economic interaction and the effects of national policy, focusing on the distinction between age-based and kin-based groups in sub-Saharan Africa. Motivated by ethnographic accounts suggesting that this distinction affects redistribution, we analyze a cash transfer program in Kenya and find that in age-based societies there are consumption spillovers within the age cohort, but not the extended family, while in kin-based societies we find the opposite. Next, we document that social structure shapes the impact of policy by showing that Uganda’s pension program had positive effects on child nutrition only in kin-based societies. (JEL H23, I12, I38, J13, O15, Z13).
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Social Media and Mental Health</title>
<link href="https://hdl.handle.net/1721.1/165273" rel="alternate"/>
<author>
<name>Braghieri, Luca</name>
</author>
<author>
<name>Levy, Ro’ee</name>
</author>
<author>
<name>Makarin, Alexey</name>
</author>
<id>https://hdl.handle.net/1721.1/165273</id>
<updated>2026-03-27T07:23:38Z</updated>
<published>2022-11-01T00:00:00Z</published>
<summary type="text">Social Media and Mental Health
Braghieri, Luca; Levy, Ro’ee; Makarin, Alexey
We provide quasi-experimental estimates of the impact of social media on mental health by leveraging a unique natural experiment: the staggered introduction of Facebook across US colleges. Our analysis couples data on student mental health around the years of Facebook’s expansion with a generalized difference-in-differences empirical strategy. We find that the rollout of Facebook at a college had a negative impact on student mental health. It also increased the likelihood with which students reported experiencing impairments to academic performance due to poor mental health. Additional evidence on mechanisms suggests the results are due to Facebook fostering unfavorable social comparisons. (JEL D91, I12, I23, L82)
</summary>
<dc:date>2022-11-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Is Journalistic Truth Dead? Measuring How Informed Voters Are about Political News</title>
<link href="https://hdl.handle.net/1721.1/165272" rel="alternate"/>
<author>
<name>Angelucci, Charles</name>
</author>
<author>
<name>Prat, Andrea</name>
</author>
<id>https://hdl.handle.net/1721.1/165272</id>
<updated>2026-03-27T07:23:39Z</updated>
<published>2024-04-01T00:00:00Z</published>
<summary type="text">Is Journalistic Truth Dead? Measuring How Informed Voters Are about Political News
Angelucci, Charles; Prat, Andrea
To investigate general patterns in news information in the United States, we combine a protocol for identifying major political news stories, 11 monthly surveys with 15,000 participants, and a model of news discernment. When confronted with a true and a fake news story, 47 percent of subjects confidently choose the true story, 3 percent confidently choose the fake story, and the remaining half are uncertain. Socioeconomic differences are associated with large variations in the probability of selecting the true news story. Partisan congruence between an individual and a news story matters, but its impact is up to an order of magnitude smaller. (JEL D72, D83, L82).
</summary>
<dc:date>2024-04-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>How Merchant Towns Shaped Parliaments: From the Norman Conquest of England to the Great Reform Act</title>
<link href="https://hdl.handle.net/1721.1/165271" rel="alternate"/>
<author>
<name>Angelucci, Charles</name>
</author>
<author>
<name>Meraglia, Simone</name>
</author>
<author>
<name>Voigtländer, Nico</name>
</author>
<id>https://hdl.handle.net/1721.1/165271</id>
<updated>2026-03-27T07:23:34Z</updated>
<published>2022-10-01T00:00:00Z</published>
<summary type="text">How Merchant Towns Shaped Parliaments: From the Norman Conquest of England to the Great Reform Act
Angelucci, Charles; Meraglia, Simone; Voigtländer, Nico
We study the emergence of urban self-governance in the late medieval period. We focus on England after the Norman Conquest of 1066, building a novel comprehensive dataset of 554 medieval towns. During the Commercial Revolution (twelfth to thirteenth centuries), many merchant towns obtained Farm Grants: the right of self-governed tax collection and law enforcement. Self-governance, in turn, was a stepping stone for parliamentary representation: Farm Grant towns were much more likely to be summoned directly to the medieval English Parliament than otherwise similar towns. We also show that self-governed towns strengthened the role of Parliament and shaped national institutions over the subsequent centuries. (JEL D02, D72, D73, K11, K34, N43, N93).
</summary>
<dc:date>2022-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shock response of periodic interpenetrating phase composites</title>
<link href="https://hdl.handle.net/1721.1/165270" rel="alternate"/>
<author>
<name>Taylor, Spencer V</name>
</author>
<author>
<name>Gonzales, Manny</name>
</author>
<author>
<name>Cordero, Zachary C</name>
</author>
<id>https://hdl.handle.net/1721.1/165270</id>
<updated>2026-03-27T07:23:37Z</updated>
<published>2022-11-22T00:00:00Z</published>
<summary type="text">Shock response of periodic interpenetrating phase composites
Taylor, Spencer V; Gonzales, Manny; Cordero, Zachary C
In this work, we examine the macroscale and fine-scale shock responses of interpenetrating phase composites comprising a body-centered cubic steel lattice embedded in an aluminum matrix. Through plate impact simulations, we find that the complex mesoscale geometry reduces shock velocity relative to monolithic constituents, slowing and spreading the shock front via reflection and redirection. The periodicity of the mesoscale composite geometry is also reflected by quasi-steady-wave behavior. On the fine-scale, we can predict several aspects of the oscillatory pressure and longitudinal velocity responses by tracking internal wave reflections. We also observe that the post-shock maximum temperature increases with structural openness and temperature hotspots form at interfaces parallel to the shock direction. The findings in this work provide novel structure–property linkages in the dynamic response of architectured interpenetrating phase composites.
</summary>
<dc:date>2022-11-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>ℏ2 expansion of the transmission probability through a barrier</title>
<link href="https://hdl.handle.net/1721.1/165269" rel="alternate"/>
<author>
<name>Pollak, Eli</name>
</author>
<author>
<name>Cao, Jianshu</name>
</author>
<id>https://hdl.handle.net/1721.1/165269</id>
<updated>2026-03-27T07:23:42Z</updated>
<published>2022-08-19T00:00:00Z</published>
<summary type="text">ℏ2 expansion of the transmission probability through a barrier
Pollak, Eli; Cao, Jianshu
Ninety years ago, Wigner derived the leading order expansion term in ℏ2 for the tunneling rate through a symmetric barrier. His derivation included two contributions: one came from the parabolic barrier, but a second term involved the fourth-order derivative of the potential at the barrier top. He left us with a challenge, which is answered in this paper, to derive the same but for an asymmetric barrier. A crucial element of the derivation is obtaining the ℏ2 expansion term for the projection operator, which appears in the flux-side expression for the rate. It is also reassuring that an analytical calculation of semiclassical transition state theory (TST) reproduces the anharmonic corrections to the leading order of ℏ2. The efficacy of the resulting expression is demonstrated for an Eckart barrier, leading to the conclusion that especially when considering heavy atom tunneling, one should use the expansion derived in this paper, rather than the parabolic barrier approximation. The rate expression derived here reveals how the classical TST limit is approached as a function of ℏ and, thus, provides critical insights to understand the validity of popular approximate theories, such as the classical Wigner, centroid molecular dynamics, and ring polymer molecular dynamics methods.
</summary>
<dc:date>2022-08-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Nonlinear exceptional-point lasing with ab initio Maxwell– Bloch theory</title>
<link href="https://hdl.handle.net/1721.1/165268" rel="alternate"/>
<author>
<name>Benzaouia, Mohammed</name>
</author>
<author>
<name>Stone, AD</name>
</author>
<author>
<name>Johnson, Steven G</name>
</author>
<id>https://hdl.handle.net/1721.1/165268</id>
<updated>2026-03-27T07:23:22Z</updated>
<published>2022-12-15T00:00:00Z</published>
<summary type="text">Nonlinear exceptional-point lasing with ab initio Maxwell– Bloch theory
Benzaouia, Mohammed; Stone, AD; Johnson, Steven G
We present a general analysis for finding and characterizing nonlinear exceptional point (EP) lasers above threshold using steady-state ab initio Maxwell–Bloch equations. For a system of coupled slabs, we show that a nonlinear EP is obtained for a given ratio between the external pumps in each resonator and that it is associated with a kink in the output power and lasing frequency, confirming coupled-mode theory predictions. Through numerical linear stability analysis, we confirm that the EP laser can be stable for a large enough inversion relaxation rate. We further show that the EP laser can be characterized by scattering a weak signal off the lasing cavity so that the scattering frequency spectrum exhibits a quartic divergence. Our approach can be applied to arbitrary scatterers with multi-level gain media.
</summary>
<dc:date>2022-12-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>The impact of semiconductor surface states on vacuum field emission</title>
<link href="https://hdl.handle.net/1721.1/165267" rel="alternate"/>
<author>
<name>Kim, Taeyoung</name>
</author>
<author>
<name>Joishi, Chandan</name>
</author>
<author>
<name>Shih, Pao-Chuan</name>
</author>
<author>
<name>Palacios, Tomás</name>
</author>
<author>
<name>Rajan, Siddharth</name>
</author>
<id>https://hdl.handle.net/1721.1/165267</id>
<updated>2026-03-27T07:23:40Z</updated>
<published>2022-10-26T00:00:00Z</published>
<summary type="text">The impact of semiconductor surface states on vacuum field emission
Kim, Taeyoung; Joishi, Chandan; Shih, Pao-Chuan; Palacios, Tomás; Rajan, Siddharth
This work presents a theoretical analysis of the impact of surface states on vacuum field emission currents in semiconductors. In wide and ultra-wide bandgap semiconductors such as GaN and AlGaN, low electron affinity has been proposed as a benefit for field emission into vacuum. However, in these materials, the surface Fermi level at the surface is pinned well below the conduction band, and the surface depletion barriers due to the surface Fermi level pinning can be comparable to or higher than the electron affinity. Therefore, analysis of field emission requires consideration of not only the vacuum potential barrier set by electron affinity, but also the depletion region near the semiconductor surface. In this paper, we develop analytical models to predict field emission currents with careful consideration of the impact of surface states on the energy band alignment. The results are used to provide guidelines for design of field emitters that could benefit from the low electron affinity of semiconductors such as Al(Ga)N.
</summary>
<dc:date>2022-10-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>A robust computational approach to Lees–Dorodnitsyn laminar hypersonic boundary layers with temperature-dependent properties</title>
<link href="https://hdl.handle.net/1721.1/165266" rel="alternate"/>
<author>
<name>Onyeador, CN</name>
</author>
<author>
<name>Hodge, A</name>
</author>
<author>
<name>Harris, W</name>
</author>
<id>https://hdl.handle.net/1721.1/165266</id>
<updated>2026-03-27T07:23:35Z</updated>
<published>2022-10-03T00:00:00Z</published>
<summary type="text">A robust computational approach to Lees–Dorodnitsyn laminar hypersonic boundary layers with temperature-dependent properties
Onyeador, CN; Hodge, A; Harris, W
The Lees–Dorodnitsyn (L–D) boundary layer equations for two-dimensional, non-reactive, laminar, hypersonic, boundary layer flows, and an assumption of an isentropic external flow are examined. They are applied to various geometries for which the Thin Shear Layer assumptions are valid. This study expands on previous work to develop a novel and robust methodology for computing high-temperature hypersonic flows using a uniform and compact computational stencil implemented through a computational tool, the Bulk-property Boundary Layer (BuBL) solver. In particular, we explore the impact of treating high-temperature effects present in hypersonic flows, namely, treating air as a thermally perfect gas with temperature-variable properties. The ability to solve these flows computationally using second-order finite difference methods is evaluated as are various models for viscosity, Prandtl number, and specific heat. The methodology for solving the external flow properties in the transformed L–D computational domain is also discussed. It is shown that the L–D equations evaluated using the “box” computational stencil are an effective means for evaluating laminar hypersonic boundary layer flows. Solutions for displacement and momentum thicknesses, skin friction, and Stanton number variations are obtained as a function of Prandtl number, specific heat model, and Mach number. Verification and validation measures are performed for the code. Excellent agreement is found in comparisons between BuBL and other computational fluid dynamics and experimental results, thus demonstrating the utility of the proposed methodology.
</summary>
<dc:date>2022-10-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Plasmas for in situ resource utilization on Mars: Fuels, life support, and agriculture</title>
<link href="https://hdl.handle.net/1721.1/165265" rel="alternate"/>
<author>
<name>Guerra, V</name>
</author>
<author>
<name>Silva, T</name>
</author>
<author>
<name>Pinhão, N</name>
</author>
<author>
<name>Guaitella, O</name>
</author>
<author>
<name>Guerra-Garcia, C</name>
</author>
<author>
<name>Peeters, FJJ</name>
</author>
<author>
<name>Tsampas, MN</name>
</author>
<author>
<name>van de Sanden, MCM</name>
</author>
<id>https://hdl.handle.net/1721.1/165265</id>
<updated>2026-03-27T07:23:31Z</updated>
<published>2022-08-16T00:00:00Z</published>
<summary type="text">Plasmas for in situ resource utilization on Mars: Fuels, life support, and agriculture
Guerra, V; Silva, T; Pinhão, N; Guaitella, O; Guerra-Garcia, C; Peeters, FJJ; Tsampas, MN; van de Sanden, MCM
This work discusses the potential of combining non-thermal plasmas and conducting membranes for in situ resource utilization (ISRU) on Mars. By converting different molecules directly from the Martian atmosphere, plasmas can create the necessary feed-stock and base chemicals for processing fuels, breathing oxygen, building materials, and fertilizers. Different plasma sources operate according to different principles and are associated with distinct dominant physicochemical mechanisms. This diversity allows exploring different energy transfer pathways leading to CO2 dissociation, including direct electron-impact processes, plasma chemistry mediated by vibrationally and electronically excited states, and thermally driven dissociation. The coupling of plasmas with membranes is still a technology under development, but a synergistic effect between plasma decomposition and oxygen permeation across conducting membranes is anticipated. The emerging technology is versatile, scalable, and has the potential to deliver high rates of production of molecules per kilogram of instrumentation sent to space. Therefore, it will likely play a very relevant role in future ISRU strategies.
</summary>
<dc:date>2022-08-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bridging the gap between H- and J-aggregates: Classification and supramolecular tunability for excitonic band structures in two-dimensional molecular aggregates</title>
<link href="https://hdl.handle.net/1721.1/165264" rel="alternate"/>
<author>
<name>Deshmukh, Arundhati P</name>
</author>
<author>
<name>Geue, Niklas</name>
</author>
<author>
<name>Bradbury, Nadine C</name>
</author>
<author>
<name>Atallah, Timothy L</name>
</author>
<author>
<name>Chuang, Chern</name>
</author>
<author>
<name>Pengshung, Monica</name>
</author>
<author>
<name>Cao, Jianshu</name>
</author>
<author>
<name>Sletten, Ellen M</name>
</author>
<author>
<name>Neuhauser, Daniel</name>
</author>
<author>
<name>Caram, Justin R</name>
</author>
<id>https://hdl.handle.net/1721.1/165264</id>
<updated>2026-03-27T07:23:33Z</updated>
<published>2022-06-23T00:00:00Z</published>
<summary type="text">Bridging the gap between H- and J-aggregates: Classification and supramolecular tunability for excitonic band structures in two-dimensional molecular aggregates
Deshmukh, Arundhati P; Geue, Niklas; Bradbury, Nadine C; Atallah, Timothy L; Chuang, Chern; Pengshung, Monica; Cao, Jianshu; Sletten, Ellen M; Neuhauser, Daniel; Caram, Justin R
Molecular aggregates with long-range excitonic couplings have drastically different photophysical properties compared to their monomer counterparts. From Kasha's model for one-dimensional systems, positive or negative excitonic couplings lead to blue or red-shifted optical spectra with respect to the monomers, labeled H-and J-aggregates, respectively. The overall excitonic couplings in higher dimensional systems are much more complicated and cannot be simply classified from their spectral shifts alone. Here, we provide a unified classification for extended 2D aggregates using temperature dependent peak shifts, thermal broadening, and quantum yields. We discuss the examples of six 2D aggregates with J-like absorption spectra but quite drastic changes in quantum yields and superradiance. We find the origin of the differences is, in fact, a different excitonic band structure where the bright state is lower energy than the monomer but still away from the band edge. We call this an “I-aggregate.” Our results provide a description of the complex excitonic behaviors that cannot be explained solely on Kasha's model. Furthermore, such properties can be tuned with the packing geometries within the aggregates providing supramolecular pathways for controlling them. This will allow for precise optimizations of aggregate properties in their applications across the areas of optoelectronics, photonics, excitonic energy transfer, and shortwave infrared technologies.
</summary>
<dc:date>2022-06-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design and construction of a compact, high-repetition-rate ultrafast electron diffraction instrument</title>
<link href="https://hdl.handle.net/1721.1/165263" rel="alternate"/>
<author>
<name>Freelon, Byron</name>
</author>
<author>
<name>Rohwer, Timm</name>
</author>
<author>
<name>Zong, Alfred</name>
</author>
<author>
<name>Kogar, Anshul</name>
</author>
<author>
<name>Zhou, Hengyun</name>
</author>
<author>
<name>Wong, Liang Jie</name>
</author>
<author>
<name>Ergeçen, Emre</name>
</author>
<author>
<name>Gedik, Nuh</name>
</author>
<id>https://hdl.handle.net/1721.1/165263</id>
<updated>2026-03-27T07:23:29Z</updated>
<published>2023-05-30T00:00:00Z</published>
<summary type="text">Design and construction of a compact, high-repetition-rate ultrafast electron diffraction instrument
Freelon, Byron; Rohwer, Timm; Zong, Alfred; Kogar, Anshul; Zhou, Hengyun; Wong, Liang Jie; Ergeçen, Emre; Gedik, Nuh
We present the design and performance of a compact ultrafast electron diffraction instrument. The diffractometer provides a means of examining time-resolved ultrafast dynamical properties of solids. The system’s utilization is discussed in terms of instrument parameters and diffraction data from selected condensed matter samples. The difractometer’s performance is highlighted in terms of detection sensitivity, instrumental temporal resolution, and the electron beam transverse coherence length. Following specific details of the construction, we present a practical discussion of parameters such as repetition rate and provide advice on general construction approaches for laboratory-based, keV ultrafast electron diffractometers. In addition, design guidance for constructing a compact electron gun source that is well-suited for studying diffraction from hard condensed matter is given. A unique data acquisition scheme, utilizing high laser repetition rates, is presented.
</summary>
<dc:date>2023-05-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>"POOR ECONOMICS" Creating Markets: BOU needs POOR SOFTWARE (for BOU BAZAR transactions)</title>
<link href="https://hdl.handle.net/1721.1/165262" rel="alternate"/>
<author>
<name>Datta, Shoumen</name>
</author>
<id>https://hdl.handle.net/1721.1/165262</id>
<updated>2026-05-03T19:06:40Z</updated>
<published>2026-03-26T00:00:00Z</published>
<summary type="text">"POOR ECONOMICS" Creating Markets: BOU needs POOR SOFTWARE (for BOU BAZAR transactions)
Datta, Shoumen
Hiding in plain sight is the immense demand for "poor software" from billions of potential impecunious users in nations where "poor economics" is not just the weather of the day but the climate of the century. Unbeknownst to many in the affluent world, billions of users (BOU) who are perhaps capable of paying only pennies (PAPPU - pay a penny per use) are in need of "poor" software for daily (hourly) transactions related to FEWSH (food, energy, water, sanitation, healthcare) marketplaces (BAZAR).
Even the ecclesiastical apparat will be made inconsequential for any intervention if the potential for escalation between the "haves" (1%) and the "have-nots" (99%) may reach eschatological dimensions. There may be a potential bridge over the chasm which separates billions from the billionaires. BOU could be that bridge. Billions of users (BOU) are creating demand for mobile software systems to transact their daily needs. BOU is driven by demographics (~6.5 billion poor people) in Asia and Africa. BOU is characteristic of less affluent nations and it is not usually a part of our discussion, yet this unmet demand is as real as their (and our) daily need for FEWSH (food, energy, water, sanitation, health and wellness). Software innovation in material management systems (SIMMS) may be able to capture transactions in the FEWSH verticals and monetize the system through PAPPU. This article explores ideas with respect to SIMMS helping BOU based on principles of economics and the practice of ethical profitability (however oxymoronic it may sound, ethical profitability may be that metaphorical fulcrum between need and greed).
</summary>
<dc:date>2026-03-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>EXPANSE: A time-of-flight EXPanded Angle Neutron Spin Echo spectrometer at the Second Target Station of the Spallation Neutron Source</title>
<link href="https://hdl.handle.net/1721.1/165261" rel="alternate"/>
<author>
<name>Do, Changwoo</name>
</author>
<author>
<name>Ashkar, Rana</name>
</author>
<author>
<name>Boone, Cristina</name>
</author>
<author>
<name>Chen, Wei-Ren</name>
</author>
<author>
<name>Ehlers, Georg</name>
</author>
<author>
<name>Falus, Peter</name>
</author>
<author>
<name>Faraone, Antonio</name>
</author>
<author>
<name>Gardner, Jason S</name>
</author>
<author>
<name>Graves, Van</name>
</author>
<author>
<name>Huegle, Thomas</name>
</author>
<author>
<name>Katsumata, Reika</name>
</author>
<author>
<name>Kent, Darian</name>
</author>
<author>
<name>Lin, Jiao YY</name>
</author>
<author>
<name>McHargue, Bill</name>
</author>
<author>
<name>Olsen, Bradley</name>
</author>
<author>
<name>Wang, Yangyang</name>
</author>
<author>
<name>Wilson, Danielle</name>
</author>
<author>
<name>Z, Y</name>
</author>
<id>https://hdl.handle.net/1721.1/165261</id>
<updated>2026-03-26T03:07:32Z</updated>
<published>2022-07-11T00:00:00Z</published>
<summary type="text">EXPANSE: A time-of-flight EXPanded Angle Neutron Spin Echo spectrometer at the Second Target Station of the Spallation Neutron Source
Do, Changwoo; Ashkar, Rana; Boone, Cristina; Chen, Wei-Ren; Ehlers, Georg; Falus, Peter; Faraone, Antonio; Gardner, Jason S; Graves, Van; Huegle, Thomas; Katsumata, Reika; Kent, Darian; Lin, Jiao YY; McHargue, Bill; Olsen, Bradley; Wang, Yangyang; Wilson, Danielle; Z, Y
EXPANSE, an EXPanded Angle Neutron Spin Echo instrument, has been proposed and selected as one of the first suite of instruments to be built at the Second Target Station of the Spallation Neutron Source at the Oak Ridge National Laboratory. This instrument is designed to address scientific problems that involve high-energy resolution (neV–μeV) of dynamic processes in a wide range of materials. The wide-angle detector banks of EXPANSE provide coverage of nearly two orders of magnitude in scattering wavenumbers, and the wide wavelength band affords approximately four orders of magnitude in Fourier times. This instrument will offer unique capabilities that are not available in the currently existing neutron scattering instruments in the United States. Specifically, EXPANSE will enable direct measurements of slow dynamics in the time domain over wide Q-ranges simultaneously and will also enable time-resolved spectroscopic studies. The instrument is expected to contribute to a diverse range of science areas, including soft matter, polymers, biological materials, liquids and glasses, energy materials, unconventional magnets, and quantum materials.
</summary>
<dc:date>2022-07-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Thermal diffusivity in ion-irradiated single-crystal iron, chromium, vanadium, and tungsten measured using transient grating spectroscopy</title>
<link href="https://hdl.handle.net/1721.1/165260" rel="alternate"/>
<author>
<name>Wylie, APC</name>
</author>
<author>
<name>Woller, KB</name>
</author>
<author>
<name>Al Dajani, SAA</name>
</author>
<author>
<name>Dacus, BR</name>
</author>
<author>
<name>Pickering, EJ</name>
</author>
<author>
<name>Preuss, M</name>
</author>
<author>
<name>Short, MP</name>
</author>
<id>https://hdl.handle.net/1721.1/165260</id>
<updated>2026-04-24T03:15:31Z</updated>
<published>2022-07-22T00:00:00Z</published>
<summary type="text">Thermal diffusivity in ion-irradiated single-crystal iron, chromium, vanadium, and tungsten measured using transient grating spectroscopy
Wylie, APC; Woller, KB; Al Dajani, SAA; Dacus, BR; Pickering, EJ; Preuss, M; Short, MP
The speed-up of radiation science development with the advent of ion-irradiation experiments has, until recently, been omitted in the post-irradiation examination technique. This paper reports the results of transient grating spectroscopy—a rapid, non-destructive, in situ photothermal surface technique—of ion-irradiated single-crystals of iron, chromium, vanadium, and tungsten at room temperature. Thermal diffusivity was used to track damage development throughout irradiation, with 5 MeV self-ion irradiated iron, chromium, and vanadium showing little to no change up to damages of the order of 1 dpa. 5 MeV Si3+-ion irradiated tungsten exhibits a reduction of thermal diffusivity from 0.78(7) to 0.29(2) cm2 s−1 with logarithmically increasing dose over a similar damage range. A comparison to literature of transient grating spectroscopy thermal diffusivity values past and present shows good agreement; radiation-induced change can be clearly distinguished from differences between mono- and poly-crystalline tungsten.
</summary>
<dc:date>2022-07-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Thickness and temperature dependence of the atomic-scale structure of SrRuO3 thin films</title>
<link href="https://hdl.handle.net/1721.1/165259" rel="alternate"/>
<author>
<name>Zhang, Xuanyi</name>
</author>
<author>
<name>Penn, Aubrey N</name>
</author>
<author>
<name>Wysocki, Lena</name>
</author>
<author>
<name>Zhang, Zhan</name>
</author>
<author>
<name>van Loosdrecht, Paul HM</name>
</author>
<author>
<name>Kornblum, Lior</name>
</author>
<author>
<name>LeBeau, James M</name>
</author>
<author>
<name>Lindfors-Vrejoiu, Ionela</name>
</author>
<author>
<name>Kumah, Divine P</name>
</author>
<id>https://hdl.handle.net/1721.1/165259</id>
<updated>2026-05-08T03:12:28Z</updated>
<published>2022-05-11T00:00:00Z</published>
<summary type="text">Thickness and temperature dependence of the atomic-scale structure of SrRuO3 thin films
Zhang, Xuanyi; Penn, Aubrey N; Wysocki, Lena; Zhang, Zhan; van Loosdrecht, Paul HM; Kornblum, Lior; LeBeau, James M; Lindfors-Vrejoiu, Ionela; Kumah, Divine P
The temperature-dependent layer-resolved structure of 3 to 44 unit cell thick SrRuO3 (SRO) films grown on Nb-doped SrTiO3 substrates is investigated using a combination of high-resolution synchrotron x-ray diffraction and high-resolution electron microscopy to understand the role that structural distortions play in suppressing ferromagnetism in ultra-thin SRO films. The oxygen octahedral tilts and rotations and Sr displacements characteristic of the bulk orthorhombic phase are found to be strongly dependent on temperature, the film thickness, and the distance away from the film–substrate interface. For thicknesses, t, above the critical thickness for ferromagnetism (t &amp;amp;gt; 3 uc), the orthorhombic distortions decrease with increasing temperature above TC. Below TC, the structure of the films remains constant due to the magneto-structural coupling observed in bulk SRO. The orthorhombic distortions are found to be suppressed in the 2–3 interfacial layers due to structural coupling with the SrTiO3 substrate and correlate with the critical thickness for ferromagnetism in uncapped SRO films.
</summary>
<dc:date>2022-05-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hyperbolic phonon polaritons with positive and negative phase velocities in suspended &lt;b&gt;                     &lt;i&gt;α&lt;/i&gt;                  &lt;/b&gt;-MoO3</title>
<link href="https://hdl.handle.net/1721.1/165258" rel="alternate"/>
<author>
<name>Shen, Jialiang</name>
</author>
<author>
<name>Zheng, Zhiren</name>
</author>
<author>
<name>Dinh, Thao</name>
</author>
<author>
<name>Wang, Chuanyu</name>
</author>
<author>
<name>Chen, Mingyuan</name>
</author>
<author>
<name>Chen, Pengyu</name>
</author>
<author>
<name>Ma, Qiong</name>
</author>
<author>
<name>Jarillo-Herrero, Pablo</name>
</author>
<author>
<name>Kang, Lixing</name>
</author>
<author>
<name>Dai, Siyuan</name>
</author>
<id>https://hdl.handle.net/1721.1/165258</id>
<updated>2026-04-24T03:16:16Z</updated>
<published>2022-03-14T00:00:00Z</published>
<summary type="text">Hyperbolic phonon polaritons with positive and negative phase velocities in suspended &lt;b&gt;                     &lt;i&gt;α&lt;/i&gt;                  &lt;/b&gt;-MoO3
Shen, Jialiang; Zheng, Zhiren; Dinh, Thao; Wang, Chuanyu; Chen, Mingyuan; Chen, Pengyu; Ma, Qiong; Jarillo-Herrero, Pablo; Kang, Lixing; Dai, Siyuan
Sample suspension is a valuable method to improve the mechanical, thermal, electronic, and optical properties of low-dimensional materials. In terms of confined light-matter waves—the polaritons, sample suspension can elongate the wavelength of polaritons with a positive phase velocity. Previous work demonstrates a wavelength elongation of ∼10% for hyperbolic phonon polaritons (HPPs) in uniaxial crystals of hexagonal boron nitride (hBN). In this work, we report the alteration of HPPs in biaxial α-phase molybdenum trioxide (α-MoO3) by sample suspension. Our combined infrared nano-imaging experiments and electromagnetic theory reveal a wavelength elongation &amp;amp;gt; 60% and a propagation length increase &amp;amp;gt; 140%, due to the simultaneous wavelength elongation and dissipation elimination in the suspended specimen. We have also examined HPPs in α-MoO3 with a negative phase velocity. The sample suspension shortens the HPP wavelength and simultaneously reduces the dissipation due to the unique permittivity tensor. The HPPs with improved figures of merits in the suspended specimen may be developed for nano-polaritonic circuits, biochemical sensing, emission engineering, and energy transfer.
</summary>
<dc:date>2022-03-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hole opening from growing interfacial voids: A possible mechanism of solid state dewetting</title>
<link href="https://hdl.handle.net/1721.1/165257" rel="alternate"/>
<author>
<name>Curiotto, Stefano</name>
</author>
<author>
<name>Chame, Anna</name>
</author>
<author>
<name>Müller, Pierre</name>
</author>
<author>
<name>Thompson, Carl V</name>
</author>
<author>
<name>Pierre-Louis, Olivier</name>
</author>
<id>https://hdl.handle.net/1721.1/165257</id>
<updated>2026-05-08T03:12:49Z</updated>
<published>2022-03-03T00:00:00Z</published>
<summary type="text">Hole opening from growing interfacial voids: A possible mechanism of solid state dewetting
Curiotto, Stefano; Chame, Anna; Müller, Pierre; Thompson, Carl V; Pierre-Louis, Olivier
Vacancies at interfaces between a film and a substrate can affect material properties and could play a role in solid state dewetting. Using kinetic Monte Carlo simulations, we show that interfacial mono-vacancies diffuse and coalesce to form vacancy clusters and voids. The film/substrate excess energy ES, which is related to the apparent contact angle, controls the mechanisms of coalescence. Depending on ES, voids emerging at the film surface form a hole that can be filled by the film or can lead to dewetting of the film from the substrate.
</summary>
<dc:date>2022-03-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>2D materials-enabled optical modulators: From visible to terahertz spectral range</title>
<link href="https://hdl.handle.net/1721.1/165256" rel="alternate"/>
<author>
<name>Gan, Xuetao</name>
</author>
<author>
<name>Englund, Dirk</name>
</author>
<author>
<name>Van Thourhout, Dries</name>
</author>
<author>
<name>Zhao, Jianlin</name>
</author>
<id>https://hdl.handle.net/1721.1/165256</id>
<updated>2026-04-24T03:15:13Z</updated>
<published>2022-04-19T00:00:00Z</published>
<summary type="text">2D materials-enabled optical modulators: From visible to terahertz spectral range
Gan, Xuetao; Englund, Dirk; Van Thourhout, Dries; Zhao, Jianlin
Two-dimensional (2D) materials with layered structures have a variety of exceptional electronic and optical attributes for potentially developing basic functions of light wave technology from light-emitting to -modulating and -sensing. Here, we present state-of-the-art 2D materials-enabled optical intensity modulators according to their operation spectral ranges, which are mainly determined by the optical bandgaps of the 2D materials. Leveraging rich electronic structures from different 2D materials and the governed unique light–matter interactions, the working mechanisms and device architectures for the enabled modulators at specific wavelength ranges are discussed. For instance, the tunable excitonic effect in monolayer transition metal dichalcogenides allows the modulation of visible light. Electro-absorptive and electro-refractive graphene modulators could be operated in the telecom-band relying on their linear dispersion of the massless Dirac fermions. The bendable electronic band edge of the narrow bandgap in few-layer black phosphorus promises the modulation of mid-infrared light via the quantum-confined Franz–Keldysh or Burstein–Moss shift effect. Electrically and magnetically tunable optical conductivity in graphene also supports the realizations of terahertz modulators. While these modulators were demonstrated as proof of concept devices, part of them have great potential for future realistic applications, as discussed with their wavelength coverage, modulation depth, insertion loss, dynamic response speed, etc. Specifically, benefiting from the well-developed technologies of photonic chips and optical fibers in telecom and datacom, the 2D materials-based modulators integrated on these photonic structures are expected to find applications in fiber and chip optical communications. The free-space mid-infrared and terahertz modulators based on 2D materials can expect application in chemical bond spectroscopy, free-space communications, and environment/health sensing.
</summary>
<dc:date>2022-04-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Current-induced switching of a ferromagnetic Weyl semimetal Co2MnGa</title>
<link href="https://hdl.handle.net/1721.1/165255" rel="alternate"/>
<author>
<name>Han, Jiahao</name>
</author>
<author>
<name>McGoldrick, Brooke C</name>
</author>
<author>
<name>Chou, Chung-Tao</name>
</author>
<author>
<name>Safi, Taqiyyah S</name>
</author>
<author>
<name>Hou, Justin T</name>
</author>
<author>
<name>Liu, Luqiao</name>
</author>
<id>https://hdl.handle.net/1721.1/165255</id>
<updated>2026-03-26T03:07:18Z</updated>
<published>2021-11-24T00:00:00Z</published>
<summary type="text">Current-induced switching of a ferromagnetic Weyl semimetal Co2MnGa
Han, Jiahao; McGoldrick, Brooke C; Chou, Chung-Tao; Safi, Taqiyyah S; Hou, Justin T; Liu, Luqiao
The introduction of magnetic moments to topological materials provides rich opportunities for studying the interplay among magnetism, electron correlation, and topological orders, which can give rise to exotic magnetoelectric effects and allow one to manipulate the topological band structure via spintronic approaches. Here, we report current-induced switching in a thin film of ferromagnetic Weyl semimetal Co2MnGa with perpendicular magnetic anisotropy, via the spin–orbit torque from a neighboring heavy metal Pt. The reversal of the large anomalous Hall signal indicates an effective electrical control of the Berry curvatures associated with the Weyl nodes in the topological band structure. The efficiency of the spin–orbit torque switching is calibrated to be comparable to that in conventional ferromagnets. Given the compatibility of Co2MnGa films with various spintronic devices and techniques, our work represents an essential step toward memory and computing devices built by topological ferromagnetic materials.
</summary>
<dc:date>2021-11-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Super-resolved second harmonic generation imaging by coherent image scanning microscopy</title>
<link href="https://hdl.handle.net/1721.1/165254" rel="alternate"/>
<author>
<name>Raanan, Dekel</name>
</author>
<author>
<name>Song, Man Suk</name>
</author>
<author>
<name>Tisdale, William A</name>
</author>
<author>
<name>Oron, Dan</name>
</author>
<id>https://hdl.handle.net/1721.1/165254</id>
<updated>2026-05-08T03:14:06Z</updated>
<published>2022-02-18T00:00:00Z</published>
<summary type="text">Super-resolved second harmonic generation imaging by coherent image scanning microscopy
Raanan, Dekel; Song, Man Suk; Tisdale, William A; Oron, Dan
We extend image scanning microscopy to second harmonic generation (SHG) by extracting the complex field amplitude of the second-harmonic beam. While the theory behind coherent image scanning microscopy (ISM) is known, an experimental demonstration was not yet established. The main reason is that the naive intensity-reassignment procedure cannot be used for coherent scattering as the point spread function is now defined for the field amplitude rather than for the intensity. We use an inline interferometer to demonstrate super-resolved phase-sensitive SHG microscopy by applying the ISM reassignment machinery on the resolved field. This scheme can be easily extended to third harmonic generation and stimulated Raman microscopy schemes.
</summary>
<dc:date>2022-02-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sub-50 cm/s surface recombination velocity in InGaAsP/InP ridges</title>
<link href="https://hdl.handle.net/1721.1/165253" rel="alternate"/>
<author>
<name>Andrade, Nicolas M</name>
</author>
<author>
<name>Hooten, Sean</name>
</author>
<author>
<name>Kim, Yunjo</name>
</author>
<author>
<name>Kim, Jeehwan</name>
</author>
<author>
<name>Yablonovitch, Eli</name>
</author>
<author>
<name>Wu, Ming C</name>
</author>
<id>https://hdl.handle.net/1721.1/165253</id>
<updated>2026-03-26T03:07:22Z</updated>
<published>2021-11-08T00:00:00Z</published>
<summary type="text">Sub-50 cm/s surface recombination velocity in InGaAsP/InP ridges
Andrade, Nicolas M; Hooten, Sean; Kim, Yunjo; Kim, Jeehwan; Yablonovitch, Eli; Wu, Ming C
The III–V InP/InGaAsP/InGaAs material family is important for photonic devices due to its optical emission and absorption in the 1.55 and&#13;
1.3 lm telecommunication bands for optical interconnects. However, InGaAsP/InGaAs generally suffer from relatively high surface&#13;
recombination velocity—compared to Si [Das et al., in 2020 47th IEEE Photovoltaic Specialists Conference (PVSC) (IEEE, Calgary, AB, 2020),&#13;
pp. 1167–1170] and InP [Joyce et al., Nano Lett. 12, 5325–5330 (2012)], which reduces the efficiency and can increase the noise in&#13;
nanophotonic devices. Here, we demonstrate an efficient method to passivate the surface using a combination of sulfur-saturated ammonium&#13;
sulfide and atomic layer deposition. After annealing, the surface passivation led to a surface recombination velocity as low as 45 cm/s, corresponding to a &gt;180 increase in the photoluminesence of a nanoscale light-emitting device with 200 nm width.
</summary>
<dc:date>2021-11-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Emerging GaN technologies for power, RF, digital, and quantum computing applications: Recent advances and prospects</title>
<link href="https://hdl.handle.net/1721.1/165252" rel="alternate"/>
<author>
<name>Hoo Teo, Koon</name>
</author>
<author>
<name>Zhang, Yuhao</name>
</author>
<author>
<name>Chowdhury, Nadim</name>
</author>
<author>
<name>Rakheja, Shaloo</name>
</author>
<author>
<name>Ma, Rui</name>
</author>
<author>
<name>Xie, Qingyun</name>
</author>
<author>
<name>Yagyu, Eiji</name>
</author>
<author>
<name>Yamanaka, Koji</name>
</author>
<author>
<name>Li, Kexin</name>
</author>
<author>
<name>Palacios, Tomás</name>
</author>
<id>https://hdl.handle.net/1721.1/165252</id>
<updated>2026-05-08T03:13:27Z</updated>
<published>2021-10-29T00:00:00Z</published>
<summary type="text">Emerging GaN technologies for power, RF, digital, and quantum computing applications: Recent advances and prospects
Hoo Teo, Koon; Zhang, Yuhao; Chowdhury, Nadim; Rakheja, Shaloo; Ma, Rui; Xie, Qingyun; Yagyu, Eiji; Yamanaka, Koji; Li, Kexin; Palacios, Tomás
GaN technology is not only gaining traction in power and RF electronics but is also rapidly expanding into other application areas including digital and quantum computing electronics. This paper provides a glimpse of future GaN device technologies and advanced modeling approaches that can push the boundaries of these applications in terms of performance and reliability. While GaN power devices have recently been commercialized in the 15–900 V classes, new GaN devices are greatly desirable to explore both higher-voltage and ultra-low-voltage power applications. Moving into the RF domain, ultra-high frequency GaN devices are being used to implement digitized power amplifier circuits, and further advances using the hardware–software co-design approach can be expected. On the horizon is the GaN CMOS technology, a key missing piece to realize the full-GaN platform with integrated digital, power, and RF electronics technologies. Although currently a challenge, high-performance p-type GaN technology will be crucial to realize high-performance GaN CMOS circuits. Due to its excellent transport characteristics and ability to generate free carriers via polarization doping, GaN is expected to be an important technology for ultra-low temperature and quantum computing electronics. Finally, given the increasing cost of hardware prototyping of new devices and circuits, the use of high-fidelity device models and data-driven modeling approaches for technology-circuit co-design are projected to be the trends of the future. In this regard, physically inspired, mathematically robust, less computationally taxing, and predictive modeling approaches are indispensable. With all these and future efforts, we envision GaN to become the next Si for electronics.
</summary>
<dc:date>2021-10-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Underscreening and hidden ion structures in large scale simulations of concentrated electrolytes</title>
<link href="https://hdl.handle.net/1721.1/165251" rel="alternate"/>
<author>
<name>Krucker-Velasquez, Emily</name>
</author>
<author>
<name>Swan, James W</name>
</author>
<id>https://hdl.handle.net/1721.1/165251</id>
<updated>2026-05-08T03:12:09Z</updated>
<published>2021-10-01T00:00:00Z</published>
<summary type="text">Underscreening and hidden ion structures in large scale simulations of concentrated electrolytes
Krucker-Velasquez, Emily; Swan, James W
The electrostatic screening length predicted by Debye–Hückel theory decreases with increasing ionic strength, but recent experiments have found that the screening length can instead increase in concentrated electrolytes. This phenomenon, referred to as underscreening, is believed to result from ion–ion correlations and short-range forces such as excluded volume interactions among ions. We use Brownian Dynamics to simulate a version of the Restrictive Primitive Model for electrolytes over a wide range of ion concentrations, ionic strengths, and ion excluded volume radii for binary electrolytes. We measure the decay of the charge–charge correlation among ions in the bulk and compare it against scaling trends found experimentally and determined in certain weak coupling theories of ion–ion correlation. Moreover, we find that additional large scale ion structures emerge at high concentrations. In this regime, the frequency of oscillations computed from the charge–charge correlation function is not dominated by electrostatic interactions but rather by excluded volume interactions and with oscillation periods on the order of the ion diameter. We also find the nearest neighbor correlation of ions sharing the same charge transitions from negative at small concentrations to positive at high concentrations, representing the formation of small, like-charge ion clusters. We conclude that the increase in local charge density due to the formation of these clusters and the topological constraints of macroscopic charged surfaces can help explain the degree of underscreening observed experimentally.
</summary>
<dc:date>2021-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantum Chemistry Common Driver and Databases (QCDB) and Quantum Chemistry Engine (QCEngine): Automation and interoperability among computational chemistry programs</title>
<link href="https://hdl.handle.net/1721.1/165250" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165250</id>
<updated>2026-04-24T03:15:19Z</updated>
<published>2021-11-22T00:00:00Z</published>
<summary type="text">Quantum Chemistry Common Driver and Databases (QCDB) and Quantum Chemistry Engine (QCEngine): Automation and interoperability among computational chemistry programs
Community efforts in the computational molecular sciences (CMS) are evolving toward modular, open, and interoperable interfaces that work with existing community codes to provide more functionality and composability than could be achieved with a single program. The Quantum Chemistry Common Driver and Databases (QCDB) project provides such capability through an application programming interface (API) that facilitates interoperability across multiple quantum chemistry software packages. In tandem with the Molecular Sciences Software Institute and their Quantum Chemistry Archive ecosystem, the unique functionalities of several CMS programs are integrated, including CFOUR, GAMESS, NWChem, OpenMM, Psi4, Qcore, TeraChem, and Turbomole, to provide common computational functions, i.e., energy, gradient, and Hessian computations as well as molecular properties such as atomic charges and vibrational frequency analysis. Both standard users and power users benefit from adopting these APIs as they lower the language barrier of input styles and enable a standard layout of variables and data. These designs allow end-to-end interoperable programming of complex computations and provide best practices options by default.
</summary>
<dc:date>2021-11-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>A deep learning augmented genetic algorithm approach to polycrystalline 2D material fracture discovery and design</title>
<link href="https://hdl.handle.net/1721.1/165249" rel="alternate"/>
<author>
<name>Lew, Andrew J</name>
</author>
<author>
<name>Buehler, Markus J</name>
</author>
<id>https://hdl.handle.net/1721.1/165249</id>
<updated>2026-04-24T03:14:45Z</updated>
<published>2021-12-10T00:00:00Z</published>
<summary type="text">A deep learning augmented genetic algorithm approach to polycrystalline 2D material fracture discovery and design
Lew, Andrew J; Buehler, Markus J
The gestalt of computational methods including physics-based molecular dynamics simulations, data-driven machine learning (ML) models, and biologically-inspired genetic algorithms affords a powerful toolbox for tackling materials mechanism discovery and design problems. Here, we leverage these methods to investigate the complex multidimensional problem of polycrystalline 2D material fracture. We focus first on graphene and in doing so, demonstrate a practical workflow for exploring the structural dependencies of fracture energy. Despite training our ML model on exclusively single crystal fracture in increments of 10° orientations, we can identify a crack branching mechanism responsible for high bicrystal toughness centered at initial crystal orientation angles of 19° and 41°. These high peaks span only a few degrees in range and are completely overlooked by a search with stride 10°. Furthermore, we can discover qualitative physical phenomena such as collective fracture branch termination and extract quantitative trends relating angular dispersion and mis-orientation angles of crystal grains to fracture energy. None of these complex polycrystalline behaviors were presented in the training data, and the predictive power of the model ultimately allows us to expeditiously generate polycrystalline graphene structures with bespoke fracture paths, a task with great implications in industrial design applications and mechanism discovery. Furthermore, the approach is not limited to graphene specifically, as we demonstrate by retraining the model for another more complex 2D material—MoS2—and achieve polycrystalline fracture predictions of comparable accuracy.
</summary>
<dc:date>2021-12-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Estimating the task content of work: workforce design for AI-driven human-robot collaboration in intralogistics</title>
<link href="https://hdl.handle.net/1721.1/165248" rel="alternate"/>
<author>
<name>Bouquet, Pierre</name>
</author>
<author>
<name>Bagnoli, Nicolò Piergiovanni</name>
</author>
<author>
<name>Sheffi, Yossi</name>
</author>
<id>https://hdl.handle.net/1721.1/165248</id>
<updated>2026-05-08T03:14:13Z</updated>
<published>2026-03-22T00:00:00Z</published>
<summary type="text">Estimating the task content of work: workforce design for AI-driven human-robot collaboration in intralogistics
Bouquet, Pierre; Bagnoli, Nicolò Piergiovanni; Sheffi, Yossi
This paper addresses the challenge of strategic workforce planning for AI-driven human-robot collaboration (AI-HRC) in intralogistics. We ask two questions: how can task-level full-time equivalent&#13;
(FTE) estimates be constructed from existing labour statistics, and how can these estimates, combined with AI exposure metrics, inform strategic AI-HRC design and workforce planning? Drawing&#13;
on U.S. Bureau of Labor Statistics employment data, O∗NET occupational profiles, and task-level AI&#13;
exposure scores, we develop a stochastic task-time framework that decomposes occupations into&#13;
tasks and models task frequencies as probability vectors on the simplex. A covariance-completion&#13;
procedure reconstructs task covariance matrices consistent with survey standard errors, enabling&#13;
the translation of occupational data into task-level and detailed work activity (DWA)-level FTE estimates with uncertainty bounds. Applying the framework to the U.S. intralogistics workforce, we find&#13;
that approximately 370,000 FTEs (about 17% of workers) are concentrated in the top 15% most AIexposed DWAs. These results provide task-specific insight into AI-driven automation and support&#13;
scenario-based workforce planning by linking alternative AI-HRC adoption paths to task-level FTE&#13;
impacts, uncertainty bands, and upskilling priorities, thereby offering an analytical foundation for&#13;
resilient, human-centered AI-HRC systems.
</summary>
<dc:date>2026-03-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>The stress in a dispersion of mutually polarizable spheres</title>
<link href="https://hdl.handle.net/1721.1/165247" rel="alternate"/>
<author>
<name>Reed, KM</name>
</author>
<author>
<name>Swan, JW</name>
</author>
<id>https://hdl.handle.net/1721.1/165247</id>
<updated>2026-04-24T03:14:47Z</updated>
<published>2021-07-01T00:00:00Z</published>
<summary type="text">The stress in a dispersion of mutually polarizable spheres
Reed, KM; Swan, JW
Dispersions of dielectric and paramagnetic nanoparticles polarize in response to an external electric or magnetic field and can form chains or other ordered structures depending on the strength of the applied field. The mechanical properties of these materials are of interest for a variety of applications; however, computational studies in this area have so far been limited. In this work, we derive expressions for two important properties for dispersions of polarizable spherical particles with dipoles induced by a uniform external field—the isothermal stress tensor and the pressure. Numerical calculations of these quantities, evaluated using a spectrally accurate Ewald summation method, are validated using thermodynamic integration. We also compare the stress obtained using the mutual dipole model, which accounts for the mutual polarization of particles, to the stress expected from calculations using a fixed dipole model, which neglects mutual polarization. We find that as the conductivity of the particles increases relative to the surrounding medium, the fixed dipole model does not accurately describe the dipolar contribution to the stress. The thermodynamic pressure, calculated from the trace of the stress tensor, is compared to the virial expression for the pressure, which is simpler to calculate but inexact. We find that the virial pressure and the thermodynamic pressure differ, especially in suspensions with a high volume fraction of particles.
</summary>
<dc:date>2021-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wind farm yaw control set-point optimization under model parameter uncertainty</title>
<link href="https://hdl.handle.net/1721.1/165246" rel="alternate"/>
<author>
<name>Howland, Michael F</name>
</author>
<id>https://hdl.handle.net/1721.1/165246</id>
<updated>2026-04-24T03:14:29Z</updated>
<published>2021-07-21T00:00:00Z</published>
<summary type="text">Wind farm yaw control set-point optimization under model parameter uncertainty
Howland, Michael F
Wake steering, the intentional yaw misalignment of certain turbines in an array, has demonstrated potential as a wind farm control approach to increase collective power. Existing algorithms optimize the yaw misalignment angle set-points using steady-state wake models and either deterministic frameworks or optimizers that account for wind direction and yaw misalignment variability and uncertainty. Wake models rely on parameterizations of physical phenomena in the mean flow field, such as the wake spreading rate. The wake model parameters are uncertain and vary in time at a wind farm depending on the atmospheric conditions, including turbulence intensity, stability, shear, veer, and other atmospheric features. In this study, we develop a yaw set-point optimization approach that includes model parameter uncertainty in addition to wind condition variability and uncertainty. To enable computationally efficient online set-point optimization under model parameter uncertainty, a simplified, approximate parameter distribution estimation method is used. The optimization is tested in open-loop control numerical experiments using utility-scale wind farm operational data for which the set-point optimization framework with parametric uncertainty has a statistically significant impact on the wind farm power production for certain wind turbine layouts at low turbulence intensity, but the results are not significant for all layouts considered nor at higher turbulence intensity. The set-point optimizer is also tested for closed-loop wake steering control of a model wind farm in large eddy simulations of a convective atmospheric boundary layer (ABL). The yaw set-point optimization with model parameter uncertainty reduced the sensitivity of the closed-loop wake steering control to increases in the yaw controller update frequency. Increases in wind farm power production were not statistically significant due to the high ambient power variability in the turbulent, convective ABL.
</summary>
<dc:date>2021-07-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Native oxide reconstructions on AlN and GaN (0001) surfaces</title>
<link href="https://hdl.handle.net/1721.1/165245" rel="alternate"/>
<author>
<name>Mirrielees, Kelsey J</name>
</author>
<author>
<name>Dycus, J Houston</name>
</author>
<author>
<name>Baker, Jonathon N</name>
</author>
<author>
<name>Reddy, Pramod</name>
</author>
<author>
<name>Collazo, Ramón</name>
</author>
<author>
<name>Sitar, Zlatko</name>
</author>
<author>
<name>LeBeau, James M</name>
</author>
<author>
<name>Irving, Douglas L</name>
</author>
<id>https://hdl.handle.net/1721.1/165245</id>
<updated>2026-05-08T03:12:45Z</updated>
<published>2021-05-19T00:00:00Z</published>
<summary type="text">Native oxide reconstructions on AlN and GaN (0001) surfaces
Mirrielees, Kelsey J; Dycus, J Houston; Baker, Jonathon N; Reddy, Pramod; Collazo, Ramón; Sitar, Zlatko; LeBeau, James M; Irving, Douglas L
Properties of AlN/GaN surfaces are important for realizing the tunability of devices, as the presence of surface states contributes to Fermi level pinning. This pinning can influence the performance of high electron mobility transistors and is also important for passivation of the surface when developing high-power electronic devices. It is widely understood that both AlN and GaN surfaces oxidize. Since there are many possible reconstructions for each surface, it is a challenge to identify the relevant surface reconstructions in advance of a detailed simulation. Because of this, different approaches are often employed to down select initial structures to reduce the computational load. These approaches usually rely on either electron counting rules or oxide stoichiometry, as both of these models tend to lead to structures that are energetically favorable. Here we explore models from these approaches but also explore a reconstruction of the (0001) surface directly observed using scanning transmission electron microscopy with predictive density functional theory simulations. Two compositions of the observed surface reconstruction—one which obeys oxide stoichiometry and one which is cation deficient and obeys electron counting—are compared to reconstructions from the previous work. Furthermore, surface states are directly calculated using hybrid exchange-correlation functionals that correct for the underestimation of the bandgaps in AlN and GaN and improve the predicted positions of surface states within the gap. It is found that cation deficiency in the observed reconstruction yields surface states consistent with the experiment. Based on all of these results, we provide insight into the observed properties of oxidized AlGaN surfaces.
</summary>
<dc:date>2021-05-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Chemical kinetic mechanisms and scaling of two-dimensional polymers via irreversible solution-phase reactions</title>
<link href="https://hdl.handle.net/1721.1/165244" rel="alternate"/>
<author>
<name>Zhang, Ge</name>
</author>
<author>
<name>Zeng, Yuwen</name>
</author>
<author>
<name>Gordiichuk, Pavlo</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<id>https://hdl.handle.net/1721.1/165244</id>
<updated>2026-04-23T03:15:48Z</updated>
<published>2021-05-17T00:00:00Z</published>
<summary type="text">Chemical kinetic mechanisms and scaling of two-dimensional polymers via irreversible solution-phase reactions
Zhang, Ge; Zeng, Yuwen; Gordiichuk, Pavlo; Strano, Michael S
Two-dimensional (2D) polymers are extended networks of multi-functional repeating units that are covalently linked together but confined to a single plane. The past decade has witnessed a surge in interest and effort toward producing and utilizing 2D polymers. However, facile synthesis schemes suitable for mass production are yet to be realized. In addition, unifying theories to describe the 2D polymerization process, such as those for linear polymers, have not yet been established. Herein, we perform a chemical kinetic simulation to study the recent synthesis of 2D polymers in homogeneous solution with irreversible chemistry. We show that reaction sites for polymerization in 2D always scale unfavorably compared to 3D, growing as molecular weight to the 1/2 power vs 2/3 power for 3D. However, certain mechanisms can effectively suppress out-of-plane defect formation and subsequent 3D growth. We consider two such mechanisms, which we call bond-planarity and templated autocatalysis. In the first, although single bonds can easily rotate out-of-plane to render polymerization in 3D, some double-bond linkages prefer a planar configuration. In the second mechanism, stacked 2D plates may act as van der Waals templates for each other to enhance growth, which leads to an autocatalysis. When linkage reactions possess a 1000:1 selectivity (γ) for staying in plane vs rotating, solution-synthesized 2D polymers can have comparable size and yield with those synthesized from confined polymerization on a surface. Autocatalysis could achieve similar effects when self-templating accelerates 2D growth by a factor β of 106. A combined strategy relaxes the requirement of both mechanisms by over one order of magnitude. We map the dependence of molecular weight and yield for the 2D polymer on the reaction parameters, allowing experimental results to be used to estimate β and γ. Our calculations show for the first time from theory the feasibility of producing two-dimensional polymers from irreversible polymerization in solution.
</summary>
<dc:date>2021-05-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ionic thermoelectric materials for near ambient temperature energy harvesting</title>
<link href="https://hdl.handle.net/1721.1/165243" rel="alternate"/>
<author>
<name>Liu, Weishu</name>
</author>
<author>
<name>Qian, Xin</name>
</author>
<author>
<name>Han, Cheng-Gong</name>
</author>
<author>
<name>Li, Qikai</name>
</author>
<author>
<name>Chen, Gang</name>
</author>
<id>https://hdl.handle.net/1721.1/165243</id>
<updated>2026-04-14T03:39:20Z</updated>
<published>2021-01-11T00:00:00Z</published>
<summary type="text">Ionic thermoelectric materials for near ambient temperature energy harvesting
Liu, Weishu; Qian, Xin; Han, Cheng-Gong; Li, Qikai; Chen, Gang
Ionic thermoelectric (i-TE) materials, using ions as the energy carrier, can generate a voltage under a temperature difference, bearing similarities to the Seebeck effect of electrons and holes in solid-state materials. Recent experiments have demonstrated large thermopower of quasi-solid-state i-TE materials, which are attractive for harvesting ambient heat as large enough voltage can be generated under a small temperature difference to match the voltage input needs of sensors for internet-of-things applications. In this perspective article, we discuss similarities and differences of i-TE materials from electronic-based thermoelectric materials and also different i-TE thermoelectric effects including the thermodiffusion (Soret) effect and the thermogalvanic effect, in which the latter includes redox reaction entropy and the Soret effect. Strategies to improve performances of materials and devices are elaborated, together with needs for future research in understanding microscopic origins of different effects.
</summary>
<dc:date>2021-01-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ultrafast low-temperature metal–insulator interface phonon dynamics and heat transport in a Pt/Gd3Fe5O12 heterostructure</title>
<link href="https://hdl.handle.net/1721.1/165242" rel="alternate"/>
<author>
<name>Sri Gyan, Deepankar</name>
</author>
<author>
<name>Li, Ni</name>
</author>
<author>
<name>Chen, Zhantao</name>
</author>
<author>
<name>Geprägs, Stephan</name>
</author>
<author>
<name>Dietlein, Maxim</name>
</author>
<author>
<name>Gross, Rudolf</name>
</author>
<author>
<name>Sato, Takahiro</name>
</author>
<author>
<name>Sun, Yanwen</name>
</author>
<author>
<name>Hoffmann, Matthias C</name>
</author>
<author>
<name>Zhu, Diling</name>
</author>
<author>
<name>Haskel, Daniel</name>
</author>
<author>
<name>Strempfer, Jörg</name>
</author>
<author>
<name>Li, Mingda</name>
</author>
<author>
<name>Mannix, Danny</name>
</author>
<author>
<name>Evans, Paul G</name>
</author>
<id>https://hdl.handle.net/1721.1/165242</id>
<updated>2026-04-14T03:39:15Z</updated>
<published>2025-11-24T00:00:00Z</published>
<summary type="text">Ultrafast low-temperature metal–insulator interface phonon dynamics and heat transport in a Pt/Gd3Fe5O12 heterostructure
Sri Gyan, Deepankar; Li, Ni; Chen, Zhantao; Geprägs, Stephan; Dietlein, Maxim; Gross, Rudolf; Sato, Takahiro; Sun, Yanwen; Hoffmann, Matthias C; Zhu, Diling; Haskel, Daniel; Strempfer, Jörg; Li, Mingda; Mannix, Danny; Evans, Paul G
Interfacial thermal and acoustic phenomena have an important role in quantum science and technology, including in spintronic and spincaloritronic materials and devices. Simultaneous measurements of the low-temperature thermal and acoustic properties of a metal/insulator heterostructure reveal distinct dynamics in the characteristic phonon frequency ranges of acoustic and thermal transport. The measurements probed a heterostructure consisting of a thin film of Pt on the ferrimagnetic insulator gadolinium iron garnet (Gd3Fe5O12, GdIG) grown epitaxially on a gadolinium gallium garnet substrate. Ultrafast structural dynamics within the Pt layer were tracked using time-resolved ultrafast x-ray diffraction and analyzed to probe interfacial acoustic and thermal properties. The rapid heating of the Pt layer by a 400 nm wavelength femtosecond-duration optical pulse produced transient structural changes that provided the stimulus for these measurements. Rapid heating produced a broadband acoustic pulse that was partially reflected by the Pt/GdIG interface. Temporal frequencies up to 740 GHz, corresponding to angular frequencies of several THz, were detected in a wavelet analysis of the acoustic oscillations of the strain in the Pt layer. The structural results were analyzed to determine (i) the acoustic damping coefficient and phonon mean free path in Pt at frequencies of hundreds of GHz and (ii) the Grüneisen anharmonicity parameter. The thermal conductance of the Pt/GdIG interface was tracked using the slower, tens-of-picosecond-scale, dynamics of the initial cooling of the heated Pt layer. Analysis using a model based on the Boltzmann transport equation shows that the phonon transmission is lower at the phonon frequencies relevant to thermal transport than for subterahertz regime acoustics.
</summary>
<dc:date>2025-11-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Two-dimensional electron gases as non-Newtonian fluids</title>
<link href="https://hdl.handle.net/1721.1/165241" rel="alternate"/>
<author>
<name>Kryhin, Serhii</name>
</author>
<author>
<name>Levitov, Leonid</name>
</author>
<id>https://hdl.handle.net/1721.1/165241</id>
<updated>2026-04-14T03:39:18Z</updated>
<published>2023-10-30T00:00:00Z</published>
<summary type="text">Two-dimensional electron gases as non-Newtonian fluids
Kryhin, Serhii; Levitov, Leonid
Two-dimensional electron systems offer an appealing platform to explore long-lived excitations arising due to collinear carrier scattering enabled by phase-space constraints at the Fermi surface. Recently it was found that these effects can boost excitation lifetimes over the fundamental bound set by Landau’s Fermi-liquid theory by a factor as large as (TF/T)α with α≈2. Long-lived degrees of freedom possess the capability to amplify the response to weak perturbations, producing lasting collective memory effects. This leads to non-Newtonian hydrodynamics in 2D electron fluids driven by multiple viscous modes with scale-dependent viscosity. We describe these modes as Fermi surface modulations of odd parity evolving in space and time, and discuss their implications for experimental studies of electron hydrodynamics.
</summary>
<dc:date>2023-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Humpback whale (Megaptera novaeangliae) breathing sound characteristics from simultaneous above and underwater measurements</title>
<link href="https://hdl.handle.net/1721.1/165240" rel="alternate"/>
<author>
<name>Radermacher, Max K</name>
</author>
<author>
<name>Schinault, Matthew E</name>
</author>
<author>
<name>Seri, Sai Geetha</name>
</author>
<author>
<name>Mohebbi-Kalkhoran, Hamed</name>
</author>
<author>
<name>Makris, Nicholas C</name>
</author>
<author>
<name>Ratilal, Purnima</name>
</author>
<id>https://hdl.handle.net/1721.1/165240</id>
<updated>2026-04-14T03:39:18Z</updated>
<published>2025-04-01T00:00:00Z</published>
<summary type="text">Humpback whale (Megaptera novaeangliae) breathing sound characteristics from simultaneous above and underwater measurements
Radermacher, Max K; Schinault, Matthew E; Seri, Sai Geetha; Mohebbi-Kalkhoran, Hamed; Makris, Nicholas C; Ratilal, Purnima
Humpback whale breathing-related sounds were recorded on elements of a coherent hydrophone array subaperture deployed vertically at the Great South Channel on the US Northeastern continental shelf in Fall 2021, where half of the hydrophones were in-air and the rest submerged underwater. In-air hydrophones recorded breathing sounds with approximately 2.5 s duration, but smaller bandwidths compared to underwater hydrophones where signal energies extended beyond 50 kHz, and a mean underwater source level of 161 ± 4 dB re 1 μPa at 1 m, based on measurements at 22.9 m. The underwater recorded humpback whale breathing sound spectra displayed a broadband dip centered at 15.7 kHz, with approximately 400 Hz half-power bandwidth, likely caused by attenuation from propagation through pulsating air bubbles. The air bubble radius for natural frequency of oscillations at 15.7 kHz is estimated to be 0.205–0.21 mm. These bubbles are capable of removing energy from the forward propagated humpback breathing sounds via resonance absorption most pronounced at and near bubble natural oscillation frequency. Humpback whale distances from the vertically deployed hydrophones are estimated and tracked by matching the curved nonlinear travel-time wavefront of its breathing sounds, since the whale was in the near-field of the subarray.
</summary>
<dc:date>2025-04-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Estimation of the spatial variability of the New England Mud Patch geoacoustic properties using a distributed array of hydrophones and deep learning</title>
<link href="https://hdl.handle.net/1721.1/165239" rel="alternate"/>
<author>
<name>Vardi, Ariel</name>
</author>
<author>
<name>Dahl, Peter H</name>
</author>
<author>
<name>Dall'Osto, David</name>
</author>
<author>
<name>Knobles, David</name>
</author>
<author>
<name>Wilson, Preston</name>
</author>
<author>
<name>Leonard, John</name>
</author>
<author>
<name>Bonnel, Julien</name>
</author>
<id>https://hdl.handle.net/1721.1/165239</id>
<updated>2026-04-14T03:39:17Z</updated>
<published>2024-12-06T00:00:00Z</published>
<summary type="text">Estimation of the spatial variability of the New England Mud Patch geoacoustic properties using a distributed array of hydrophones and deep learning
Vardi, Ariel; Dahl, Peter H; Dall'Osto, David; Knobles, David; Wilson, Preston; Leonard, John; Bonnel, Julien
This article presents a spatial environmental inversion scheme using broadband impulse signals with deep learning (DL) to model a single spatially-varying sediment layer over a fixed basement. The method is applied to data from the Seabed Characterization Experiment 2022 (SBCEX22) in the New England Mud-Patch (NEMP). Signal Underwater Sound (SUS) explosive charges generated impulsive signals recorded by a distributed array of bottom-moored hydrophones. The inversion scheme is first validated on a range-dependent synthetic test set simulating SBCEX22 conditions, then applied to experimental data to predict the lateral spatial structure of sediment sound speed and its ratio with the interfacial water sound speed. Traditional geoacoustic inversion requires significant computational resources. Here, a neural network enables rapid single-signal inversion, allowing the processing of 1836 signals along 722 tracks. The method is applied to both synthetic and experimental data. Results from experimental data suggest an increase in both absolute compressional sound speed and sound speed ratio from southwest to northeast in the NEMP, consistent with published coring surveys and geoacoustic inversion results. This approach demonstrates the potential of DL for efficient spatial geoacoustic inversion in shallow water environments.
</summary>
<dc:date>2024-12-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>The JIBO Kids Corpus: A speech dataset of child-robot interactions in a classroom environment</title>
<link href="https://hdl.handle.net/1721.1/165238" rel="alternate"/>
<author>
<name>Shankar, Natarajan Balaji</name>
</author>
<author>
<name>Afshan, Amber</name>
</author>
<author>
<name>Johnson, Alexander</name>
</author>
<author>
<name>Mahapatra, Aurosweta</name>
</author>
<author>
<name>Martin, Alejandra</name>
</author>
<author>
<name>Ni, Haolun</name>
</author>
<author>
<name>Park, Hae Won</name>
</author>
<author>
<name>Perez, Marlen Quintero</name>
</author>
<author>
<name>Yeung, Gary</name>
</author>
<author>
<name>Bailey, Alison</name>
</author>
<author>
<name>Breazeal, Cynthia</name>
</author>
<author>
<name>Alwan, Abeer</name>
</author>
<id>https://hdl.handle.net/1721.1/165238</id>
<updated>2026-04-14T03:39:14Z</updated>
<published>2024-11-01T00:00:00Z</published>
<summary type="text">The JIBO Kids Corpus: A speech dataset of child-robot interactions in a classroom environment
Shankar, Natarajan Balaji; Afshan, Amber; Johnson, Alexander; Mahapatra, Aurosweta; Martin, Alejandra; Ni, Haolun; Park, Hae Won; Perez, Marlen Quintero; Yeung, Gary; Bailey, Alison; Breazeal, Cynthia; Alwan, Abeer
This paper describes an original dataset of children's speech, collected through the use of JIBO, a social robot. The dataset encompasses recordings from 110 children, aged 4–7 years old, who participated in a letter and digit identification task and extended oral discourse tasks requiring explanation skills, totaling 21 h of session data. Spanning a 2-year collection period, this dataset contains a longitudinal component with a subset of participants returning for repeat recordings. The dataset, with session recordings and transcriptions, is publicly available, providing researchers with a valuable resource to advance investigations into child language development.
</summary>
<dc:date>2024-11-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Range-dynamical low-rank split-step Fourier method for the parabolic wave equation</title>
<link href="https://hdl.handle.net/1721.1/165237" rel="alternate"/>
<author>
<name>Charous, Aaron</name>
</author>
<author>
<name>Lermusiaux, Pierre FJ</name>
</author>
<id>https://hdl.handle.net/1721.1/165237</id>
<updated>2026-04-14T03:39:16Z</updated>
<published>2024-10-30T00:00:00Z</published>
<summary type="text">Range-dynamical low-rank split-step Fourier method for the parabolic wave equation
Charous, Aaron; Lermusiaux, Pierre FJ
Numerical solutions to the parabolic wave equation are plagued by the curse of dimensionality coupled with the Nyquist criterion. As a remedy, a new range-dynamical low-rank split-step Fourier method is developed. The integration scheme scales sub-linearly with the number of classical degrees of freedom in the transverse directions. It is orders of magnitude faster than the classic full-rank split-step Fourier algorithm and saves copious amounts of storage space. This enables numerical solutions of the parabolic wave equation at higher frequencies and on larger domains, and simulations may be performed on laptops rather than high-performance computing clusters. Using a rank-adaptive scheme to optimize the low-rank equations further ensures the approximate solution is highly accurate and efficient. The methodology and algorithms are demonstrated on realistic high-resolution data-assimilative ocean fields in Massachusetts Bay for two three-dimensional acoustic configurations with different source locations and frequencies. The acoustic pressure, transmission loss, and phase solutions are analyzed in the two geometries with seamounts and canyons across and along Stellwagen Bank. The convergence with the rank of the subspace and the properties of the rank-adaptive scheme are demonstrated, and all results are successfully compared with those of the full-rank method when feasible.
</summary>
<dc:date>2024-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Replayed reef sounds induce settlement of Favia fragum coral larvae in aquaria and field environments</title>
<link href="https://hdl.handle.net/1721.1/165236" rel="alternate"/>
<author>
<name>Aoki, Nadège</name>
</author>
<author>
<name>Weiss, Benjamin</name>
</author>
<author>
<name>Jézéquel, Youenn</name>
</author>
<author>
<name>Apprill, Amy</name>
</author>
<author>
<name>Mooney, T Aran</name>
</author>
<id>https://hdl.handle.net/1721.1/165236</id>
<updated>2026-04-14T03:39:13Z</updated>
<published>2024-10-21T00:00:00Z</published>
<summary type="text">Replayed reef sounds induce settlement of Favia fragum coral larvae in aquaria and field environments
Aoki, Nadège; Weiss, Benjamin; Jézéquel, Youenn; Apprill, Amy; Mooney, T Aran
Acoustic cues of healthy reefs are known to support critical settlement behaviors for one reef-building coral, but acoustic responses have not been demonstrated in additional species. Settlement of Favia fragum larvae in response to replayed coral reef soundscapes were observed by exposing larvae in aquaria and reef settings to playback sound treatments for 24–72 h. Settlement increased under 24 h sound treatments in both experiments. The results add to growing knowledge that acoustically mediated settlement may be widespread among stony corals with species-specific attributes, suggesting sound could be one tool employed to rehabilitate and build resilience within imperiled reef communities.
</summary>
<dc:date>2024-10-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>A deep learning method for reflective boundary estimation</title>
<link href="https://hdl.handle.net/1721.1/165235" rel="alternate"/>
<author>
<name>Arikan, Toros</name>
</author>
<author>
<name>Weiss, Amir</name>
</author>
<author>
<name>Vishnu, Hari</name>
</author>
<author>
<name>Deane, Grant B</name>
</author>
<author>
<name>Singer, Andrew C</name>
</author>
<author>
<name>Wornell, Gregory W</name>
</author>
<id>https://hdl.handle.net/1721.1/165235</id>
<updated>2026-04-14T03:39:19Z</updated>
<published>2024-07-01T00:00:00Z</published>
<summary type="text">A deep learning method for reflective boundary estimation
Arikan, Toros; Weiss, Amir; Vishnu, Hari; Deane, Grant B; Singer, Andrew C; Wornell, Gregory W
Environment estimation is a challenging task in reverberant settings such as the underwater and indoor acoustic domains. The locations of reflective boundaries, for example, can be estimated using acoustic echoes and leveraged for subsequent, more accurate localization and mapping. Current boundary estimation methods are constrained to high signal-to-noise ratios or are customized to specific environments. Existing methods also often require a correct assignment of echoes to boundaries, which is difficult if spurious echoes are detected. To evade these limitations, a convolutional neural network (NN) method is developed for robust two-dimensional boundary estimation, given known emitter and receiver locations. A Hough transform-inspired algorithm is leveraged to transform echo times of arrival into images, which are amenable to multi-resolution regression by NNs. The same architecture is trained on transform images of different resolutions to obtain diverse NNs, deployed sequentially for increasingly refined boundary estimation. A correct echo labeling solution is not required, and the method is robust to reverberation. The proposed method is tested in simulation and for real data from a water tank, where it outperforms state-of-the-art alternatives. These results are encouraging for the future development of data-driven three-dimensional environment estimation with high practical value in underwater acoustic detection and tracking.
</summary>
<dc:date>2024-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dynamically orthogonal narrow-angle parabolic equations for stochastic underwater sound propagation. Part I: Theory and schemes</title>
<link href="https://hdl.handle.net/1721.1/165234" rel="alternate"/>
<author>
<name>Ali, Wael H</name>
</author>
<author>
<name>Lermusiaux, Pierre FJ</name>
</author>
<id>https://hdl.handle.net/1721.1/165234</id>
<updated>2026-03-21T03:07:16Z</updated>
<published>2024-01-25T00:00:00Z</published>
<summary type="text">Dynamically orthogonal narrow-angle parabolic equations for stochastic underwater sound propagation. Part I: Theory and schemes
Ali, Wael H; Lermusiaux, Pierre FJ
Robust informative acoustic predictions require precise knowledge of ocean physics, bathymetry, seabed, and acoustic parameters. However, in realistic applications, this information is uncertain due to sparse and heterogeneous measurements and complex ocean physics. Efficient techniques are thus needed to quantify these uncertainties and predict the stochastic acoustic wave fields. In this work, we derive and implement new stochastic differential equations that predict the acoustic pressure fields and their probability distributions. We start from the stochastic acoustic parabolic equation (PE) and employ the instantaneously-optimal Dynamically Orthogonal (DO) equations theory. We derive stochastic DO-PEs that dynamically reduce and march the dominant multi-dimensional uncertainties respecting the nonlinear governing equations and non-Gaussian statistics. We develop the dynamical reduced-order DO-PEs theory for the Narrow-Angle parabolic equation and implement numerical schemes for discretizing and integrating the stochastic acoustic fields.
</summary>
<dc:date>2024-01-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dynamically orthogonal narrow-angle parabolic equations for stochastic underwater sound propagation. Part II: Applications</title>
<link href="https://hdl.handle.net/1721.1/165233" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165233</id>
<updated>2026-03-21T03:07:14Z</updated>
<published>2024-01-25T00:00:00Z</published>
<summary type="text">Dynamically orthogonal narrow-angle parabolic equations for stochastic underwater sound propagation. Part II: Applications
The stochastic dynamically orthogonal (DO) narrow-angle parabolic equations (NAPEs) are exemplified and their properties and capabilities are described using three new two-dimensional stochastic range-independent and range-dependent test cases with uncertain sound speed field, bathymetry, and source location. We validate results against ground-truth deterministic analytical solutions and direct Monte Carlo (MC) predictions of acoustic pressure and transmission loss fields. We verify the stochastic convergence and computational advantages of the DO-NAPEs and discuss the differences with normal mode approaches. Results show that a single DO-NAPE simulation can accurately predict stochastic range-dependent acoustic fields and their non-Gaussian probability distributions, with computational savings of several orders of magnitude when compared to direct MC methods. With their coupling properties and their adaptation in range to the dominant uncertainties, the DO-NAPEs are shown to predict accurate statistics, from mean and variance to multiple modes and full probability distributions, and to provide excellent reconstructed realizations, from amplitudes and phases to other specific properties of complex realization fields.
</summary>
<dc:date>2024-01-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Office AI Automation using Existing DAF-Approved Software</title>
<link href="https://hdl.handle.net/1721.1/165232" rel="alternate"/>
<author>
<name>Cui, Wei</name>
</author>
<author>
<name>Kennedy, Laura</name>
</author>
<id>https://hdl.handle.net/1721.1/165232</id>
<updated>2026-03-21T03:08:21Z</updated>
<published>2026-03-20T00:00:00Z</published>
<summary type="text">Office AI Automation using Existing DAF-Approved Software
Cui, Wei; Kennedy, Laura
The Department of the Air Force (DAF) continues&#13;
to face mounting administrative workloads that hinder mission&#13;
focus and operational efficiency. Executive officers and staff&#13;
officers spend substantial time generating reports, managing&#13;
emails, routing documents, and organizing taskers across multiple&#13;
systems. This paper presents the Smart Executive Assistant, an&#13;
office AI initiative to automate repetitive administrative tasks using&#13;
existing DAF-approved technologies without a new Authority-&#13;
To-Operate (ATO). By integrating DAF 365 applications, Power&#13;
Automate, and approved large language models (LLMs) within&#13;
secure IL5 and IL6 environments, this solution seeks to reduce&#13;
time spent on low-value administrative processes by 90% while&#13;
maintaining compliance and data security.
</summary>
<dc:date>2026-03-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>AI for Scalable Defensive Cyber Log Analysis</title>
<link href="https://hdl.handle.net/1721.1/165231" rel="alternate"/>
<author>
<name>Schofield, Catherine</name>
</author>
<author>
<name>Jananthan, Hayden</name>
</author>
<author>
<name>Kepner, Jeremy</name>
</author>
<id>https://hdl.handle.net/1721.1/165231</id>
<updated>2026-03-21T03:08:17Z</updated>
<published>2026-03-20T00:00:00Z</published>
<summary type="text">AI for Scalable Defensive Cyber Log Analysis
Schofield, Catherine; Jananthan, Hayden; Kepner, Jeremy
Centralized cyber logging platforms ingest large&#13;
volumes of heterogeneous telemetry, yet high dimensionality&#13;
and query-driven workflows often limit scalable analytic insight&#13;
on these systems. This work presents an automated pipeline&#13;
for ingesting, characterizing, and analyzing large-scale hostbased&#13;
logs using sparse representations and distribution-aware&#13;
statistics. A systematic dimensional analysis reduces hundreds of&#13;
raw log fields to a small set of informative dimensions suitable&#13;
for aggregation across extended time windows. Temporal analysis&#13;
of the reduced representation reveals coordinated deviations&#13;
in activity volume and distributional behavior that are not&#13;
apparent in individual log streams. The results demonstrate that&#13;
dimensional reduction enables scalable, interpretable analysis&#13;
of enterprise cyber telemetry. Furthermore, these results were&#13;
obtained using host-based sensors designed for event-oriented&#13;
point-defense and demonstrate the feasibility of integrating such&#13;
sensors to enable long-range, long-duration area defense.
</summary>
<dc:date>2026-03-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cross-Aircraft Flight Phase Classification Using ADS-B Data and Transfer Learning</title>
<link href="https://hdl.handle.net/1721.1/165230" rel="alternate"/>
<author>
<name>Kiefer, Jacob</name>
</author>
<author>
<name>Alemany, Sheila</name>
</author>
<id>https://hdl.handle.net/1721.1/165230</id>
<updated>2026-03-21T03:08:22Z</updated>
<published>2026-03-20T00:00:00Z</published>
<summary type="text">Cross-Aircraft Flight Phase Classification Using ADS-B Data and Transfer Learning
Kiefer, Jacob; Alemany, Sheila
Flight phase identification (FPI) approaches that&#13;
apply traditional machine learning techniques are expensive to&#13;
scale, difficult to generalize across platforms, and frequently&#13;
unavailable in permissive or distributed training environments.&#13;
We propose a scalable, data-driven pipeline for automatic FPI&#13;
using open-source Automatic Dependent Surveillance-Broadcast&#13;
(ADS-B) data, with an emphasis on cross-aircraft generalization&#13;
through transfer learning. Leveraging ADS-B telemetry from&#13;
USAF Initial Flight Training aircraft, a neural network classifier&#13;
is trained on Diamond DA-20 flight data and evaluated on Texan&#13;
T-6 aircraft under zero-shot and fine-tuned transfer learning&#13;
conditions. We describe a robust ADS-B preprocessing pipeline&#13;
integrating digital elevation model (DEM) data, a data labeling&#13;
strategy using unsupervised learning, and a transfer learning&#13;
approach enabling adaptation across aircraft types with limited&#13;
labeled data. Our results demonstrate that transfer learning significantly&#13;
improves classification accuracy for flight phases with&#13;
limited data, highlighting the potential of ADS-B-based models&#13;
to support scalable, behavior-aware airspace intelligence across&#13;
heterogeneous fleets and permissive environments. This research&#13;
advances FPI capabilities for USAF training analysis and broader&#13;
operational priorities in autonomy, situational awareness, and&#13;
data-driven decision support.
</summary>
<dc:date>2026-03-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Neural Networks for Stress Intensity Factor Vertex Prediction</title>
<link href="https://hdl.handle.net/1721.1/165229" rel="alternate"/>
<author>
<name>Hokaj, Ian</name>
</author>
<author>
<name>Ghanem, Janelle</name>
</author>
<id>https://hdl.handle.net/1721.1/165229</id>
<updated>2026-03-21T03:08:24Z</updated>
<published>2026-03-20T00:00:00Z</published>
<summary type="text">Neural Networks for Stress Intensity Factor Vertex Prediction
Hokaj, Ian; Ghanem, Janelle
Structural fatigue in aging metallic aircraft is a&#13;
primary driver of sustainment costs for the U.S. Air Force,&#13;
significantly impacting fleet readiness. Fatigue life prediction tools&#13;
like AFGROW depend on interpolating between computationally&#13;
expensive stress intensity factors (K-solutions) to approximate&#13;
unknown values. However, interpolation errors in the current&#13;
approach introduce uncertainty and force overly conservative&#13;
maintenance schedules. This paper investigates the use of a&#13;
machine learning surrogate to replace AFGROW’s dimensionreduction&#13;
interpolation for the finite-width c orner-cracked hole&#13;
geometry. We developed a robust data processing pipeline for a&#13;
large FEA dataset and trained a neural network model.&#13;
Our results reveal a critical insight: the surrogate model offers&#13;
substantial performance gains over AFGROW’s interpolation&#13;
in low-data regimes, emphasizing both the potential of the&#13;
model and its sensitivity to dataset size. For the original, sparse&#13;
dataset—which is characteristic of computationally expensive&#13;
problems—the neural network significantly o utperformed the&#13;
baseline interpolation, reducing the mean absolute percentage&#13;
error (MAPE) by over 40% (from 2.77% to 1.60%) and achieving&#13;
an R² value exceeding 0.99. However, experiments on synthetically&#13;
generated dense datasets showed that the traditional interpolation&#13;
method becomes more accurate as the data grid becomes less&#13;
sparse.&#13;
This study concludes that while neural network surrogates&#13;
offer a powerful, high-fidelity solution for computationally intensive&#13;
engineering problems, their adoption should be guided by&#13;
a careful analysis of data density after dataset has been cleaned&#13;
of outliers. It also highlights the necessity of employing rigorous,&#13;
application-relevant validation strategies that move beyond&#13;
simplistic random splits to accurately assess model performance.
</summary>
<dc:date>2026-03-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evaluating Adaptive AI for Contracting Officer Readiness: Design and Pedagogical Proposal for the Warrant Board RAG Chatbot</title>
<link href="https://hdl.handle.net/1721.1/165228" rel="alternate"/>
<author>
<name>Mullen, Julia</name>
</author>
<author>
<name>Grosvenor, Sarah</name>
</author>
<id>https://hdl.handle.net/1721.1/165228</id>
<updated>2026-03-21T03:08:23Z</updated>
<published>2026-03-20T00:00:00Z</published>
<summary type="text">Evaluating Adaptive AI for Contracting Officer Readiness: Design and Pedagogical Proposal for the Warrant Board RAG Chatbot
Mullen, Julia; Grosvenor, Sarah
The United States Air Force (USAF) requires a&#13;
sustained and expanding pool of warranted Contracting Officers&#13;
(COs) to meet growing operational and fiscal demands across&#13;
its global enterprise. The authority to obligate funds and bind&#13;
the government contractually—granted through the issuance&#13;
of a warrant—requires successful completion of a multi-stage&#13;
evaluation process culminating in a scenario-based oral board.&#13;
This final interview assesses a candidate’s ability to interpret&#13;
and apply acquisition policy under complex and ambiguous&#13;
conditions.&#13;
This paper proposes the design of an adaptive artificial&#13;
intelligence (AI) training system—the Warrant Board Retrieval-&#13;
Augmented Generation (RAG) Chatbot—to serve as a simulated&#13;
board-preparation environment. This chatbot inverts the common&#13;
’user question, AI answer’ model, and instead has the&#13;
chatbot ask the learner a series of critical thinking scenariobased&#13;
questions. The prototype design adopts a model-agnostic&#13;
LLM gateway capable of operation through either commercial&#13;
APIs (e.g., OpenAI) or secure, government-hosted environments&#13;
such as GenAI.mil, ensuring accessibility within unclassified Air&#13;
Force networks. This research contributes to the emerging field of&#13;
AI-assisted professional education by developing a transparent,&#13;
auditable, and pedagogically grounded framework for formative&#13;
learning in acquisition training.
</summary>
<dc:date>2026-03-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Weird A.I.</title>
<link href="https://hdl.handle.net/1721.1/165227" rel="alternate"/>
<author>
<name>Lindquist, Benjamin</name>
</author>
<id>https://hdl.handle.net/1721.1/165227</id>
<updated>2026-03-21T03:07:04Z</updated>
<published>2026-03-18T00:00:00Z</published>
<summary type="text">Weird A.I.
Lindquist, Benjamin
This essay sketches out what I call “weird AI”: probabilistic, associative systems that behave as if they feel. It shows how midcentury architects of artificial neural networks deliberately courted the uncanny as they engineered space for intuition, emotion, and nonrational thought, even as standard histories cast computing as an Enlightenment project of calculation and control. To make sense of artificial intelligence’s past and present, historians must move beyond an information-centric framework and reckon with the affective undercurrents that have shaped the field from its start.
</summary>
<dc:date>2026-03-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Vibrotactile stimulation at gamma frequency mitigates pathology related to neurodegeneration and improves motor function</title>
<link href="https://hdl.handle.net/1721.1/165226" rel="alternate"/>
<author>
<name>Suk, Ho-Jun</name>
</author>
<author>
<name>Buie, Nicole</name>
</author>
<author>
<name>Xu, Guojie</name>
</author>
<author>
<name>Banerjee, Arit</name>
</author>
<author>
<name>Boyden, Edward S</name>
</author>
<author>
<name>Tsai, Li-Huei</name>
</author>
<id>https://hdl.handle.net/1721.1/165226</id>
<updated>2026-03-20T06:10:15Z</updated>
<published>2023-05-18T00:00:00Z</published>
<summary type="text">Vibrotactile stimulation at gamma frequency mitigates pathology related to neurodegeneration and improves motor function
Suk, Ho-Jun; Buie, Nicole; Xu, Guojie; Banerjee, Arit; Boyden, Edward S; Tsai, Li-Huei
The risk for neurodegenerative diseases increases with aging, with various pathological conditions and functional deficits accompanying these diseases. We have previously demonstrated that non-invasive visual stimulation using 40 Hz light flicker ameliorated pathology and modified cognitive function in mouse models of neurodegeneration, but whether 40 Hz stimulation using another sensory modality can impact neurodegeneration and motor function has not been studied. Here, we show that whole-body vibrotactile stimulation at 40 Hz leads to increased neural activity in the primary somatosensory cortex (SSp) and primary motor cortex (MOp). In two different mouse models of neurodegeneration, Tau P301S and CK-p25 mice, daily exposure to 40 Hz vibrotactile stimulation across multiple weeks also led to decreased brain pathology in SSp and MOp. Furthermore, both Tau P301S and CK-p25 mice showed improved motor performance after multiple weeks of daily 40 Hz vibrotactile stimulation. Vibrotactile stimulation at 40 Hz may thus be considered as a promising therapeutic strategy for neurodegenerative diseases with motor deficits.
</summary>
<dc:date>2023-05-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Traffic management protocols for advanced air mobility</title>
<link href="https://hdl.handle.net/1721.1/165225" rel="alternate"/>
<author>
<name>Chin, Christopher</name>
</author>
<author>
<name>Qin, Victor</name>
</author>
<author>
<name>Gopalakrishnan, Karthik</name>
</author>
<author>
<name>Balakrishnan, Hamsa</name>
</author>
<id>https://hdl.handle.net/1721.1/165225</id>
<updated>2026-03-20T06:10:09Z</updated>
<published>2023-05-17T00:00:00Z</published>
<summary type="text">Traffic management protocols for advanced air mobility
Chin, Christopher; Qin, Victor; Gopalakrishnan, Karthik; Balakrishnan, Hamsa
The demand for advanced air mobility (AAM) operations is expected to be at a much larger scale than conventional aviation. Additionally, AAM flight operators are likely to compete in providing a range of on-demand services in congested airspaces, with varying operational costs. These characteristics motivate the need for the development of new traffic management algorithms for advanced air mobility. In this paper, we explore the use of traffic management protocols (“rules-of-the-road” for airspace access) to enable efficient and fair operations. First, we show that it is possible to avoid gridlock and improve efficiency by leveraging the concepts of cycle detection and backpressure. We then develop a cost-aware traffic management protocol based on the second-price auction. Using simulations of representative advanced air mobility scenarios, we demonstrate that our traffic management protocols can help balance efficiency and fairness, in both the operational and the economic contexts.
</summary>
<dc:date>2023-05-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>If blockchain is the solution, robot security is the problem</title>
<link href="https://hdl.handle.net/1721.1/165224" rel="alternate"/>
<author>
<name>Ferrer, Eduardo Castelló</name>
</author>
<id>https://hdl.handle.net/1721.1/165224</id>
<updated>2026-03-20T06:10:04Z</updated>
<published>2023-05-16T00:00:00Z</published>
<summary type="text">If blockchain is the solution, robot security is the problem
Ferrer, Eduardo Castelló
Robotics systems of all types are revolutionizing a wide variety of industries—transportation, manufacturing, and even healthcare—and yet, many essential ingredients for robotics systems in the real world are not technologically ready for deployment. Currently, robots lack the protocols and standards required to be safe and secure outside factories. In an attempt to close this gap, recent research has demonstrated the security benefits of combining robotics systems with blockchain-based and related technologies (e.g., smart contracts, zero-knowledge proofs, Merkle trees). In this perspective article, I argue that blockchain-based robotics is starting to provide innovative solutions (e.g., secure data sharing, consensus mechanisms, and new interaction methods) to urgent problems of robot security. I list the most important takeaways so far from this emerging field of research that I helped establish together with a growing community. I close the article by discussing the implications of the security challenges that the robotics research community is facing, and possible ways for us to move forward.
</summary>
<dc:date>2023-05-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantification of heat vulnerability using system dynamics</title>
<link href="https://hdl.handle.net/1721.1/165223" rel="alternate"/>
<author>
<name>Bayomi, Norhan</name>
</author>
<author>
<name>Fernandez, John E</name>
</author>
<id>https://hdl.handle.net/1721.1/165223</id>
<updated>2026-03-20T06:10:23Z</updated>
<published>2023-04-04T00:00:00Z</published>
<summary type="text">Quantification of heat vulnerability using system dynamics
Bayomi, Norhan; Fernandez, John E
One of the major climate threats is extreme heat events, as they pose significant risks to public health that are well documented in the epidemiologic literature. The effects of extreme heat events have been evident over the past years by several extreme heat events worldwide. With the growing concerns of future heat exposure, numerous studies in the literature have developed heat vulnerability indices based on determinants that have heat-related impacts. However, there has been limited guidance on heat vulnerability assessment that accounts for the impacts of the characteristics of the built environment and changes in population dynamics over time. This paper focuses on developing the methodology for heat vulnerability assessment in urban areas using System Dynamics (SD) based on integrating three levels of the physical urban environment: the urban level, the building level, and the human adaptive capacity to heat exposure. We examine the viability of using SD modeling as an approach to examine the key drivers in heat vulnerability assessment in urban areas. Thus, the paper assesses the dynamic relationship between heat vulnerability components, namely, Susceptibility, Exposure, Coping Capacity, and Adaptive Capacity, and their effect on increased or decreased vulnerability under extreme heat events. The paper concludes with an applied case study in Cairo, Egypt, to test the use of the SD approach in assessing heat vulnerability in urban settings. Results from the proposed SD model confirm the underlying hypothesis that vulnerability from heat exposure is dynamically linked to the coping and adaptive capacity of the surrounding built environment with the urban population’s socioeconomic characteristics. The main contribution of this approach is that it allows for parallel examination of the effect of the human system that simulation models cannot include and the performance of the built environment system that epidemic heat vulnerability studies cannot capture.
</summary>
<dc:date>2023-04-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Predicting one-year left ventricular mass index regression following transcatheter aortic valve replacement in patients with severe aortic stenosis: A new era is coming</title>
<link href="https://hdl.handle.net/1721.1/165222" rel="alternate"/>
<author>
<name>Asheghan, Mohammad Mostafa</name>
</author>
<author>
<name>Javadikasgari, Hoda</name>
</author>
<author>
<name>Attary, Taraneh</name>
</author>
<author>
<name>Rouhollahi, Amir</name>
</author>
<author>
<name>Straughan, Ross</name>
</author>
<author>
<name>Willi, James Noel</name>
</author>
<author>
<name>Awal, Rabina</name>
</author>
<author>
<name>Sabe, Ashraf</name>
</author>
<author>
<name>de la Cruz, Kim I</name>
</author>
<author>
<name>Nezami, Farhad R</name>
</author>
<id>https://hdl.handle.net/1721.1/165222</id>
<updated>2026-03-20T06:10:20Z</updated>
<published>2023-04-04T00:00:00Z</published>
<summary type="text">Predicting one-year left ventricular mass index regression following transcatheter aortic valve replacement in patients with severe aortic stenosis: A new era is coming
Asheghan, Mohammad Mostafa; Javadikasgari, Hoda; Attary, Taraneh; Rouhollahi, Amir; Straughan, Ross; Willi, James Noel; Awal, Rabina; Sabe, Ashraf; de la Cruz, Kim I; Nezami, Farhad R
Aortic stenosis (AS) is the most common valvular heart disease in the western world, particularly worrisome with an ever-aging population wherein postoperative outcome for aortic valve replacement is strongly related to the timing of surgery in the natural course of disease. Yet, guidelines for therapy planning overlook insightful, quantified measures from medical imaging to educate clinical decisions. Herein, we leverage statistical shape analysis (SSA) techniques combined with customized machine learning methods to extract latent information from segmented left ventricle (LV) shapes. This enabled us to predict left ventricular mass index (LVMI) regression a year after transcatheter aortic valve replacement (TAVR). LVMI regression is an expected phenomena in patients undergone aortic valve replacement reported to be tightly correlated with survival one and five year after the intervention. In brief, LV geometries were extracted from medical images of a cohort of AS patients using deep learning tools, and then analyzed to create a set of statistical shape models (SSMs). Then, the supervised shape features were extracted to feed a support vector regression (SVR) model to predict the LVMI regression. The average accuracy of the predictions was validated against clinical measurements calculating root mean square error and R2 score which yielded the satisfactory values of 0.28 and 0.67, respectively, on test data. Our work reveals the promising capability of advanced mathematical and bioinformatics approaches such as SSA and machine learning to improve medical output prediction and treatment planning.
</summary>
<dc:date>2023-04-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Aesthetic chills cause an emotional drift in valence and arousal</title>
<link href="https://hdl.handle.net/1721.1/165221" rel="alternate"/>
<author>
<name>Jain, Abhinandan</name>
</author>
<author>
<name>Schoeller, Felix</name>
</author>
<author>
<name>Horowitz, Adam</name>
</author>
<author>
<name>Hu, Xiaoxiao</name>
</author>
<author>
<name>Yan, Grace</name>
</author>
<author>
<name>Salomon, Roy</name>
</author>
<author>
<name>Maes, Pattie</name>
</author>
<id>https://hdl.handle.net/1721.1/165221</id>
<updated>2026-03-20T06:10:12Z</updated>
<published>2023-03-07T00:00:00Z</published>
<summary type="text">Aesthetic chills cause an emotional drift in valence and arousal
Jain, Abhinandan; Schoeller, Felix; Horowitz, Adam; Hu, Xiaoxiao; Yan, Grace; Salomon, Roy; Maes, Pattie
Aesthetic chills are an embodied peak emotional experience induced by stimuli such as music, films, and speeches and characterized by dopaminergic release. The emotional consequences of chills in terms of valence and arousal are still debated and the existing empirical data is conflicting. In this study, we tested the effects of ChillsDB, an open-source repository of chills-inducing stimuli, on the emotional ratings of 600+ participants. We found that participants experiencing chills reported significantly more positive valence and greater arousal during the experience, compared to participants who did not experience chills. This suggests that the embodied experience of chills may influence one’s perception and affective evaluation of the context, in favor of theoretical models emphasizing the role of interoceptive signals such as chills in the process of perception and decision-making. We also found an interesting pattern in the valence ratings of participants, which tended to harmonize toward a similar mean after the experiment, though initially disparately distributed. We discuss the significance of these results for the diagnosis and treatment of dopaminergic disorders such as Parkinson’s, schizophrenia, and depression.
</summary>
<dc:date>2023-03-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>On projection and the shadow of [wh]</title>
<link href="https://hdl.handle.net/1721.1/165220" rel="alternate"/>
<author>
<name>Newman, Elise</name>
</author>
<id>https://hdl.handle.net/1721.1/165220</id>
<updated>2026-04-24T03:15:48Z</updated>
<published>2026-01-01T00:00:00Z</published>
<summary type="text">On projection and the shadow of [wh]
Newman, Elise
Much work has shown that wh-movement is subject to several kinds of locality restrictions cross-linguistically. I propose that these restrictions arise when [wh] projects&#13;
past the maximal projection that it came from. When this happens, it intervenes for whmovement, trapping the wh-element in its base position, unless it can escape through other&#13;
means. The need to escape the domain of [wh] is proposed to capture the distribution of&#13;
successive-cyclic movement and interactions with Voice in different languages. Different&#13;
locality conditions in different languages are captured by different distributions of the same&#13;
features and probes.
</summary>
<dc:date>2026-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Discussion of “Experimental Design and Modeling for Forward-Inverse Maps” by R. Barton &amp; M. Morris, appearing in Technometrics</title>
<link href="https://hdl.handle.net/1721.1/165219" rel="alternate"/>
<author>
<name>Marzouk, Youssef M.</name>
</author>
<id>https://hdl.handle.net/1721.1/165219</id>
<updated>2026-04-24T03:16:13Z</updated>
<published>2025-05-20T00:00:00Z</published>
<summary type="text">Discussion of “Experimental Design and Modeling for Forward-Inverse Maps” by R. Barton &amp; M. Morris, appearing in Technometrics
Marzouk, Youssef M.
Inverse design—essentially the problem of finding system parameter values that achieve a given performance metric—is an enormously important problem across a wide range of engineering fields. Typical methods for inverse design employ a forward model for example, a complex computer simulation mapping design parameters to performance metrics, and embed it in an optimization loop. If the forward model is a black box, for which direct evaluation of gradients is intractable, then one must resort to derivative-free or so-called “zeroth order” optimization approaches (e.g., Močkus Citation1975; Jones, Schonlau, and Welch Citation1998; Conn, Scheinberg, and Vicente Citation2009; Larson, Menickelly, and Wild Citation2019). Most of these approaches iteratively construct a metamodel for the forward map during optimization. Barton and Morris (henceforth “the authors” or “BM”) propose instead to build an inverse metamodel, that is, a computationally inexpensive approximation of the performance metric-to-parameter map. The promise of such an inverse metamodel is that it makes inverse design much faster and more direct, bypassing the need for explicit optimization.
</summary>
<dc:date>2025-05-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Where Are All the CFOs?</title>
<link href="https://hdl.handle.net/1721.1/165218" rel="alternate"/>
<author>
<name>Wright, Randall S.</name>
</author>
<id>https://hdl.handle.net/1721.1/165218</id>
<updated>2026-04-17T03:13:34Z</updated>
<published>2026-03-03T00:00:00Z</published>
<summary type="text">Where Are All the CFOs?
Wright, Randall S.
In my 38 years with MIT’s Office of Corporate Relations, where I worked with and advised executives, I saw chief executive officers (CEOs), company presidents, managing directors, general managers, chief information officers (CIOs), chief technology officers (CTOs), vice presidents, chief scientists, chief counsels, directors of innovation hubs, managers of strategic alliances, technology entrepreneurs, managers of supply chains, presidents of European Trade Commissions, scientific attachés, senior NATO officers, ministers of economics, speakers of parliaments, chancellors, governors, Members of Congress . . .
</summary>
<dc:date>2026-03-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>An Alternative to Probability Tables for Modeling Unresolved Resonance Behavior</title>
<link href="https://hdl.handle.net/1721.1/165217" rel="alternate"/>
<author>
<name>Ridley, Gavin</name>
</author>
<author>
<name>Forget, Benoit</name>
</author>
<id>https://hdl.handle.net/1721.1/165217</id>
<updated>2026-03-19T03:07:12Z</updated>
<published>2025-12-17T00:00:00Z</published>
<summary type="text">An Alternative to Probability Tables for Modeling Unresolved Resonance Behavior
Ridley, Gavin; Forget, Benoit
We first review the requirements of Monte Carlo neutron transport codes to accurately model the phenomena associated with the unresolved resonance regime and present the first rigorous justification for the modeling assumption employed by probability tables for unresolved resonances. We present a new method named AURA (analytic unresolved resonance algorithm) for modeling unresolved resonance cross-sections with the normal inverse Gaussian distribution. The new method accurately models temperature dependence in the unresolved resonance region (URR), requires fewer data than previous methods, and outperforms the conventional URR treatment on GPUs.
</summary>
<dc:date>2025-12-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Direct Sampling of the Egelstaff-Schofield Scattering Law and the Phonon Sampling Method for Liquids</title>
<link href="https://hdl.handle.net/1721.1/165216" rel="alternate"/>
<author>
<name>Ridley, Gavin</name>
</author>
<author>
<name>Forget, Benoit</name>
</author>
<id>https://hdl.handle.net/1721.1/165216</id>
<updated>2026-04-17T03:14:27Z</updated>
<published>2025-12-15T00:00:00Z</published>
<summary type="text">Direct Sampling of the Egelstaff-Schofield Scattering Law and the Phonon Sampling Method for Liquids
Ridley, Gavin; Forget, Benoit
The phonon sampling method (PSM) enables accurate and efficient simulation of thermal neutron scattering from solids; it obviates a substantial degree of discretization, enabling continuous representations of scattering law behavior across a variety of conditions. Despite these strengths, the PSM relies on the phonon expansion, which only applies to solid materials. To remove this limitation, we demonstrate an efficient sampling algorithm for the nonsymmetric translational &#119982;⁡(&#120572;,&#120573;) distribution of Egelstaff and Schofield, and show how this can be used to extend the PSM for the simulation of thermal neutron scattering in materials exhibiting mixed translational and vibrational behavior, such as water or molten salts. We demonstrate the correctness of the method with example results for scattering from room temperature water at a few incident neutron energies.
</summary>
<dc:date>2025-12-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Preliminary Verification of Fixed-Source Sensitivity Analysis in OpenMC</title>
<link href="https://hdl.handle.net/1721.1/165215" rel="alternate"/>
<author>
<name>Ebiwonjumi, Bamidele</name>
</author>
<author>
<name>Forget, Benoit</name>
</author>
<author>
<name>Peterson, Ethan</name>
</author>
<id>https://hdl.handle.net/1721.1/165215</id>
<updated>2026-04-24T03:15:40Z</updated>
<published>2026-01-02T00:00:00Z</published>
<summary type="text">Preliminary Verification of Fixed-Source Sensitivity Analysis in OpenMC
Ebiwonjumi, Bamidele; Forget, Benoit; Peterson, Ethan
Sensitivity analysis capabilities have yet to find extensive use in fusion reactor design applications where they can help understand the impact of nuclear data uncertainties on the tritium breeding ratio (TBR), shutdown dose rates, and nuclear heating. Significant uncertainty exists in nuclear data for fusion applications, and the goal of this work is to explore whether adjoint- and perturbation theory–based eigenvalue and generalized response sensitivity methods recently developed within the OpenMC Monte Carlo code can be extended to fixed-source Monte Carlo radiation transport simulations.&#13;
&#13;
This paper presents a derivation for the extended sensitivity analysis method. The adjoint-based sensitivity coefficients are compared with Monte Carlo SERPENT sensitivity coefficients for a TBR calculation in a simplified ARC-class tokamak. Further verification with the Monte Carlo MCSEN and deterministic ASUSD sensitivity coefficients for the tritium production rate in the Frascati neutron generator helium-cooled pebble bed test blanket module mock-up experiment was performed. The OpenMC sensitivity coefficients were found to agree with the other code systems. The use of the sensitivity coefficients with nuclear data covariance within the sandwich rule for cross-section uncertainty propagation also showed good agreement with the reference total Monte Carlo nuclear data uncertainty.
</summary>
<dc:date>2026-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Supply chain mapping through retrieval-augmented generation: applications to the electronics industry</title>
<link href="https://hdl.handle.net/1721.1/165214" rel="alternate"/>
<author>
<name>Jackson, Ilya</name>
</author>
<author>
<name>Saénz, Maria Jesus</name>
</author>
<author>
<name>Ivanov, Dmitry</name>
</author>
<author>
<name>Ma, Benedict Jun</name>
</author>
<id>https://hdl.handle.net/1721.1/165214</id>
<updated>2026-04-17T03:14:01Z</updated>
<published>2025-12-19T00:00:00Z</published>
<summary type="text">Supply chain mapping through retrieval-augmented generation: applications to the electronics industry
Jackson, Ilya; Saénz, Maria Jesus; Ivanov, Dmitry; Ma, Benedict Jun
This paper presents a novel methodology for automated multi-tier supply chain mapping, leveraging Retrieval-Augmented Generation (RAG) and network science techniques. We developed an RAG-based approach that extracts supplier-customer relationships from unstructured public data sources, including SEC 10-K filings and earnings calls. The extracted entities are structured into a directed supply chain graph and analysed using network science metrics such as centrality, modularity, and path length. The case study focuses on three of the largest contract manufacturers in the electronics industry: Hon Hai Precision Industry (Foxconn), Flex Ltd., and Jabil Inc. Our findings demonstrate that Generative AI (GAI), specifically LLMs enhanced with RAG, can construct scalable and comprehensive supply chain graphs. The proof of concept is successful, as evidenced by the construction of a directed supply chain graph encompassing 4,644 nodes and 8,341 edges, covering three of the largest contract manufacturers in the electronics industry.
</summary>
<dc:date>2025-12-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantifying Flash Flood Inundation and Assessing Damage Using Satellite Earth Observations: The Case of 2022 Flash Flood in Bangladesh</title>
<link href="https://hdl.handle.net/1721.1/165213" rel="alternate"/>
<author>
<name>Sariful, Md</name>
</author>
<author>
<name>Mitra, Juthi Rani</name>
</author>
<author>
<name>Rahman, Munshi Khaledur</name>
</author>
<id>https://hdl.handle.net/1721.1/165213</id>
<updated>2026-04-17T03:13:38Z</updated>
<published>2026-01-02T00:00:00Z</published>
<summary type="text">Quantifying Flash Flood Inundation and Assessing Damage Using Satellite Earth Observations: The Case of 2022 Flash Flood in Bangladesh
Sariful, Md; Mitra, Juthi Rani; Rahman, Munshi Khaledur
Floods pose significant threats to Bangladesh, frequently causing the loss of lives, properties, infrastructure, and livelihoods. This study examines the spatial and temporal dynamics of the 2022 Sylhet flood by integrating Sentinel-1 Synthetic Aperture Radar (SAR) imagery with socioeconomic datasets. Otsu thresholding method was used to estimate water extent before, during, and after the 2022 flood event in the Sylhet region. Results suggest that over 1,600 km² of land in Sylhet division was inundated, with Habiganj district experiencing the highest surge. More than half a million people were directly impacted, alongside significant damage to cropland and urban areas. Furthermore, the study highlighted substantial impacts on urban built-up areas and cropland across districts. Cumulative cropland damage increased from 3376.30 km² in June to 4701.30 km² in July, indicating severe consequences for agricultural productivity. Concurrently, the affected built-up areas were found to be 40.9 km², emphasizing the impact on human settlements. By providing a detailed assessment of flood extent and damage, this study provides valuable insights for policymakers, planners, and disaster management authorities. The findings support the development of targeted strategies for flood risk reduction, agricultural resilience, and the mitigation of future disaster impacts in vulnerable regions of Bangladesh.
</summary>
<dc:date>2026-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>GeoXCP: uncertainty quantification of spatial explanations in explainable AI</title>
<link href="https://hdl.handle.net/1721.1/165212" rel="alternate"/>
<author>
<name>Lou, Xiayin</name>
</author>
<author>
<name>Luo, Peng</name>
</author>
<author>
<name>Li, Ziqi</name>
</author>
<author>
<name>Gao, Song</name>
</author>
<author>
<name>Meng, Liqiu</name>
</author>
<id>https://hdl.handle.net/1721.1/165212</id>
<updated>2026-04-17T03:14:10Z</updated>
<published>2025-10-10T00:00:00Z</published>
<summary type="text">GeoXCP: uncertainty quantification of spatial explanations in explainable AI
Lou, Xiayin; Luo, Peng; Li, Ziqi; Gao, Song; Meng, Liqiu
Understanding and explaining complex geographic phenomena—ranging from climate change to socioeconomic disparities—is a central focus in both geography and the broader scientific community. Various methods have been developed to elucidate relationships between variables, from coefficient estimates in linear regression models to the increasingly dominant use of feature attribution scores in Explainable AI (XAI) techniques. However, explanations generated by XAI methods often carry uncertainty, stemming from the model itself and the data used to train the model. Despite the critical importance of accounting for such uncertainty, this issue remains largely overlooked in the geospatial domain. In this study, we developed an uncertainty quantification framework for XAI explanations based on conformal prediction, termed Geospatial eXplanation Conformal Prediction (GeoXCP). By incorporating spatial dependence into the modeling process, GeoXCP produced spatially adaptive explanations with calibrated uncertainty estimates. We validated the effectiveness of GeoXCP through extensive simulation experiments and real-world datasets. The results demonstrated that GeoXCP provided reliable explanations while effectively quantifying uncertainty across diverse geospatial scenarios. Our approach represented a significant advancement in explainable geospatial machine learning, enabling decision-makers to better assess the trustworthiness of model-driven insights. The proposed framework was implemented in a python package, named GeoXCP.
</summary>
<dc:date>2025-10-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rapidly innovating firms: patent lifecycle and support for trade and IP enforcement</title>
<link href="https://hdl.handle.net/1721.1/165211" rel="alternate"/>
<author>
<name>Cha, Sujin</name>
</author>
<author>
<name>Lee, Jieun</name>
</author>
<author>
<name>Osgood, Iain</name>
</author>
<author>
<name>Park, Sojun</name>
</author>
<id>https://hdl.handle.net/1721.1/165211</id>
<updated>2026-04-24T03:16:15Z</updated>
<published>2026-03-04T00:00:00Z</published>
<summary type="text">Rapidly innovating firms: patent lifecycle and support for trade and IP enforcement
Cha, Sujin; Lee, Jieun; Osgood, Iain; Park, Sojun
The rate of technological innovation and the speed with which old technologies are discarded are fundamental features of industries in the modern economy. How do these factors shape the politics of trade and trade agreements? We describe two potential channels. In one, rapid innovators support trade agreements and trade liberalization because of their privileged competitive position at the cutting edge of innovation. In the other, rapid innovators support trade agreements and intellectual property (IP) enforcement due to their particular need for speed in patent approval and enforcement. By matching data on patent lifecycles to data on United States (US) tariffs and corporate support for trade agreements and IP enforcement, we test these two theoretical accounts. We find evidence consistent with both. We conclude that rapidly innovating firms are strong supporters of globalization, though their political successes have also contributed to contention over the contemporary international order, both at home and abroad.
</summary>
<dc:date>2026-03-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Grounding infrastructure: community ownership of an international cooperation project in Kibera, Nairobi</title>
<link href="https://hdl.handle.net/1721.1/165210" rel="alternate"/>
<author>
<name>Williams, Sarah</name>
</author>
<author>
<name>Carolini, Gabriella</name>
</author>
<id>https://hdl.handle.net/1721.1/165210</id>
<updated>2026-03-19T03:07:23Z</updated>
<published>2026-02-06T00:00:00Z</published>
<summary type="text">Grounding infrastructure: community ownership of an international cooperation project in Kibera, Nairobi
Williams, Sarah; Carolini, Gabriella
International infrastructure projects are deeply ensconced in debates about power, intentions, and imaginaries of progress that also stir debate about what it means to decolonize international relations and projects that nominally build improvements in low-income environments. Traditional prioritization of technical expertise, the criticality of contextual knowledge, and the dynamics of uneven partnerships involved are all central elements of these pronounced tensions in the practice of international infrastructure development. This paper instead describes an international infrastructure project that is centred on community stewardship and co-design. The infrastructure project Living Data Hubs (LDH), highlighted here, is a small-scale information and communication technology (ICT) and data management project in the informal settlement of Kibera in Nairobi, Kenya. In its development, equal attention was afforded to technical, conceptual, and procedural knowledge production, ensuring that both universal and contextual elements of the ICT infrastructure and data management were explicitly discussed and valued. We argue that international partnerships like LDH that give space to technical, conceptual, and procedural capacity building alike can produce community stewarded infrastructure that is sustainable and puts forward a pathway for diminishing uneven power relations and enhancing community well-being.
</summary>
<dc:date>2026-02-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Writing revolutions:1 From Haiti to MIT to Palestine through the lenses of linguistics and history for decolonization and liberation</title>
<link href="https://hdl.handle.net/1721.1/165209" rel="alternate"/>
<author>
<name>DeGraff, Michel</name>
</author>
<id>https://hdl.handle.net/1721.1/165209</id>
<updated>2026-05-08T03:12:22Z</updated>
<summary type="text">Writing revolutions:1 From Haiti to MIT to Palestine through the lenses of linguistics and history for decolonization and liberation
DeGraff, Michel
In this reflexive essay, I explore, through historical and linguistic lenses, the similarities between the freedom struggles of Haitians and Palestinians. One of my goals is to uncover certain pervasive mechanisms of oppression and resistance. As I do so, I reflect on my personal and professional journey as a Haitian scholar–activist at MIT, highlighting the political repression I have faced after proposing an elective “Special Topics” seminar on language and linguistics for decolonization and liberation in Haiti, Palestine and Israel. Employing distinct yet complementary analytical approaches, I dissect the complex interplay between language and history in the Haitian and Palestinian struggles. By integrating historical perspectives with linguistic analysis, I illustrate how these elements collectively contribute to forging paths toward decolonization and liberation, at both the individual and collective levels.
</summary>
</entry>
<entry>
<title>Advancing Pedestrian Models: A Comparative Review and Vision for the Future</title>
<link href="https://hdl.handle.net/1721.1/165208" rel="alternate"/>
<author>
<name>Zafri, Niaz Mahmud</name>
</author>
<author>
<name>Sevtsuk, Andres</name>
</author>
<id>https://hdl.handle.net/1721.1/165208</id>
<updated>2026-04-24T03:14:09Z</updated>
<published>2026-02-23T00:00:00Z</published>
<summary type="text">Advancing Pedestrian Models: A Comparative Review and Vision for the Future
Zafri, Niaz Mahmud; Sevtsuk, Andres
Problem, research strategy, and findings&#13;
Pedestrian mobility is essential for creating sustainable, healthy, and equitable cities, yet pedestrian modeling remains underdeveloped compared with vehicle-centric approaches. To advance the state of the art, we critically review four available pedestrian modeling frameworks—urban network analysis (UNA), multi-agent transport simulation (MATSim), model of pedestrian demand (MoPeD), and spatial design network analysis (sDNA)—through the lens of the traditional four-step transportation modeling framework. We assess their methodological foundations, capabilities, practical applications, and limitations and outline future directions for improving modeling practice. UNA and sDNA offer high-resolution, trip-based network analyses; MATSim supports agent- and activity-based multimodal simulations; and MoPeD estimates grid-level pedestrian demand. Despite these strengths, several key gaps remain: Most models focus predominantly on utilitarian walking, neglect leisure and social activities, typically assume homogeneous pedestrian behavior by overlooking sociodemographic variations, face shortcomings with mode choice estimation, and are rarely applied in informal urban contexts. Furthermore, limited availability of pedestrian count data continues to constrain effective model calibration and validation.&#13;
&#13;
Takeaway for practice&#13;
We propose that researchers and planners adopt a human-centered, inclusive, and policy-aligned modeling agenda, emphasizing simple yet intuitive metrics that capture the full spectrum of walking benefits, supporting early-stage planning even in data-scarce contexts, fostering stronger collaboration with practitioners, and promoting a modular, adaptable modeling ecosystem. Ultimately, reorienting pedestrian models as flexible decision support tools—rather than narrowly focused forecasting instruments—can meaningfully support the development of more walkable cities.
</summary>
<dc:date>2026-02-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reasons for Non-Agents</title>
<link href="https://hdl.handle.net/1721.1/165207" rel="alternate"/>
<author>
<name>Watkins, Eliot</name>
</author>
<id>https://hdl.handle.net/1721.1/165207</id>
<updated>2026-03-18T03:07:07Z</updated>
<published>2024-09-16T00:00:00Z</published>
<summary type="text">Reasons for Non-Agents
Watkins, Eliot
According to a standard picture, normative reasons do not extend beyond the boundaries of agency. If something isn’t an agent, then there can’t be normative reasons for it to do one thing rather than another. This paper argues that the standard picture is false. There are reasons for smoke detectors to alarm when exposed to smoke, and for Venus Flytraps to close around their prey when stimulated. I argue that the collapse of the standard picture has important implications for philosophical debates about reasons, and especially serious consequences for theories that analyse normative reasons in terms of the standards of good practical reasoning.
</summary>
<dc:date>2024-09-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fully 3D-Printed Electric Motor Manufactured via Multi-Modal, Multi-Material Extrusion</title>
<link href="https://hdl.handle.net/1721.1/165206" rel="alternate"/>
<author>
<name>Cañada, Jorge</name>
</author>
<author>
<name>Bigelow, Zoey</name>
</author>
<author>
<name>Velásquez-García, Luis Fernando</name>
</author>
<id>https://hdl.handle.net/1721.1/165206</id>
<updated>2026-04-24T03:14:56Z</updated>
<published>2026-01-02T00:00:00Z</published>
<summary type="text">Fully 3D-Printed Electric Motor Manufactured via Multi-Modal, Multi-Material Extrusion
Cañada, Jorge; Bigelow, Zoey; Velásquez-García, Luis Fernando
Material extrusion additive manufacturing can process a wide variety of functional materials including electrically conductive, magnetic, and mechanically compliant polymer composites. While filaments developed for 3D printing often exhibit limited functionality, highly loaded functional composites originally formulated for specialised manufacturing processes can be processed via material extrusion. In this work, a commercial multi-material extrusion 3D printer was modified to process conductive inks, soft and hard magnetic composite pellets, and rigid and compliant polymeric filaments. Using this system, solenoids, hard magnets, and springs were fabricated. These components were combined through straightforward assembly to demonstrate the first fully 3D-printed electric motor — a linear actuator composed of five distinct functional materials: dielectric, electrically conductive, soft magnetic, hard magnetic, and flexible. The solenoids produced up to 2.03 mT magnetic fields, the magnets generated up to 71 mT magnetic fields, and the linear actuator attained a maximum displacement of 318 μm at its resonant frequency (41.6 Hz). This study demonstrates the capability of multi-modal, multi-material extrusion 3D printing to fabricate all critical components of electrical machines, with magnetisation of the hard magnets being the only post-printing step. This milestone advances multi-material, multi-functional 3D printing towards implementing in-situ, customised, low-waste, and low-cost functional hardware.
</summary>
<dc:date>2026-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Partial Identification of Individual-Level Parameters Using Aggregate Data in a Nonparametric Model</title>
<link href="https://hdl.handle.net/1721.1/165205" rel="alternate"/>
<author>
<name>Moon, Sarah</name>
</author>
<id>https://hdl.handle.net/1721.1/165205</id>
<updated>2026-05-08T03:13:38Z</updated>
<published>2025-12-08T00:00:00Z</published>
<summary type="text">Partial Identification of Individual-Level Parameters Using Aggregate Data in a Nonparametric Model
Moon, Sarah
I develop a methodology to partially identify linear combinations of conditional mean outcomes when the researcher only has access to aggregate data. Unlike the existing literature, I only allow for marginal, not joint, distributions of covariates in my model of aggregate data. Bounds are obtained by solving an optimization program and can easily accommodate additional polyhedral shape restrictions. I provide a procedure to construct confidence intervals on the identified set and demonstrate the performance of my method in a simulation study. In an empirical illustration of the method using Rhode Island standardized exam data, I find that conditional pass rates vary across student subgroups and across counties.
</summary>
<dc:date>2025-12-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shaping suburbia: the one-and-a-half-century evolution of setback regulations in American neighbourhood development</title>
<link href="https://hdl.handle.net/1721.1/165204" rel="alternate"/>
<author>
<name>Zhu, Chenhao</name>
</author>
<author>
<name>Ben-Joseph, Eran</name>
</author>
<id>https://hdl.handle.net/1721.1/165204</id>
<updated>2026-05-08T03:13:23Z</updated>
<published>2026-01-15T00:00:00Z</published>
<summary type="text">Shaping suburbia: the one-and-a-half-century evolution of setback regulations in American neighbourhood development
Zhu, Chenhao; Ben-Joseph, Eran
A comprehensive understanding of setback regulations is vital to American neighbourhood development and ongoing zoning reform efforts; however, the topic remains underexplored. By examining zoning codes, historical documents, norms, and development plans, this study traces the evolution of setback regulations from the 19th century to the present. The results map out the historical trajectory of setback regulations, highlight their evolving roles in shaping neighbourhood development, and synthesize the regulatory and dimensional trends. Building on the findings, insights are offered into the multifaceted roles of setbacks, the implications of identified historical periods, and recommendations for innovating future setback regulations.
</summary>
<dc:date>2026-01-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>The European Union’s CBAM: averting emissions leakage or promoting the diffusion of carbon pricing?</title>
<link href="https://hdl.handle.net/1721.1/165203" rel="alternate"/>
<author>
<name>Mehling, Michael A.</name>
</author>
<author>
<name>Dolphin, Geoffroy</name>
</author>
<author>
<name>Ritz, Robert A.</name>
</author>
<id>https://hdl.handle.net/1721.1/165203</id>
<updated>2026-04-24T03:15:54Z</updated>
<published>2025-11-13T00:00:00Z</published>
<summary type="text">The European Union’s CBAM: averting emissions leakage or promoting the diffusion of carbon pricing?
Mehling, Michael A.; Dolphin, Geoffroy; Ritz, Robert A.
Adopted in 2023, the Carbon Border Adjustment Mechanism (CBAM) is a significant component of the European Union’s ambitious decarbonization strategy under the European Green Deal. This article questions the output effectiveness of the CBAM in achieving its stated objective, prevention of carbon leakage, while demonstrating its impact effectiveness as an instrument for advancing the global diffusion of carbon pricing. Empirical evidence for carbon leakage remains sparse, and implementation challenges might limit the capacity of the CBAM to counteract leakage even where it occurs. Nonetheless, the CBAM has already demonstrated a powerful spillover effect by incentivizing the acceleration of carbon pricing roadmaps across EU trade partners, suggesting that trade-related climate measures can effectively encourage global climate action. As the EU navigates the complexities of operationalizing the CBAM, it must balance several tradeoffs to maintain this important spillover effect. If successful, the CBAM could catalyze a virtuous cycle of carbon pricing adoption, reinforcing its potentially pivotal role in the EU’s toolbox to manage the environment-trade nexus.
</summary>
<dc:date>2025-11-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shadow players of the eviction crisis: identifying and characterizing professional evicting attorneys in Massachusetts</title>
<link href="https://hdl.handle.net/1721.1/165202" rel="alternate"/>
<author>
<name>Aizman, Asya</name>
</author>
<author>
<name>Huntley, Eric Robsky</name>
</author>
<id>https://hdl.handle.net/1721.1/165202</id>
<updated>2026-04-24T03:14:33Z</updated>
<published>2025-11-17T00:00:00Z</published>
<summary type="text">Shadow players of the eviction crisis: identifying and characterizing professional evicting attorneys in Massachusetts
Aizman, Asya; Huntley, Eric Robsky
This paper examines an under-studied class of actors in the housing system: attorneys representing landlords. We use a cluster-detection algorithm to identify salient clusters of attorneys based on their scale of operations. We then characterize these groups—what we call professional, active, less active, and least active evicting and tenant attorneys—using metrics related to the geographic scope of their practice, their prevalence in eviction court, case outcomes, and client base. We find that there are large differences between the practices of professional and less active landlord attorneys: professional attorneys’ cases are resolved more quickly, more regularly result in executions, affect more varied geographies, and have a greater proportion of institutional clients. Placed in a growing body of literature on eviction and advocacy for tenants’ Right to Counsel, we argue that professional evicting attorneys—most of whom are named or founding principal—are not neutral actors, but are contributing to the worsening eviction crisis in class solidarity with landlords.
</summary>
<dc:date>2025-11-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Adaptive Digital Twin Modeling with Control: Integration of Extended Kalman Filter-Based Recursive Sparse Nonlinear Identification with Model Predictive Control</title>
<link href="https://hdl.handle.net/1721.1/165201" rel="alternate"/>
<author>
<name>Wang, Jingyi</name>
</author>
<author>
<name>Cao, Liang</name>
</author>
<author>
<name>Cao, Yankai</name>
</author>
<author>
<name>Gopaluni, Bhushan</name>
</author>
<id>https://hdl.handle.net/1721.1/165201</id>
<updated>2026-05-08T03:13:32Z</updated>
<published>2026-03-09T00:00:00Z</published>
<summary type="text">Adaptive Digital Twin Modeling with Control: Integration of Extended Kalman Filter-Based Recursive Sparse Nonlinear Identification with Model Predictive Control
Wang, Jingyi; Cao, Liang; Cao, Yankai; Gopaluni, Bhushan
The adoption of digital twins has revolutionized industrial process simulation, monitoring, and control effectiveness. However, practical implementations of digital twins are hindered by substantial challenges, including extended development time, diminishing model accuracy, and restricted interactive capabilities. Addressing these critical issues, this paper proposes a comprehensive digital twin development framework that integrates digital twin identification, real-time model updating, and advanced process control. The proposed approach first identifies the offline digital twin model through the sparse identification of a nonlinear dynamics algorithm, reducing the digital twin development time while maintaining model fidelity. Then, the identified model is updated by the extended Kalman filter to mitigate the problem of diminishing accuracy. Finally, incorporating the latest updated model into the model predictive control facilitates the control inputs optimization and enhances the interactive capacity of digital twins. Through one industrial case study and two simulation examples, the advantages of the proposed algorithm are demonstrated.
</summary>
<dc:date>2026-03-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>FastComposer: Tuning-Free Multi-subject Image Generation with Localized Attention</title>
<link href="https://hdl.handle.net/1721.1/165200" rel="alternate"/>
<author>
<name>Xiao, Guangxuan</name>
</author>
<author>
<name>Yin, Tianwei</name>
</author>
<author>
<name>Freeman, William T.</name>
</author>
<author>
<name>Durand, Frédo</name>
</author>
<author>
<name>Han, Song</name>
</author>
<id>https://hdl.handle.net/1721.1/165200</id>
<updated>2026-05-08T03:12:54Z</updated>
<published>2024-09-19T00:00:00Z</published>
<summary type="text">FastComposer: Tuning-Free Multi-subject Image Generation with Localized Attention
Xiao, Guangxuan; Yin, Tianwei; Freeman, William T.; Durand, Frédo; Han, Song
Diffusion models excel at text-to-image generation, especially in subject-driven generation for personalized images. However, existing methods are inefficient due to the subject-specific fine-tuning, which is computationally intensive and hampers efficient deployment. Moreover, existing methods struggle with multi-subject generation as they often blend identity among subjects. We present FastComposer which enables efficient, personalized, multi-subject text-to-image generation without fine-tuning. FastComposer uses subject embeddings extracted by an image encoder to augment the generic text conditioning in diffusion models, enabling personalized image generation based on subject images and textual instructions with only forward passes. To address the identity blending problem in the multi-subject generation, FastComposer proposes cross-attention localization supervision during training, enforcing the attention of reference subjects localized to the correct regions in the target images. Naively conditioning on subject embeddings results in subject overfitting. FastComposer proposes delayed subject conditioning in the denoising step to maintain both identity and editability in subject-driven image generation. FastComposer generates images of multiple unseen individuals with different styles, actions, and contexts. It achieves 300&#13;
              &#13;
                &#13;
              &#13;
              $$\times $$&#13;
              &#13;
                ×&#13;
              &#13;
            –2500&#13;
              &#13;
                &#13;
              &#13;
              $$\times $$&#13;
              &#13;
                ×&#13;
              &#13;
             speedup compared to fine-tuning-based methods and requires zero extra storage for new subjects. FastComposer paves the way for efficient, personalized, and high-quality multi-subject image creation. Code, model, and dataset are available here (&#13;
              https://github.com/mit-han-lab/fastcomposer&#13;
              &#13;
            ).
</summary>
<dc:date>2024-09-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Molecular Mechanisms of Liver Metastasis: Connecting Biology, Biomarkers, and Outcomes</title>
<link href="https://hdl.handle.net/1721.1/165199" rel="alternate"/>
<author>
<name>Wagner, Doris</name>
</author>
<author>
<name>Balzer, Felix</name>
</author>
<author>
<name>Margonis, Georgios Antonios</name>
</author>
<id>https://hdl.handle.net/1721.1/165199</id>
<updated>2026-04-24T03:14:25Z</updated>
<published>2026-03-05T00:00:00Z</published>
<summary type="text">Molecular Mechanisms of Liver Metastasis: Connecting Biology, Biomarkers, and Outcomes
Wagner, Doris; Balzer, Felix; Margonis, Georgios Antonios
In our Special Issue titled “Molecular Mechanisms of Liver Metastases,” we aimed to attract articles that connect metastasis mechanisms and biomarkers with clinical disease characteristics and patient outcomes. Starting with the review paper by the Ohio State group, the authors provide valuable insight into the complex, multi-step molecular mechanisms underpinning liver metastasis [1]. Moving from pathogenesis to the prognostic and predictive role of clinically actionable proxies of tumor biology, the University of California, San Francisco (UCSF) group reviews current evidence on the prognostic and predictive relevance of key alterations—including RAS, BRAF, mismatch repair (MMR) genes, TP53, and SMAD4—in surgically treated colorectal liver metastases (CRLMs) [2]. For RAS and BRAF in particular—given the breadth of existing evidence—the authors emphasize the largest and/or the most recently published studies to provide the most robust and contemporary overview for readers.
</summary>
<dc:date>2026-03-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Stability and Reactivity of Alternative Nucleobases in Concentrated Sulfuric Acid</title>
<link href="https://hdl.handle.net/1721.1/165198" rel="alternate"/>
<author>
<name>Huang, Jingcheng</name>
</author>
<author>
<name>Seager, Sara</name>
</author>
<author>
<name>Seager, Maxwell D.</name>
</author>
<author>
<name>Petkowski, Janusz J.</name>
</author>
<id>https://hdl.handle.net/1721.1/165198</id>
<updated>2026-05-08T03:13:58Z</updated>
<published>2026-03-03T00:00:00Z</published>
<summary type="text">Stability and Reactivity of Alternative Nucleobases in Concentrated Sulfuric Acid
Huang, Jingcheng; Seager, Sara; Seager, Maxwell D.; Petkowski, Janusz J.
Recent findings demonstrate that concentrated sulfuric acid supports rich organic chemistry, including the stability of the canonical DNA bases adenine, thymine, guanine and cytosine. Yet, due to full protonation in concentrated sulfuric acid, these bases may not pair as effectively as they do in water. We are therefore motivated to study nucleic acid bases that pair via hydrophobic and van der Waals interactions instead of canonical hydrogen bonding. Here, we investigate the stability of 14 selected, commercially available alternative nucleobases in concentrated sulfuric acid to evaluate their potential for forming DNA-like polymers in this solvent. The reactivity of compounds 1–14 have not been previously investigated in concentrated sulfuric acid. We incubate the selected compounds in 98% and 81% w/w sulfuric acid and monitor their stability using 1H and 13C NMR spectroscopy over 3 weeks at room temperature. In 98% w/w sulfuric acid, six bases—benzo[c][1,2,5]thiadiazole (1), 2,2′-bipyridine (2), 1,1′-biphenyl (3), 1-methoxy-3-methylbenzene (MMO2) (7) and 1-chloro-3-methoxybenzene (ClMO) (13), and 2,4-difluorotoluene (14)—remain soluble and stable with no detectable degradation. A few compounds show non-destructive reactivity, like sulfonation (compound 3) or H/D exchange (compounds 7, 13, 14). The other compounds react rapidly or are insoluble in 98% w/w sulfuric acid. In 81% w/w sulfuric acid, only compounds 1 and 2 remain stable and soluble, while other selected compounds are insoluble or unstable. Our findings identify a subset of alternative bases stable in concentrated sulfuric acid, advancing efforts towards the design of an example genetic-like polymer in this unusual solvent. Our work further highlights sulfuric acid’s potential for supporting complex organic chemistry, with implications for astrobiology, planetary science of Venus and synthetic biology.
</summary>
<dc:date>2026-03-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Examining the Uptake and Effectiveness of the Climate Justice Instructional Toolkit</title>
<link href="https://hdl.handle.net/1721.1/165197" rel="alternate"/>
<author>
<name>Rabe, Chris</name>
</author>
<author>
<name>Schlegel, Madeline</name>
</author>
<author>
<name>Mitchell, Pearl</name>
</author>
<id>https://hdl.handle.net/1721.1/165197</id>
<updated>2026-04-24T03:14:59Z</updated>
<published>2026-02-24T00:00:00Z</published>
<summary type="text">Examining the Uptake and Effectiveness of the Climate Justice Instructional Toolkit
Rabe, Chris; Schlegel, Madeline; Mitchell, Pearl
Climate justice is an accelerating global movement in which education plays a vital role in building awareness, understanding and catalyzing action. Yet, many institutions of higher education face persistent barriers to integrating climate justice across disciplines, including limited institutional focus, lack of faculty expertise, and, more recently, heightened political constraints. In response, climate justice educators have proposed a range of strategies—such as conducting faculty workshops, hosting events, offering incentives, increasing funding, and developing curricular tools—though few studies have examined how curricular resources themselves can advance climate justice education. The Climate Justice Instructional Toolkit (CJIT) was developed to address this gap by providing accessible, adaptable materials to help instructors, even those with limited prior experience, incorporate climate and environmental justice into diverse disciplines. Using a novel survey tool across multiple educational contexts, this study used a mixed methods approach to analyze 76 survey responses to evaluate the CJIT’s effectiveness and user experiences among postsecondary instructors, K–12 teachers, and students. The findings showed broad positive feedback regarding the toolkit’s adaptability and utility while underscoring the need for stronger inclusion of Indigenous perspectives, greater socioeconomic accountability, and more attention to solutions and resilience. Respondents also emphasized that inclusive design, community engagement, and institutional support are critical for advancing climate justice integration and empowering educators in this work.
</summary>
<dc:date>2026-02-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>GraphHash: Graph Clustering Enables Parameter Efficiency in Recommender Systems</title>
<link href="https://hdl.handle.net/1721.1/165196" rel="alternate"/>
<author>
<name>Wu, Xinyi</name>
</author>
<author>
<name>Loveland, Donald</name>
</author>
<author>
<name>Chen, Runjin</name>
</author>
<author>
<name>Liu, Yozen</name>
</author>
<author>
<name>Chen, Xin</name>
</author>
<author>
<name>Neves, Leonardo</name>
</author>
<author>
<name>Jadbabaie, Ali</name>
</author>
<author>
<name>Ju, Mingxuan</name>
</author>
<author>
<name>Shah, Neil</name>
</author>
<author>
<name>Zhao, Tong</name>
</author>
<id>https://hdl.handle.net/1721.1/165196</id>
<updated>2026-04-23T03:15:18Z</updated>
<published>2025-04-22T00:00:00Z</published>
<summary type="text">GraphHash: Graph Clustering Enables Parameter Efficiency in Recommender Systems
Wu, Xinyi; Loveland, Donald; Chen, Runjin; Liu, Yozen; Chen, Xin; Neves, Leonardo; Jadbabaie, Ali; Ju, Mingxuan; Shah, Neil; Zhao, Tong
Deep recommender systems rely heavily on large embedding tables to handle high-cardinality categorical features such as user/item identifiers, and face significant memory constraints at scale. To tackle this challenge, hashing techniques are often employed to map multiple entities to the same embedding and thus reduce the size of the embedding tables. Concurrently, graph-based collaborative signals have emerged as powerful tools in recommender systems, yet their potential for optimizing embedding table reduction remains unexplored. This paper introduces GraphHash, the first graph-based approach that leverages modularity-based bipartite graph clustering on user-item interaction graphs to reduce embedding table sizes. We demonstrate that the modularity objective has a theoretical connection to message-passing, which provides a foundation for our method. By employing fast clustering algorithms, GraphHash serves as a computationally efficient proxy for message-passing during preprocessing and a plug-and-play graph-based alternative to traditional ID hashing. Extensive experiments show that GraphHash substantially outperforms diverse hashing baselines on both retrieval and click-through-rate prediction tasks. In particular, GraphHash achieves on average a 101.52% improvement in recall when reducing the embedding table size by more than 75%, highlighting the value of graph-based collaborative information for model reduction. Our code is available at https://github.com/snap-research/GraphHash.
WWW ’25, April 28-May 2, 2025, Sydney, NSW, Australia
</summary>
<dc:date>2025-04-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mindful young brains and minds: a systematic review of the neural correlates of mindfulness-based interventions in youth</title>
<link href="https://hdl.handle.net/1721.1/165195" rel="alternate"/>
<author>
<name>Jande, Jovan</name>
</author>
<author>
<name>Treves, Isaac N.</name>
</author>
<author>
<name>Ely, Samantha L.</name>
</author>
<author>
<name>Gowatch, Leah C.</name>
</author>
<author>
<name>Carpenter, Carmen</name>
</author>
<author>
<name>Shampine, MacKenna</name>
</author>
<author>
<name>Webb, Christian A.</name>
</author>
<author>
<name>Sacchet, Matthew D.</name>
</author>
<author>
<name>Gabrielli, John D. E.</name>
</author>
<author>
<name>Marusak, Hilary A.</name>
</author>
<id>https://hdl.handle.net/1721.1/165195</id>
<updated>2026-05-08T03:12:07Z</updated>
<published>2025-03-03T00:00:00Z</published>
<summary type="text">Mindful young brains and minds: a systematic review of the neural correlates of mindfulness-based interventions in youth
Jande, Jovan; Treves, Isaac N.; Ely, Samantha L.; Gowatch, Leah C.; Carpenter, Carmen; Shampine, MacKenna; Webb, Christian A.; Sacchet, Matthew D.; Gabrielli, John D. E.; Marusak, Hilary A.
This systematic narrative review examines neuroimaging studies that investigated the neural correlates of mindfulness-based interventions in youth (ages 0–18). We extracted 13 studies with a total of 467 participants aged 5–18 years from the MEDLINE database on February 21st, 2024. These studies included both typically developing youth and those at risk of developing or recovering from neuropsychiatric disorders. Most studies (76.9%) utilized a pre-post intervention design, with resting-state functional magnetic resonance imaging (fMRI) being the most common imaging modality (46.1%), followed by task-based fMRI (38.4%), diffusion-weighted imaging (15.4%), and structural MRI (7.7%). Despite substantial heterogeneity across study designs and findings, several consistent patterns emerged. Resting-state fMRI studies generally reported increased functional connectivity within and between networks, notably involving the salience network, frontoparietal network, and default mode network. Studies using diffusion-weighted imaging indicated enhancements in white matter microstructural properties, supporting overall connectivity improvements. Several task-based fMRI studies identified decreased activation of the default mode network and heightened reactivity of the salience network during or after mindfulness practice, with real-time neurofeedback further amplifying these effects. While preliminary, the reviewed studies suggest that mindfulness interventions may alter both functional and structural connectivity and activity in youth, potentially bolstering self-regulation and cognitive control. Nonetheless, the variability in methodologies and small sample sizes restricts the generalizability of these results. Future research should prioritize larger and more diverse samples, and standardized mindfulness-based interventions to deepen our understanding of the neural mechanisms underlying mindfulness-based interventions in youth and to optimize their efficacy.
</summary>
<dc:date>2025-03-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Theory Instead of Experiment (TIE): A Creator Valuation System at Tencent</title>
<link href="https://hdl.handle.net/1721.1/165194" rel="alternate"/>
<author>
<name>Huang, Lei</name>
</author>
<author>
<name>Zhang, Juanjuan</name>
</author>
<id>https://hdl.handle.net/1721.1/165194</id>
<updated>2026-05-08T03:13:19Z</updated>
<published>2025-08-03T00:00:00Z</published>
<summary type="text">Theory Instead of Experiment (TIE): A Creator Valuation System at Tencent
Huang, Lei; Zhang, Juanjuan
Experiments are informative but should be used judiciously as a costly resource. Well-constructed theory may serve as a substitute. We develop a ''Theory Instead of Experiment'' (TIE) framework and, in collaboration with Tencent, apply the framework to assess how much value (e.g., user clicks) each creator contributes to its WeChat Official Accounts Platform. This TIE application models content demand and supply upon the counterfactual departure of a creator. The demand model predicts user clicks based on estimated user preferences, while the supply model captures the platform's content distribution response. Together, they predict how each creator influences user engagement through the platform's content distribution strategy. We test the predictions of the TIE system with 168 experiments, each examining a different mix of creators and involving more than 9 million unique users. The TIE system and the experiments demonstrate a 97% correlation on the key performance metric (change in user clicks). Based on its low costs, high accuracy, granular output, and minimal latency, Tencent has deployed the TIE system as the default approach to creator valuation, assessing tens of millions of creators each day while avoiding a 2.5% user click loss associated with a typical experiment.
KDD ’25, Toronto, ON, Canada
</summary>
<dc:date>2025-08-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Seasonal Cycle of Atmospheric Heating and Temperature</title>
<link href="https://hdl.handle.net/1721.1/165193" rel="alternate"/>
<author>
<name>Donohoe, Aaron</name>
</author>
<author>
<name>Battisti, David S</name>
</author>
<id>https://hdl.handle.net/1721.1/165193</id>
<updated>2026-03-17T03:10:21Z</updated>
<published>2013-07-15T00:00:00Z</published>
<summary type="text">The Seasonal Cycle of Atmospheric Heating and Temperature
Donohoe, Aaron; Battisti, David S
The seasonal cycle of the heating of the atmosphere is divided into a component due to direct solar absorption in the atmosphere and a component due to the flux of energy from the surface to the atmosphere via latent, sensible, and radiative heat fluxes. Both observations and coupled climate models are analyzed. The vast majority of the seasonal heating of the northern extratropics (78% in the observations and 67% in the model average) is due to atmospheric shortwave absorption. In the southern extratropics, the seasonal heating of the atmosphere is entirely due to atmospheric shortwave absorption in both the observations and the models, and the surface heat flux opposes the seasonal heating of the atmosphere. The seasonal cycle of atmospheric temperature is surface amplified in the northern extratropics and nearly barotropic in the Southern Hemisphere; in both cases, the vertical profile of temperature reflects the source of the seasonal heating.&#13;
&#13;
In the northern extratropics, the seasonal cycle of atmospheric heating over land differs markedly from that over the ocean. Over the land, the surface energy fluxes complement the driving absorbed shortwave flux; over the ocean, they oppose the absorbed shortwave flux. This gives rise to large seasonal differences in the temperature of the atmosphere over land and ocean. Downgradient temperature advection by the mean westerly winds damps the seasonal cycle of heating of the atmosphere over the land and amplifies it over the ocean. The seasonal cycle in the zonal energy transport is 4.1 PW.&#13;
&#13;
Finally, the authors examine the change in the seasonal cycle of atmospheric heating in 11 models from phase 3 of the Coupled Model Intercomparison Project (CMIP3) due to a doubling of atmospheric carbon dioxide from preindustrial concentrations. The seasonal heating of the troposphere is everywhere enhanced by increased shortwave absorption by water vapor; it is reduced where sea ice has been replaced by ocean, which increases the effective heat storage reservoir of the climate system and thereby reduces the seasonal magnitude of energy fluxes between the surface and the atmosphere. As a result, the seasonal amplitude of temperature increases in the upper troposphere (where atmospheric shortwave absorption increases) and decreases at the surface (where the ice melts).
</summary>
<dc:date>2013-07-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mechanistic modeling explains the production dynamics of recombinant adeno-associated virus with the baculovirus expression vector system</title>
<link href="https://hdl.handle.net/1721.1/165192" rel="alternate"/>
<author>
<name>Destro, Francesco</name>
</author>
<author>
<name>Joseph, John</name>
</author>
<author>
<name>Srinivasan, Prasanna</name>
</author>
<author>
<name>Kanter, Joshua M</name>
</author>
<author>
<name>Neufeld, Caleb</name>
</author>
<author>
<name>Wolfrum, Jacqueline M</name>
</author>
<author>
<name>Barone, Paul W</name>
</author>
<author>
<name>Springs, Stacy L</name>
</author>
<author>
<name>Sinskey, Anthony J</name>
</author>
<author>
<name>Cecchini, Sylvain</name>
</author>
<author>
<name>Kotin, Robert M</name>
</author>
<author>
<name>Braatz, Richard D</name>
</author>
<id>https://hdl.handle.net/1721.1/165192</id>
<updated>2026-04-23T03:14:38Z</updated>
<published>2023-09-14T00:00:00Z</published>
<summary type="text">Mechanistic modeling explains the production dynamics of recombinant adeno-associated virus with the baculovirus expression vector system
Destro, Francesco; Joseph, John; Srinivasan, Prasanna; Kanter, Joshua M; Neufeld, Caleb; Wolfrum, Jacqueline M; Barone, Paul W; Springs, Stacy L; Sinskey, Anthony J; Cecchini, Sylvain; Kotin, Robert M; Braatz, Richard D
Current manufacturing processes for recombinant adeno-associated viruses (rAAVs) have less-than-desired yields and produce significant amounts of empty capsids. The increasing demand and the high cost of goods for rAAV-based gene therapies motivate development of more efficient manufacturing processes. Recently, the US Food and Drug Administration (FDA) approved the first rAAV-based gene therapy product manufactured in the baculovirus expression vector system (BEVS), a technology that demonstrated production of high titers of full capsids. This work presents a first mechanistic model describing the key extracellular and intracellular phenomena occurring during baculovirus infection and rAAV maturation in the BEVS. The model predictions are successfully validated for in-house and literature experimental measurements of the vector genome and of structural and non-structural proteins collected during rAAV manufacturing in the BEVS with the TwoBac and ThreeBac constructs. A model-based analysis of the process is carried out to identify the bottlenecks that limit full capsid formation. Vector genome amplification is found to be the limiting step for rAAV production in Sf9 cells using either the TwoBac or ThreeBac system. In turn, vector genome amplification is hindered by limiting Rep78 levels. Transgene and non-essential baculovirus protein expression in the insect cell during rAAV manufacturing also negatively influences the rAAV production yields.
</summary>
<dc:date>2023-09-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>PixBric: Precision Morphological Control of Pre-Stretched Fabrics Through Tessellated Primitive Geometries</title>
<link href="https://hdl.handle.net/1721.1/165191" rel="alternate"/>
<author>
<name>Youn, Hye Jun</name>
</author>
<author>
<name>Sara, Serena</name>
</author>
<author>
<name>Ishii, Hiroshi</name>
</author>
<id>https://hdl.handle.net/1721.1/165191</id>
<updated>2026-03-17T03:09:57Z</updated>
<published>2025-09-27T00:00:00Z</published>
<summary type="text">PixBric: Precision Morphological Control of Pre-Stretched Fabrics Through Tessellated Primitive Geometries
Youn, Hye Jun; Sara, Serena; Ishii, Hiroshi
3D printing patterns onto pre-stretched fabrics has emerged as a promising method for the rapid fabrication of self-shaping textiles. However, the influence of design parameters on morphing behavior remains insufficiently explored, often resulting in heuristic-driven decisions. This study introduces PixBric, a pixel-based textile methodology composed of primitive geometries designed to induce controlled morphing behaviors—such as undulation and bending—and mechanical properties including multistability. By parametrically adjusting geometry, thickness, and inter-pixel spacing, PixBric enables precise morphing outcomes. The framework includes a morphing simulation tool and a design chart linking geometric variables to deformation results. We also propose a streamlined fabrication protocol using biaxial pre-stretching with magnetic framing. These contributions establish a systematic design approach for the functional and interactive deployment of self-shaping textile structures.
UIST Adjunct ’25, Busan, Republic of Korea
</summary>
<dc:date>2025-09-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cellular anatomy of the mouse primary motor cortex</title>
<link href="https://hdl.handle.net/1721.1/165190" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/165190</id>
<updated>2026-05-08T03:13:48Z</updated>
<published>2021-10-06T00:00:00Z</published>
<summary type="text">Cellular anatomy of the mouse primary motor cortex
An essential step toward understanding brain function is to establish a structural framework with cellular resolution on which multi-scale datasets spanning molecules, cells, circuits and systems can be integrated and interpreted1. Here, as part of the collaborative Brain Initiative Cell Census Network (BICCN), we derive a comprehensive cell type-based anatomical description of one exemplar brain structure, the mouse primary motor cortex, upper limb area (MOp-ul). Using genetic and viral labelling, barcoded anatomy resolved by sequencing, single-neuron reconstruction, whole-brain imaging and cloud-based neuroinformatics tools, we delineated the MOp-ul in 3D and refined its sublaminar organization. We defined around two dozen projection neuron types in the MOp-ul and derived an input–output wiring diagram, which will facilitate future analyses of motor control circuitry across molecular, cellular and system levels. This work provides a roadmap towards a comprehensive cellular-resolution description of mammalian brain architecture.
</summary>
<dc:date>2021-10-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>The true, the good and the justified: Essays on epistemic normativity and value</title>
<link href="https://hdl.handle.net/1721.1/165189" rel="alternate"/>
<author>
<name>Gélineau, Félix-Antoine</name>
</author>
<id>https://hdl.handle.net/1721.1/165189</id>
<updated>2026-03-17T03:04:09Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">The true, the good and the justified: Essays on epistemic normativity and value
Gélineau, Félix-Antoine
This dissertation about the role that value—in particular, the value of truth—plays in the explanation of epistemic norms, the norms that should govern our belief-formation and belief-revision processes. It is a pervasive practice for us to assess one another’s beliefs, decrying some and commending others: we find something amiss in a belief formed by wishful thinking, and deem proper a belief arrived at via meticulous consideration of one’s evidence. It is natural to think that there is a close connection between what epistemic norms sanction, truth, and the fact that truth matters. In what sense is truth valuable? and what does that entail for how we should conceive of epistemic norms? These questions drive my dissertation. &#13;
&#13;
In chapter 1, “The true, the good and the justified”, I argue that the teleological conception of epistemic justification, the view that for a belief to be justified is for it to be formed in a way that is conducive to truth, is safe from the main objections it faces. These import assumptions about value that belong to ethical consequentialism; the epistemic teleologist need not and should not accept them.  “Epistemic value” is best understood as a ‘placeholder’, not as a term denoting value in any substantive sense. The upshot is that endorsing a teleological explanation of epistemic norms does not commit one to the idea that true beliefs ought to be promoted in the way the good ought to be promoted according to ethical consequentialists.&#13;
&#13;
In chapter 2, “Why be antisocial (about epistemic normativity)”, I examine whether epistemic normativity is grounded in the usefulness of truth for communities and argue that it is not. If what we ought to believe were to be explained in terms of the usefulness of truth for communities, we should expect our epistemic norms to be wildly different from what they are: they could condone trade-offs between true and false beliefs across a community when doing so would be useful for it; they would often fail to prescribe believing over other doxastic attitudes when the epistemic aims of the community would be equally well-served by either; finally, there is no way to answer in a satisfying manner the question of what isolated individuals should believe.&#13;
&#13;
In chapter 3, “What’s truth got to do with it?”, I develop an account of epistemic normativity that does justice to the idea that truth matters but avoids the shortcomings of other value-based accounts. I argue that, given any plausible account of the value of truth, the value of truth can explain some, but not all epistemic norms. The account of epistemic normativity that I present is pluralistic: I distinguish between substantive norms, which are explained by the value of truth, and basal norms, which stem from the good functioning of mechanisms of belief-formation and belief-revision, independently of the value of truth. This account is shown to be superior to other accounts discussed in the course of the dissertation.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ions in Electrically Conductive and Insulating Metal-Organic-Frameworks: Transport and Energy Storage</title>
<link href="https://hdl.handle.net/1721.1/165188" rel="alternate"/>
<author>
<name>Su, Alice Yue</name>
</author>
<id>https://hdl.handle.net/1721.1/165188</id>
<updated>2026-03-17T03:04:08Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Ions in Electrically Conductive and Insulating Metal-Organic-Frameworks: Transport and Energy Storage
Su, Alice Yue
Ion transport in metal-organic frameworks (MOFs) is attracting increasing attention since ions can be easily incorporated into porous MOF structures as guest species, promising a variety of possible applications. While electronically insulating but ionically conductive MOFs show great potential as solid electrolytes, the precise structure and tunability of MOFs also enables rational combination of electronic and ionic conductivity to create intrinsic mixed conductors. The combination of both conduction pathways is highly relevant for energy storage applications where ions interact with and insert into electronically conductive electrode active materials. This thesis first explores ion transport in an anionic MOF electrolyte, conducting mono- and divalent cations. Transport studies give insight into how MOF structure and ion-related variables impact ionic conductivity and activation energy. Studies on this material paint a picture that furthers our understanding of fundamental ion transport mechanism in MOF electrolytes. Incorporating electronic transport as an additional layer of complexity, new mixed proton-electron conductive two-dimensional MOFs based on aromatic azaborine ligands are synthesized. Their dual conductive nature is confirmed by separating the ionic and electronic contributions to the overall transport. Lastly, a family of triazatruxene-based two-dimensional electronically conductive MOFs are explored as pseudocapacitors. Here, the diffusion of ions inside the pore network as well as their interaction with MOF active sites depending on the interlayer spacing are investigated for their impact on capacitance.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Plurals of politeness and the morphosyntax of number</title>
<link href="https://hdl.handle.net/1721.1/165187" rel="alternate"/>
<author>
<name>Sinha, Yash</name>
</author>
<id>https://hdl.handle.net/1721.1/165187</id>
<updated>2026-03-17T03:04:13Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Plurals of politeness and the morphosyntax of number
Sinha, Yash
Many languages use plural pronouns to address (and refer to) single individuals with politeness or honorification. In some languages, these plurals of politeness (PoPs) show mixed agreement, triggering plural agreement on some agreement targets and singular on others. In this dissertation, I use PoPs to investigate the internal structure of DPs, focusing on how number features are represented within them. &#13;
 &#13;
Starting first with pronominal DPs, I adopt the view that these contain two phrases: (i) a noun phrase (NP) headed by a silent noun (Postal 1966 and subsequent work), and (ii) an index phrase (idxP), realized by the pronoun, which occupies the specifier of the DP and introduces a referential index (Jenks 2022; see also Choi 2014, Giusti 2015). My novel claim is that both the NP and the idxP bear their own number features. In most cases, this is not detectable because the number features of the NP and idxP match. I argue, however, that this is not the case for PoPs, which allows us to see that these two number features are in fact distinct. Specifically, I show that the agreement patterns of PoPs are best accounted for by treating them as consisting of a plural idxP with a singular NP (i.e., a plural pronoun with a silent singular noun). This analysis not only derives the mixed agreement of PoPs seen in some languages, but also explains certain cross-linguistic restrictions on the distribution of singular agreement with them. &#13;
 &#13;
I also extend this analysis to account for nominal PoPs, a type of nominal DP found in a subset of languages with pronominal PoPs. These nominal PoPs have the same semantics and the same agreement patterns as their pronominal counterparts, but crucially, the morphology on the noun in nominal PoPs is singular and not plural.  I argue that these similarities and differences can be explained by positing that idxPs are present in nominal DPs as well, but are not realized overtly. This analysis of nominal PoPs is shown to also be able to account for the DP-internal concord patterns seen with them.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Oddness under Discussion</title>
<link href="https://hdl.handle.net/1721.1/165186" rel="alternate"/>
<author>
<name>Hénot-Mortier, Adèle</name>
</author>
<id>https://hdl.handle.net/1721.1/165186</id>
<updated>2026-03-17T03:02:36Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Oddness under Discussion
Hénot-Mortier, Adèle
At a broad level, this dissertation's main claim is that many cases of pragmatic oddness do not stem from assertions alone, but rather from their interaction with the questions they implicitly  evoke. Felicitous assertions, must evoke felicitous questions. To operationalize this claim, a model of compositionally derived implicit question is devised, along with conditions of their well-formedness, drawing from familiar concepts in pragmatics, such as Redundancy and Relevance. This model assigns a central role to the degree of specificity, or granularity, conveyed by assertions.&#13;
&#13;
At a more narrow level, this dissertation argues that disjunctions and conditionals fundamentally differ in terms of the questions they evoke, and that this difference has direct consequences on the oddness/felicity profiles of sentences involving these operators. Disjunctions are shown to be prone to Redundancy issues, while conditionals are shown to be prone to Relevance issues. In other words, disjunctions and conditionals typically display distinct flavors of oddness. This is supported by three main classes of sentences. First, sentences that can be seen as equivalent, but which combine conditionals and disjunctions in distinct ways, display varying felicity profiles. Second, "pure" disjunctions and conditionals that can be seen as isomorphic, if not equivalent, display varying felicity profiles. Third, some differences between these disjunctions and conditionals remain when additional pragmatic phenomena, in particular scalar implicatures, are at play, and such differences shift in a way predicted by our approach.&#13;
&#13;
This dissertation therefore justifies the appeal to a more elaborate model of (implicit) questions, which, when fed to the pragmatic module, is characterized by a better empirical accuracy on challenging data, than previous model solely based on assertive content.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Characterizing and Mitigating Small-Diameter Tool Wear in Nickel-Based Superalloy Machining</title>
<link href="https://hdl.handle.net/1721.1/165185" rel="alternate"/>
<author>
<name>Brush, Alexander Sparry</name>
</author>
<id>https://hdl.handle.net/1721.1/165185</id>
<updated>2026-03-17T03:06:39Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Characterizing and Mitigating Small-Diameter Tool Wear in Nickel-Based Superalloy Machining
Brush, Alexander Sparry
This thesis investigates tool failure in the micromachining of single-crystalline René N4 turbine blades coated with ceramic thermal barrier layers. The work done in this thesis was promoted through a partnership between Massachusetts Institute of Technology (MIT) and GE Vernova. This thesis is complemented by the thesis written by Luke Placzek. Together these works offer a comprehensive case study in process analysis and manufacturing optimization.&#13;
This thesis begins with groundwork to document tool failure mechanisms and frequencies through photographic analysis. This was done alongside a study of historical data to analyze tool breakage frequency in the context of the turbine blade. Based on these insights, an Analysis of Variance (ANOVA) test followed by a Tukey’s Honestly Significant Difference (HSD) test identified statistically significant differences in tool breakage rates across machines and rows. A detailed study of tool wear progression was conducted to better understand how small-diameter endmills wear when machining the nickel-based superalloy René N4. Utilizing all these findings, an updated tool path was created to optimize tool life &#13;
This work lays the foundation for an improved machining strategy to reduce tool breakage in manufacturing turbine blades. Estimations show that the refined CAM strategies may reduce tool breakage by roughly 33 percent. Preliminary models estimate the implementation of the suggested improvements will save GE Vernova 2.5 million dollars per year.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Illumination-Robust Terrain Relative Navigation for Planetary Descent</title>
<link href="https://hdl.handle.net/1721.1/165184" rel="alternate"/>
<author>
<name>Mitchell, Adriana Macieira</name>
</author>
<id>https://hdl.handle.net/1721.1/165184</id>
<updated>2026-03-17T03:04:17Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Illumination-Robust Terrain Relative Navigation for Planetary Descent
Mitchell, Adriana Macieira
Missions to explore planetary bodies (e.g., Moon, Mars, Titan, Europa, Enceladus) through surface exploration have been planned for the next decades. These missions depend on autonomous optical navigation capabilities for safe entry, descent, and landing near key scientific areas of interest, potentially near hazardous terrain. Terrain Relative Navigation (TRN) enables autonomous precision landing by matching descent images to an a priori orbital map. However, performance degrades significantly when large differences in solar illumination exist between the map and descent imagery, particularly under high azimuth angle changes, due to terrain-induced shading inversions that break assumptions of photometric consistency in both frequency and intensity-based correlation methods. This thesis presents a set of methods to robustify TRN performance under large directional illumination changes, addressing three core challenges: understanding the failure of existing TRN methods, improving feature matching robustness to varying Sun angles, and generating reliable navigation maps from incomplete orbital imagery. First, the physical cause of correlation failure is characterized through a frequency-domain analysis of shading effects. Building on the azimuth impact matrix, which models the directional dependence of shading-induced phase reversals, this work applies it as a frequencydomain correction to frequency correlation to improve correlation peak accuracy across large solar azimuth differences. Second, a novel frequency-domain photometric correction method, Solar Orientation Layering via Frequency Image eXtraction (SOLFIX), is introduced to produce corrected map products aligned with expected descent conditions by layering spatial frequency content aligned with known solar angles from multi-resolution, multi-illumination orbital imagery. Third, a predictive illumination-aware map is developed to identify terrain regions likely to yield reliable correlations. This map integrates solar azimuth geometry, terrain aspect from low-resolution digital elevation models, and spatial frequency information to pre-filter unreliable areas of the map prior to localization. The proposed methods are validated on Mars orbital datasets, simulated terrain renderings, and NASA JPL’s field test imagery, each with Sun angle variations. Despite wide Sun angle differences, the proposed methods recover accurate localization where baseline TRN methods fail due to the bias from shading inversions caused by large solar azimuth differences. These contributions enable reliable optical navigation in scenarios where acquiring new orbital maps is infeasible and support future planetary missions operating under severe illumination constraints.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Verification Planning for Efficient Uncertainty Reduction of Space Science Systems</title>
<link href="https://hdl.handle.net/1721.1/165183" rel="alternate"/>
<author>
<name>Stenzel, June</name>
</author>
<id>https://hdl.handle.net/1721.1/165183</id>
<updated>2026-03-17T03:04:12Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Verification Planning for Efficient Uncertainty Reduction of Space Science Systems
Stenzel, June
Verification for a complex engineering system is essential for mitigating risks associated with quantitative uncertainty and ensuring confidence in the system’s performance. Verification planning is the problem of deciding how to allocate resources in this process, and verification for some systems may allocate more time and money to certain verification activities than is necessary to achieve a desired level of certainty. The need for efficient and effective verification is especially great for space systems and space science instruments, which are often subject to active cost and schedule constraints that make verification planning a challenge. This research proposes the Uncertainty Quantification Verification Planning Methodology (UQVM) for designing optimal-under-uncertainty verification plans in a systematic, quantitative, model-based way. Uncertainty quantification methods are used to model instrument performance, determine sources and magnitudes of parametric uncertainty, and perform sensitivity analysis. Stochastic models of potential verification activities are also developed with subject matter expertise, and are subjected to uncertainty quantification. A novel approach to optimal Bayesian experimental design (OBED) is developed to determine sets of verification activities that minimize effort and maximize certainty of system performance. A comprehensive systems engineering approach brings together these techniques of uncertainty quantification and experimental design methods, so that systems engineers can optimize design of AI&amp;T and V&amp;V campaigns with respect to programmatic cost and confidence of system performance, and can refine those plans as new verification data is obtained. UQVM is demonstrated for space science system case studies. A study of verification planning for CCD performance shows that optimally uncertainty-reducing plans within a cost cap can be identified that reduce the variance of predicted performance by 67%, and that iterative data-informed verification planning can reduce the variance of predicted performance by 96%. A retrospective analysis of the sensitivity verification for the Large Lenslet Array Magellan Spectrograph (LLAMAS) shows that optimized plans can reduce testbed time by 94% without a loss in uncertainty reduction, and that plans can be identified that perform better than historical plans with a confidence of greater than 90%. An early-phase analysis of precision control verification for the James Webb Space Telescope (JWST) shows that tests can be ranked in order of benefit-at-cost.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Molecular Mechanisms Defining and Driving Receptivity in Conversion of Fibroblasts to Motor Neurons</title>
<link href="https://hdl.handle.net/1721.1/165182" rel="alternate"/>
<author>
<name>Beitz, Adam M.</name>
</author>
<id>https://hdl.handle.net/1721.1/165182</id>
<updated>2026-03-17T03:04:11Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Molecular Mechanisms Defining and Driving Receptivity in Conversion of Fibroblasts to Motor Neurons
Beitz, Adam M.
Layers of regulation stabilize cellular identity and prevent aberrant cell-fate transitions. Cell fate conversion processes, such as the conversion of fibroblasts into motor neurons, attempt to induce a cell of one type to become a cell of another type by activating genes and gene networks associated with the desired final cell type. Cell fate conversion processes have the potential to revolutionize drug discovery and drive the development of novel cell-based therapies, but their translational potential is limited by poor conversion rates. Forced overexpression of lineage-specifying transcription factors is rarely sufficient to induce a complete change in cellular identity. We find that overexpression of known oncogenes can enhance a cell’s receptivity to conversion by increasing proliferation rates and increase conversion yields 100x, even when converting to a non-proliferative state. &#13;
In this thesis, we use the model system of mouse embryonic fibroblast to motor neuron conversion to determine how oncogenic mutants of HRAS and the tumor suppressor protein p53 induce a receptive cell state and enhance conversion. We find that cells that proliferate at high rates early in conversion attain the motor neuron identity at higher rates than cells that do not proliferate as much. We isolate cells that attain high rates of proliferation and define the subcellular properties of these conversion-receptive cells. Receptive cells display more compact chromatin as proliferation destabilizes chromatin structures generally, including those that reinforce the starting cell type identity. An increase in trimethylation of H3K27, a histone mark known to induce chromatin compaction and reduce transcriptional output, supports this this compaction and is associated with a global decrease in transcription rates. Finally, we make a counter-intuitive finding that the interaction between mutant and native p53 enhances conversion beyond its role in promoting proliferation that is dependent on the presence of native p53. The p53 mutant induces accumulation of native p53 in a subpopulation of cells. We developed a tool to track p53 levels in mouse embryonic fibroblasts in order to track p53 accumulation during conversion. By developing tools to isolate cells with different conversion-receptivity during oncogene-enhanced conversion, we can characterize the subcellular features that promote conversion. We expect future cell fate conversions may be engineered to systematically guide cells through a receptive state without oncogenes.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A cross-industry analysis using Q-Methodology for streamlining engineering workflow</title>
<link href="https://hdl.handle.net/1721.1/165181" rel="alternate"/>
<author>
<name>Gupta, Harshit</name>
</author>
<id>https://hdl.handle.net/1721.1/165181</id>
<updated>2026-03-17T03:06:48Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A cross-industry analysis using Q-Methodology for streamlining engineering workflow
Gupta, Harshit
Non-value added times arising from disconnected systems, legacy architecture, repeated iterations, product version mismatch, and manual processes remains one of the most persistent inefficiencies in modern design and manufacturing organizations which can be resolved by leveraging digital technology. Through this thesis, a framework has been laid out to understand and summarize the gaps among the various departments of an organization from the standpoint of information flow across the complete manufacturing workflow. The goal is to find gaps and pain points in the adoption of the ’Digital Thread’ with the objective of becoming software-driven enterprises. The objective is to identify opportunities to automate and optimize processes, and how information can be streamlined across departments. As a snapshot, the project investigates how digital transformation can bridge the gap between design and manufacturing, with a focus on concurrent engineering in high-mix, low-volume production, and high-volume, low-mix production environments. The research uses Q-methodology to understand how the perception of use of digital tools vary across industries and organizations, especially among vertically integrated and supplier dependent enterprises. Evaluation is done across different roles in an organization, ranging from executives and strategy teams to engineers, metrology specialists, and shop floor managers perceive current workflows, bottlenecks, and opportunities for improvement. The analysis reveals differences and similarities in interests and opinions to map the landscape of the current and growing needs across different industries and product portfolio. The results of the thesis can be used by participating teams to re-design workflow, communication and process plans and add flexibility through automation to the existing process. The thesis conclusion will also help PTC to understand the capabilities that their softwares are missing out on that can be integrated in their future iterations to help serve their customers better for faster and better product development. The shift towards software-driven manufacturing is the need of the hour with increasing stress on re-industrialization and the Thesis contributes to the current evolving discussion. The Thesis ends with a discussion on potential avenues for exploration gathered from participants through qualitative interviews that can be used as a roadmap to get a sense of future directions of the dynamic industry.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>User-Responsive Solutions for Cognitive Load Reduction in CAD Platforms</title>
<link href="https://hdl.handle.net/1721.1/165180" rel="alternate"/>
<author>
<name>Bai, Jane</name>
</author>
<id>https://hdl.handle.net/1721.1/165180</id>
<updated>2026-03-17T03:06:37Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">User-Responsive Solutions for Cognitive Load Reduction in CAD Platforms
Bai, Jane
Amid the evolution of cloud-based Computer-Aided Design (CAD) platforms, traditional educational approaches fail to address the diversity of cognitive obstacles that users across expertise levels and learning behaviors fac. This thesis investigates whether behavior-adaptive CAD tools can reduce friction as hypothesized by Cognitive Load Theory (CLT) while enhancing skill development in modern engineering environments.A two-phase mixed-methods approach was employed that combined large-scale behavioral persona identification with controlled user testing. TF-IDF and PCA on the results of an MIT-wide survey identified four distinct behavioral archetypes corresponding to unique tool usage patterns and learning preferences independent of technical proficiency. A/B testing of three behavior-adaptive custom tools which addressed workflow optimization, parametric knowledge retention, and contextual-aware passive modelling guidance was done with novice and advanced users. Command logging captured behavioral features and analysis discovered significant cognitive load reduction, improved workflow efficiency, and higher-retained skill development. NLP of post-session survey responses revealed deeper conceptual engagement. From these results, a three-stage model progressing from friction reduction through behavioral analytics to continuous personalization optimization was developed to inform business applications. The findings demonstrate that effective CAD education requires addressing individual behavioral patterns rather than traditionally uniform skill-based approaches. Behavior-adaptive tools enhance learning pathways and workflows by preserving user agency over creative and parametric decisions during modelling while reducing cognitive friction.  &#13;
&#13;
Keywords: Computer-Aided Design (CAD), Cognitive Load Theory (CLT), Behavioral Analytics, Behavior-Adaptive Learning, Engineering Education
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Structural and biochemical investigations of collagen-I trimerization</title>
<link href="https://hdl.handle.net/1721.1/165179" rel="alternate"/>
<author>
<name>Srinivasa, Sorin Asha</name>
</author>
<id>https://hdl.handle.net/1721.1/165179</id>
<updated>2026-03-17T03:02:52Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Structural and biochemical investigations of collagen-I trimerization
Srinivasa, Sorin Asha
The fibrillar collagens display a unique assembly process, with assembly initiating at the C-terminal propeptide (C-Pro) domain, a small globular domain that encodes vast amounts of information for chain selection, stoichiometry, and molecular recognition. The C-Pro domain is responsible for ensuring that strands that assemble together are of the same type of collagen, and, in the case of certain collagens, that the stoichiometry between strands is correct. In addition to being involved in assembly, the C-Pro domain has also been shown to play a significant role in collagen proteostasis. Quality control factors in the cell are able to specifically recognize misfolded C-Pro domains in the context of disease-causing mutations, demonstrating a vital role for C-Pro folding in this process. In chapter 2, we report progress towards the answer to a long-elusive question: why do certain collagens favor heterotrimeric assemblies even when homotrimeric assemblies are possible? We show progress towards a high-resolution structure of the collagen-I C-Pro 2:1 heterotrimer, and investigate the role of Ca2+ coordination in dictating assembly behavior and chain association. In chapter 3, we characterize the assembly and proteostasis defects associated with a set of C-Pro mutations that have been observed in patients with osteogenesis imperfecta. Our data reveal that, while some variants are effectively recognized by the cell’s quality control mechanisms and retained intracellularly, others are not and secrete at similar levels to the wild-type. We also demonstrate that even severely assembly-deficient C-Pro domains can escape quality control, likely resulting in severe or lethal disease. Collectively, the work presented here significantly advances our understanding of how collagen-I assembly occurs in healthy biological systems, and how it can be disrupted in disease, setting the stage for a variety of future investigations into this challenging system.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Smart Manufacturing of Desktop Fiber Extrusion Devices (FrED): Design Optimization and Digital Factory Implementation</title>
<link href="https://hdl.handle.net/1721.1/165178" rel="alternate"/>
<author>
<name>Ng, Yong</name>
</author>
<id>https://hdl.handle.net/1721.1/165178</id>
<updated>2026-03-17T03:06:49Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Smart Manufacturing of Desktop Fiber Extrusion Devices (FrED): Design Optimization and Digital Factory Implementation
Ng, Yong
This thesis presents the design and implementation of FrED Factory, a lab-scale, digitally integrated smart manufacturing environment developed to support scalable production and experiential learning in advanced manufacturing. Built around the Fiber Extrusion Device (FrED), a desktop analog to an industrial optical fiber draw tower. The project addresses both physical manufacturability and digital system coordination, aiming to simulate real-world Industry 4.0 practices in an educational setting.&#13;
To ensure repeatable and efficient production, key design components were optimized through tolerance analysis of laser cut acrylic frames. Standard Operating Procedures (SOPs) were developed to guide consistent execution of processes including 3D printing, laser cutting, procurement, and assembly. A structured Bill of Materials (BOM) was implemented to manage subassemblies and support real-time inventory tracking. On the digital front, the FrED Factory leverages Tulip, a no code Manufacturing Execution System (MES), to deploy dynamic work instructions, manage work orders, and monitor shopfloor performance. Tulip’s EdgeMC hardware was used to integrate Internet of Things (IoT) devices for machine status tracking. MQTT protocols were applied to capture 3D printer activity via OctoPrint, and current sensors were deployed to automatically log Quality Control (QC) station usage.&#13;
The result is a modular, scalable, and data-rich smart factory environment that enables students to gain hands-on experience with modern manufacturing systems. For educators, the FrED Factory provides a tangible platform for teaching digital manufacturing, while industry professionals can view it as a blueprint for applying lean, connected workflows in small-scale, high-mix production environments.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Integrated Materials for Ion Transport Management in Anion Exchange Membrane Electrolyzers</title>
<link href="https://hdl.handle.net/1721.1/165177" rel="alternate"/>
<author>
<name>Aamer, Zara</name>
</author>
<id>https://hdl.handle.net/1721.1/165177</id>
<updated>2026-03-17T03:06:47Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Integrated Materials for Ion Transport Management in Anion Exchange Membrane Electrolyzers
Aamer, Zara
Electrochemical CO₂ separation systems leveraging anion exchange membranes (AEMs) offer significant energetic advantages over traditional bipolar membrane electrodialysis (BPMED), but suffer from hydroxide crossover, which reduces current efficiency (CE) and system performance. This work explores the transport dynamics of carbonate and hydroxide ions in AEM systems and introduces a hybrid PES-AEM bilayer membrane architecture to mitigate hydroxide crossover while preserving sufficient CO₂ recovery. We demonstrate that the bilayer system achieves a reduced relative transport factor (R = 1.4) and enables up to 3.8x improvement in CE compared to conventional AEM systems at realistic capture conditions. Further analysis reveals that transport properties in the least conductive domain of a multi-membrane system dominate overall behavior, allowing non-selective, low-conductivity materials such as porous PES to reduce hydroxide crossover effects. This study outlines key membrane material parameters influencing relative ionic transport and highlights the potential of hybrid architectures to unlock energy-efficient CO₂ electrochemical regeneration for direct air capture (DAC) integration.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dimensioning Defects with Monocular Vision in Automated Optical Inspection</title>
<link href="https://hdl.handle.net/1721.1/165176" rel="alternate"/>
<author>
<name>Boyd, Logan</name>
</author>
<id>https://hdl.handle.net/1721.1/165176</id>
<updated>2026-03-17T03:06:45Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Dimensioning Defects with Monocular Vision in Automated Optical Inspection
Boyd, Logan
Automated optical inspection (AOI) systems are common tools for quality control in industrial manufacturing. AOI systems use robotic systems to load components, take images, and detect defects, often also characterizing the defects by size or class. Among various approaches to this machine vision, monocular systems are popular because they are cheap and simple to integrate while offering intuitive visualization. However, monocular vision alone lacks depth resolution and struggles to accurately dimension defects on 3D surfaces, especially if the imaged component’s pose is ambiguous. This paper presents a transparent, open-sourced, end-to-end image processing pipeline for dimensioning surface defects on industrial components using RGB images. The pipeline estimates component pose through a 2D-3D correspondence, segments defects with machine learning or image comparison techniques, then projects the component’s CAD mesh into the image to calculate the lengths of segmented defect instances. The pipeline was developed on a 3D-printed test object and demonstrated with each of three segmentation methods, yielding defect dimensions with average error between 0.6-1.2mm.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Advancing Manufacturing Readiness Reviews and Fiber Extrusion Processes: A Two-Sided Approach to Product Maturity in Optics and Sensing</title>
<link href="https://hdl.handle.net/1721.1/165175" rel="alternate"/>
<author>
<name>Groll, Matthew</name>
</author>
<id>https://hdl.handle.net/1721.1/165175</id>
<updated>2026-03-17T03:06:13Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Advancing Manufacturing Readiness Reviews and Fiber Extrusion Processes: A Two-Sided Approach to Product Maturity in Optics and Sensing
Groll, Matthew
This thesis engages with two important facets of the manufacturing discipline. The first half reflects on the ongoing efforts of the Charles Stark Draper Laboratory towards growing capabilities in production with an emphasis on standardization for responsible organizational scaling. Specific work is presented towards advancing the Manufacturing Readiness Review (MRR) process, informed by staff interviews, in the form of recommended approaches and template materials for technology leads to employ during future manufacturing review cycles. The second half covers more hands-on, active product and process development work for MIT’s Fiber Extrusion Device (FrED). Findings relate towards both improving the production process of the device as well as capabilities and observations of the extruded fiber. Inventory management recommendations are detailed for different production scenarios, and successful extrusion of acrylic, novel to the current studied capabilities of the FrED, is demonstrated. Observations on the resulting fiber’s optical properties are characterized along with a repeatable approach for doing so. While distinct, together these topics provide holistic insights into moving from concept to production.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Scaled Deployments of Seismic Penetrators to Measure&#13;
Stability of Antarctic Ice Shelves</title>
<link href="https://hdl.handle.net/1721.1/165174" rel="alternate"/>
<author>
<name>Steen, Parker</name>
</author>
<id>https://hdl.handle.net/1721.1/165174</id>
<updated>2026-03-17T03:06:41Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Scaled Deployments of Seismic Penetrators to Measure&#13;
Stability of Antarctic Ice Shelves
Steen, Parker
Ice shelves play a critical role in regulating the flow of Antarctic ice sheets and thereby global sea level rise. Recent ice shelf collapses are poorly understood due to a lack of seismic measurements of an ice shelf’s response to extreme environmental forces, such as ocean tides and tsunamis. Instrumenting ice shelves is a challenge due to transportation limitations, unpredictable weather, and dangerous crevassing. Air-dropped seismic penetrators have been developed in the Seismogeodetic Ice Penetrator (SGIP) project to alleviate manual installation pain points and access remote locations. The design of two SGIPs dropped into the Ross Ice Shelf in 2025 is reconsidered to determine how the design must and could evolve to be able to deploy seismic sensors at a scale necessary to achieve science goals. The power budget for a remotely dropped penetrator that transmits all recorded data is determined. Power architectures with solar panels or a wind turbine are optimized to minimize the total height of a penetrator powered by primary batteries by 23% with Iridium and 29% with Starlink. A Barrowman aerodynamic model is evaluated against empirical results. The model is calibrated and used to consider penetrator drops from fixed-wing aircraft, with results suggesting that horizontal belly drops are optimal but that vertical aft or side drops are possible. A unit cost curve is found for scaled production volumes. Finally, scaled deployments with LC-130H and Basler aircraft are considered to optimize the aircraft cost of seismic data, finding both aircraft to be viable, but the LC-130H more cost effective.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reachability Prediction and Optimal Path Planning for Autonomous Ocean Vehicles</title>
<link href="https://hdl.handle.net/1721.1/165173" rel="alternate"/>
<author>
<name>Mule, Ellen M.</name>
</author>
<id>https://hdl.handle.net/1721.1/165173</id>
<updated>2026-03-17T03:06:17Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Reachability Prediction and Optimal Path Planning for Autonomous Ocean Vehicles
Mule, Ellen M.
For intelligent ocean exploration and sustainable ocean utilization, the need for smart autonomous underwater vehicles (AUVs), surface craft, and small aircraft is rapidly increasing. Creating time-optimal navigation routes for these vehicles has wide-ranging applications, including ocean data collection, transportation and distribution of goods, naval operations, search and rescue, detecting marine pollution, ocean cleanup, conservation, and solar-wind-wave energy harvesting. In this thesis, we employ the Massachusetts Institute of Technology – Multidisciplinary Simulation, Estimation, and Assimilation Systems (MIT-MSEAS) time-optimal and hazard-time-optimal path planning theory and schemes based on exact Hamilton–Jacobi partial differential equations (PDEs) and Level Set methods. We apply this methodology to ocean gliders and floats during several real-time sea experiments—the Mini-Adaptive Sampling Test Run (MASTR) and Grand Adaptive Sampling Experiment (GRASE) in the Gulf of Mexico, and the New England Seamounts Acoustic (NESMA) experiment in the North Atlantic. Using the MIT-MSEAS multi-resolution ocean modeling and data assimilation system to provide deterministic and probabilistic ocean current forecasts, we compute time-reachable sets as well as time-optimal paths for a variety of ocean vehicle missions. The governing differential equations for reachability analysis and time-optimal path planning were numerically integrated in real time, forced by our large-ensemble ocean forecasts. We illustrated deterministic and probabilistic forward reachability analyses, glider recovery planning, time-optimal routing for gliders in distress, and planning of future glider and float deployments. Results show that the actual paths of gliders were contained within our reachable set forecasts and in accord with the dynamic reachability fronts. These forecasts were successfully employed for glider recovery and informed strategic decisions for future missions. Additionally, we demonstrated the ability to incorporate risk such as severe weather or vessel traffic into hazard-time-optimal path planning for simulated collaborative air-sea drone missions. Overall, the integration of data-driven multi-resolution ocean modeling with exact reachability theory and numerical schemes enables principled, operationally relevant path planning for diverse ocean missions.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analytical Model for Orbital Motion Under J₂</title>
<link href="https://hdl.handle.net/1721.1/165172" rel="alternate"/>
<author>
<name>Nedungadi Martinod, Marco Antonio</name>
</author>
<id>https://hdl.handle.net/1721.1/165172</id>
<updated>2026-03-17T03:06:13Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Analytical Model for Orbital Motion Under J₂
Nedungadi Martinod, Marco Antonio
As the number of operational satellites and debris objects in Earth orbit continues to accelerate, the ability to predict orbital trajectories with both accuracy and efficiency has become an indispensable capability. Numerical integration of the full Cartesian equations of motion offers generality but at high computational cost, while traditional analytical theories are efficient but often restricted by singularities in the classical orbital element set. Analytical formulations expressed in nonsingular elements can combine efficiency with global validity, and provide physical insight into the structure of orbital perturbations.&#13;
&#13;
This thesis develops a globally valid analytical model for orbital motion under the Earth's second zonal harmonic (J₂) in the modified equinoctial element (MEE) framework. The MEE set eliminates the singularities present in circular and equatorial orbits, allowing uniform treatment across all regimes. Two principal contributions are made. First, explicit first-order mean equations of motion are derived using a generalized averaging method applied to the J₂ disturbing function. The resulting system reduces to two planar rotations of the eccentricity and inclination vectors with constant rates, together with a secular drift in the true longitude. These equations reproduce Brouwer's classical secular results when mapped back to Keplerian elements, while retaining the nonsingular advantages of the MEE formulation. Second, closed-form mean--osculating transformations are obtained, enabling consistent recovery of short-period variations from the mean solution. These transformations allow a dual representation: efficient mean propagation combined with reconstruction of instantaneous orbital states.&#13;
&#13;
The analytical model is validated against high-fidelity Cartesian propagation across a set of representative orbit classes, including LEO, GEO, GTO, and Molniya orbits. In all cases, the mean element evolution predicted by the MEE-based theory shows close agreement with numerical integration. Over week-long propagation intervals, relative position errors remain small, while computational cost is substantially reduced compared to Cowell integration. These results establish the MEE-based analytical framework as both theoretically rigorous and practically effective, providing a foundation for accurate, efficient, and globally valid orbit prediction.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Characterization of Transonic Fan Response to Inlet Distortion</title>
<link href="https://hdl.handle.net/1721.1/165171" rel="alternate"/>
<author>
<name>Levy, Benjamin Adam</name>
</author>
<id>https://hdl.handle.net/1721.1/165171</id>
<updated>2026-03-17T03:06:04Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Characterization of Transonic Fan Response to Inlet Distortion
Levy, Benjamin Adam
This thesis seeks to characterize transonic fan response to three-dimensional inlet flow distortion, which is a challenge of business jet propulsor-airframe integration. The specific context is ensuring fan operability in crosswind while retaining high cruise efficiency. A body force approach is used with a pre-processing workflow that simplifies the inputs of the body force model. This enables rapid assessment of changes to the fan work distribution, a step towards achieving potential benefits of fan-inlet co-optimization. The workflow is used to explore the sensitivities of fan response to an applied non-uniformity, to fan work distribution, and to bulk swirl. Incidence, as a metric for evaluating distortion, is found to offer an improved assessment of fan operability trends compared to metrics that only depend on the stagnation pressure distribution. Such metrics are not found to capture sensitivities of fan response to increasing circumferential extent of the stagnation pressure defect. Sensitivity of the local response of the fan in the low stagnation pressure region to the radial work distribution are dominated by effects seen in 2D distortions: steeper local pressure ratio characteristics increase the attenuation of the stagnation pressure non-uniformity. However, such designs generate more severe stagnation pressure non-uniformities downstream of the rotor at other spanwise positions due to radial variations in the distortion pattern and rotor pressure rise. The effect of bulk swirl on the characteristic slope produces coupling of stagnation pressure and swirl, where combined counter-swirl and stagnation pressure distortion is found to produce more severe fan operability penalties than the superposition of each separate effect. The characterization of inlet distortion response contributed by this thesis is a necessary step in optimizing the propulsor inlet design with constraints on off-design operability.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Structured Bayesian Inference for Spatio-Temporal Systems with Applications in Remote Sensing</title>
<link href="https://hdl.handle.net/1721.1/165170" rel="alternate"/>
<author>
<name>Leung, Kelvin Man Yiu</name>
</author>
<id>https://hdl.handle.net/1721.1/165170</id>
<updated>2026-03-17T03:02:50Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Structured Bayesian Inference for Spatio-Temporal Systems with Applications in Remote Sensing
Leung, Kelvin Man Yiu
Satellite-based remote sensing observing systems are a key source of information for understanding Earth system dynamics. Bayesian inference provides a principled framework for retrieving physical parameters from satellite observations while quantifying uncertainty. However, the high dimensionality and spatio-temporal complexity of remote sensing problems pose major computational challenges for traditional inference methods. This thesis develops scalable algorithms for Bayesian inference for remote sensing systems by leveraging low-rank structure and sparse conditional dependence structure. The resulting methods enable accurate and efficient posterior characterization at scales relevant for modern satellite missions. The first theme of this thesis is identifying low-rank structure in problems where the scientific goal is to estimate a small number of quantities of interest (QoIs) that are a function of the unknown parameters. Using a gradient-based dimension reduction framework, we construct informative subspaces of the observation space that are tailored to specific QoIs. This framework is integrated with transport maps to enable simulation-based inference directly for the QoIs, without the need to recover the full posterior of the high-dimensional parameters. We demonstrate this approach on imaging spectroscopy data from NASA’s upcoming Surface Biology and Geology (SBG) mission and show that it achieves inference accuracy comparable to Markov chain Monte Carlo (MCMC) while requiring orders of magnitude less computational time. In addition, we examine the role of preconditioning in dimension reduction and demonstrate that the optimal choice of preconditioner depends on the nonlinearity of the forward model. Next, we explore how conditional independence structure can be used to improve the scalability of inference algorithms relevant to remote sensing systems. We first consider a single-pixel setting and exploit within-state conditional independence to build sparse transport maps for hyperspectral retrievals. These sparse maps reduce computation over standard nonGaussian inference methods while preserving accuracy. Extending beyond individual pixels, we develop an information filter that leverages spatio-temporal conditional independencies in satellite observing systems. By incorporating sparse inverse covariance structure into the filtering equations, we achieve significant improvements in both scalability and inference accuracy on data relevant to NASA’s OCO-2, EMIT, and SBG missions. Building on this structure, this thesis also explores extensions of large-scale spatio-temporal inference to the continuous non-Gaussian setting using measure transport. Drawing inspiration from belief propagation algorithms for Gaussian graphical models, we construct decomposed transport maps tailored to spatio-temporal graphical structures. These methods enable scalable inference while capturing non-Gaussian features of the posterior. We demonstrate their application to spatio-temporal systems, providing a viable framework for high-fidelity uncertainty quantification.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Towards Intelligent Psycho-Social Support to Augment Behavioral Health Management in Isolated Environments</title>
<link href="https://hdl.handle.net/1721.1/165169" rel="alternate"/>
<author>
<name>Nguyen, Golda</name>
</author>
<id>https://hdl.handle.net/1721.1/165169</id>
<updated>2026-03-17T03:02:19Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Towards Intelligent Psycho-Social Support to Augment Behavioral Health Management in Isolated Environments
Nguyen, Golda
Long-duration spaceflight requires astronauts to live in isolated, confined, and extreme environments while physically and socially separated from support systems for up to years at a time. This thesis explores how intelligent, autonomous tools may augment behavioral health management when real-time, Earth-based support is inaccessible in deep space. Such intelligent psycho-social support must be able to: 1) characterize individual risks, 2) assess health state accurately, and 3) deliver appropriate interventions or countermeasures. To augment these system functions, techniques from statistical modeling, natural language processing, and conversational AI are investigated across three case studies of isolation: wide-scale isolation during the COVID-19 pandemic, isolation in a space analog habitat, and social isolation in the general public. To explore risk characterization, statistical models were constructed on trait-based, behavioral, and social environment factors in relation to mood and anxiety state in isolation. Models of civilian risk under isolation were developed to inform automated risk characterization for future private astronauts. To explore augmenting psychological assessment, a feasibility analysis of natural language processing (NLP) for automated affect classification was conducted. Transformer-based NLP techniques were tested against lexicon-based and other machine learning (ML)-based techniques on affect classification of personal journal text from analog astronauts. Transformer-based models demonstrated improved detection of negative affect classes, but overall, lexicon-based models were still comparable to ML-based models. Finally, to explore augmenting countermeasures, a study of engagement and disclosure in AI-augmented reflection was conducted. In this study, participants shared more content volume and spent more time in a hybrid reflection condition (reflecting alone first before chatting with a prompted chatbot) than in separated conditions (journaling alone or reflecting only with the bot). Higher loneliness was associated with lower comfort and engagement, but behavioral benefits were similar across lonely and non-lonely users, suggesting further tailoring is needed to support isolated individuals. Through these case studies, this work presents a point of departure towards a vision of intelligent psychosocial support systems that are not meant to replace human connection, but to augment behavioral healthcare for individuals in isolated settings on Earth and in space.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Discovery and characterization of plateau potentials in&#13;
cortical neurons of awake mice</title>
<link href="https://hdl.handle.net/1721.1/165168" rel="alternate"/>
<author>
<name>Mojica Soto-Albors, Raúl E.</name>
</author>
<id>https://hdl.handle.net/1721.1/165168</id>
<updated>2026-03-17T03:04:06Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Discovery and characterization of plateau potentials in&#13;
cortical neurons of awake mice
Mojica Soto-Albors, Raúl E.
Plateau potentials are large calcium-dependent regenerative depolarizations that support burst firing and facilitate behavioral time scale synaptic plasticity (BTSP) in the hippocampus. Despite substantial progress in our understanding of these events in CA1, it remains unclear whether they occur in the neocortex and, if so, how do they manifest. To address this, we performed in vivo whole cell patch clamp recordings from layer (L) 2/3, L4, and L5 pyramidal neurons (PNs) in mouse primary visual cortex (V1) to produce the first systematic characterization of cortical plateau potentials. We established functional correlates of plateau potentials and evaluated their role in plasticity induction. First, we described the high prevalence of prolonged somatic depolarizations accompanied by high-frequency spikes (~105 Hz) in 43% of L5 PNs. Cortical plateau potentials closely resembled those previously described in the hippocampus, averaging ~27 mV in amplitude and ~60 ms in duration, with pronounced intraburst spike amplitude attenuation. Recordings obtained from L2/3 and L4 neurons revealed that cells in these layers do not generate plateaus, indicating a unique generation site in L5. Within L5, neurons exhibiting plateaus had lower input resistance than those that did not, suggesting plateaus may be specific to thick-tufted extratelencephalic (ET) PNs. We further described how the incidence of plateaus in L5 PNs was surprisingly not increased by visual stimulation. Intriguingly, their prevalence more than tripled during periods of behavioral arousal. Furthermore, plateau initiation was more likely during the rising phase of the extracellular theta rhythm (5-10 Hz) in V1, suggesting that cortical plateaus are modulated by internal state and network rhythms rather than visual stimuli alone. Finally, we investigated the role of cortical plateaus in plasticity by pairing a non-preferred stimulus with artificially evoked events. In contrast to the BTSP observed in CA1, spiking output remained consistent before and after pairing in V1. However, subthreshold responses indicated some synaptic depotentiation for the preferred stimulus, indicating that plateaus might be sufficient to alter synaptic weights, though in a different way than that demonstrated in hippocampus. Collectively, this work sheds light on an underexplored cortical output mechanism unique to L5 pyramidal neurons, positioning the plateau potential as a cell-type-specific phenomenon that may reshape sensory representations in the neocortex, with implications for cortical computation and biologically inspired learning rules in neural networks.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Comprehensive laboratory studies of organic oxidation across a range of photochemical ages and peroxy radical conditions</title>
<link href="https://hdl.handle.net/1721.1/165167" rel="alternate"/>
<author>
<name>Franco Deloya, Lesly Joanne</name>
</author>
<id>https://hdl.handle.net/1721.1/165167</id>
<updated>2026-03-17T03:04:07Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Comprehensive laboratory studies of organic oxidation across a range of photochemical ages and peroxy radical conditions
Franco Deloya, Lesly Joanne
Reactive organic carbon (ROC), defined as all volatile organic compounds (VOCs) and particulate organic carbon except methane, is the largest source of reactive emissions in the atmosphere and therefore plays a central role in atmospheric chemistry. After emission, ROC undergoes rapid chemical transformations driven by sunlight and atmospheric oxidants, forming peroxy radicals (RO₂) whose fate shapes the resulting oxidation products. This sequence of reactions, known as the ROC lifecycle, continues until ROC is removed via wet or dry deposition or fully oxidized to carbon dioxide (CO₂). Throughout its evolution, ROC contributes to the formation of ozone, particulate matter and CO₂, making its study necessary for understanding air quality and climate. While many aspects of this cycle have been explored through modeling, laboratory experiments, and field campaigns, our understanding of the ROC lifecycle remains incomplete due to the large number of compounds and its chemical complexity as it evolves in the atmosphere. This thesis investigates key aspects of the ROC lifecycle, focusing on its multigenerational chemical evolution over extended atmospheric aging and on how RO₂ chemistry shapes gas-phase species distributions. The first part investigates the multigenerational oxidation of ROC through a series of laboratory experiments designed to simulate atmospheric aging over extended timescales. These experiments make comprehensive measurements of both gas- and particle-phase carbon to gain a holistic understanding of ROC evolution in the atmosphere. While models have been used to simulate the full evolution of ROC, few experiments have constrained this process. These experiments provide the first direct constraints on the lifetime of ROC against heterogeneous oxidation, the formation of small and long-lived oxygenated VOCs, and the evolution of carbon properties (e.g. carbon number, carbon oxidation state) over multiweek atmospheric equivalent aging. We then compare these experimental results to long-term aging simulations using several chemical mechanisms that are implemented in models. Most chemical mechanisms achieve near-total carbon closure, however, they differ in species composition, ROC mineralization rates, and OH reactivity, especially at later stages of oxidation. These discrepancies highlight the gaps that remain in our understanding of the long-term chemical evolution of ROC. Finally, we conduct experiments that simulate a variety of RO₂ environments representative of atmospheric conditions. Past chamber experiments have primarily focused on RO₂ chemistry under extreme conditions that involve short bimolecular lifetimes and “low” or “high” NOₓ conditions. Our findings suggest that traditional metrics used to assess species distributions are insufficient to explain the full range of changes with shifts in the RO₂ environment. A more comprehensive accounting of all relevant RO₂ fates is necessary to explain gas-phase species composition, which in turn influences HOₓ and NOₓ cycling, ozone production and ultimately our understanding of secondary organic aerosol formation. Together, these results provide new constraints on the atmospheric evolution of ROC across a wide range of oxidative and photochemical conditions, improving our understanding of ROC and its role in air quality and climate.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Structural characterization and antibiotic development for&#13;
the Neisseria gonorrhoeae class Ia ribonucleotide reductase</title>
<link href="https://hdl.handle.net/1721.1/165166" rel="alternate"/>
<author>
<name>Dorfeuille, Andrew Leonard Jacques</name>
</author>
<id>https://hdl.handle.net/1721.1/165166</id>
<updated>2026-03-17T03:03:59Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Structural characterization and antibiotic development for&#13;
the Neisseria gonorrhoeae class Ia ribonucleotide reductase
Dorfeuille, Andrew Leonard Jacques
Ribonucleotide reductases (RNRs) are essential enzymes that catalyze the reduction of ribonucleotides to deoxyribonucleotides, a critical step in DNA biosynthesis and repair. Class Ia RNRs, found in eukaryotes and many aerobic bacteria including Escherichia coli (E. coli) and Neisseria gonorrhoeae (N. gonorrhoeae), are regulated by complex allosteric mechanisms that control enzymatic activity and substrate specificity. These enzymes function as α₂β₂ complexes, with the α₂ subunit housing regulatory sites and the β₂ subunit providing a catalytic radical. Proper regulation of RNR is vital for maintaining balanced dNTP pools and genomic integrity, making RNRs attractive targets for therapeutic intervention in both infectious disease and cancer. &#13;
This thesis examines the structural basis of specificity regulation in N. gonorrhoeae class Ia RNR using cryogenic electron microscopy (cryo-EM). Near atomic-resolution structures of the enzyme bound to four canonical substrate/specificity-effector pairs (CDP/dATP, UDP/dATP, GDP/TTP, and ADP/dGTP) reveal that effectors induce conformational changes in loop 2 of the α₂ subunit, which alter hydrogen bonding contacts in the active site, leading to preferential substrate binding. This mechanism is also conserved in the E. coli class Ia RNR, a close homolog. Cryo-EM maps also show weak, non-specific binding of a second nucleotide in the cone domain, likely reflecting artifacts of high nucleotide concentrations used in the cryo-EM experiments rather than physiological relevance.&#13;
Building on these findings, Chapter III investigates the potential interaction of the cyclic dinucleotide, c-diAMP, with the cone domains of E. coli and N. gonorrhoeae RNRs. We find that c-diAMP binds both enzymes with low micromolar affinity but does not alter the activity of either RNR to a large extent over the no-effector control. Although similar, the behavior of E. coli and N. gonorrhoeae RNRs are not identical, highlighting the potential of targeting the cone domain for species-specific RNR inhibition. This approach could enable the development of novel antibiotics, particularly needed for combatting antibiotic-resistant N. gonorrhoeae.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>From Sketch to CAD Code: Multimodal AI for Controllable Design Generation</title>
<link href="https://hdl.handle.net/1721.1/165165" rel="alternate"/>
<author>
<name>Man, King Yiu Brandon</name>
</author>
<id>https://hdl.handle.net/1721.1/165165</id>
<updated>2026-03-17T03:06:38Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">From Sketch to CAD Code: Multimodal AI for Controllable Design Generation
Man, King Yiu Brandon
Generative artificial intelligence (AI) has demonstrated transformative potential in creative and technical fields, yet its application to engineering design remains underdeveloped. Unlike domains where AI outputs can be directly consumed, engineering design demands integration across heterogeneous tools, multimodal data, and highly structured workflows. This thesis develops and evaluates AI-driven approaches for enabling copilot-style systems that assist engineers throughout the early stages of design, where decisions have the greatest impact on cost and performance. We identify and address three central challenges: the need for user control over abstract generative processes, the scarcity of high-quality engineering datasets, and the complexity of integrating AI into diverse design toolchains. Our first contribution is Sketch2Prototype, a multi-stage framework that transforms conceptual sketches into text, images, and manufacturable 3D meshes. Evaluated on a dataset of 1,087 sketches, the system produces more diverse and manufacturable prototypes than direct sketch-to-3D methods, while enabling iterative refinement through a controllable intermediate text stage. Our second contribution is VideoCAD, a synthetic dataset of over 41,000 annotated CAD modeling videos—up to twenty times longer in action horizon than prior UI agent datasets—capturing pixel-precise, long-horizon interactions in a professional CAD environment. We benchmark state-of-the-art behavior cloning models and large language models on VideoCAD, and introduce VideoCADFORMER, a transformer-based architecture that achieves superior performance on long-horizon CAD action prediction. Finally, we present VisionCAD, a fine-tuned Large Language Model (LLM) that constructs CAD Generation code from point cloud and image data, trained with a dataset of over two million image, point cloud, and CADQuery triplets. Together, these contributions demonstrate that generative AI, multimodal learning, and large-scale dataset generation can be combined to accelerate design exploration, improve manufacturability, and integrate seamlessly into engineering workflows. By addressing both the data and workflow bottlenecks, this work lays the foundation for AI copilots that enhance productivity, creativity, and precision in engineering design.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>FrED and the FrED Factory:&#13;
The MIT Approach to Designing a Smart Learning Factory</title>
<link href="https://hdl.handle.net/1721.1/165164" rel="alternate"/>
<author>
<name>Bradley, Russel</name>
</author>
<id>https://hdl.handle.net/1721.1/165164</id>
<updated>2026-03-17T03:06:07Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">FrED and the FrED Factory:&#13;
The MIT Approach to Designing a Smart Learning Factory
Bradley, Russel
It’s hard to learn manufacturing without being in a factory. Existing manufacturing education approaches—including educational kits, machine shops, and learning factories—often fail to capture the natural variability and the flow of products, processes, and people inherent in volume production, which drive the dynamics of real manufacturing systems. This paper/thesis talks about the design and development of the learning factory at MIT, also known as the FrED Factory. FrED Factory is a fully operational factory within campus that produces and delivers manufacturing education kits, Fiber Extrusion Device (FrED), while simultaneously delivering education. The combination of a learning factory producing learning products creates a unique ecosystem of manufacturing education. The FrED and the FrED Factory ecosystem have impacted learners with authentic learning experiences. Project-based learning experiences are delivered through groups of students working to develop FrED and the FrED Factory. The products of this development, the learning device and learning factory, amplify impact by serving as platforms for manufacturing education. The FrED and FrED Factory initiative has impacted learners from K-12, undergraduate, graduate, and professional education at MIT and beyond.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Generalizable Reinforcement Learning for Network Control</title>
<link href="https://hdl.handle.net/1721.1/165163" rel="alternate"/>
<author>
<name>Wigmore, Jerrod</name>
</author>
<id>https://hdl.handle.net/1721.1/165163</id>
<updated>2026-03-17T03:04:02Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Generalizable Reinforcement Learning for Network Control
Wigmore, Jerrod
This thesis confronts the critical generalization gap of Deep Reinforcement Learning (DRL) that hinders its effective application to queueing network control, where policies often fail to perform robustly in unseen topologies and traffic conditions upon deployment. We develop and analyze a suite of novel techniques that systematically embed structural domain knowledge and safety considerations to create more robust, efficient, and generalist learning agents. To improve generalization for a large class of queueing network control problems, we first introduce the Switch-Type Network (STN), a policy architecture that embeds the "switch-type" property common in classical control. This architectural prior improves sample efficiency and enables superior zero-shot generalization across varying network parameters. To address generalization across multi-hop networks, we then propose the Multi-Axis Graph Neural Network (MA-GNN), which augments the traditional inter-node message passing operations of a GNN with a novel intranode aggregation mechanism to capture complex, permutation-invariant dependencies between different traffic classes. This allows the MAGNN to learn and output high-level control coefficients that are effective for unseen network topologies. Recognizing the limitations of offline training, we shift to online adaptation and introduce an intervention-assisted DRL framework that guarantees stability in environments with unbounded state-spaces. By partitioning the state space and ceding control to a provably stable policy in high-congestion regions, this framework prevents catastrophic learning failures; its stability is proven via Lyapunov analysis, and foundational policy gradient theorems are extended to support the interventional setting. As a complementary case study in structured exploration, we also develop a Bayesian Hierarchical Bandit model and a Hierarchical Thompson Sampling (HTS) algorithm for the multi-band radio channel selection problem, which leverages environmental correlations to guide exploration and significantly reduce regret. Collectively, these contributions provide a comprehensive framework for creating DRL agents that are more robust and practical, demonstrating that embedding knowledge of policy structure, network topology, safety, and environmental correlations is a crucial step towards deploying autonomous agents in complex, real-world systems.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Characterizing CMOS Devices for Use in Future X-Ray Astrophysics Instruments</title>
<link href="https://hdl.handle.net/1721.1/165162" rel="alternate"/>
<author>
<name>Lupo, Jonathan</name>
</author>
<id>https://hdl.handle.net/1721.1/165162</id>
<updated>2026-03-17T03:06:05Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Characterizing CMOS Devices for Use in Future X-Ray Astrophysics Instruments
Lupo, Jonathan
Complementary Metal-Oxide-Semiconductor (CMOS) detectors and Charge-Coupled Devices (CCDs) are the two primary imaging technologies used in optical and X-ray detection. Both rely on pixel arrays that convert incoming photons into electrical charge but differ in readout architecture: CCDs shift charge across the array to a common output node, while CMOS devices incorporate amplifiers and readout circuitry at each pixel. CCDs have long been favored in astronomy for their high sensitivity, low noise, and deep depletion regions that enhance detection of higher-energy X-rays. However, they suffer from slow readout, high power demands, and susceptibility to radiation-induced charge transfer losses. CMOS detectors, in contrast, offer fast readout, low power consumption, and increased resilience in radiation environments, while enabling on-chip processing and high time resolution. These advantages make CMOS increasingly attractive for astrophysical applications, particularly in capturing faint, transient, or rapidly varying X-ray phenomena. This work evaluates the potential of two modified commercial CMOS detectors from Sony’s uEye SE series, the IMX226 and IMX662, for low- to intermediate-energy X-ray astrophysics. To enhance sensitivity, the optical windows were removed and, for the IMX226, the microlens array was eliminated to reduce absorption at low energies. The detectors were characterized at the MIT Kavli Institute X-ray Detector Lab, with performance evaluated in terms of X-ray response, readout noise, pixel-to-pixel gain variation, linearity, dark current, and contributions to overall energy resolution. Detector testing used X-ray emission lines from Polonium-250 and Iron-55 at 277 eV (C), 677 eV (F), 5.9 keV (MnKa), and 6.4 keV (MnKb). Measurements were performed in a vacuum chamber to minimize absorption, with optical linearity tested separately on an optical assembly setup using an integrating sphere. Both detectors showed strong potential as low-cost X-ray sensors, with energy resolutions approaching theoretical limits across key emission lines. Readout noise was low (2.28 e⁻ for IMX226, 3.54 e⁻ for IMX662), gain variation was minimal when measured (≤0.32%), and linearity remained stable with errors below 0.6% across high- and low-energy regimes. Dark current was negligible for the IMX662 and modest for the IMX226 (0.57 e⁻/pixel/sec). While readout noise and gain variation explain much of the measured energy resolution, additional unaccounted noise was observed, indicating that further optimization is required.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Local Competition, Number and Definitness</title>
<link href="https://hdl.handle.net/1721.1/165161" rel="alternate"/>
<author>
<name>Doron, Omri</name>
</author>
<id>https://hdl.handle.net/1721.1/165161</id>
<updated>2026-03-17T03:04:00Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Local Competition, Number and Definitness
Doron, Omri
In this dissertation, I explore the consequences of local competition inside the DP. I argue that various phenomena, including multiplicity inferences, homogeneity and definiteness, are best explained as locally-triggered scalar implicatures (SIs), when coupled with a view of SIs as presupposed (Bassi et al., 2021). I begin with the puzzle of the multiplicity inferences that arise from the use of plural indefinites, and show that deriving them as presupposed SIs naturally explains their felicity conditions and projection from embedded environments. I then argue that this competition-based system can account for the typology of number marking, and in fact providing us with a parsimonious theory of the crosslinguistic variation. A key result of this argument is that any language which allows for number marking on nouns has both the singular and the plural feature in its inventory. Finally, I suggest that local competition can also derive the inferences stemming from definite descriptions, including uniqueness, maximality and homogeneity.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Engineering DNA-based electrochemical diagnostics for translational applications</title>
<link href="https://hdl.handle.net/1721.1/165160" rel="alternate"/>
<author>
<name>Zhou, Xingcheng</name>
</author>
<id>https://hdl.handle.net/1721.1/165160</id>
<updated>2026-03-17T03:02:09Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Engineering DNA-based electrochemical diagnostics for translational applications
Zhou, Xingcheng
Low-resource settings are disproportionally burdened by infectious diseases due to limited access to early and accurate disease detection. Current gold standard methods, while effective, have high turnaround times and require costly infrastructure that is often impractical in these environments. Electrochemical biosensors are a promising alternative to due to their sensitivity, selectivity, low-cost, portability, and rapid response time. Among various biorecognition elements, DNA is particularly advantageous due to its versatility, comparable stability, and low production cost. However, there is a significant gap between laboratory proof-of-concept biosensors and commercially viable biosensors. The main challenges associated with commercializing DNA-based sensors include ineffective surface chemistries, limited target range, poor long-term stability, and high-cost, non-scalable manufacturing processes. In my thesis, I resolve these specific challenges by engineering DNA-based electrochemical biosensors systems to support their translation into commercially-viable products.&#13;
&#13;
First, I address ineffective surface chemistries for modifying screen-printed carbon electrodes, which are widely used for bioelectrochemical systems due to their low production cost and scalable manufacturing. However, effective modification with biomolecules remains a challenge as the main methods are either non-specific, require harsh reagents, or form weak monolayers. In this project, we develop a new facile, bio-orthogonal, and biocompatible surface chemistry for modifying screen-printed carbon electrodes. This approach enables the modification of electrode surfaces with DNA, whole cells, and proteins while maintaining bioactivity, supporting applications in both biosensing and clean energy.&#13;
&#13;
Next, I expand the range of targets for nucleic acid electrochemical detection. Electrochemical hybridization assays are sensitive and specific but are limited to very short nucleic acids. To resolves this, we develop a restriction enzyme-assisted electrochemical hybridization assay for improved nucleic acid detection. By incorporating target-specific restriction enzymes, I detect long nucleic acids, with performance dependent on the location of the cut site relative to the electrode surface. Thus, I establish guidelines for assay design to serve as a generalizable platform for robust electrochemical detection of long nucleic acids.&#13;
&#13;
Subsequently, I solve the challenge of long-term storage of sensors. Commercialization of DNA-based electrochemical biosensors is challenged by the stability and shelf-life of the DNA monolayer. There is no technology that allows storage of these sensors long term at room temperature at dry conditions. Here, we report a novel method to preserve DNA-based biosensor through a protective coating of polyvinyl alcohol. We show that the coating significantly improves the shelf life at both room temperature and elevated temperatures. We further demonstrate that the DNA is viable for downstream sensing. Our finding allows facilitates the commercialization of DNA-based biosensors as viable products.&#13;
&#13;
Finally, I design and fabricate a multiplexed electrochemical diagnostic device for respiratory viruses. While electrochemical biosensors are a major research area of diagnostics that can be utilized in low resource settings, effectively integrating assays into a seamless, inexpensive fluidic device is difficult. In this project, we first develop an assay to detect three types of respiratory viruses with sensitivity comparable to PCR. We then integrate the workflow into a shelf-stable diagnostic utilizing low-cost materials and a scalable manufacturing process. Our device offers a practical solution for device integration and future disease control for vulnerable populations.&#13;
&#13;
Overall, the methods developed in this work have the potential to support the transition of DNA-based electrochemical biosensor from academic research to commercially-viable products, paving the way for more FDA-approved diagnostics for early disease detection and advancing health equity in vulnerable populations.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Essays in Labor and Public Economics</title>
<link href="https://hdl.handle.net/1721.1/165159" rel="alternate"/>
<author>
<name>Martin Richmond, Jane Alexandra</name>
</author>
<id>https://hdl.handle.net/1721.1/165159</id>
<updated>2026-03-17T03:02:02Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Essays in Labor and Public Economics
Martin Richmond, Jane Alexandra
This dissertation examines how institutional policies and labor market frictions affect human capital formation, employment outcomes, and economic mobility across generations. The three essays explore distinct but interconnected aspects of how families and workers navigate constraints in education, childcare, and credentialing systems.&#13;
&#13;
The first essay is joint with Jonathan Rothbaum and investigates intergenerational spillovers from parental disability insurance receipt, using linked Census/IRS/SSA administrative data covering over 400,000 families. Using US administrative data, we link dependent children of SSDI recipients to their tax filings at age 25. We document a key descriptive fact, that the income of the child at age 25 is increasing in the age at which the parent receives their first SSDI transfer. We show that the probability that a child themselves receives an SSDI transfer as an adult is decreasing on the same margin; however, the pattern persists in the sample of children who do not receive such transfers. We build a model to show that these facts are consistent with a "lost-years" mechanism by which children whose parents become resource constrained earlier in life lose more years of costly intergenerational human capital investment. &#13;
&#13;
The second essay examines firms' decisions to remove bachelor's degree requirements from job postings and the subsequent hiring outcomes. By tracking within-role requirements over time, I identify instances where employers have explicitly removed bachelor's degree prerequisites from job advertisements. Linking these changes to aggregated resume data, I analyze whether individuals subsequently hired have different educational credentials, alternative qualifications, or experiential backgrounds. After the removal of degree requirements, the share of individuals hired with a degree falls by 1-3 p.p.  Concurrently, the share of people hired that report a non-degree credential is roughly unchanged, and the average years of labor market experience possessed by a candidate increases by 0.5 years. I detail a simple model explaining why firms may be motivated to remove degree requirements and substitute them with other screening mechanisms. To address potential endogeneity concerns, I employ an instrumental variable approach, exploiting staggered state-level policy shifts in the removal of degree requirements from public sector employment, which act as an information treatment to firms. I also show that these firm-level and state-level policy changes are broadly uncorrelated with local labor market conditions.&#13;
&#13;
The third essay is joint with Maya Bidanda and analyzes how childcare access affects parents' choice between wage employment and self-employment.  In this paper, we exploit variation in subsidized Pre-Kindergarten (Pre-K) to understand how access to childcare impacts mothers’ propensity for self-employment and formal work. We find that mothers of children who are too young for school are more likely to be self-employed and less likely to be in formal work than mothers of older children. We do not find similar trends for fathers. In addition, access to low-cost childcare increases the likelihood for formal work and decreases the likelihood of self-employment. This is evidence that mothers are pushed into self-employment due to frictions or barriers in formal work when childcare is not available. In the last part of the paper we discuss the impact of these patterns on mothers' lifetime income.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Machine Learning for Chemical Reactivity Prediction: Paradigms, Challenges, and Applications</title>
<link href="https://hdl.handle.net/1721.1/165158" rel="alternate"/>
<author>
<name>Raghavan, Priyanka</name>
</author>
<id>https://hdl.handle.net/1721.1/165158</id>
<updated>2026-03-17T03:02:30Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Machine Learning for Chemical Reactivity Prediction: Paradigms, Challenges, and Applications
Raghavan, Priyanka
The discovery of new therapeutic agents in the pharmaceutical industry is a complex, iterative process, often encapsulated by the Design-Make-Test-Analyze (DMTA) cycle, in which chemists ideate, synthesize, and assay compound targets of interest. A significant bottleneck in this cycle is the "Make" phase, where the synthesis of novel compounds can be time-consuming, resource-intensive, and fraught with unpredictable outcomes. Accurate prediction of chemical reactivity, particularly reaction yields and selectivities, is therefore paramount to accelerating drug discovery by enabling more efficient synthesis planning, reducing material waste, and guiding the design of more synthetically accessible molecules. As such, this dissertation explores the application of machine learning (ML) to address critical challenges in chemical reactivity prediction, with a particular focus on low-data regimes and the integration of predictive models into practical drug discovery workflows.&#13;
&#13;
This thesis begins by addressing the pervasive challenge of predicting reaction yields from sparse, literature-derived data. It details the assembly of a large dataset of substrate scopes and evaluates single-task and multi-task ML approaches, highlighting the limitations imposed by data scarcity and noise in real-world chemical literature. Recognizing these challenges, this thesis then provides recommendations for designing experimental datasets that are more conducive to robust machine learning, specifically offering considerations for curating data with the downstream modeling goal in mind.&#13;
&#13;
Building on these insights, this thesis then turns toward specific applications of machine learning in medicinal chemistry, first presenting a direct, impactful implementation of ML to enhance synthetic accessibility in drug design by predicting Suzuki cross-coupling yields from a large, historical pharmaceutical library dataset. ML models are shown to often outperform expert intuition and be successfully integrated into existing workflows for library design and rescue, significantly increasing synthesis efficiency. Finally, this thesis expands from chemical reactions to enzymatic reactions, detailing a computational and ML-based workflow for transaminase enzyme selection, to streamline the enantioselective synthesis of valuable chiral amine building blocks used in medicinal chemistry.&#13;
&#13;
Collectively, this thesis contributes to the growing field of machine learning in chemistry by addressing fundamental challenges in reactivity prediction, particularly in low-data and real-world industrial settings. It provides novel modeling paradigms for existing data and insights into the limitations of current approaches, offers a conceptual framework for improved data generation, and demonstrates the tangible benefits of integrating ML models into the DMTA pipeline. Throughout, the critical interplay between data quality, molecular representation, and model architecture and evaluation is emphasized, paving the way for more reliable and impactful predictive tools that can accelerate the pace of chemical discovery.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Property prediction with machine learning and ab initio methods for iridium photoactive complexes and metal-organic frameworks</title>
<link href="https://hdl.handle.net/1721.1/165157" rel="alternate"/>
<author>
<name>Terrones, Gianmarco Guin</name>
</author>
<id>https://hdl.handle.net/1721.1/165157</id>
<updated>2026-03-17T03:02:22Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Property prediction with machine learning and ab initio methods for iridium photoactive complexes and metal-organic frameworks
Terrones, Gianmarco Guin
Data-driven prediction of a chemical’s properties prior to synthesis or use can accelerate chemical discovery by increasing the probability of candidate suitability for the given application. In this thesis, data-driven models and complementary first-principles calculations have been used to study three types of chemistries: iridium photoactive complexes, metal-organic frameworks, and reactions for azetidine synthesis. Iridium photoactive complexes are commonly used in OLED lighting, photocatalysis, and bioimaging due to their unique phosphorescent properties and triplet excited state population. Metal-organic frameworks are studied for heterogeneous catalysis and gas separations and storage due to their tunable metal environments and porous structures. Azetidine-containing molecules have potential for use as pharmaceuticals due to their high stability and good pharmacokinetics. However, despite their advantageous properties, challenges remain in designing these chemistries and informing this design with computation. The excited state properties of iridium complexes are challenging and costly to predict through first-principles methods. Similarly, stability issues often affect metal-organic frameworks, yet these cannot be efficiently modeled by physics-based routines. Lastly, synthetic approaches toward azetidine synthesis are limited, and computational study of novel synthetic approaches to identify desirable reactant characteristics would benefit the future scope of azetidine products.&#13;
&#13;
The models developed in this thesis have proven to be complementary tools to first-principles approaches, and have major benefits in their speed of application and ability to train directly on experimental data for properties that challenge methods like DFT. The models are applied to screen chemical space for promising candidates through consideration of hypothetical, not-yet-synthesized iridium complexes and metal-organic frameworks generated through component combination of existing structures. The machine learning models are also used to derive structure-property relationships through feature importance analysis, for example identifying qualities of iridium photoactive complexes that impart longer or shorter excited state lifetime. In addition to model generation, work in this thesis has covered code development of a software package for molecule structure generation, modification, and fingerprinting, and also development of intuitive web interfaces for easy use of data-driven models. It is expected that the tools developed in this thesis will both allow for a greater understanding of iridium complexes, metal-organic frameworks, and azetidine synthesis, and enable low-cost exploration of chemical space for novel material selection.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Spacecraft Autonomy through Computer Vision and Onboard Planning</title>
<link href="https://hdl.handle.net/1721.1/165156" rel="alternate"/>
<author>
<name>Kacker, Shreeyam</name>
</author>
<id>https://hdl.handle.net/1721.1/165156</id>
<updated>2026-03-17T03:03:57Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Spacecraft Autonomy through Computer Vision and Onboard Planning
Kacker, Shreeyam
Earth observation (EO) from satellite platforms has experienced widespread growth since the commercialization and widespread availability of data, and has had large impacts on applications such as agriculture, disaster monitoring, and defense and intelligence. Observing unpredictable phenomena is still challenging for EO missions due to long lead times from scheduling, uplinking, and executing the image capture onboard the spacecraft. This delay between planning and execution means that conditions can change in between them, causing a task to become unobservable and missed in the meantime, for example due to cloud cover obscuring a target. Dynamic tasking (DT) is a mission concept that aims to mitigate this unpredictability by moving autonomy onboard the spacecraft and quickly reacting to conditions as observed, using several potential perception sources. In this work, we consider DT as applied to a tasked Earth-observing satellite, whose goal is to image Earth’s landmass at predefined targets. The considered goal in this work for DT and onboard autonomy is avoidance of cloud cover, which can cause up to 66% of imaging tasks to be occluded, but factoring real-world constraints on operationalization and onboard edge computing. Instead of using end-to-end learned methods, we build upon existing work on spacecraft scheduling, incorporating a mixed-integer linear program (MILP) scheduler as the primary scheduling algorithm. Rather than directly incorporating DT into a global problem, we instead develop a set of heuristics which can estimate the utility of lookahead actions. We construct these heuristics from two directions: one from a simplified and constrained version of the scheduling problem with order statistics, and a second using a convolutional neural network with large amounts of synthetically generated data. We also consider DT using information from meteorological satellites in geostationary Earth orbit (GEO), parameterizing information delay rather than performing detailed analysis of data pipelines. In cases where all tasks are equally valued, all DT cases tested, including both meteorological and vision cases, outperform the conventional scheduler across all trials, ranging between 40% and 100% increase in total schedule utility based on cloud-free captures, depending on the DT method used. In cases where tasks have Pareto-distributed utility, the gap between the omniscient and conventional schedule shrinks drastically, to within 4% of total utility, and only a single DT method outperforms the conventional schedule consistently, as the environment becomes significantly more challenging due to asymmetric upside and downside risk. We also present methods by which to fractionate global state such that data can be efficiently stored and updated across a satellite constellation, allowing these heuristics to continue working across the constellation with minimal modification.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Large-Scale Multi-Robot Spatial Perception</title>
<link href="https://hdl.handle.net/1721.1/165155" rel="alternate"/>
<author>
<name>Chang, Yun</name>
</author>
<id>https://hdl.handle.net/1721.1/165155</id>
<updated>2026-03-17T03:02:14Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Large-Scale Multi-Robot Spatial Perception
Chang, Yun
This thesis addresses the challenge of scalable and robust multi-robot spatial perception, with the goal of supporting autonomous task execution in large-scale environments. The work focuses on two core issues: scaling to large, complex environments, and incorporating highlevel scene understanding to enable autonomy for complex tasks. Current multi-robot systems typically focus on geometric reconstruction for navigation, but often fall short in providing the scene understanding needed for complex decision-making and task execution in real-world environments. Conversely, many recent demonstrations of autonomous task execution are limited to small, controlled environments, with few methods addressing scalability to larger scenes. This work bridges this gap by integrating multi-robot simultaneous localization and mapping (SLAM) with spatial perception in order to support downstream autonomy for complex tasks. We begin by introducing methods to enhance the robustness and efficiency of loop closure detection in centralized multi-robot SLAM, focusing on prioritizing loop closures and mitigating the impact of incorrect loop closures in large-scale environments. We then present the first fully distributed metric-semantic SLAM system for multi-robot teams, which supports real-time semantic mapping and enables large-scale deployments with up to 8 robots and 8 kilometers of traversal. To improve reasoning across robot teams, we extend this work to 3D scene graphs, proposing a framework for collaboratively building and maintaining a shared multi-robot scene graph online. Additionally, we introduce algorithms for task-oriented compression of 3D scene graphs to support communication across robots under bandwidth constraints. Finally, we explore open-set scene understanding made possible by advances in visual-language models and highlight the need for task-driven mapping. Building on this, we propose a novel framework for grounding high-level language commands into scene graphs, enabling robots to decompose high-level tasks into executable subtasks while focusing on task-relevant components of the environment. The contributions of this thesis are validated through experimental evaluations in extreme environments and real-world deployments, where multi-robot teams operate in large-scale settings. These experiments tackle a broad range of tasks, from navigation and object search to executing high-level language commands (e.g., “clean the room”). Our contributions advance multi-robot large-scale spatial perception and have the potential to impact real-world applications such as exploration, service robotics, and search and rescue, where autonomous multi-robot teams are essential for performing complex tasks in large environments.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Locality: a case study from Äiwoo</title>
<link href="https://hdl.handle.net/1721.1/165154" rel="alternate"/>
<author>
<name>Roversi, Giovanni</name>
</author>
<id>https://hdl.handle.net/1721.1/165154</id>
<updated>2026-03-17T03:03:42Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Locality: a case study from Äiwoo
Roversi, Giovanni
This thesis explores issues in the syntax of Äiwoo, an understudied Oceanic language from the Solomon Islands. This language showcases an intricate system of clausal alternations, where several parameters vary independently from each other: verbal morphology, word order, and possibilities of Ā-extraction (i.e., which argument(s) may or may not be extracted). As the title indicates, this thesis is set up as a case study, in a sort of “learn by doing” fashion. I attempt to build a descriptively and explanatory adequate formal model of the clausal alternation system in Äiwoo, within a Minimalist framework. By doing so, I examine what a theory of grammar must look like for the model to work as intended. Building such a model of Äiwoo teaches us something about a number of central issues in syntactic theory such as the locality of movement, the A /Ā-distinction, and the syntax of Austronesian languages specifically. I show that conjoining van Urk’s (2015) theory of the A /Ā-distinction and to the independent idea of featurally relativized probes (Béjar 2003), we predict the existence of “non-local A-movement”, that is, movement with the binding-theoretical properties of A-movement that nonetheless does not obey strict DPlocality, and crucially without the need of invoking the notion of “mixed A /Ā-movement”. I show that two instances of this predicted kind of movement are attested in the Äiwoo clause: movement to both spec,TP and spec,CP can target either the subject or – nonlocally – the object, depending on their features. I also propose that features assigned by a probe to a goal (“goal-flagging”; Deal to appear, Clem &amp; Deal 2024) can be further manipulated by the syntax, being searched for by a higher probe. Further, Äiwoo shows an interesting instantiation of the Austronesian “pivot-only” Āextraction restriction, in that it comes with a series of exceptions. I argue that in Äiwoo, this restriction is caused by an Ā-intervention effect, contra analyses of this phenomenon in other Austronesian languages based on phasehood (Rackowski &amp; Richards 2005, Erlewine &amp; C. Lim 2023, Hsieh 2025, a.o.) or DP-intervention (Aldridge 2004, 2008, a.o.). Notably, as soon as the highest DP in a clause does not carry Ā-features, the restriction vanishes, thus allowing for the “exceptional” extraction of lower arguments.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rapid In-Space Assembly and Manufacturing of Large Reticulated Truss Structures</title>
<link href="https://hdl.handle.net/1721.1/165153" rel="alternate"/>
<author>
<name>Bhundiya, Harsh G.</name>
</author>
<id>https://hdl.handle.net/1721.1/165153</id>
<updated>2026-03-17T03:02:17Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Rapid In-Space Assembly and Manufacturing of Large Reticulated Truss Structures
Bhundiya, Harsh G.
Modern deployable space structures have enabled spectacular missions like the James Webb Space Telescope, but they are constrained by the rocket fairing and a tradeoff between deployed size and structural precision that limits their use for future communications and astronomy applications. In-space assembly and manufacturing (ISAM), i.e., the construction of structures in the space environment, offers an approach to overcome these issues and enable novel missions both on orbit and on planetary surfaces. Structures constructed in space can be optimized for loads in space, achieve higher packaging ratios, and increase mission flexibility. Given these benefits and decreasing launch costs from modern reusable rockets, there is a resurgence of interest in ISAM from academic, commercial, and governmental entities. However, current ISAM concepts are hindered by inefficient construction processes with high size, weight, and power requirements and a lack of systems-level design of spacecraft and construction processes. This thesis aims to address these challenges to enable energy-efficient, rapid ISAM of large space structures. The first contribution is an analysis of the fabrication time of large truss structures, considering the constraints of spacecraft power, attitude control authority, and avoidance of flexural vibrations. The analysis shows that angular momentum storage of the spacecraft and flexibility of the structure are dominant constraints on fabrication time of gridshell geometries with diameters over 60 m, while the available power and control torque limit fabrication time for diameters under 60 m. This trade study provides quantitative estimates of the total fabrication time, e.g., five spacecraft constructing a 200 m diameter gridshell in five days, and highlights design tradeoffs to enable rapid ISAM, including using multiple spacecraft and varying the feedstock material based on the structure size. Motivated by the long fabrication timescales, the second contribution is an understanding of spacecraft attitude dynamics with changes in mass properties and environmental disturbances during construction. In particular, variable-mass rigid body dynamics are used to understand the feasibility of gravity gradient capture, a passive approach that exploits the gravity gradient disturbance during ISAM. The concept is illustrated with two case studies on the construction of truss structures, a 2D triangle unit cell and a 3D curved gridshell, by spacecraft in circular orbits. Based on the time reversibility of the equations of motion, initial conditions are computed that result in gravity gradient capture by solving the equations backward in time, considering the changes in mass properties from the prescribed construction sequence. The analysis highlights both the feasibility of passive gravity gradient capture and the sensitivity of initial conditions to small perturbations. It is found that deploying a gravity gradient boom before the start of the construction sequence can decrease this initial condition sensitivity by an order of magnitude, and more generally, designing an ISAM process to maintain the minimum principal inertia axis in the direction of the orbit radius vector can facilitate the robust passive gravity gradient capture of large structures. Finally, to aid the design of attitude control systems for ISAM spacecraft, ground experiments are presented to understand the attitude dynamics during Bend-Forming, a candidate deformation process for fabricating truss structures. The experimental results reveal the effect of metal springback during construction, which causes flexible vibrations and coupled motion of both the truss and spacecraft. Additionally, experiments with closed-loop, thruster-based position and attitude control highlight the possibility of control-structure interactions during construction, due to the decreasing natural frequency of the truss structure. Together, these contributions provide a framework for the efficient design of future ISAM spacecraft and construction processes to enable the next generation of space structures.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Space Optical Interferometry for High-Resolution Coherent Imaging of Astronomical Objects</title>
<link href="https://hdl.handle.net/1721.1/165152" rel="alternate"/>
<author>
<name>Black, Mason R.</name>
</author>
<id>https://hdl.handle.net/1721.1/165152</id>
<updated>2026-03-17T03:03:45Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Space Optical Interferometry for High-Resolution Coherent Imaging of Astronomical Objects
Black, Mason R.
The hunt for Earth-like exoplanets is one of the great scientific endeavors of the 21st century. To date, the characterization of known exoplanets with instruments like JWST has been spatially unresolved—we can study atmospheric constituents via spectroscopy, but we cannot see continents, synoptic weather, or the geographic distribution of potential spectral biosignatures. The diffraction limit dictates that an optical aperture with sufficient angular resolution to resolve planetary scale features from the vantage point of our solar system would be prohibitively immense—hundreds to thousands of kilometers in diameter at visible wavelengths. Optical interferometry offers perhaps the only path to the required angular resolution by interfering light from multiple telescopes, or sub-apertures, providing Fourier components at a resolution corresponding to the sub-aperture separation. In recent decades, ground-based interferometry has made major strides in sensitivity by calibrating for atmosphere-induced piston errors to enable long coherent integration times. In addition to high-resolution astrometry, these sensitivity gains have allowed for milliarcsecond-scale imaging of bright astronomical objects. Still, optical interferometry from the Earth’s surface faces many fundamental performance limitations, and a space-based system would allow for the study of much dimmer targets at higher diffraction-limited resolutions, taking us a step closer to one day mapping exo-Earths. With recent advances in satellite miniaturization and lower cost-to-orbit, multiple groups have proposed new designs for a first demonstration mission, but no astronomical interferometer has yet flown in space. This work investigates the expected performance of first- and second-generation space optical interferometer concepts for astronomical imaging, focusing on maturing the technology that will be needed to push sensitivity and resolution beyond what is currently possible from the ground. The first mission envisioned is a formation flying pathfinder comprising three CubeSats, aiming to demonstrate the first measurements of interference fringes from starlight collected by separated space telescopes. This feat will require sub-wavelength matching of the optical path lengths traveled by the starlight to maintain the mutual coherence, which is achieved using rapid measurements of the interference fringe itself as a source of path length feedback. The performance of this fringe tracking is modeled via a time-domain control simulation accounting for the micro-vibration disturbance environment that would be expected on a CubeSat platform using reaction wheels for attitude control, which could induce up to 5 µm in optical path length noise and several arcseconds in optical alignment errors if left uncorrected. Also considered are the optical losses and noise sources associated with photon arrival statistics and detection as well as the beam pointing jitter. Simulation results indicate that such a mission would be able to stabilize interference fringes on at least the fifty brightest stars to better than 45 nm even under pessimistic disturbance assumptions, which would be sufficient to demonstrate the feasibility of space interferometry for a subsequent larger mission. The second mission concept analyzed aims to push the limits of faint-object interferometry from space by implementing a dual-feed beam combiner for fringe stabilization and phase referencing using bright off-axis guide stars. A three-telescope interferometer is assessed in its ability to map the surfaces of recently discovered dwarf planets in the outer solar system from a sun-synchronous Earth orbit. The population of stars usable as an interferometric phase reference is found to be within the off-axis field of view permitted by a 1-meter differential optical delay line, aiding image reconstruction via use of the Fourier phase referenced to a fixed point in the sky. Bayesian statistical imaging algorithms are employed to demonstrate recovery of an image from simulated noisy measurements of an 18th magnitude rotating object 37 millarcseconds in diameter, but results indicate that to do this with the integration times permitted by the chosen orbital formation would require approximately Hubble-sized telescope apertures. Potential alternative operational strategies to enable longer integration times with more modest apertures are discussed. Informed by the simulation results, recommendations are presented for near-term technology development in support of space interferometry.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Vision-Language Models for Engineering Design:&#13;
From Technical Documentation Benchmarking to CAD&#13;
Generation</title>
<link href="https://hdl.handle.net/1721.1/165151" rel="alternate"/>
<author>
<name>Doris, Annie Clare</name>
</author>
<id>https://hdl.handle.net/1721.1/165151</id>
<updated>2026-03-17T03:05:57Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Vision-Language Models for Engineering Design:&#13;
From Technical Documentation Benchmarking to CAD&#13;
Generation
Doris, Annie Clare
Engineering product development is slowed by two bottlenecks: interpreting technical requirements and producing accurate, editable computer-aided design (CAD) models. This thesis evaluates and advances vision-language models (VLMs) – large-scale foundation models that process both text and images – to support engineers in these time-consuming tasks. While benchmarks exist for evaluating VLM performance in areas such as medical imaging, optical character recognition, and robotics, benchmarks for engineering design tasks remain scarce. We develop DesignQA, which remedies this problem, by combining visual data, textual design requirements, CAD images, and engineering drawings in a benchmark. It enables us to rigorously quantify the VLMs’ abilities to understand and apply engineering requirements in technical documentation. Developed with a focus on real-world engineering challenges, DesignQA uniquely combines visual data – including textual design requirements, CAD images, and engineering drawings – derived from the Formula SAE student competition. The benchmark features automatic evaluation metrics and is divided into segments – Rule Comprehension, Rule Compliance, and Rule Extraction – based on tasks that engineers perform when designing according to requirements. We evaluate state-of-the-art models (at the time of writing) like GPT-4o, GPT-4, Claude-Opus, Gemini-1.0, and LLaVA-1.5 against the benchmark. Our study uncovers the existing gaps in VLMs’ abilities to interpret complex engineering documentation, including the inability to reliably retrieve relevant rules from the Formula SAE documentation and challenges in analyzing engineering drawings. These findings underscore the need for VLMs that can better handle the multifaceted questions characteristic of design according to technical documentation. After establishing an engineering-design-specific benchmark, we investigate whether additional training can improve VLM performance on engineering tasks. In particular, we address CAD generation from images, a problem motivated by scenarios such as sketch-toCAD workflows, recovery of lost files, or cases where only an image is available due to privacy concerns. While recent developments in AI-driven CAD generation show promise, existing models are limited by incomplete representations of CAD operations, an inability to generalize to real-world images, and low output accuracy. We develop CAD-Coder, an open-source VLM fine-tuned to generate CadQuery code directly from images, trained on GenCAD-Code (163,671 image–code pairs). On a 100-sample test subset, CAD-Coder outperforms strong VLM baselines (e.g., GPT-4.5, Qwen2.5-VL-72B), achieving a 100% valid-syntax rate and the highest 3D-solid similarity. It also shows early generalization, producing CAD code from real photographs and executing operations (e.g., filleting) not seen during fine-tuning. The performance and adaptability of CAD-Coder highlight the potential of VLMs fine-tuned on design-specific tasks to streamline workflows for engineers. We conclude with directions for design-specific VLMs, including synthetic-data pipelines to improve dataset coverage and reinforcement-learning strategies that exploit objective geometric rewards. Together, DesignQA and CAD-Coder indicate a practical path toward VLM assistants that accelerate requirement-aware engineering design and image-to-CAD workflows. All code, data, and trained models are released publicly to support reproducibility and future research.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Synthetic Mucins for Microbial Modulation</title>
<link href="https://hdl.handle.net/1721.1/165150" rel="alternate"/>
<author>
<name>Barnes, Carolyn E.</name>
</author>
<id>https://hdl.handle.net/1721.1/165150</id>
<updated>2026-03-17T03:03:55Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Synthetic Mucins for Microbial Modulation
Barnes, Carolyn E.
Mucus is a ubiquitous hydrogel that coats all epithelial cell surfaces. Once thought to be an inert hydrogel, the mucosal barrier is now recognized as a critical component of the innate immune system. It serves not only as a physical and chemical barrier against foreign objects, pathogens, and environmental stressors, but also as a selective interface that shapes an organism’s microbiome. Many of these functions are mediated by the primary structural component of mucus: the mucin protein. Mucins are large, densely glycosylated proteins, with carbohydrates contributing up to 80% of their molecular weight. In addition to mediating microbial interactions, mucins contribute to the biophysical properties of mucus that enable lubrication, adhesion, and protection of tissues. Beyond their physical responsibilities, mucins modulate virulence of microbes, promote cultivation of commensal bacteria through adhesion points and nutrient presentation, and mediate critical immune modulations of the host. However, molecular-level insights remain lacking in understanding mucin structure as well as function. The large size and heterogeneity of mucins and their glycosylation have made it challenging to parse the individual contributions of mucin structural features to biological function. Synthetic mucin mimics, developed using polymer chemistry, offering a promising strategy to probe these structure–function relationships by enabling precise control over molecular weight, glycan identity and density, polymer architecture, and morphology. To address these challenges, we developed novel synthetic mucins to elucidate mucin structure–function relationships. Emphasizing the importance of mucin’s extended morphology, we designed new synthetic strategies to isolate and investigate the impact of mucin structural motifs, such as anionic glycan identity and bottlebrush architectures, on synthetic mucin morphology (Chapter 2). We next demonstrated that synthetic mucins can provide insight into the glycan-binding preferences of probiotic bacteria, highlighting the roles of mucins in shaping microbial organization within the microbiome and emphasizing the potential of synthetic mucins as prebiotics (Chapter 3). Finally, recognizing that mucins key modulators of microbial virulence and infection, we explored the potential of synthetic mucins as antibacterial scaffolds capable of delivering therapeutic cargoes. This work emphasized the importance of understanding how polymer structure influences biological activity and targeting capabilities (Chapter 4). Ultimately, we anticipate that the synthetic mucin platform developed in this work will help address fundamental questions in mucin biology and advance the development of mucin-inspired therapeutic materials.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Techno-Economic Assessment of Grid-Scale Energy Storage Technologies Under Evolving Market and Decarbonization Scenarios: Liquid Air and Lithium-ion Battery Systems</title>
<link href="https://hdl.handle.net/1721.1/165149" rel="alternate"/>
<author>
<name>Cetegen, Shaylin Ashley</name>
</author>
<id>https://hdl.handle.net/1721.1/165149</id>
<updated>2026-03-17T03:03:40Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Techno-Economic Assessment of Grid-Scale Energy Storage Technologies Under Evolving Market and Decarbonization Scenarios: Liquid Air and Lithium-ion Battery Systems
Cetegen, Shaylin Ashley
As global energy systems transition toward low-carbon futures, long-duration energy storage technologies are expected to play a critical role in ensuring grid reliability and flexibility. Liquid air energy storage has emerged as a promising long-duration energy storage solution due to its scalability, ability to be sited flexibly, and environmental sustainability. This thesis investigates the technical modeling and economic feasibility of liquid air energy storage systems under both current and projected future electricity market conditions using a combination of process modeling, mathematical optimization, and techno-economic analysis.&#13;
&#13;
The study begins with an exploratory investigation into the modeling of process components in liquid air energy storage systems, emphasizing multistream heat exchangers and the emergence of bifurcation phenomena in thermodynamic models. This is followed by an economic optimization of standalone LAES systems across various electricity markets in the United States and Europe. A mixed-integer linear programming framework is developed to simultaneously optimize system design and hourly operation with the objective of maximizing net present value, providing new insights to inform LAES deployment strategies.&#13;
&#13;
Building on these foundations, a forward-looking economic analysis is conducted for 18 electricity regions in the United States under eight distinct decarbonization scenarios. This analysis is based on future electricity price projections from the Cambium 2023 dataset developed by the National Renewable Energy Laboratory. The results identify Texas and Florida as especially favorable markets for liquid air energy storage under a range of decarbonization pathways. Sensitivity analyses reveal that economic incentives such as capital expenditure subsidies have a greater impact on profitability than technical improvements such as increased round-trip efficiency.&#13;
&#13;
Finally, the thesis presents a comparative economic assessment of liquid air energy storage systems and lithium-ion battery systems across key metrics, including levelized cost of storage, system lifetime, siting constraints, and cost-effectiveness over multi-hour to multi-day durations. The findings show that liquid air energy storage systems can offer lower cost and greater flexibility than lithium-ion batteries for long-duration applications.&#13;
&#13;
This work establishes a generalizable framework for assessing the economic feasibility of emerging energy storage technologies and offers practical insights for decision-makers evaluating the role of liquid air energy storage in future electricity systems.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Active Epistemology</title>
<link href="https://hdl.handle.net/1721.1/165148" rel="alternate"/>
<author>
<name>Fiat, Yonathan</name>
</author>
<id>https://hdl.handle.net/1721.1/165148</id>
<updated>2026-03-17T03:03:38Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Active Epistemology
Fiat, Yonathan
Orthodox epistemology deals with what we might call "passive agents:" agents that merely respond to what's given to them. But we care most about are active agents: agents that can sing, dance, seek evidence, make conjectures, etc. In this dissertation, I explore three ways in which this observation is relevant to the traditional questions of epistemology. I argue that it can shine a new light on the nature of knowledge, help us make sense of standard scientific practices, and help solve some famous puzzles in epistemology.&#13;
&#13;
Chapter 1 asks how the fact that we know something is related to the question of whether we should seek more evidence. This problem has been discussed in the philosophical literature under the name of "the dogmatism puzzle." In this chapter, I use the multi-armed bandit model to argue for a new solution to the dogmatism puzzle: knowledge often requires proper maintenance.&#13;
&#13;
Chapter 2 presents a novel account of significance testing, one of the most important practices in science. It shows that we can make sense of this practice if we accept the claim that predictions are better than accommodation. I then use this account to answer some of the many objections to significance testing.&#13;
&#13;
Finally, chapter 3 argues that what we know often depends on our choices, and not merely on what is given to us. We can gain knowledge by choosing something, whereas if we fail to choose, or attempt to choose too many things, we fail to gain knowledge. I then use this idea to offer a new solution to the lottery paradox, to help understand inductive knowledge, and, once again, to make sense of significance testing and related practices.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mechanisms of genetic risk in Alzheimer’s disease</title>
<link href="https://hdl.handle.net/1721.1/165147" rel="alternate"/>
<author>
<name>von Maydell, Djuna</name>
</author>
<id>https://hdl.handle.net/1721.1/165147</id>
<updated>2026-03-17T03:03:37Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Mechanisms of genetic risk in Alzheimer’s disease
von Maydell, Djuna
Sporadic Alzheimer's disease (AD) accounts for the majority of dementia cases worldwide, yet effective treatments remain limited. Genetic variants associated with AD provide insight into disease etiology and highlight potential therapeutic targets. The ε4 allele of the APOE gene is the strongest genetic risk factor for AD, and rare variants in the ABCA7 gene are among the next most significant. Both genes encode lipid transporters, suggesting an important role for lipid metabolism in AD etiology. However, the exact cellular mechanisms through which these variants increase AD risk remain incompletely understood. After a brief introduction in Chapter 1, Chapter 2 demonstrates that damaging ABCA7 variants disrupt neuronal phosphatidylcholine metabolism and mitochondrial function. These defects were reversed by supplementation with the phosphatidylcholine precursor cytidine diphosphate-choline (CDP-choline). Chapter 3 shows that APOE4-expressing oligodendrocytes exhibit altered cholesterol transport and impaired myelination. Pharmacological modulation of cholesterol transport in the brain reversed these defects, improving cognitive function in mouse models. These findings suggest that lipid-related mechanisms represent a class of targetable drivers of AD risk, but it remains unclear whether lipid-targeted treatments would be broadly applicable across AD or restricted to specific disease subtypes. Chapter 4 introduces a practical framework for identifying disease subtypes in high-dimensional biological data based on principles from machine learning and data attribution, and applies it to explore transcriptional subtypes among AD brains. Together, these studies reveal potential mechanisms of genetic risk in AD, highlight lipid disruptions as upstream mediators, and propose a practical framework for uncovering AD subtypes.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Realm of Grace</title>
<link href="https://hdl.handle.net/1721.1/165146" rel="alternate"/>
<author>
<name>Mathew, Abraham</name>
</author>
<id>https://hdl.handle.net/1721.1/165146</id>
<updated>2026-03-17T03:03:24Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">The Realm of Grace
Mathew, Abraham
This dissertation examines three familiar interpersonal phenomena—repentance after wronging another, forgiveness in the wake of being wronged, and reciprocation after being helped—and what they teach us about moral obligation in general. &#13;
&#13;
When a wrongdoer sincerely repents, we tend to see that as a reason to forgive them. But why? Chapter 1 offers an answer that I call the ‘Redemptive View’. Repentance, I contend, involves changing how one relates to a past misdeed, acknowledging its wrongness and committing to moral betterment. Consequently, the wrong comes to play a new role in the wrongdoer’s life, becoming a source of moral learning and an impetus towards moral growth. As a result, the wrong is imbued with a new, positive significance that it lacked so far, generating a reason to forgive. &#13;
&#13;
But are we ever obliged to forgive our wrongdoers? Many think not. On the orthodox view, all obligations to others correlate with demandable or enforceable rights, and since no one has the standing to demand or enforce forgiveness, no one can be owed it. Chapter 2 disputes this orthodoxy, arguing that forgiveness is sometimes obligatory, even if no wrongdoer has a right to it. In particular, if you’ve previously accepted a gracious offer of forgiveness and are now in a position to extend an equally or less gracious offer to one of your wrongdoers, then you must forgive. Otherwise, you would be imposing on others a harsher standard than you accepted for yourself. It turns out that disparate instances of forgiving and being forgiven within a life are connected in surprising ways: accepting forgiveness in the past can bear on whether present forgiveness is discretionary or obligatory. &#13;
&#13;
Chapter 3 turns to cases of standing in debt to someone who helps us—debts we can repay by reciprocating. Some debts are transactional: they can be claimed or waived, and once repaid, the parties return to the status ex ante. Others resist this structure: they cannot be claimed or waived, and reciprocation only generates a persisting, often alternating cycle of mutual aid. What explains this distinctive normative profile? I argue that such non-transactional debts arise when an act of 2 care tacitly proposes a more intimate relationship. When the beneficiary responds in kind, the relationship is reshaped, and new constitutive norms take hold. These norms ensure persistence, but also a normatively healthy pattern of alternation: after all, each act in the cycle is an undemandable gift extended in a time of need, and each response an act of due gratitude. &#13;
&#13;
In all, this dissertation challenges the orthodoxy that if we owe something to others, they must have a right to it. We learn that the moral landscape isn’t exhausted by the realm of rights. There is also a ‘realm of grace’—a realm in which we are required to do much for others that they cannot demand of us.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Presuppositionless proxies of politeness: An (eventually) Optimality-Theoretic account</title>
<link href="https://hdl.handle.net/1721.1/165145" rel="alternate"/>
<author>
<name>Wang, Ruoan</name>
</author>
<id>https://hdl.handle.net/1721.1/165145</id>
<updated>2026-03-17T03:02:31Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Presuppositionless proxies of politeness: An (eventually) Optimality-Theoretic account
Wang, Ruoan
Recent research has seen growing interest in the nature of social meaning, “the constellation of qualities and properties that linguistic forms convey about the social identity of language users” (Beltrama 2020, see also Eckert 2008). This dissertation concerns those linguistic forms termed polite pronouns. They convey one particular aspect of social identity: the social distance between language users, where a large social distance mandates the expression of politeness. Most existing work on polite pronouns has modeled polite meaning via dedicated grammatical mechanisms, such as a dedicated feature ([hon], Ackema &amp; Neeleman 2016) or a dedicated dimension of meaning (McCready 2019). This dissertation shows that such dedicated mechanisms are superfluous, as existing grammatical mechanisms can be appropriated to describe and explain both the form and meaning of polite pronouns. Building on Wang (2023), I use a purpose-built typological sample of polite pronouns in &gt;220 genetically and geographically diverse languages to establish the shapes of polite pronouns, showing that polite pronouns are obtained by asymmetrical recruitment of existing ϕ-featural values. Furthermore, the shapes of polite pronouns converge precisely with the shapes of semantic defaults, those ϕ-featural values underspecified in meaning, which must emerge when the context provides little or no information about number or person. To explain this convergence, I use the notion of negative politeness: respecting an interlocutor’s right to be unimpeded (Brown &amp; Levinson 1987). I argue that semantic defaults and polite pronouns are morphologically identical because they are pragmatically identical: underspecification makes them well-suited to be avoidance mechanisms in the service of negative politeness. This captures the intuition that avoidance behaviors are a core component of expressing politeness. Specifically, polite pronouns enable speakers to avoid making presumptions about aspects of the interlocutor. Hence, presuppositionlessness, proxies, and politeness are what this dissertation is all about. I implement this intuition in Optimality-Theoretic terms, where polite grammars are defined by an outranking of Markedness (which mandates speakers to avoid presupposition-rich forms) over Faithfulness (which mandates speakers to be as informative as possible). The resulting system is restrictive but powerful, delivering a factorial typology which exactly mirrors the recruitment asymmetries. With no stipulations specific to polite pronouns, the account is furthermore able to make concrete predictions about politeness phenomena beyond the ϕ-featural domain. Happily, the resulting account is as lean as can be. Its main innovations are methodological and theoretical. Methodologically, the investigation is led by a large cross-linguistic sample, and the additional consideration of use conditions alongside morphological exponence. Theoretically, recruitment affords us with a fresh look at how the universal inventory of features is organized. This dissertation shows that recruitment is not only viable as a meta-grammatical operation, but even desirable for reasons of economy or computational efficiency.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>AI-Augmented CAD Onboarding: A Personalized Approach to Reducing Learning Friction</title>
<link href="https://hdl.handle.net/1721.1/165144" rel="alternate"/>
<author>
<name>Aiouche, Nada</name>
</author>
<id>https://hdl.handle.net/1721.1/165144</id>
<updated>2026-03-17T03:06:47Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">AI-Augmented CAD Onboarding: A Personalized Approach to Reducing Learning Friction
Aiouche, Nada
Autodesk Fusion is a leading cloud‑based CAD platform, yet new users often face steep learning curves due to scattered resources, inconsistent guidance, and a lack of personalization. This thesis addresses these challenges and proposes an adaptive AI assistant, embedded within Fusion, as a potential solution to streamline onboarding, reduce search time, surface hidden tools, and deliver guidance tailored to the user’s learning style. By centralizing learning support within the design environment, the proposed system aims to reduce cognitive load and keep users focused on productive work rather than on searching for help. Based on surveys, interviews, and controlled user testing comparing tasks with and without simulated AI support, the study suggests that personalized, context‑aware assistance can improve task flow, reduce frustration, and provide particular benefits for beginners. Findings indicate that such a solution not only accelerates skill acquisition but also supports long‑term engagement by making the early stages of learning more intuitive and less discouraging. Finally, this thesis outlines practical next steps Autodesk can take to develop, integrate, and validate such a system to realize its full potential in accelerating adoption, improving retention, and enhancing the overall user experience.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design and Implementation of a Low-Cost Bioreactor System for Synechocystis sp. PCC 6803: Integrated Cultivation, Lysis, and Filtration for Sustainable Glucose&#13;
Harvesting</title>
<link href="https://hdl.handle.net/1721.1/165143" rel="alternate"/>
<author>
<name>Baho, Ingie</name>
</author>
<id>https://hdl.handle.net/1721.1/165143</id>
<updated>2026-03-17T03:06:43Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Design and Implementation of a Low-Cost Bioreactor System for Synechocystis sp. PCC 6803: Integrated Cultivation, Lysis, and Filtration for Sustainable Glucose&#13;
Harvesting
Baho, Ingie
This thesis describes the design, modeling, and fabrication of a three-part bioreactor and biomass processing system designed to cultivate Synechocystis sp. PCC 6803 and extract its intracellular glucose. The resulting glucose can support sustainable biomanufacturing for diverse downstream applications, including serving as a feedstock for K. rhaeticus to produce cellulose, as a precursor for biofuel production, or as an ingredient in food supplements. The system incorporates a photobioreactor, a lysis module for acid and ultrasound-based cell disruption, and a pressure-driven filtration setup. The photobioreactor was equipped with a pH, dissolved oxygen, and temperature probe; and optical density was continuously monitored using a custom-built module. The lysis unit contained an ultrasound, a pH, and temperature probe in addition to pumps connected to acid and base chambers. The filtration unit was connected to a compressed air tank and designed with a pressure control valve, safety valve, and syringe filter. Glucose concentration was quantified offline using high-performance liquid chromatography (HPLC). Various light regimes were tested, and under an incident light intensity of approximately 400 µmol m⁻² s⁻¹ at a color temperature of 6500 K, cultures were shown to reach a biomass productivity of 90 mg L⁻¹ day⁻¹, with a specific growth rate of 0.166 day⁻¹ and glucose concentrations up to 5.08 mg L⁻¹. Innovative culture strategies were explored at a small scale, including the cultivation of Synechocystis sp. PCC 6803 in spent K. rhaeticus media to promote economic and sustainable media recycling. When supplemented with additional nutrients, the spent media supported Synechocystis growth up to an OD680 of 0.5. To further characterize the photobioreactor and expected growth based on environmental parameters, both mathematical and machine learning models were built. While the mathematical models were not experimentally validated, the machine learning model model achieved a strong predictive accuracy with a mean absolute error and variance of 0.0009±0.0003 over a 10-fold cross-validation. The system demonstrates up to 65% reduction in cost compared to commercial alternatives.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design of Passive, Air-Based Squeeze Film Damping for Kinematic Couplings</title>
<link href="https://hdl.handle.net/1721.1/165142" rel="alternate"/>
<author>
<name>Gazdus, Hannah</name>
</author>
<id>https://hdl.handle.net/1721.1/165142</id>
<updated>2026-03-17T03:06:09Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Design of Passive, Air-Based Squeeze Film Damping for Kinematic Couplings
Gazdus, Hannah
In precision machine design, kinematic couplings are a common choice for aligning and fixturing parts due to their high repeatability. Their centering ability, along with their high stiffness from hertzian contact, enables kinematic couplings to minimize errors. Although kinematic couplings are applied in dynamic situations such as machining, they are currently designed using only static methods with little regard to vibration-induced error. Machine designers thus do not fully understand how kinematic couplings will behave in situ and do not take advantage of easily applicable damping methods to minimize vibration-induced error. This thesis provides a framework for dynamically modeling kinematic couplings with air-based squeeze film damping. This method of damping takes advantage of the inherent air layer between the top and bottom plates of a kinematic coupling; being so simple to leverage, this work advocates for the inclusion of such damping in every kinematic coupling. This work demonstrates that squeeze film damping can increase a coupling’s damping over 100X, significantly raising dynamic stiffness and reducing vibration-induced error. This work’s design principles will allow for more rigorous and thorough development of kinematic couplings, which is especially necessary for applications where vibration-induced errors must be minimized.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Aft Fuselage Boundary-Layer Ingesting Propulsion Systems for Turbo-Electric Aircraft</title>
<link href="https://hdl.handle.net/1721.1/165141" rel="alternate"/>
<author>
<name>Chen, Zhibo</name>
</author>
<id>https://hdl.handle.net/1721.1/165141</id>
<updated>2026-03-17T03:03:48Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Aft Fuselage Boundary-Layer Ingesting Propulsion Systems for Turbo-Electric Aircraft
Chen, Zhibo
This thesis focuses on a rigorous assessment of a tube-and-wing turbo-electric boundarylayer ingesting (BLI) aircraft, including (i) definitions of the aerodynamic attributes for the best fuel burn benefit, (ii) design guidelines to achieve these attributes, and (iii) a conceptual design of tail-BLI aircraft. The assessment of the BLI benefit relative to a baseline conventional aircraft is based on a TASOPT-CFD analysis framework, using a CFD body-force model for fan representation and a power balance for aircraft performance analysis. The aircraft mission is to carry a 17500 kg payload over 5500 km range at a cruise Mach number of 0.8. The baseline aircraft has two next-generation geared turbofan engines with fan pressure ratio (FPR) of 1.35. The tail-BLI aircraft has six integrated propulsors with electric fans of 1.40 FPR in addition to two underwing turbofans; it is estimated to achieve an 8.5% fuel burn benefit compared to the baseline. To achieve the benefit, the tail-BLI aircraft has a non-axisymmetric aft fuselage that creates axial vorticity in the tail-mounted propulsor inflow, providing co-swirl to reduce rotor incidence variations to improve the fan efficiency and stall margin. The best propulsor configuration, with six 24-inch fans, is established balancing the boundary-layer kinetic energy defect ingestion and propulsion system weight. The integrated propulsor aerodynamic design includes an upstream inlet extension, an inlet leading edge design tailored for each propulsor, a supercritical nacelle, an annular nozzle, an elliptic nozzle plug, and a non-axisymmetric tail cone, to minimize shock loss and achieve attached flow at cruise and takeoff. The BLI fan pressure ratio was selected based on a trade between engine propulsive efficiency and propulsion system weight. Non-axisymmetric stator inlet angles are also used to reduce the stator incidence variations. Fan forcing analysis suggests that the BLI rotor unsteady aerodynamic loading has negligible impact on blade life. Fan stability analysis shows that the BLI inlet distortion reduces the rotor stall margin by 4.5% and 2.7% relative to the rotor in uniform flow, at cruise and takeoff, respectively. The tail-BLI propulsors are thus estimated to have appropriate operability with BLI inlet distortion. In conclusion, the distributed aft fuselage boundary-layer ingesting propulsion system is suggested to offer a relevant pathway for tube-and-wing configurations with a potential major advancement in fuel burn reduction.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Adaptive Optimization Algorithms for Step-Size Selection and Online Problem Parameter Estimation</title>
<link href="https://hdl.handle.net/1721.1/165140" rel="alternate"/>
<author>
<name>Cavalcanti Vilela, João Vítor</name>
</author>
<id>https://hdl.handle.net/1721.1/165140</id>
<updated>2026-03-17T03:02:34Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Adaptive Optimization Algorithms for Step-Size Selection and Online Problem Parameter Estimation
Cavalcanti Vilela, João Vítor
Optimization algorithms have long been fundamental tools across science and engineering, and now are also at the center of the rise of machine learning and artificial intelligence. However, extracting good practical performance from many of these algorithms depends on careful manual calibration and tuning. In fact, the algorithms with best theoretical guarantees do not always perform best in practice. In this light, reducing the effort and skill required to set up optimization algorithms can save immeasurable amounts of time and resources. This thesis makes two contributions to this end, proposing optimization algorithms that require less supervision by adaptively selecting step-sizes and estimating problem parameters online. First, we revisit the foundational subroutine called backtracking line search (BLS). Typically, a base algorithm calls BLS to search for a parameter (e.g., step-size) such that the iterates of that algorithm satisfy a given condition (e.g., Armijo, descent lemma) that leads to desirable behavior (e.g., reducing the value of the objective function). To find a feasible parameter, BLS successively adjusts a parameter candidate by a constant factor until the given condition is satisfied. We propose to instead adjust the parameter candidate by an adaptive factor that takes into account the degree to which the given condition is violated. This adaptive BLS (ABLS) subroutine adds no computational burden relative to BLS, but can lead to significantly better practical results. Experiments on over fifteen real-world datasets demonstrate that ABLS can be more robust than BLS to problem set ups and require significantly fewer condition evaluations to return higher-quality parameters. At the same time, we prove that ABLS enjoys essentially the same theoretical guarantees of BLS. The second contribution of this thesis is a parameter-free algorithm for smooth and strongly convex objective problems called NAG-free. To our knowledge, NAG-free is the first adaptive algorithm capable of directly estimating the strong convexity parameter without priors or resorting to restart schemes. We prove that NAG-free converges globally at least as fast gradient descent, and achieves accelerated convergence locally if the Hessian is locally smooth and other mild additional assumptions hold. Prominent classes of machine learning problems with locally smooth Hessian include the regularized logistic loss, ridge regression, exponential family negative log-likelihoods with bounded natural parameters, and Moreau envelope smoothing. We present real-world experiments in which NAG-free performs comparably well with restart schemes, demonstrating that it can adapt to better local curvature conditions represented by the smoothness and strong convexity parameters.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Expanding Structural Complexity in Condensed Phosphates: P(V) Reagents for Controlled Phosphoanhydride Bond Construction</title>
<link href="https://hdl.handle.net/1721.1/165139" rel="alternate"/>
<author>
<name>Qian, Kevin</name>
</author>
<id>https://hdl.handle.net/1721.1/165139</id>
<updated>2026-03-17T03:03:23Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Expanding Structural Complexity in Condensed Phosphates: P(V) Reagents for Controlled Phosphoanhydride Bond Construction
Qian, Kevin
At the outset, Chapter 1 begins by examining the central importance of phosphorus in both nature and industry, situating the chemistry of polyphosphates within a broader historical and conceptual context. A brief overview of the history of polyphosphate research in the life sciences is given, as well as a discussion on the persistent ambiguities in condensed phosphate nomenclature. To frame the work in the following chapters, the idea of the "hydrocarbon analogy" is introduced: a conceptual strategy that draws parallels between the structure and reactivity of organic molecules and that of inorganic phosphate constructs, thus offering a new way of thinking about molecular complexity in this underexplored chemical space.&#13;
&#13;
Building from this foundation, Chapter 2 details the discovery of a diphosphorylation reagent, identified to be a mixture of neutral zwitterionic adducts of P4O10 and pyridine. This reagent emerged serendipitously from our efforts to activate trimetaphosphate and has proved to be a powerful tool for synthesizing functionalized cyclic metaphosphates. Chapter 3 is the extrapolation of our strategy to activate otherwise inert metaphosphates by forming ring-strained bicyclic ultraphosphates. We discuss the reactivity of [P5O14]3–, the oligophosphate analog of the bicyclic hydrocarbon housane. Attempts to push this strategy further toward the synthesis of a hexaphosphorylation reagent were ultimately unsuccessful but provided valuable insight into the limitations of this ring-strain activation paradigm. The methods developed in earlier chapters set the stage for our collaboration with the Fielder group, described in Chapter 4. We designed new reagents to chemoselectively conjugate polyphosphates to densely functionalized peptides and proteins. These synthetic strategies pave the way for the study of recently discovered, but poorly characterized post-translational modifications featuring novel phosphorylation modes. Finally, Chapter 5 presents a series of unpublished studies that expand on the themes of the previous chapter. Together, these investigations contribute to a growing body of knowledge aimed at broadening the chemical space of condensed inorganic phosphates.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Unifying electric field-mediated heterogeneous catalysis</title>
<link href="https://hdl.handle.net/1721.1/165138" rel="alternate"/>
<author>
<name>Dinakar, Bhavish</name>
</author>
<id>https://hdl.handle.net/1721.1/165138</id>
<updated>2026-03-17T03:03:32Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Unifying electric field-mediated heterogeneous catalysis
Dinakar, Bhavish
Electric fields in the catalytic active sites of enzymes, originating from charged amino acid residues in the protein scaffold, have been invoked as a key factor governing the extraordinary activities and selectivities of enzymes for catalyzing chemical transformations. Models and experimental measurements of these electric fields have been utilized to quantitatively rationalize reaction kinetics, understand active-site solvent structures, and design better enzymatic catalysts. Despite the success of using electric fields to study enzymatic systems, this electric field approach has not yet been widely used in studying liquid phase heterogeneous catalysis, largely due to the difficulty in quantifying electric fields at active sites as well as challenges in designing heterogeneous catalysts with precise control of electric fields. In this thesis, we extend this electric field methodology into the realm of liquid-phase heterogeneous catalysis, both to accelerate heterogeneously catalyzed reactions and to understand solvent structures in catalyst pores.&#13;
&#13;
First, we design an electrochemical basket reactor system to apply an electric field to the surface of Brønsted-acidic carbon nanotube catalysts via an applied potential, and we examine the effect of electric field on acid-catalyzed alcohol dehydration rates of 1-methylcyclopentanol to 1-methylcyclopentene in an electrolyte-containing acetonitrile solution. We observe that the reaction rate is remarkably sensitive to electric field, with reaction rates increasing ~100,000 fold over 0.5 V of applied potential, and we propose a model that explains the rate-potential scaling and dependence on ionic strength. In further support of our model, we experimentally observe a theorized “isokinetic potential” where the reaction rate is independent of ionic strength. Through reactive base titrations, we quantify the density of active sites and demonstrate that the rate promotion is due to increasing the site activity, rather than increasing the number of active sites.&#13;
&#13;
Next, we demonstrate that this electric field effect does not require a special electrochemistry setup to manifest and can also be observed when a catalyst particle is simply touching another electrically conductive material. Through a carefully designed suite of experimental controls, we show that the intrinsic activity of acidic carbon nanotubes changes by an order of magnitude when they are in electrical contact with inert, thermally reduced carbon nanotubes, via the same mechanism that we previously observed when rates changed with an applied potential.&#13;
&#13;
We then shift gears to examine solvent structures in confined zeolite pores using vibrational Stark spectroscopy, an infrared spectroscopic technique developed for measuring electric fields at enzyme active sites. Using Ti-Beta zeolite as a test case, we develop a method that quantifies the electric field experienced by a probe molecule at the Ti active sites in solvent-filled pores. We find that the electric field varies with solvent identity and also with zeolite hydrophobicity, indicating that the secondary sphere interactions of the solvent with the zeolite framework result in distinct solvent structures in the hydrophobic and hydrophilic zeolites. Furthermore, we observe that this method identifies distinct electric fields between hydrophobic and hydrophilic zeolites even in the absence of solvent, offering this technique as a method for distinguishing types of active site environments.&#13;
&#13;
Finally, we apply this approach to examine hydrogen-bonding interactions inside Ti-Beta zeolite pores when filled with secondary alcohol solvents, motivated by previous work which observed that intraporous solvent structures varied significantly with changes in zeolite hydrophobicity. Using an infrared liquid flow cell that we designed to achieve record signal-to-noise and in-pore selectivity, we find that hydrogen-bonding interactions between a probe molecule and solvent are different between the ensemble-average in-pore environment and at the zeolite active site, revealing that there may be a discrepancy between typically observed intraporous bulk solvent structures invoked to explain kinetic phenomena and the kinetically relevant active-site solvent structures.&#13;
&#13;
Collectively, this thesis demonstrates that techniques and models of electric field-induced catalysis previously applied to understand biological systems can also be utilized to improve catalyst activity and understand the structure of solvent under confinement in liquid-phase heterogeneous catalysis. We hope that future work will expand on our methods, applying them to further investigate the effects of applied electric field on reactivity and utilizing vibrational probes to aid in understanding local structure at catalyst active sites.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of Modular Strategies for Enhancing&#13;
Biomanufacturing in Komagataella phaffii</title>
<link href="https://hdl.handle.net/1721.1/165137" rel="alternate"/>
<author>
<name>Shi, Shuting</name>
</author>
<id>https://hdl.handle.net/1721.1/165137</id>
<updated>2026-03-17T03:03:18Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Development of Modular Strategies for Enhancing&#13;
Biomanufacturing in Komagataella phaffii
Shi, Shuting
The landscape of protein therapeutics is advancing towards more complex modalities that offer greater medical potential but present significant challenges to existing biomanufacturing frameworks. Alongside these technical challenges, socio-economic factors drive an urgent need for accelerated, cost-effective biomanufacturing to increase rapid response capabilities, ensure equitable access to advanced treatments, and alleviate the economic strain on global healthcare systems. This creates a significant and unresolved gap: the cost-effective production of increasingly complex protein therapeutics under an accelerated timeline. Komagataella phaffii holds great potential to fill this gap, as it is a eukaryotic microorganism well-established for the rapid and cost-effective expression of recombinant proteins. However, realizing this potential requires advanced engineering strategies to extend K. phaffii’s strengths to these complex modalities. This thesis presents the development of modular strategies to enhance the biomanufacturing of such complex therapeutics in K. phaffii. The first part of this thesis focuses on providing alternative manufacturing strategies for VLP vaccines, a promising next-generation vaccine platform whose adoption has been limited by manufacturing challenges. To streamline VLP vaccine development and manufacturing, a modular production framework was developed. This framework’s core strategy involves the secretory production of VLP scaffold subunits in K. phaffii followed by their in vitro assembly, which then allows for flexible "plug-and-display" antigen attachment to the pre-formed scaffold. This approach can be adopted for versatile antigen adaptation and can be stockpiled for rapid response. More importantly, this framework circumvents the manufacturing challenges associated with traditional intracellular VLP production, such as complex downstream purification that leads to increased production cost and decreased yield and quality. This transition not only makes each modular step more suited for current available operational units, especially downstream processing, significantly increasing scalability and reducing cost, but also holds promise for integration into future continuous manufacturing frameworks. A specific implementation and key outcome of this approach was the development of the SpyCatcher::I53-50 modular VLP scaffold, which was then validated by demonstrating the high-fidelity display of a SpyTag-fused HIV Env trimer antigen with preservation of critical neutralizing epitopes, showcasing its potential as a promising modular VLP vaccine platform. Enabling the secretory production of the scaffold’s multimeric subunits required overcoming significant manufacturability challenges. For instance, proteolytic degradation of the SpyCatcher-153-50A fusion was resolved via protein engineering, while secretion of the aggregation-prone 153-50B subunit was achieved through a multi-pronged approach combining process optimization, host engineering, and a novel pseudo-chaperone strategy. These rational engineering efforts were not only crucial for producing these key building blocks but also serve as a practical roadmap for tackling other hard-to-produce targets. The challenges encountered in efficiently optimizing VLP subunit production, even with extensive rational engineering, underscored a broader imperative for more powerful and systematic optimization tools. This realization motivated the second part of this thesis: the development of a modular high-throughput screening (HTS) platform to accelerate the engineering of K. phaffii for enhanced production of complex biologics, using monoclonal antibodies (mAbs) as an industrially significant proof-of-concept. The HTS platform is built on a dual-mode yeast surface display (YSD) system. By establishing a quantitative correlation between surface display and secretion for a full-length mAb, this work unlocks the potential of YSD for reliably screening secretion phenotypes, enabling, for the first time, screening under normal cultivation conditions at an unprecedented scale. Its successful application in a genome-wide CRISPR/Cas9 knockout screen identified numerous novel host gene knockout targets. Individual validation of 20 top-ranked candidates confirmed that 15 led to statistically significant increases in mAb specific productivity, with the most effective target yielding an 8-fold improvement over the baseline strain. This represents a substantial technological advancement for K. phaffii engineering, offering a powerful engine to shift from empirical, low-throughput optimization towards systematic, data-driven cell line development. Designed as a modular platform, it holds promise for screening other perturbation libraries and for optimizing a wide range of protein targets beyond mAbs.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of a targeted lipid nanoparticle platform for in vivo RNA delivery to hematopoietic stem and progenitor cells</title>
<link href="https://hdl.handle.net/1721.1/165136" rel="alternate"/>
<author>
<name>Shi, Dennis</name>
</author>
<id>https://hdl.handle.net/1721.1/165136</id>
<updated>2026-03-17T03:03:15Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Development of a targeted lipid nanoparticle platform for in vivo RNA delivery to hematopoietic stem and progenitor cells
Shi, Dennis
Hematopoietic stem cells (HSCs) are rare cells residing in the bone marrow that are responsible for the generation and maintenance of the body’s immune system through a process known as hematopoiesis. Because of their self-renewal capability and crucial role in producing immune cells, HSCs have garnered a lot of therapeutic interest for the treatment of genetic blood disorders. However, current HSC gene therapies are autologous ex vivo transplantations which consists of three major steps: 1) mobilization and harvest of the patient’s own stem cells, 2) ex vivo editing of those cells, and 3) reinfusion of the edited cells back into the patient. While the results of these ex vivo therapies are quite promising, there are many limitations associated with the current process. First, the manufacturing process is logistically complex which results in high costs and lengthy times. Second, prior to re-infusion of the edited cells, patients must undergo a conditioning regimen (done with a chemotherapeutic) to deplete the existing cells from the bone marrow and make space for the edited cells to graft. This conditioning has many deleterious side effects including organ damage, increased risk of infection, and infertility. One strategy to bypass the existing limitations of ex vivo HSC therapy is to directly edit the HSCs in vivo. Here, we describe the development of a targeted non-viral lipid nanoparticle (LNP) delivery system that can deliver RNA to hematopoietic stem and progenitor cells (HSPCs) in vivo following a single intravenous injection. We targeted CD117, a receptor that is expressed on HSCs, and conjugated an antibody against CD117 to our LNPs for receptormediated delivery of RNA. We demonstrated that modulation of certain LNP parameters such as circulation time and ligand density increase delivery to the bone marrow. Using this targeted platform, we demonstrated LNP uptake and delivery of both siRNA and Cre mRNA into HSPCs. In addition, in the Ai14 mouse model, we showed that HSCs transfected with our targeted LNPs maintain their stemness and functionality to produce mature immune cells. We also evaluated the overall biodistribution of our anti-CD117 LNP and investigated the downstream effects of delivery to organs other than the bone marrow. Finally, we explored in vivo gene editing using a variety of approaches. We optimized our LNP formulation to increase protein expression in bone marrow HSCs and used our optimized formulation for in vivo base editing.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A 3D human liver tissue model of the hepatobiliary junction</title>
<link href="https://hdl.handle.net/1721.1/165135" rel="alternate"/>
<author>
<name>Westerfield, Ashley D.</name>
</author>
<id>https://hdl.handle.net/1721.1/165135</id>
<updated>2026-03-17T03:03:16Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A 3D human liver tissue model of the hepatobiliary junction
Westerfield, Ashley D.
Cholestasis, or disruption in bile flow, is a poorly-understood feature of many liver diseases and is a well-established indication for liver transplant. Despite this clinical significance, many tissue engineering strategies for modeling or treating liver disease fail to recapitulate physiological bile flow. Recent advances in the field of tissue engineering and organoid technology have enabled the culture of human hepatocytes and bile duct cells in vitro, these models lack a key function of the liver which is bile transport. In this thesis, I first describe developments in bioengineering technology that have allowed for the culture and manipulation of bile duct cell organoids. I then present a 3D multicellular spheroid model that captures the structure and function of the human hepatobiliary junction—the interface between liver and bile duct cells that is often disrupted in liver disease. By co-aggregating primary human hepatocytes and bile duct cells, I engineer a liver spheroid model that recapitulates physiological bile flow through a functional connection between the two cell types. These spheroids maintain cell polarity and transport bile from hepatocyte canaliculi to bile duct structures. This function is quantified by leveraging a high-throughput imaging assay with AI-assisted analysis to track junction formation and bile flow over time. I also use this system to model ischemic injury of the bile duct, a common complication of liver transplant, by tuning the oxygen parameters of the spheroid culture. In this injury model, I observe and describe two processes that potentially contribute to injury: a reversible loss of canalicular function during hypoxia, followed by selective bile duct cell death after reoxygenation. This human-based, scalable platform provides a new tool to study bile duct biology, understand mechanisms of biliary injury after liver transplant, and support drug discovery efforts for cholestatic liver diseases.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modeling and Control of a Continuous Lyophilizer</title>
<link href="https://hdl.handle.net/1721.1/165134" rel="alternate"/>
<author>
<name>Kadambi, Rohan Patrick</name>
</author>
<id>https://hdl.handle.net/1721.1/165134</id>
<updated>2026-03-17T03:03:13Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Modeling and Control of a Continuous Lyophilizer
Kadambi, Rohan Patrick
Lyophilization, or vacuum freeze-drying, is a separations process in pharmaceutical manufacturing used to stabilize aqueous drug products by removing nearly all the water at cryogenic temperatures. This process is often applied to final-dose formulations of injectable drugs already dispensed in vials. Despite its benefits, freeze-drying is a slow process, with typical cycle times exceeding two days. To meet demand, lyophilization is applied to large batches of thousands to tens of thousands of vials at time. These large batches are plagued by non-uniformity, non-optimal operating conditions, and slow technology transfer across production scales.&#13;
&#13;
Continuous manufacturing offers a solution to many of these problems, with its demonstrated history in improving efficiency, homogeneity, and control through its inherent parallelization of operations. However, the need to interact directly with vials, as well as modify heat transfer to them, has delayed the development of a continuous lyophilization process.&#13;
&#13;
This work presents the design, control, and implementation of a modular continuous lyophilizer. The continuous lyophilizer is composed of a series of custom aluminum chambers around a magnetic levitation system, which facilitate the heat transfer and motion required. The modular nature ensures that critical geometry is conserved when production rate is scaled between laboratory-, pilot-, and industrial-scales. This system demonstrated continuous operation for four days on various solutions in standard 10R vials. In this work, novel continuous freezing and vacuum systems were designed to support the operation. Additionally, an innovative mass sensor was designed to monitor each vial traveling through the system independently. When combined with per-vial temperature data available from thermal imaging, this system enables a more comprehensive understanding of the process dynamics.&#13;
&#13;
This continuous process opens opportunities for expanding the use of lyophilization by simplifying technology transfer during scale-up, improving product uniformity, and increasing process productivity through optimal control.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Atomistic Insights into Disordered Proteins and Condensates via Molecular Simulations</title>
<link href="https://hdl.handle.net/1721.1/165133" rel="alternate"/>
<author>
<name>Wang, Cong</name>
</author>
<id>https://hdl.handle.net/1721.1/165133</id>
<updated>2026-03-17T03:03:10Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Atomistic Insights into Disordered Proteins and Condensates via Molecular Simulations
Wang, Cong
Biomolecular condensates formed by intrinsically disordered proteins (IDPs) play essential roles in cellular organization and function, attracting broad scientific interest. In addition to experimental approaches, molecular dynamics simulations—particularly atomistic simulations—serve as powerful tools for gaining mechanistic insights into IDP conformations and inter- and intramolecular interactions within condensates. In this work, we developed a multiscale simulation strategy that balances efficiency and accuracy by combining coarse-grained and atomistic modeling. We further applied dimensionality reduction techniques to extract meaningful features from high-dimensional simulation data. Using this integrated framework, we investigated three scientific problems: (1) the sequence-dependent conformational ensembles of IDPs, (2) nonspecific yet selective condensate–drug interactions, and (3) the mechanism of formation of monocomponent, multiphasic condensates formed by tetrapeptide sequences.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>3D-Printed Tangential Flow Filtration and High-Throughput Microfluidic Electroporation for Scalable Microbial Processing</title>
<link href="https://hdl.handle.net/1721.1/165132" rel="alternate"/>
<author>
<name>Cui, Yuhe</name>
</author>
<id>https://hdl.handle.net/1721.1/165132</id>
<updated>2026-03-17T03:06:44Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">3D-Printed Tangential Flow Filtration and High-Throughput Microfluidic Electroporation for Scalable Microbial Processing
Cui, Yuhe
Bacterial transformation via electroporation is fundamental to modern biotechnology applications including therapeutic protein production, biomaterial synthesis, and agricultural enhancement. However, conventional electroporation workflows face critical bottlenecks that limit their scalability and industrial applicability; mainly inefficient electrocompetent cell preparation and low-throughput transformation processes.&#13;
This thesis presents two complementary 3D-printed technologies that independently address these limitations for scalable microbial processing. First, a novel spiral channel tangential flow filtration (TFF) system was developed that replaces conventional centrifugation-based methods for preparing electrocompetent cells. The spiral geometry enhances mixing dynamics and enables continuous washing of bacterial cultures, dramatically reducing preparation time while improving cell recovery compared to traditional centrifugation and membrane filtration approaches that suffer from time constraints, labor intensity, and membrane fouling.&#13;
Second, a 3D-printed microfluidic electroporation platform featuring geometry-optimized electric field distribution was designed. Building upon established M-TUBE principles, the bilaterally converged channel architecture creates localized field enhancement at reduced applied voltages, enabling high-efficiency transformation of larger cell volumes. This design overcomes the throughput limitations of conventional cuvette-based systems that require manual handling and process only small volumes.&#13;
Both technologies leverage additive manufacturing to create cost-effective alternatives to traditional protocols. Computational fluid dynamics simulations and experimental validation demonstrate significant improvements in processing time, transformation efficiency, and throughput compared to conventional methods. These complementary technologies demonstrate the potential for future integration into a complete workflow for scalable microbial transformation, with promising implications for broader implementation in industrial biotechnology, synthetic biology, and large-scale research applications.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Integrating Digital Threads Across Engineering Organizations: A Q-methodology Analysis of Challenges with a Novel Factor Selection Approach</title>
<link href="https://hdl.handle.net/1721.1/165131" rel="alternate"/>
<author>
<name>Kong, Kanglin</name>
</author>
<id>https://hdl.handle.net/1721.1/165131</id>
<updated>2026-03-17T03:06:15Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Integrating Digital Threads Across Engineering Organizations: A Q-methodology Analysis of Challenges with a Novel Factor Selection Approach
Kong, Kanglin
This research investigates the integration of digital tools across design, manufacturing, and quality management functions through a cross-industry analysis informed by Q-methodology. Despite considerable investments in digital transformation, many manufacturing organizations face persistent gaps between design intent and production execution, exacerbated by fragmented digital threads, limited adoption of Model-Based Definition, and the continued reliance on manual, error-prone workflows. Through qualitative interviews and quantitative Q-sort analyses conducted among participants across diverse industries, this study identifies key patterns of pain points and solutions perceived differently by stakeholder groups. It reveals insights into how variations in industry characteristics influence digital maturity, particularly regarding the adoption and integration of Product Lifecycle Management, Model-Based Enterprise, and Design for Manufacturability practices. Findings underscore the critical role of enhancing digital thread connectivity, ensuring early integration of manufacturability feedback, embedding automated cost analytics, and facilitating supplier readiness for full MBD adoption. Furthermore, the research highlights the necessity of strategic organizational change management alongside technological advancements. This work provides a nuanced understanding of organizational perceptions and identifies tangible pathways toward a cohesive, software-driven approach for bridging gaps among engineering functions, thereby informing future strategies for manufacturers and software vendors alike.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>An Analysis on Aircraft Overflight Noise Distribution on Airport Adjacent Communities</title>
<link href="https://hdl.handle.net/1721.1/165130" rel="alternate"/>
<author>
<name>Wang, Z. Juju</name>
</author>
<id>https://hdl.handle.net/1721.1/165130</id>
<updated>2026-03-17T03:03:06Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">An Analysis on Aircraft Overflight Noise Distribution on Airport Adjacent Communities
Wang, Z. Juju
Aircraft overflight noise and can be a source of noise pollution and can also be the limiting factor in airport operations [1]. This research studies the distribution of overflight noise near 22 airports across 12 metropolitan areas in the United States. It uses a fast noise model to generate noise data from surveillance flight track data and correlates noise data with population data, income, and noise complaints when data is available. Findings reveal that population noise exposure is significantly influenced by urban density and proximity of the airport to city centers. Airports located farther from major cities, particularly newer and larger facilities like IAD, DFW, and DEN, tend to decrease noise exposure due to their expansive land areas and remote siting. Noise exposure is also impacted by operational procedures. Arrival procedures typically follow straight in paths aligned with runway centerlines, concentrating noise along specific corridors. We find a few exceptions to this trend in complex airspaces which have turns in their arrival procedures, often enabled by Area Navigation (RNAV) technology. This allows flights to avoid adjacent airspaces and also overfly targeted lower population areas. The implementation of Area Navigation and Performance Based Navigation technology has enabled greater use of arrival paths involving turns, which were previously limited to visual conditions. In contrast, departure paths and contours from departures are more varied due to routing flexibility. These are often shaped by noise abatement strategies and airspace constraints. Runway orientation relative to urban centers also plays a critical role in determining noise exposure, with runways directed away from cities generally resulting in fewer person-noise events. In a socioeconomic analysis, we find lower-income communities are more frequently located near high-noise zones, though exceptions exist in areas with desirable geographic features near the airport such as waterfront property.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Human-in-the-Loop Task Directed Exploration and&#13;
Planning in Unknown Environments</title>
<link href="https://hdl.handle.net/1721.1/165129" rel="alternate"/>
<author>
<name>Jois, Aneesh Ramesh</name>
</author>
<id>https://hdl.handle.net/1721.1/165129</id>
<updated>2026-03-17T03:06:08Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Human-in-the-Loop Task Directed Exploration and&#13;
Planning in Unknown Environments
Jois, Aneesh Ramesh
For robots to perform everyday tasks autonomously, like humans, they should be able to perceive, explore and act in novel environments while pursuing high level goals. This capability is known as task-directed exploration, and is essential in domains ranging from household assistance robots to disaster response. However, existing approaches each fall short in fulfilling the task directed exploration problem. Classical symbolic planners require brittle, hand crafted domain models and assume complete knowledge of the environment. POMDP based formulations provide a principled approach to planning under uncertainty but are computationally intractable in large, open world settings. Foundation models such as large language models (LLMs) and vision language models (VLMs) offer strong commonsense knowledge and pattern recognition capabilities but lack the structured spatial grounding and adaptivity required for embodied execution. This thesis presents a unified framework that closes this gap by tightly integrating foundation models with a real time semantic mapping and planning stack. The system consists of four components: (i) a dual layer perception module that combines a deterministic 3D scene graph with a frontier based probabilistic belief field, using vision language models for object labeling and large language models for room classification; (ii) a symbolic task planner that converts natural language instructions into high level activity plans; (iii) an exploration executive that selects informative waypoints, monitors task progress, and dynamically triggers replanning and human queries; and (iv) a unified value of information (VoI) metric that governs both autonomous exploration and selective human interaction, enabling the robot to reason about uncertainty and task utility in a principled way. Demonstrated in realistic simulated environments, the proposed framework allows agents to ground natural language goals in their surroundings, explore efficiently, reason over partial knowledge, and adapt plans as new information is acquired, while involving the user only when doing so meaningfully improves performance.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Scaling Bayesian inference for generative models via probabilistic programming</title>
<link href="https://hdl.handle.net/1721.1/165128" rel="alternate"/>
<author>
<name>Loula Guimarães de Campos, João</name>
</author>
<id>https://hdl.handle.net/1721.1/165128</id>
<updated>2026-03-17T03:03:02Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Scaling Bayesian inference for generative models via probabilistic programming
Loula Guimarães de Campos, João
This thesis addresses these challenges for the field of data science, developing probabilistic programming methods that enable rational AI agents in that domain. The work is organized into two parts: Part I introduces GenLM and Adaptive Weighted Rejection Sampling for translating natural language instructions into structured programs with both syntactic and semantic constraints, outperforming existing approaches across a number of domains. Part II develops Bayesian generative models for tabular data that can answer a wide range of questions, yield stable inferences across subpopulations of different sizes, and scale to hundreds of millions of rows on GPUs; as well as early work on Large Population Models that unify heterogeneous datasets. Together, these contributions provide first steps towards a unified framework for creating AI agents that can rationally formalize and answer questions about data.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Folding and Quality Control Mechanisms of Procollagen</title>
<link href="https://hdl.handle.net/1721.1/165127" rel="alternate"/>
<author>
<name>Kim, Seo Yeon</name>
</author>
<id>https://hdl.handle.net/1721.1/165127</id>
<updated>2026-03-17T03:02:10Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Folding and Quality Control Mechanisms of Procollagen
Kim, Seo Yeon
Procollagens undergo a complex folding process with the assistance of various ER proteostasis network components and enzymes that introduce post-translational modifications. In Chapter 2, we investigate the biological role of one of the post-translational modifications, the highly conserved N-glycosylation on procollagen C-propeptides by generating and characterizing multiple mouse models that lack the N-glycan on procollagen-I. We show that the lack of N-glycan can affect procollagen folding inside the cells, which translates to reduced bone mass in mice lacking the N-glycan. These data provide new insights into the roles of the evolutionarily conserved, yet underappreciated collagen’s N-glycan. Mutations in procollagen genes and other proteins important for procollagen folding often cause misfolding defects in procollagen that can ultimately lead to disease. In Chapter 3, we explore the various molecular mechanisms that the ER proteostasis network can use to recognize diverse classes of misfolding procollagen variants. Specifically, we apply cell engineering and quantitative mass spectrometry to elucidate the interactomes of diverse osteogenesis imperfecta-causing procollagen α1(I) variants with distinct folding defects, and show that ER proteins differentially engage with these misfolding procollagen variants. These findings provide a foundation for illuminating quality control pathways that the different types of misfolding procollagen variants are subject to during their biogenesis. Taken together, the work in this thesis meaningfully advances our knowledge in the mechanisms of procollagen folding and quality control.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tribochemistry of Frictional Ignition in High-Pressure Oxygen</title>
<link href="https://hdl.handle.net/1721.1/165126" rel="alternate"/>
<author>
<name>Garcia Jimenez, Andres</name>
</author>
<id>https://hdl.handle.net/1721.1/165126</id>
<updated>2026-03-17T03:03:01Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Tribochemistry of Frictional Ignition in High-Pressure Oxygen
Garcia Jimenez, Andres
Frictional heating of metals at sliding contacts in high-pressure oxygen environments can result in catastrophic metal fires. This phenomenon, known as frictional ignition, presents an ongoing challenge in the development of oxygen-compatible components for next-generation reusable rocket engines. Early NASA investigations on frictional ignition indicated that ignition-resistant materials developed a robust oxide tribolayer. Breakdown of this tribolayer was hypothesized to drive the onset of frictional ignition. While this early work ranked the relative ignition resistance of several engineering alloys, it lacked a physical explanation for the mechanisms of tribolayer breakdown and frictional ignition, limiting its utility in predicting ignition conditions and designing ignition-resistant components. This thesis addresses this knowledge gap through a combination of experiments and modeling, which reveal the fundamental mechanisms governing frictional ignition of metals. These insights are then developed into a quantitative framework to predict ignition conditions and identify safe operating limits for sliding systems in high-pressure oxygen environments. The present work considers frictional ignition in the context of thermal ignition theory. Using high-speed dry sliding experiments and finite element modeling, we establish two conditions that must be satisfied for frictional ignition. The first condition is tribolayer breakdown, which we confirm through in situ measurements of the friction coefficient and complementary thermochemical modeling. Three distinct tribolayer breakdown mechanisms are identified – oxide melting, substrate metal melting, and solid-state mechanical failure. The dominant breakdown mechanism is found to depend on alloy chemistry and operating conditions. The second condition for frictional ignition is satisfaction of the thermal ignition criterion for thermal runaway, i.e., when the oxidative heating rate exceeds the rate of heat loss. Numerical modeling shows that the tribolayer acts as a diffusion barrier that slows oxidative heating. Thermal runaway is only possible in the absence of this tribolayer once the temperature at the sliding surface exceeds a critical threshold. The critical temperature provides a conservative estimate for evaluating ignition risk, since below this temperature, ignition cannot occur. This framework is used to explain the ignition behaviors of all materials with available frictional ignition data, highlighting the exceptional ignition resistance of the Nibase alloy MA754. Experiments show that this behavior derives from the unique mechanical properties, microstructure, and growth kinetics of the MA754 tribolayer. The above framework is extended to assess the ignition behaviors of dry dissimilar metal sliding systems. Frictional ignition experiments revealed that tribolayers may form through oxidation of the parent metal or via material transfer between counter-surfaces, potentially resulting in tribolayers with disparate chemistry from the base alloy. The dynamics of material transfer depend on the contact geometry, operating conditions, and material-pair combination. We find that favorable material transfer may result in the formation of thick, lubricating, and protective oxide tribolayers on both surfaces that suppress ignition. We develop expressions to establish safe operating bounds for dissimilar contacts with different geometries – symmetric contacts and a pin-on-disk geometry. These expressions highlight the effects of material-pair combination and contact geometry on ignition conditions. This thesis concludes by providing materials selection and component design strategies for ignition-resistant tribosystems. The first strategy is to select or design materials with high thermal conductivity, low enthalpy of oxidation, and favorable oxidational wear behaviors, i.e., rapid formation of a refractory, delamination-resistant tribolayer that lubricates the rubbing surface and protects against oxidation. The second strategy is to enhance cooling by optimizing component design (e.g., contact geometry) or modifying operating conditions (e.g., working fluid). Collectively, this thesis provides a roadmap for designing ignition-resistant sliding components capable of withstanding extreme oxygen pressures, with direct application to the development of safer oxygen-compatible hardware for next-generation reusable rocket engines.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Model-Based Design of an Indirectly Irradiated Thermochemical Hydrogen Production Reactor Capable of Radiant Heat Recovery</title>
<link href="https://hdl.handle.net/1721.1/165125" rel="alternate"/>
<author>
<name>Scott, Peter</name>
</author>
<id>https://hdl.handle.net/1721.1/165125</id>
<updated>2026-03-17T03:05:53Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Model-Based Design of an Indirectly Irradiated Thermochemical Hydrogen Production Reactor Capable of Radiant Heat Recovery
Scott, Peter
Renewable/green hydrogen is of great interest as an alternative fuel for decarbonizing sectors such as shipping, aviation, chemicals, and heavy industry. The high cost of green hydrogen through electrolysis, an off-the-shelf mature technology, has led researchers to explore alternative water-splitting methods including thermochemistry, which can also be used for cosplitting of H2O and CO2 to produce syngas that can be converted to liquid fuels. Moreover, the process can operate on stored high temperature heat, making 24/7 operation possible. This thesis focuses specifically on the two-step thermochemical redox cycle using non-stoichiometric metal oxides. While the process has been demonstrated at the lab and pilot scales, efficiencies have so far been limited by the large temperature swing between the reduction and oxidation conditions, resulting in high sensible heat losses. In our previous work, we have introduced the Reactor Train System (RTS), a concept that features multiple and identical individually sealed, indirectly irradiated, metal oxide-containing reactors which move between a hot reduction zone and a cooler oxidation zone, engaging in counterflow radiative heat recovery in between. Prior modeling of the RTS, which revealed promise for high efficiency and heat recovery effectiveness, used either zero- or one-dimensional models of the RTS reactors and assumed a basic reactor design that featured a sapphire window for radiative heat transfer between the source and the redox material. A detailed conceptual design and higher-fidelity modeling of the RTS reactors is the focus of this thesis. This thesis is a comprehensive documentation of the model-based iterative design process of a novel thermochemical hydrogen reactor with highly unique and challenging functional requirements, from initial concept to early prototyping. The primary engineering challenge is that the structural pressure vessel also acts as the heat transfer interface, and must serve both purposes while undergoing extreme thermal cycling. The original windowed reactor concept is first investigated using a radiative heat transfer model, with findings of unfavorable heat losses and concerns regarding practicality guiding us towards a reactor design using a fully ceramic vessel acting also as a heat transfer interface. A more advanced thermomechanical model was then used to select a geometry which we call the Multi-Tubular Radiative Recovery Reactor (MiTR3 ) instead of one larger ceramic vessel, and to study the design parameters of the MiTR3 such as tube wall thickness with critical insight into the stress and failure probability of the ceramic tubes. Besides its mechanical strength and favorable thermal properties, this design is scalable and adaptable to different operating conditions and redox materials. Moreover, it utilizes easy to assemble off-the-shelf components. We then further augmented our modeling capabilities with multidimensional, time-dependent thermo-fluid and chemical reaction physics, incorporating both reduction and oxidation kinetics into the conservation equations for full-cycle simulations using ceria as the metal oxide. This enabled further study of the impact of important parameters, especially operational parameters such as redox material loading and form factor, gas flow rates, etc., and a deeper understanding of realistic system level efficiencies and productivities that take into consideration the impact of auxiliary components such as vacuum pumping and gas separation technologies on both. Finally, our ongoing experimental work with a benchtop-scale, single-tube reactor prototype aimed at derisking components and validating modeling results is presented, alongside plans for future prototyping efforts.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Personalizing Robot Assistance under Uncertainty about the Human</title>
<link href="https://hdl.handle.net/1721.1/165124" rel="alternate"/>
<author>
<name>Li, Shen</name>
</author>
<id>https://hdl.handle.net/1721.1/165124</id>
<updated>2026-03-17T03:02:59Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Personalizing Robot Assistance under Uncertainty about the Human
Li, Shen
Robots have the potential to enhance human well-being by assisting with daily activities, particularly for older adults and people with disabilities. One example is robot-assisted dressing, where a robot helps a person put on clothing. However, no two individuals are alike. Each person has unique preferences, behaviors, and needs, making personalization essential for effective assistance. A central challenge is that robots often operate under uncertainty about the human they are helping. This uncertainty may involve the person’s preferences, hidden physical states, or reactions to assistance. If not properly addressed, such uncertainty can lead to ineffective, undesired, or even unsafe outcomes. This thesis asks: How should a robot behave when it is uncertain about the human? To answer this, I present a unified framework for uncertainty-aware personalization in humanrobot interaction, spanning three core components of robot intelligence: preference learning, state estimation, and motion planning. I propose methods that (1) reduce uncertainty using implicit cognitive signals, (2) represent and respect uncertainty through set-based state estimation, and (3) act under uncertainty using relaxed safety constraints. First, I introduce an approach that uses response time, a subtle yet informative cognitive signal, as implicit feedback for preference learning. While traditional methods rely solely on binary choices, I developed the first algorithm that integrates both choices and response times to infer not just what a person prefers, but how strongly they feel about those preferences. Theoretical analysis reveals that response times significantly reduce uncertainty about user preferences, especially when users have strong preferences. In simulation studies, this method decreased misidentification of the most preferred option by up to 55 %, enabling faster and more accurate personalization without extra user input. Second, I address the problem of estimating hidden human states during physical interaction. For example, in dressing, parts of the body, such as the elbow, may be occluded. I introduce the first set-based estimator that represents and respects uncertainty from human behavior and sensing models trained on limited data. Instead of outputting a point estimate, the method constructs a geometric set, such as a 3D box, guaranteed with high probability to contain the true human state. In dressing experiments, the estimator achieved 92 % inclusion using significantly smaller boxes than prior methods, balancing reliability and precision, supporting safe and responsive physical assistance. Third, I consider how a robot should plan motion when it is uncertain about future human behavior. Traditional safety constraints typically prohibit any contact, which can cause the robot to freeze when uncertainty is high. I propose a more flexible definition of safety that allows either collision avoidance or low-impact contact. Integrated into a learning-based control framework, this approach enables efficient motion while maintaining safety. In dressing tasks, it reduced task time by 78 % without compromising safety. Together, these contributions show how robots can reduce, represent and respect, and act under uncertainty to personalize their assistance. This thesis lays a foundation for robots that not only respond to commands, but also understand and adapt to the nuanced, evolving, and uncertain nature of human behavior.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Towards Probabilistic Dynamically-Orthogonal Primitive Equation Forecasts for the Gulf of Mexico</title>
<link href="https://hdl.handle.net/1721.1/165123" rel="alternate"/>
<author>
<name>Rodriguez, Victor Alonso</name>
</author>
<id>https://hdl.handle.net/1721.1/165123</id>
<updated>2026-03-17T03:06:36Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Towards Probabilistic Dynamically-Orthogonal Primitive Equation Forecasts for the Gulf of Mexico
Rodriguez, Victor Alonso
Forecasting circulation in the Gulf of Mexico requires an explicit treatment of uncertainty associated with the Loop Current and its eddies, whose geometry and timing can fluctuate irregularly and lead to chaotic deterministic forecasts. Building on the dynamically orthogonal (DO) methodology for evolving low-rank stochastic representations and on efficient DO numerical schemes for geophysical fluid flows, this thesis develops and assesses massive probabilistic Primitive Equation (PE) hindcasts for the Gulf using the Dynamically Orthogonal Primitive Equations (DO–PE) framework as implemented for realistic ocean dynamics in previous MIT-MSEAS studies. The workflow extracts a time-dependent stochastic subspace from a balanced MIT MSEAS PE ensemble via singular-value decomposition, represents the initial nonGaussian coefficient cloud with Gaussian mixture models, and subsequently evolves the DO–PE mean, modes, and coefficients under dynamics, numerics, and forcings consistent with the MIT MSEAS PE modeling system. A 12-day hindcast simulation experiment spanning 28 May–8 June 2015 quantifies skill and convergence across truncations, with weak-type tests (means, standard deviations, kernel-density marginals) and strong-type tests against matched full-order realizations started from identical initial states. Consistent patterns emerge. Uncertainty concentrates along the Loop Current jet, the Yucatán inflow, and eddy peripheries. For weak convergence, as the retained dynamic modes increase from 15 to 60, standard-deviation maps sharpen and expand coherently along these dynamically active features, and the statistics indicate convergence with the normalized RMSEs for both mean and standard deviation fields decreasing in a largely monotonic fashion. At depth and for sea-surface height, late-time mean-error behavior can become mildly non-monotonic, indicating sensitivity to mode allocation among variables. In strong-convergence experiments, DO–PE reconstructions initialized at coefficient quantiles closely track the corresponding full-order trajectories: pathwise misfits remain modest, organize along shear zones, and their RMSE time series lie below persistence and within the envelopes implied by the weak-type spread, reinforcing that truncation primarily filters small-scale content while preserving trajectory-level evolution over the 10–12-day window. Together, these results demonstrate a practical, reproducible pipeline for massive probabilistic forecasting in the Gulf of Mexico that respects PE dynamics while quantifying and localizing forecast uncertainty in flow-dependent ways (details, configuration, and figures in Chapters 3–4). This thesis also introduces dynamic web pages for the interactive visualization of DO–PE output, facilitating the inspection of mean fields, modes, and standard deviations over time in Chapter 5.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interfacial Engineering of Perovskite Solar Cells</title>
<link href="https://hdl.handle.net/1721.1/165122" rel="alternate"/>
<author>
<name>Lu, Yongli</name>
</author>
<id>https://hdl.handle.net/1721.1/165122</id>
<updated>2026-03-17T03:02:48Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Interfacial Engineering of Perovskite Solar Cells
Lu, Yongli
The efficiency of the lead halide perovskite solar cells has improved from 3% up to above 27% in a decade. However, the long term stability of the device still need to be improved in order to compete with traditional photovoltaic technologies, such as Silicon and GaAs. Hybrid organic and inorganic interfaces in the devices are the origin of many degradation pathways. Understanding the nature of these interfaces and chemical and physical mechanism behind their evolution under electrical, light and thermal bias is the subject of this thesis. In the following chapters, I focus on developing a electron transport layer (ETL) based on chemical bath deposition (CBD) for the synthesis of a tin dioxide (SnO₂). The conventional CBD recipe uses thioglycolic acid (TGA) to facilitate attachments of SnOx particles onto the substrate. However, nonvolatile TGA is reported to harm the operational stability of PSCs. A volatile oxalic acid (OA) is introduced as an alternative to TGA. OA, a dicarboxylic acid, functions as a chemical linker for the nucleation and attachment of particles to the substrate in the chemical bath. Moreover, OA can be readily removed through thermal annealing followed by a mild H₂O₂ treatment, as shown by FTIR measurements. Synergistically, the mild H₂O₂ treatment selectively oxidizes the surface of the SnOₓ layer, minimizing nonradiative interface carrier recombination. EELS (electron-energy-loss spectroscopy) confirms that the SnOₓ surface is dominated by Sn⁴⁺, while the bulk is a mixture of Sn²⁺ and Sn⁴⁺. This rational design of a CBD SnOₓ layer leads to devices with T₈₅ = 1500h, a significant improvement over the TGA-based device with T₈₀ = 250h. The champion device reached a power conversion effciency of 24.6%. This work offers a rationale for optimizing the complex parameter space of CBD SnOₓ to achieve efficient and stable PSCs. In addition to developing a electron transport layer (ETL) based on chemical bath deposition (CBD) for the synthesis of a tin dioxide (SnO₂), a perovskite ink additive, bis(2- oxo-3-oxazolidinyl) phosphinic chloride (BOP-Cl), was developed with the following benefits: (1) The phosphoryl and two oxo groups form six-membered intermolecular hydrogen-bonded rings with the formamidinium cation (FA), mitigating ion migrations. (2) The hydrogen bonding reduces the electrophilicity of the ammonium protons by donating electron density, therefore reducing its reactivity with the surface oxygen on the metal oxide. Furthermore, the molecule can react to form a protecting group on the nucleophilic oxygen at the tin oxide transport layer surface through the elimination of chlorine. As a result, we achieve perovskite solar cells with an efficiency of 25.0% and improved MPP stability T₉₃ = 1200h at 40–45 °C compared to a control device (T₈₆ = 550h). In addition, we show a negative correlation between the strength of hydrogen bonding of different phosphine oxide derivatives to the organic cations and the degree of metastable behavior (e.g., initial burn-in) of the device.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimization and Control of Sorption-Based Atmospheric Water Harvesting Devices</title>
<link href="https://hdl.handle.net/1721.1/165121" rel="alternate"/>
<author>
<name>Čas, Jan Luka</name>
</author>
<id>https://hdl.handle.net/1721.1/165121</id>
<updated>2026-03-17T03:06:12Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Optimization and Control of Sorption-Based Atmospheric Water Harvesting Devices
Čas, Jan Luka
Water scarcity is a global challenge with only one-third of the world’s population having consistent access to clean drinking water. Atmospheric water harvesting is a promising approach owing to the significant amount of water, i.e., 13000 trillion liters, present in the atmosphere. While significant recent research has focused on developing innovative sorbent materials, components and system designs, there is limited understanding of how to optimize device performance through active control. Key operating parameter selection, specifically, desorption temperature and cycle length, has relied on experimental trial and error. In this thesis, model predictive control (MPC) was used to dynamically optimize power input and cycle time in atmospheric water harvesting devices, for the first time. Real time optimization using a custom defined cost function was achieved based on a simplified heat and mass transfer model. The model allowed for the cost function to be based on water output and therefore eliminated the need for setpoint definition a priori. Through a modular, customizable software and hardware stack, the device demonstrated reliability and maintainability while preserving user interaction. MPC was evaluated against five distinct sorbent isotherm types, using three distinct operating modes: maximizing water production, maximizing operational profit and increasing thermal efficiency. All modes outperformed a constant temperature setpoint by dynamically determining the appropriate end time of the cycle, which depending on the material varied up to 10,000 s. Furthermore, the controller was able to increase thermal efficiency up to 3 percentage points compared to the reference by dynamically tapering power input to match water production. Experimental validation was performed with a device built by the Device Research Laboratory. The results showed excellent agreement between measured water output and real-time prediction, which provides a viable strategy for future controller deployment. This work paves a way for more sophisticated device operation through real-time optimization of power input and cycle length and highlights a modular software and hardware design to realize high performance atmospheric water harvesting devices.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Heuristic-Based Framework for Cost-Effective Product Design Enabled by Manufacturing Automation: Application to Large-Scale Sheet Metal Structures</title>
<link href="https://hdl.handle.net/1721.1/165120" rel="alternate"/>
<author>
<name>Flores Medina, Enrique</name>
</author>
<id>https://hdl.handle.net/1721.1/165120</id>
<updated>2026-03-17T03:06:10Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A Heuristic-Based Framework for Cost-Effective Product Design Enabled by Manufacturing Automation: Application to Large-Scale Sheet Metal Structures
Flores Medina, Enrique
Sheet metal is prominent as a raw material for fabrication due to its flexible nature. Through cutting, bending, and joining, it can take a plethora of shapes, explaining its vast adoption in the construction, automotive, and aerospace industries. Furthermore, with automation, the labor and human error associated with its manufacturing can be mitigated. Nonetheless, the versatility of sheet metal can fade under the non-trivial dimensional and thickness constraints of some automated processes, particularly bending. This research, conducted in the context of a large-scale sheet metal manufacturer offering high customization, aims to maximize sheet metal’s automation capabilities while retaining its flexibility. To achieve this, two approaches are used: 1) the adoption of rollformed steel profiles with automated tube laser cutting as an additional manufacturing value stream, and 2) the development of a design automation tool that, upon receiving the dimensions and structural load conditions of a rectangular prism (called sub-module), generates a low-cost, automation compliant design. Findings show that optimal modules generally use medium to low-gauge channels as connected structural members, and thin-gauge sheet metal panels as slabs and shear walls, minimizing material use: the main cost component. Generated designs show cost reductions of up to 32% when compared to legacy counterparts. For the most produced product, this translates to yearly cost savings that range from $1.7 to $5.2 million.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design and Evaluation of a Bionic Knee with Myoneural Control</title>
<link href="https://hdl.handle.net/1721.1/165119" rel="alternate"/>
<author>
<name>McCullough, John A.</name>
</author>
<id>https://hdl.handle.net/1721.1/165119</id>
<updated>2026-03-17T03:06:00Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Design and Evaluation of a Bionic Knee with Myoneural Control
McCullough, John A.
Building bionic limbs requires the convergence of surgical innovation and robotic engineering: surgical constructs must reliably extract and amplify intent signals from the body, while robotic systems must accurately interpret these signals to deliver precise, responsive assistance and meaningful feedback. Individuals with above-knee amputation often experience reduced mobility and diminished agency when using conventional prosthetic devices. These limitations can impede human-prosthesis embodiment, the integration of the prosthesis into the user’s body schema.&#13;
This thesis advances the goal of seamless human-machine integration by presenting the design and evaluation of a powered knee prosthesis. The hardware, software, and embedded systems of a prior prototype were upgraded to create a modular, field-deployable research platform. The resulting system incorporates a control framework that enables volitional actuation of the knee joint via electromyographic signals recorded from surgically reconstructed agonist-antagonist muscle pairs.&#13;
To evaluate the system, one participant with an above-knee amputation completed a series of experimental tasks using both their prescribed microprocessor-controlled prosthesis and the bionic knee. Neural control performance was assessed through blindfolded free-space tasks, while functional capability was evaluated during sit-to-stand transitions, squatting, level-ground walking, and stair ascent.&#13;
The bionic prosthesis, weighing 2.6 kg, comparable to commercially available powered knees, demonstrated robust, real-time control across all tasks. Volitional neural inputs enabled intuitive and responsive joint actuation, resulting in superior performance and perceived embodiment relative to the passive device. During sit-to-stand and squatting tasks, ground reaction force data revealed increased weight-bearing on the prosthetic side, reflecting enhanced user confidence. Gait analysis showed improved temporal symmetry during walking with the bionic knee, indicating more balanced interlimb coordination. Embodiment scores were consistently higher across all measured domains, with the participant describing the prosthesis as “feeling like my leg” and “helping me.”&#13;
These findings underscore the potential of neurally integrated prosthetic systems to restore volitional control, improve functional performance, and promote a more embodied user experience.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Planning for in-Space Robotic Assembly of Modular CubeSats</title>
<link href="https://hdl.handle.net/1721.1/165118" rel="alternate"/>
<author>
<name>Freitag, Leila</name>
</author>
<id>https://hdl.handle.net/1721.1/165118</id>
<updated>2026-03-17T03:06:02Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Planning for in-Space Robotic Assembly of Modular CubeSats
Freitag, Leila
As the space industry continues to grow, developments such as the proliferation of small satellites have lowered the barrier to entry to space, making it faster and easier to launch payloads into orbit. However, the need for rapid deployment in space remains, particularly for rapid replacement of satellites that are nodes in larger constellations or supporting time-sensitive missions such as natural disaster monitoring. On-orbit assembly provides a solution to meet this demand. This thesis describes the development of Orbital Locker, a robotic system designed to enable the autonomous in-space assembly and deployment of modular satellites. The concept of operations involves a free-flying satellite that acts as a storage ``locker'', carrying modular CubeSat components and assembling and deploying them on request. Orbital Locker is an initial small-scale demonstration that is intended to be scaled up, consisting of a Cartesian gantry robot, and CubeSat modules dimensioned such that three modules stack to form a 1U CubeSat. The focus of this thesis is the software architecture of the system including module identification and assembly planning, and assembly testing in microgravity. Module identification makes use of fiducial markers to localize modules within the Locker, tracking the inventory of parts available. The assembly planner uses a graph-based method to optimize the steps required to assemble a desired satellite. It first generates a graph representation of possible assembly states and then uses a graph search algorithm to find the optimal sequence. Results from microgravity testing of the autonomous assembly on a ZeroG flight are presented, where a 1U CubeSat form factor was assembled in 72 seconds. Throughout this work, emphasis is placed on the extensibility of the system to support future scaled-up systems containing a larger inventory of modules.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Human Factors Observations in Flightcrew Response to&#13;
System Failure Events in Transport Category Aircraft&#13;
from 2000 to 2024</title>
<link href="https://hdl.handle.net/1721.1/165117" rel="alternate"/>
<author>
<name>Perez Gago, Cecilia</name>
</author>
<id>https://hdl.handle.net/1721.1/165117</id>
<updated>2026-03-17T03:05:56Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Human Factors Observations in Flightcrew Response to&#13;
System Failure Events in Transport Category Aircraft&#13;
from 2000 to 2024
Perez Gago, Cecilia
Understanding the effects of changes in aircraft technology on pilot response to system failure is crucial in the context of recent aviation safety events. This thesis makes human factors observations on pilot response to system malfunction in transport category aircraft through an analysis of final investigation reports produced by investigative authorities worldwide from 2000-2024. In the collected reports, system failure events in aircraft of newer generations correlated with higher percentages of appropriate response. Pilot response appropriateness was found to vary between systems, with particularly low appropriate response to failure of instruments and navigation, fuel, and autoflight systems (in decreasing order). When comparing the findings from the 2000-2024 data collection to those from a 1990-2000 study, pilot appropriate response was found to have increased for failures of the hydraulic and electrical systems. Pilot response to instruments and navigation, and autoflight failures was found to be low in both studies. Crew Alerting System (CAS) messages as initial stimuli for failure awareness were found to support increased levels of appropriate response percentages for failure of the electrical and hydraulic systems. CAS messages did not lead to a substantial improvement in appropriate response to failure of instruments and navigation, fuel, or the autoflight system. Finally, Endsley’s Situation Awareness theory was used as a framework to derive observations in the formulation of pilot responses to system failure across cases. CAS messages and system synoptic displays were observed to contribute to appropriate pilot perception, comprehension, and projection of failure of simple systems. Significant underlying complexity in the function of the autoflight and instruments and navigation systems, and the increased use of sensing, correlated with difficulty in comprehension and projection of system behavior following multiple failure events in 2000-2024 reports. Additionally, examples of failures across systems which displayed delayed or subtle stimuli, and unexpected system dependencies, were observed to lead to difficulties in flightcrew achievement of Level 2 and Level 3 Situation Awareness. Changes in aircraft technology were deemed to have had a varying effect on pilot situation awareness during failure of different airplane systems. Improvements in pilot response were observed in relatively simple systems, and gaps were identified given increased vulnerabilities in failure of systems with high functional complexity.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Integrative Spatial Technologies for Mapping Axonal Vulnerability in Alzheimer’s Disease</title>
<link href="https://hdl.handle.net/1721.1/165116" rel="alternate"/>
<author>
<name>Leible, Daniel</name>
</author>
<id>https://hdl.handle.net/1721.1/165116</id>
<updated>2026-03-17T03:06:06Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Integrative Spatial Technologies for Mapping Axonal Vulnerability in Alzheimer’s Disease
Leible, Daniel
Alzheimer’s Disease (AD) is the most common neurodegenerative disorder and is histopathologically defined by the accumulation of extracellular amyloid β (Aβ) plaques and intracellular neurofibrillary tau tangles. Pathology progression in AD follows a highly stereotyped, hierarchical pattern, implying a circuit-specific neuronal vulnerability to the underlying pathophysiological processes. Understanding the molecular and subcellular mechanisms driving this selective vulnerability has the potential to enable targeted, circuit-specific therapeutic approaches for early intervention in the detrimental spread of disease.&#13;
This thesis systematically reviews the current mechanistic understanding of selective vulnerability and early disease development in AD and explores how emerging integrative spatial technologies can address remaining open questions. First, molecular and subcellular processes underlying axonal Aβ and tau accumulation are examined, with a focus on cytoskeletal dynamics and axonal transport deficits. Second, intrinsic structural and metabolic risk factors shared by vulnerable axons are outlined, offering a potential explanation for the early regional onset of pathology. Since AD pathology appears to spread from these initial sites along synaptic connections, mechanisms of transsynaptic propagation of vulnerability are discussed next. Finally, the thesis compares integrative spatial technologies used to map disease progression and proposes neuronal barcoding as a promising strategy to overcome existing limitations.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>SLAM for Structured Environments Using Mechanically&#13;
Scanned Imaging Sonar</title>
<link href="https://hdl.handle.net/1721.1/165115" rel="alternate"/>
<author>
<name>Motz, Andrew J.</name>
</author>
<id>https://hdl.handle.net/1721.1/165115</id>
<updated>2026-03-17T03:05:58Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">SLAM for Structured Environments Using Mechanically&#13;
Scanned Imaging Sonar
Motz, Andrew J.
As the modern utilization of the maritime environment only grows, uncrewed systems present the future of safety, efficiency, and capability. For submerged operations, Autonomous Underwater Vehicles (AUVs) enable scientists, industry, and militaries to access remote, inhospitable locations and execute a variety of tasks beyond the capabilities of human occupied or operated systems. Much of this autonomy relies on the vehicle having a detailed understanding of its own position. Inertial Navigation Systems provide an estimate of the distance traveled by combining numerous sensors, but are subject to unbounded error accumulation over long distances. Traditional methods of correcting for this error found in terrestrial robotics are largely unavailable in the undersea domain due to the absorption and scattering effects of electromagnetic signals in water. Acoustic communications and imaging such as Sound Navigation and Ranging (SONAR) is the most reliable and trusted method for AUVs. This thesis presents a novel method for performing Simultaneous Localization and Mapping (SLAM) through acoustic means utilizing a Mechanically Scanned Imaging Sonar (MSIS). MSIS utilize a single beam sonar mechanically rotated around the vehicle to scan a full 360◦ area. Compared with other sonar systems of similar capabilities, they require less size, weight, and power, and are available at a lower price point.&#13;
The primary contribution of this thesis is a SLAM processing pipeline from MSIS to global position estimate. The pipeline extracts information from the MSIS data regarding the vehicle’s relative location compared to observed landmarks and then probabilistically matches the observed data to a best estimate vehicle position. The system is compatible with either an a priori map or a constantly updated SLAM global map. Individual beams from the MSIS are fused together into a submap. Contrast-based image processing identifies features of interest in the submap and appropriate features are then classified as observed landmarks. A probabilistic coarse-to-fine voting scheme identifies the most likely pose of the vehicle using the global map. When performing SLAM without an a priori map, observed landmarks are then evaluated and either added to the global map or used to update the position of known landmarks. While prior works have established MSIS SLAM by focusing on a single return per sonar beam, this thesis utilizes submaps to extract numerous features from a series of consecutive beams, allowing for more detailed and comprehensive feature mapping.&#13;
Experimental validation was performed using an ISS360 sonar mounted on a REMUS-100 AUV with the processing pipeline running via Robot Operating System on the vehicle backseat computer. The vehicle was assisted by divers traversing underneath the WHOI Iselin pier and performed both localization and SLAM using the submerged pier pilings. The system performed real-time localization, successfully bounding previously unbounded localization drift to an average of 3.4m, resulting in over a 90% reduction in absolute error after approximately one hour of submerged operations. The SLAM results mirrored the a priori accuracy demonstrating similar error bounds validating the system performance.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Colloidal Semiconductor Nanocrystals: Tools For and&#13;
Insights From First Principles Investigations</title>
<link href="https://hdl.handle.net/1721.1/165114" rel="alternate"/>
<author>
<name>Alexander, Ezra A.</name>
</author>
<id>https://hdl.handle.net/1721.1/165114</id>
<updated>2026-03-17T03:02:57Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Colloidal Semiconductor Nanocrystals: Tools For and&#13;
Insights From First Principles Investigations
Alexander, Ezra A.
Colloidal semiconductor nanocrystals, also known as quantum dots (QDs), are at once systems of great promise for diverse applications, systems with complex quantum physics that remain poorly understood at a fundamental level, and systems that are difficult to describe with conventional first principles computational chemistry methods due to their large size. Whereas QDs made from toxic materials like Cd and Pb are able to emit and absorb light efficiently and precisely, non-toxic alternative III-V QDs suffer from difficult to control defects that interfere with their radiative processes. Motivated primarily by the problem of understanding defects in III-V quantum dots, in this thesis we develop and apply new frameworks for the computational study of quantum dots. These frameworks include orbital localization techniques for de-convoluting ground-state band structures, a ∆SCF procedure for modeling the x-ray photoelectron spectra (XPS), and a low-cost machine learning framework for predicting Hamiltonians that can be used to extend molecular dynamics simulations. Through these frameworks, we reveal a more comprehensive picture of the defects that interfere with the optical performance of III-V quantum dots. We find that both three-coordinate indium and phosphorus can cause trap states in InP, explore how geometry and charge modulate trap depth, discover and explain a new source of four-coordinate trap states in InP and GaP, and assign shifts in P 2p XPS to specific III-V surface defects.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Pair Crossing Number, Cutwidth, and Good Drawings on Arbitrary Point Sets</title>
<link href="https://hdl.handle.net/1721.1/165113" rel="alternate"/>
<author>
<name>Pi, Oriol S.</name>
</author>
<id>https://hdl.handle.net/1721.1/165113</id>
<updated>2026-04-24T03:15:43Z</updated>
<published>2025-01-22T00:00:00Z</published>
<summary type="text">Pair Crossing Number, Cutwidth, and Good Drawings on Arbitrary Point Sets
Pi, Oriol S.
Determining whether there exists a graph such that its crossing number and pair crossing number are distinct is an important open problem in geometric graph theory. We show that cr ( G ) = O ( pcr ( G ) 3 / 2 ) for every graph G, improving the previous best bound by a logarithmic factor. Answering a question of Pach and Tóth, we prove that the bisection width (and, in fact, the cutwidth as well) of a graph G with degree sequence d 1 , d 2 , ⋯ , d n satisfies bw ( G ) = O ( pcr ( G ) + ∑ k = 1 n d k 2 ) . Then we show that there is a constant C ≥ 1 such that the following holds: For any graph G of order n and any set S of at least n C points in general position on the plane, G admits a straight-line drawing which maps the vertices to points of S and has no more than O log n · pcr ( G ) + ∑ k = 1 n d k 2 crossings. Our proofs rely on a slightly modified version of a separator theorem for string graphs by Lee, which might be of independent interest.
</summary>
<dc:date>2025-01-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Emergence of a proton exchange-based isomerization and lactonization mechanism in the plant coumarin synthase COSY</title>
<link href="https://hdl.handle.net/1721.1/165112" rel="alternate"/>
<author>
<name>Kim, Colin Y</name>
</author>
<author>
<name>Mitchell, Andrew J</name>
</author>
<author>
<name>Kastner, David W</name>
</author>
<author>
<name>Albright, Claire E</name>
</author>
<author>
<name>Gutierrez, Michael A</name>
</author>
<author>
<name>Glinkerman, Christopher M</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<author>
<name>Weng, Jing-Ke</name>
</author>
<id>https://hdl.handle.net/1721.1/165112</id>
<updated>2026-04-24T03:15:07Z</updated>
<published>2023-02-03T00:00:00Z</published>
<summary type="text">Emergence of a proton exchange-based isomerization and lactonization mechanism in the plant coumarin synthase COSY
Kim, Colin Y; Mitchell, Andrew J; Kastner, David W; Albright, Claire E; Gutierrez, Michael A; Glinkerman, Christopher M; Kulik, Heather J; Weng, Jing-Ke
Plants contain rapidly evolving specialized enzymes that support the biosynthesis of functionally diverse natural products. In coumarin biosynthesis, a BAHD acyltransferase-family enzyme COSY was recently discovered to accelerate coumarin formation as the only known BAHD enzyme to catalyze an intramolecular acyl transfer reaction. Here we investigate the structural and mechanistic basis for COSY’s coumarin synthase activity. Our structural analyses reveal an unconventional active-site configuration adapted to COSY’s specialized activity. Through mutagenesis studies and deuterium exchange experiments, we identify a unique proton exchange mechanism at the α-carbon of the o-hydroxylated trans-hydroxycinnamoyl-CoA substrates during the catalytic cycle of COSY. Quantum mechanical cluster modeling and molecular dynamics further support this key mechanism for lowering the activation energy of the rate-limiting trans-to-cis isomerization step in coumarin production. This study unveils an unconventional catalytic mechanism mediated by a BAHD-family enzyme, and sheds light on COSY’s evolutionary origin and its recruitment to coumarin biosynthesis in eudicots.
</summary>
<dc:date>2023-02-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Identification and Validation of Cyclic Peptides with Mucin-Selective, Location-Specific Binding in the Gastrointestinal Tract</title>
<link href="https://hdl.handle.net/1721.1/165111" rel="alternate"/>
<author>
<name>Subramanian, Deepak A</name>
</author>
<author>
<name>Chin, Austin</name>
</author>
<author>
<name>Shi, Yunhua</name>
</author>
<author>
<name>Liu, Gary W</name>
</author>
<author>
<name>Langer, Robert</name>
</author>
<author>
<name>Traverso, Giovanni</name>
</author>
<id>https://hdl.handle.net/1721.1/165111</id>
<updated>2026-03-17T03:10:02Z</updated>
<published>2025-04-11T00:00:00Z</published>
<summary type="text">Identification and Validation of Cyclic Peptides with Mucin-Selective, Location-Specific Binding in the Gastrointestinal Tract
Subramanian, Deepak A; Chin, Austin; Shi, Yunhua; Liu, Gary W; Langer, Robert; Traverso, Giovanni
Oral drug delivery is a widely preferred method of drug administration due to its ease of use and convenience for patients. Localization of drug release in the gastrointestinal (GI) tract is important to treat localized diseases and maximize drug absorption. However, achieving drug localization in the dynamic GI tract is challenging. To address this challenge, we leveraged the geographic diversity of the GI tract by targeting its mucus layers, which coat the epithelial surfaces. These layers, composed of mucin glycoproteins, are synthesized with unique chemical compositions and expressed in different regions, making them ideal targets for drug localization. In this article, we identify cyclic peptides that bind selectively to MUC2 (in the intestines) and MUC5AC (in the stomach), serving as targeting ligands to these regions of the GI tract. We demonstrate the effectiveness of these peptides through in vitro, ex vivo, and in vivo experiments, showing that incorporating these targeting ligands can increase binding and selectivity 2-fold to the desired regions, thus potentially overcoming challenges with localizing drug distribution in oral delivery. These results indicate that cyclic peptides can be used to localize drug cargoes at certain sites in the body compared to free drugs.
</summary>
<dc:date>2025-04-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Pd-Catalyzed Amination of Base-Sensitive Five-Membered Heteroaryl Halides with Aliphatic Amines</title>
<link href="https://hdl.handle.net/1721.1/165110" rel="alternate"/>
<author>
<name>Reichert, Elaine C</name>
</author>
<author>
<name>Feng, Kaibo</name>
</author>
<author>
<name>Sather, Aaron C</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<id>https://hdl.handle.net/1721.1/165110</id>
<updated>2026-03-14T05:51:44Z</updated>
<published>2023-01-31T00:00:00Z</published>
<summary type="text">Pd-Catalyzed Amination of Base-Sensitive Five-Membered Heteroaryl Halides with Aliphatic Amines
Reichert, Elaine C; Feng, Kaibo; Sather, Aaron C; Buchwald, Stephen L
We report a versatile and functional-group-tolerant method for the Pd-catalyzed C–N cross-coupling of five-membered heteroaryl halides with primary and secondary amines, an important but underexplored transformation. Coupling reactions of challenging, pharmaceutically relevant heteroarenes, such as 2-H-1,3-azoles, are reported in good-to-excellent yields. High-yielding coupling reactions of a wide set of five-membered heteroaryl halides with sterically demanding α-branched cyclic amines and acyclic secondary amines are reported for the first time. The key to the broad applicability of this method is the synergistic combination of (1) the moderate-strength base NaOTMS, which limits base-mediated decomposition of sensitive five-membered heteroarenes that ultimately leads to catalyst deactivation, and (2) the use of a GPhos-supported Pd catalyst, which effectively resists heteroarene-induced catalyst deactivation while promoting efficient coupling, even for challenging and sterically demanding amines. Cross-coupling reactions between a wide variety of five-membered heteroaryl halides and amines are demonstrated, including eight examples involving densely functionalized medicinal chemistry building blocks.
</summary>
<dc:date>2023-01-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Abiotic peptides as carriers of information for the encoding of small-molecule library synthesis</title>
<link href="https://hdl.handle.net/1721.1/165109" rel="alternate"/>
<author>
<name>Rössler, Simon L</name>
</author>
<author>
<name>Grob, Nathalie M</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<author>
<name>Pentelute, Bradley L</name>
</author>
<id>https://hdl.handle.net/1721.1/165109</id>
<updated>2026-03-14T05:51:45Z</updated>
<published>2023-03-02T00:00:00Z</published>
<summary type="text">Abiotic peptides as carriers of information for the encoding of small-molecule library synthesis
Rössler, Simon L; Grob, Nathalie M; Buchwald, Stephen L; Pentelute, Bradley L
Encoding small-molecule information in DNA has been leveraged to accelerate the discovery of ligands for therapeutic targets such as proteins. However, oligonucleotide-based encoding is hampered by inherent limitations of information stability and density. In this study, we establish abiotic peptides for next-generation information storage and apply them for the encoding of diverse small-molecule synthesis. The chemical stability of the peptide-based tag allows the use of palladium-mediated reactions to efficiently synthesize peptide-encoded libraries (PELs) with broad chemical diversity and high purity. We demonstrate the successful de novo discovery of small-molecule protein ligands from PELs by affinity selection against carbonic anhydrase IX and the oncogenic protein targets BRD4(1) and MDM2. Collectively, this work establishes abiotic peptides as carriers of information for the encoding of small-molecule synthesis, leveraged herein for the discovery of protein ligands.
</summary>
<dc:date>2023-03-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Studying Regioisomer Formation in the Pd‐Catalyzed Fluorination of Cyclic Vinyl Triflates: Evidence for in situ Ligand Modification</title>
<link href="https://hdl.handle.net/1721.1/165108" rel="alternate"/>
<author>
<name>Ye, Yuxuan</name>
</author>
<author>
<name>Kim, Seoung‐Tae</name>
</author>
<author>
<name>King, Ryan P</name>
</author>
<author>
<name>Baik, Mu‐Hyun</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<id>https://hdl.handle.net/1721.1/165108</id>
<updated>2026-03-14T05:51:43Z</updated>
<published>2023-02-12T00:00:00Z</published>
<summary type="text">Studying Regioisomer Formation in the Pd‐Catalyzed Fluorination of Cyclic Vinyl Triflates: Evidence for in situ Ligand Modification
Ye, Yuxuan; Kim, Seoung‐Tae; King, Ryan P; Baik, Mu‐Hyun; Buchwald, Stephen L
Pd-catalyzed nucleophilic fluorination reactions are important methods for the synthesis of fluoroarenes and fluoroalkenes. However, these reactions can generate a mixture of regioisomeric products that are often difficult to separate. While investigating the Pd-catalyzed fluorination of cyclic vinyl triflates, we observed that the addition of a substoichiometric quantity of TESCF3 significantly improved the regioselectivity of the reaction. Herein, we report a combined experimental and computational study on the mechanism of this transformation focusing on the role of TESCF3. The poor regioselectivity of the reaction in the absence of additives results from the formation of LPd-cyclohexyne complexes (L=biaryl monophosphine ligand). When TESCF3 is added to the reaction mixture, the generation of the Pd-cyclohexyne complexes is diminished by an unexpected pathway involving the dearomatization of the ligand by nucleophilic attack from a trifluoromethyl anion (CF3−).
</summary>
<dc:date>2023-02-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Room-Temperature Cu-Catalyzed Amination of Aryl Bromides Enabled by DFT-Guided Ligand Design</title>
<link href="https://hdl.handle.net/1721.1/165107" rel="alternate"/>
<author>
<name>Kim, Seoung-Tae</name>
</author>
<author>
<name>Strauss, Michael J</name>
</author>
<author>
<name>Cabré, Albert</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<id>https://hdl.handle.net/1721.1/165107</id>
<updated>2026-03-14T05:51:46Z</updated>
<published>2023-03-16T00:00:00Z</published>
<summary type="text">Room-Temperature Cu-Catalyzed Amination of Aryl Bromides Enabled by DFT-Guided Ligand Design
Kim, Seoung-Tae; Strauss, Michael J; Cabré, Albert; Buchwald, Stephen L
Ullmann-type C–N coupling reactions represent an important alternative to well-established Pd-catalyzed approaches due to the differing reactivity and the lower cost of Cu. While the design of anionic Cu ligands, particularly those by Ma, has enabled the coupling of various classes of aryl halides and alkyl amines, most methods require conditions that can limit their utility on complex substrates. Herein, we disclose the development of anionic N1,N2-diarylbenzene-1,2-diamine ligands that promote the Cu-catalyzed amination of aryl bromides under mild conditions. Guided by DFT calculations, these ligands were designed to (1) increase the electron density on Cu, thereby increasing the rate of oxidative addition of aryl bromides, and (2) stabilize the active anionic CuI complex via a π-interaction. Under optimized conditions, structurally diverse aryl and heteroaryl bromides and a broad range of alkyl amine nucleophiles, including pharmaceuticals bearing multiple functional groups, were efficiently coupled at room temperature. Combined computational and experimental studies support a mechanism of C–N bond formation that follows a catalytic cycle akin to the well-explored Pd-catalyzed variants. Modification of the ligand structure to include a naphthyl residue resulted in a lower energy barrier to oxidative addition, providing a 30-fold rate increase relative to what is seen with other ligands. Collectively, these results establish a new class of anionic ligands for Cu-catalyzed C–N couplings, which we anticipate may be extended to other Cu-catalyzed C–heteroatom and C–C bond-forming reactions.
</summary>
<dc:date>2023-03-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Stereoselective Synthesis of Trisubstituted Alkenes via Copper Hydride-Catalyzed Alkyne Hydroalkylation</title>
<link href="https://hdl.handle.net/1721.1/165106" rel="alternate"/>
<author>
<name>Kutateladze, Dennis A</name>
</author>
<author>
<name>Mai, Binh Khanh</name>
</author>
<author>
<name>Dong, Yuyang</name>
</author>
<author>
<name>Zhang, Yu</name>
</author>
<author>
<name>Liu, Peng</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<id>https://hdl.handle.net/1721.1/165106</id>
<updated>2026-03-14T05:51:40Z</updated>
<published>2023-08-04T00:00:00Z</published>
<summary type="text">Stereoselective Synthesis of Trisubstituted Alkenes via Copper Hydride-Catalyzed Alkyne Hydroalkylation
Kutateladze, Dennis A; Mai, Binh Khanh; Dong, Yuyang; Zhang, Yu; Liu, Peng; Buchwald, Stephen L
Alkenes are ubiquitous in organic chemistry, yet many classes of alkenes remain challenging to access by current synthetic methodology. Herein, we report a copper hydride-catalyzed approach for the synthesis of Z-configured trisubstituted alkenes with high stereo- and regioselectivity via alkyne hydroalkylation. A DTBM-dppf-supported Cu catalyst was found to be optimal, providing a substantial increase in product yield compared to reactions conducted with dppf as the ligand. DFT calculations show that the DTBM substitution leads to the acceleration of alkyne hydrocupration through combined ground and transition state effects related to preventing catalyst dimerization and enhancing catalyst–substrate dispersion interactions, respectively. Alkyne hydroalkylation was successfully demonstrated with methyl and larger alkyl tosylate electrophiles to produce a variety of (hetero)aryl-substituted alkenes in moderate to high yields with complete selectivity for the Z stereochemically configured products. In the formation of the key C–C bond, computational studies revealed a direct SN2 pathway for alkylation of the vinylcopper intermediate with in situ-formed alkyl iodides.
</summary>
<dc:date>2023-08-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Room‐Temperature Copper‐Catalyzed Etherification of Aryl Bromides</title>
<link href="https://hdl.handle.net/1721.1/165105" rel="alternate"/>
<author>
<name>Strauss, Michael J</name>
</author>
<author>
<name>Greaves, Megan E</name>
</author>
<author>
<name>Kim, Seoung‐Tae</name>
</author>
<author>
<name>Teijaro, Christiana N</name>
</author>
<author>
<name>Schmidt, Michael A</name>
</author>
<author>
<name>Scola, Paul M</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<id>https://hdl.handle.net/1721.1/165105</id>
<updated>2026-03-13T03:07:34Z</updated>
<published>2024-02-15T00:00:00Z</published>
<summary type="text">Room‐Temperature Copper‐Catalyzed Etherification of Aryl Bromides
Strauss, Michael J; Greaves, Megan E; Kim, Seoung‐Tae; Teijaro, Christiana N; Schmidt, Michael A; Scola, Paul M; Buchwald, Stephen L
We disclose the development of a Cu-catalyzed C−O coupling method utilizing a new N1,N2-diarylbenzene-1,2-diamine ligand, L8. Under optimized reaction conditions, structurally diverse aryl and heteroaryl bromides underwent efficient coupling with a variety of alcohols at room temperature using an L8-based catalyst. Notably, the L8-derived catalyst exhibited enhanced activity when compared to the L4-based system previously disclosed for C−N coupling, namely the ability to functionalize aryl bromides containing acidic functional groups. Mechanistic studies demonstrate that C−O coupling utilizing L8 ⋅ Cu involves rate-limiting alkoxide transmetallation, resulting in a mechanism of C−O bond formation that is distinct from previously described Pd-, Cu-, or Ni-based systems. This lower energy pathway leads to rapid C−O bond formation; a 7-fold increase relative to what is seen with other ligands. The results presented in this report overcome limitations in previously described C−O coupling methods and introduce a new ligand that we anticipate may be useful in other Cu-catalyzed C-heteroatom bond-forming reactions.
</summary>
<dc:date>2024-02-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>CuH-Catalyzed Regio- and Enantioselective Formal Hydroformylation of Vinyl Arenes</title>
<link href="https://hdl.handle.net/1721.1/165104" rel="alternate"/>
<author>
<name>Garhwal, Subhash</name>
</author>
<author>
<name>Dong, Yuyang</name>
</author>
<author>
<name>Mai, Binh Khanh</name>
</author>
<author>
<name>Liu, Peng</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<id>https://hdl.handle.net/1721.1/165104</id>
<updated>2026-03-13T03:07:21Z</updated>
<published>2024-05-09T00:00:00Z</published>
<summary type="text">CuH-Catalyzed Regio- and Enantioselective Formal Hydroformylation of Vinyl Arenes
Garhwal, Subhash; Dong, Yuyang; Mai, Binh Khanh; Liu, Peng; Buchwald, Stephen L
A highly enantioselective formal hydroformylation of vinyl arenes enabled by copper hydride (CuH) catalysis is reported. Key to the success of the method was the use of the mild Lewis acid zinc triflate to promote the formation of oxocarbenium electrophiles through the activation of diethoxymethyl acetate. Using the newly developed protocol, a broad range of vinyl arene substrates underwent efficient hydroacetalization reactions to provide access to highly enantioenriched α-aryl acetal products in good yields with exclusively branched regioselectivity. The acetal products could be converted to the corresponding aldehydes, alcohols, and amines with full preservation of the enantiomeric purity. Density functional theory studies support that the key C–C bond-forming event between the alkyl copper intermediate and the oxocarbenium electrophile takes place with inversion of configuration of the Cu–C bond in a backside SE2-type mechanism.
</summary>
<dc:date>2024-05-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cu-Catalyzed Amination of Base-Sensitive Aryl Bromides and the Chemoselective N- and O-Arylation of Amino Alcohols</title>
<link href="https://hdl.handle.net/1721.1/165103" rel="alternate"/>
<author>
<name>Strauss, Michael J</name>
</author>
<author>
<name>Liu, Kaylee X</name>
</author>
<author>
<name>Greaves, Megan E</name>
</author>
<author>
<name>Dahl, Jakob C</name>
</author>
<author>
<name>Kim, Seoung-Tae</name>
</author>
<author>
<name>Wu, Yong-Jin</name>
</author>
<author>
<name>Schmidt, Michael A</name>
</author>
<author>
<name>Scola, Paul M</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<id>https://hdl.handle.net/1721.1/165103</id>
<updated>2026-03-13T03:07:37Z</updated>
<published>2024-06-26T00:00:00Z</published>
<summary type="text">Cu-Catalyzed Amination of Base-Sensitive Aryl Bromides and the Chemoselective N- and O-Arylation of Amino Alcohols
Strauss, Michael J; Liu, Kaylee X; Greaves, Megan E; Dahl, Jakob C; Kim, Seoung-Tae; Wu, Yong-Jin; Schmidt, Michael A; Scola, Paul M; Buchwald, Stephen L
We report a general and functional-group-tolerant method for the Cu-catalyzed amination of base-sensitive aryl bromides including substrates possessing acidic functional groups and small five-membered heteroarenes. The results presented herein substantially expand the scope of Cu-catalyzed C–N coupling reactions. The combination of L8, an anionic N1,N2-diarylbenzene-1,2-diamine ligand, along with the mild base NaOTMS leads to the formation of a stable yet reactive catalyst that resists deactivation from coordination to heterocycles or charged intermediates. This system enables the use of low catalyst and ligand loadings. Exploiting the differences in nucleophile deprotonation in C–O and C–N coupling reactions catalyzed by Cu·L8 we developed a method to chemoselectively N- and O-arylate a variety of amino alcohol substrates. Employing NaOt-Bu as the base resulted exclusively in C–O coupling when the amino alcohols featured primary alcohols and more hindered amines or aniline groups. Utilizing NaOTMS enabled the ability to override the steric-based selectivity of these reactions completely and exclusively promoted C–N coupling regardless of the structure of the amino alcohol. The ability to invert the observed chemoselectivity is distinct from previously described methods that require protecting group manipulations or rely entirely on steric effects to control reactivity. These results substantially improve the scope of Cu-catalyzed C–N coupling reactions using N1,N2-diarylbenzene-1,2-diamine ligands and introduce a new chemoselective method to arylate amino alcohols.
</summary>
<dc:date>2024-06-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Copper-Catalyzed Amination of Aryl Chlorides under Mild Reaction Conditions</title>
<link href="https://hdl.handle.net/1721.1/165102" rel="alternate"/>
<author>
<name>Ai, Han-Jun</name>
</author>
<author>
<name>Kim, Seoung-Tae</name>
</author>
<author>
<name>Liu, Cecilia</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<id>https://hdl.handle.net/1721.1/165102</id>
<updated>2026-03-13T03:07:29Z</updated>
<published>2024-09-16T00:00:00Z</published>
<summary type="text">Copper-Catalyzed Amination of Aryl Chlorides under Mild Reaction Conditions
Ai, Han-Jun; Kim, Seoung-Tae; Liu, Cecilia; Buchwald, Stephen L
We report a mild method for the copper-catalyzed amination of aryl chlorides. Key to the success of the method was the use of highly sterically encumbered &lt;i&gt;N&lt;/i&gt;&lt;sup&gt;1&lt;/sup&gt;,&lt;i&gt;N&lt;/i&gt;&lt;sup&gt;2&lt;/sup&gt;-diaryl diamine ligands which resist catalyst deactivation, allowing reactions to proceed at significantly lower temperatures and with a broader scope than current protocols. A sequence of highly chemoselective C-N and C-O cross-coupling reactions were demonstrated, and mechanistic studies indicate that oxidative addition of the Cu catalyst to the aryl chlorides is rate-limiting. We anticipate that the design principles disclosed herein will help motivate further advances in Cu-catalyzed transformations of aryl chlorides.
</summary>
<dc:date>2024-09-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of a Deactivation-Resistant Dialkylbiarylphosphine Ligand for Pd-Catalyzed Arylation of Secondary Amines</title>
<link href="https://hdl.handle.net/1721.1/165101" rel="alternate"/>
<author>
<name>Feng, Kaibo</name>
</author>
<author>
<name>Raguram, Elaine Reichert</name>
</author>
<author>
<name>Howard, James R</name>
</author>
<author>
<name>Peters, Ellyn</name>
</author>
<author>
<name>Liu, Cecilia</name>
</author>
<author>
<name>Sigman, Matthew S</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<id>https://hdl.handle.net/1721.1/165101</id>
<updated>2026-03-13T03:07:27Z</updated>
<published>2024-09-17T00:00:00Z</published>
<summary type="text">Development of a Deactivation-Resistant Dialkylbiarylphosphine Ligand for Pd-Catalyzed Arylation of Secondary Amines
Feng, Kaibo; Raguram, Elaine Reichert; Howard, James R; Peters, Ellyn; Liu, Cecilia; Sigman, Matthew S; Buchwald, Stephen L
Despite the prevalence of N-heteroarenes in small-molecule pharmaceuticals, Pd-catalyzed C-N cross-coupling reactions of aryl halides and amines containing these rings remain challenging due to their ability to displace the supporting ligand via coordination to the metal center. To address this limitation, we report the development of a highly robust Pd catalyst supported by a new dialkylbiarylphosphine ligand, FPhos. The FPhos-supported catalyst effectively resists N-heteroarene-mediated catalyst deactivation to readily promote C-N coupling between a wide variety of Lewis-basic aryl halides and secondary amines, including densely functionalized pharmaceuticals. Mechanistic and structural investigations, as well as principal component analysis and density functional theory, elucidated two key design features that enable FPhos to overcome the limitations of previous ligands. First, the ligated Pd complex is stabilized through its conformational preference for the O-bound isomer, which likely resists coordination by N-heteroarenes. Second, 3',5'-disubstitution on the non-phosphorus-containing ring of FPhos creates the ideal steric environment around the Pd center, which facilitates binding by larger secondary amines while mitigating the formation of off-cycle palladacycle species.
</summary>
<dc:date>2024-09-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Kinetic Modeling Enables Understanding of Off-Cycle Processes in Pd-Catalyzed Amination of Five-Membered Heteroaryl Halides</title>
<link href="https://hdl.handle.net/1721.1/165100" rel="alternate"/>
<author>
<name>Raguram, Elaine Reichert</name>
</author>
<author>
<name>Dahl, Jakob C</name>
</author>
<author>
<name>Jensen, Klavs F</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<id>https://hdl.handle.net/1721.1/165100</id>
<updated>2026-03-13T03:07:30Z</updated>
<published>2024-11-20T00:00:00Z</published>
<summary type="text">Kinetic Modeling Enables Understanding of Off-Cycle Processes in Pd-Catalyzed Amination of Five-Membered Heteroaryl Halides
Raguram, Elaine Reichert; Dahl, Jakob C; Jensen, Klavs F; Buchwald, Stephen L
The mechanism of Pd-catalyzed amination of five-membered heteroaryl halides was investigated by integrating experimental kinetic analysis with kinetic modeling through predictive testing and likelihood ratio analysis, revealing an atypical productive coupling pathway and multiple off-cycle events. The GPhos-supported Pd catalyst, along with the moderate-strength base NaOTMS, was previously found to promote efficient coupling between five-membered heteroaryl halides and secondary amines. However, slight deviations from the optimal concentration, temperature, and/or solvent resulted in significantly lower yields, contrary to typical reaction optimization trends. We found that the coupling of 4-bromothiazole with piperidine proceeds through an uncommon mechanism in which the NaOTMS base, rather than the amine, binds first to the oxidative addition complex; the resulting OTMS-bound Pd species is the resting state. Formation of the Pd-amido complex via base/amine exchange was identified as the turnover-limiting step, unlike other reported catalyst systems for which reductive elimination is turnover-limiting. We determined that the amine-bound Pd complex, usually an on-cycle intermediate, is instead a reversibly generated off-cycle species, and that base-mediated decomposition of 4-bromothiazole is the primary irreversible catalyst deactivation pathway. Predictive testing and kinetic modeling were key to the identification of these off-cycle processes, providing insight into minor mechanistic pathways that are difficult to observe experimentally. Collectively, this report reveals the unique enabling features of the Pd-GPhos/NaOTMS system, implementing mechanistic insights to improve the yields of particularly challenging coupling reactions. Moreover, these findings highlight the utility of applying predictive tests to kinetic models for the rapid evaluation of mechanistic possibilities in small-molecule catalytic systems.
</summary>
<dc:date>2024-11-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Characterization of the response of radiochromic film to quasi-monoenergetic x rays through a cross-calibration with image plates</title>
<link href="https://hdl.handle.net/1721.1/165099" rel="alternate"/>
<author>
<name>Buschmann, BI</name>
</author>
<author>
<name>Cufari, M</name>
</author>
<author>
<name>Vanderloo, N</name>
</author>
<author>
<name>Vargas, J</name>
</author>
<author>
<name>Foo, BC</name>
</author>
<author>
<name>DeVault, A</name>
</author>
<author>
<name>Dannhoff, SG</name>
</author>
<author>
<name>Evans, TE</name>
</author>
<author>
<name>Johnson, TM</name>
</author>
<author>
<name>Kunimune, JH</name>
</author>
<author>
<name>Lawrence, Y</name>
</author>
<author>
<name>Pearcy, JA</name>
</author>
<author>
<name>Reichelt, BL</name>
</author>
<author>
<name>Wink, CW</name>
</author>
<author>
<name>Russell, L</name>
</author>
<author>
<name>Gatu Johnson, M</name>
</author>
<author>
<name>Petrasso, RD</name>
</author>
<author>
<name>Frenje, JA</name>
</author>
<id>https://hdl.handle.net/1721.1/165099</id>
<updated>2026-03-13T03:07:23Z</updated>
<published>2024-09-20T00:00:00Z</published>
<summary type="text">Characterization of the response of radiochromic film to quasi-monoenergetic x rays through a cross-calibration with image plates
Buschmann, BI; Cufari, M; Vanderloo, N; Vargas, J; Foo, BC; DeVault, A; Dannhoff, SG; Evans, TE; Johnson, TM; Kunimune, JH; Lawrence, Y; Pearcy, JA; Reichelt, BL; Wink, CW; Russell, L; Gatu Johnson, M; Petrasso, RD; Frenje, JA
Radiochromic film (RCF) and image plates (IPs) are both commonly used detectors in diagnostics fielded at inertial confinement fusion (ICF) and high-energy-density physics (HEDP) research facilities. Due to the intense x-ray background in all ICF/HEDP experiments, accurately calibrating the optical density of RCF as a function of x-ray dose, and the photostimulated luminescence per photon of IPs as a function of x-ray energy, is necessary for interpreting experimental results. Various measurements of the sensitivity curve of different IPs to x rays have been performed [Izumi et al., Proc. SPIE 8850, 885006 (2013) and Rosenberg et al., Rev. Sci. Instrum. 90(1), 013506 (2019)]; however, calibrating RCF is a tedious process that depends on factors such as the orientation in which the RCF is scanned in the film scanner and the batch of RCF used. These issues can be mitigated by cross-calibrating RCF with IPs to enable the use of IPs for the determination of dose on the RCF without scanning the RCF. Here, the first cross-calibration of RCF with IPs to quasi-monoenergetic titanium, copper, and molybdenum K-line x rays is presented. It is found that the IP-inferred dose rates on the RCF for the Ti and Mo x rays agree well with the measured dose rates, while the IP-inferred dose rate for the Cu x rays is larger than the measured dose rate by ∼2×. Explanations for this discrepancy and plans for future work are discussed.
</summary>
<dc:date>2024-09-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Determination of the response for the National Ignition Facility particle time of flight (PTOF) detector using single particle counting</title>
<link href="https://hdl.handle.net/1721.1/165098" rel="alternate"/>
<author>
<name>Lawrence, Y</name>
</author>
<author>
<name>Reichelt, BL</name>
</author>
<author>
<name>Wink, CW</name>
</author>
<author>
<name>Rigon, G</name>
</author>
<author>
<name>Johnson, M Gatu</name>
</author>
<author>
<name>Li, CK</name>
</author>
<author>
<name>Frenje, JA</name>
</author>
<id>https://hdl.handle.net/1721.1/165098</id>
<updated>2026-03-13T03:07:36Z</updated>
<published>2024-10-02T00:00:00Z</published>
<summary type="text">Determination of the response for the National Ignition Facility particle time of flight (PTOF) detector using single particle counting
Lawrence, Y; Reichelt, BL; Wink, CW; Rigon, G; Johnson, M Gatu; Li, CK; Frenje, JA
The Particle Time of Flight (PTOF) detector is a chemical vapor deposition diamond-based detector used to measure bang times in low-yield (≲ 1015 neutrons) experiments at the National Ignition Facility (NIF) at Lawrence Livermore National Laboratory (LLNL). Historically, the impulse response for PTOF diamond detectors has been obtained from x-ray timing shots on the NIF and shots on the MegaRay pulsed electron accelerator at LLNL. The impulse response may alternatively be obtained using single particle interactions with the detector, at substantially less cost and higher frequency compared to NIF timing shots, which typically occur months apart. Here, the response of a PTOF detector setup is characterized by statistically averaging a large number of single particle waveforms. A high fidelity instrument response function can be constructed in this way. This is confirmed by comparison of the single particle counting-constructed response to the impulse response function measured for the same detector at LLNL’s MegaRay facility.
</summary>
<dc:date>2024-10-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of a compact magnetic spectrometer for use at the OMEGA Laser Facility and the National Ignition Facility</title>
<link href="https://hdl.handle.net/1721.1/165097" rel="alternate"/>
<author>
<name>Pearcy, JA</name>
</author>
<author>
<name>Russell, L</name>
</author>
<author>
<name>Kabadi, NV</name>
</author>
<author>
<name>Johnson, TM</name>
</author>
<author>
<name>Adrian, PA</name>
</author>
<author>
<name>Gatu-Johnson, M</name>
</author>
<author>
<name>Casco, E</name>
</author>
<author>
<name>Palmisano, K</name>
</author>
<author>
<name>Gates, G</name>
</author>
<author>
<name>Burgett, T</name>
</author>
<author>
<name>Scott, M</name>
</author>
<author>
<name>Petrasso, RD</name>
</author>
<author>
<name>Li, CK</name>
</author>
<author>
<name>Frenje, J</name>
</author>
<id>https://hdl.handle.net/1721.1/165097</id>
<updated>2026-03-13T03:07:32Z</updated>
<published>2024-10-03T00:00:00Z</published>
<summary type="text">Development of a compact magnetic spectrometer for use at the OMEGA Laser Facility and the National Ignition Facility
Pearcy, JA; Russell, L; Kabadi, NV; Johnson, TM; Adrian, PA; Gatu-Johnson, M; Casco, E; Palmisano, K; Gates, G; Burgett, T; Scott, M; Petrasso, RD; Li, CK; Frenje, J
Measurement of proton spectra is an important diagnostic for a variety of high energy density physics experiments. Current diagnostics are either not designed to capture the spectrum of low-energy protons or are unsuitable for high debris experiments. To bridge the gap, a new CR-39 based compact magnetic spectrometer (MagSpec) has been developed to measure proton spectra in the 1–20 MeV energy range, with a particular focus on the low-energy (1–6 MeV) spectrum, for use in experiments at the OMEGA Laser Facility and the National Ignition Facility (NIF). In the MagSpec diagnostic, protons of different energies are dispersed as they pass through a magnetic field before impinging on a differentially filtered CR-39 surface, resulting in a spatial distribution of CR-39 tracks that corresponds to the energy spectrum. In this paper, we discuss details of the design and implementation of MagSpec on the NIF and OMEGA.
</summary>
<dc:date>2024-10-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Temperature stabilization of a lab space at 10 mK-level over a day</title>
<link href="https://hdl.handle.net/1721.1/165096" rel="alternate"/>
<author>
<name>Fife, Dylan</name>
</author>
<author>
<name>Shin, Dong-Chel</name>
</author>
<author>
<name>Sudhir, Vivishek</name>
</author>
<id>https://hdl.handle.net/1721.1/165096</id>
<updated>2026-03-13T03:07:26Z</updated>
<published>2024-09-27T00:00:00Z</published>
<summary type="text">Temperature stabilization of a lab space at 10 mK-level over a day
Fife, Dylan; Shin, Dong-Chel; Sudhir, Vivishek
Temperature fluctuations over long time scales (≳ 1 h) are an insidious problem for precision measurements. In optical laboratories, the primary effect of temperature fluctuations is drifts in optical circuits over spatial scales of a few meters and temporal scales extending beyond a few minutes. We present a lab-scale environment temperature control system approaching 10 mK-level temperature instability across a lab for integration times above an hour and extending to a day. This is achieved by passive isolation of the laboratory space from the building walls using a circulating air gap and an active control system feeding back to heating coils at the outlet of the laboratory’s Heating-Ventilation-Air-Conditioning (HVAC) unit. These techniques together result in 20 dB suppression of the temperature power spectrum across the lab at 10−4 Hz—approaching the limit set by statistical coherence of the temperature field—and 10 mK Allan deviation around 15 °C after an hour of averaging, which is an order of magnitude better than any previous report for a full laboratory.
</summary>
<dc:date>2024-09-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Incentives to Comply with the Minimum Wage in the United States and the United Kingdom</title>
<link href="https://hdl.handle.net/1721.1/165095" rel="alternate"/>
<author>
<name>Stansbury, Anna</name>
</author>
<id>https://hdl.handle.net/1721.1/165095</id>
<updated>2026-03-13T03:07:19Z</updated>
<published>2025-01-01T00:00:00Z</published>
<summary type="text">Incentives to Comply with the Minimum Wage in the United States and the United Kingdom
Stansbury, Anna
There is substantial evidence of minimum wage non-compliance in the United States and the United Kingdom. In this article, the author compiles new, comprehensive data on the costs that minimum wage violators incur when non-compliance is detected. In both countries, the costs violators face are often little more than the money they saved by underpaying. To have an incentive to comply under existing penalty regimes, typical US firms would thus have to expect a 47% to 83% probability of detection by the Department of Labor (DOL), or a 25% probability of a successful Fair Labor Standards Act (FLSA) suit. In the United Kingdom, typical firms would have to expect a 44% to 56% probability of detection. Actual probabilities of detection are substantially lower than this for many firms and would likely remain so even with realistic increases in enforcement capacity. Improved enforcement alone is thus insufficient: Expected penalties must also substantially increase to ensure that most firms have an incentive to comply.
</summary>
<dc:date>2025-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Non-Euclidean motion planning with graphs of geodesically convex sets</title>
<link href="https://hdl.handle.net/1721.1/165094" rel="alternate"/>
<author>
<name>Cohn, Thomas</name>
</author>
<author>
<name>Petersen, Mark</name>
</author>
<author>
<name>Simchowitz, Max</name>
</author>
<author>
<name>Tedrake, Russ</name>
</author>
<id>https://hdl.handle.net/1721.1/165094</id>
<updated>2026-03-13T03:07:12Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Non-Euclidean motion planning with graphs of geodesically convex sets
Cohn, Thomas; Petersen, Mark; Simchowitz, Max; Tedrake, Russ
Computing optimal, collision-free trajectories for high-dimensional systems is a challenging and important problem. Sampling-based planners struggle with the dimensionality, whereas trajectory optimizers may get stuck in local minima due to inherent nonconvexities in the optimization landscape. The use of mixed-integer programming to encapsulate these nonconvexities and find globally optimal trajectories has recently shown great promise, thanks in part to tight convex relaxations and efficient approximation strategies that greatly reduce runtimes. These approaches were previously limited to Euclidean configuration spaces, precluding their use with mobile bases or continuous revolute joints. In this paper, we handle such scenarios by modeling configuration spaces as Riemannian manifolds, and we describe a reduction procedure for the zero-curvature case to a mixed-integer convex optimization problem. We further present a method for obtaining approximate solutions via piecewise-linear approximations that is applicable to manifolds of arbitrary curvature. We demonstrate our results on various robot platforms, including producing efficient collision-free trajectories for a PR2 bimanual mobile manipulator.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Extended state infrastructure power in an age of networked competition: The cases of Thailand and Taiwan</title>
<link href="https://hdl.handle.net/1721.1/165093" rel="alternate"/>
<author>
<name>Stokols, Andrew</name>
</author>
<author>
<name>Kollar, Justin</name>
</author>
<id>https://hdl.handle.net/1721.1/165093</id>
<updated>2026-03-13T03:07:28Z</updated>
<published>2024-11-17T00:00:00Z</published>
<summary type="text">Extended state infrastructure power in an age of networked competition: The cases of Thailand and Taiwan
Stokols, Andrew; Kollar, Justin
Scholars have highlighted the emergence of infrastructure as a key domain in the struggle over network centrality in what some call the ‘Second Cold War’ between the U.S. and China. We qualify this ‘infrastructural turn’ by drawing attention to the contingent nature of state infrastructural power as depending on key domestic firms that often serve as intermediaries between domestic infrastructure and global supply chains or international partners. Utilising empirical case studies based on field research conducted between 2021 and 2023 in Thailand and Taiwan, we analyse the ways in which state infrastructure power is exercised through strategic negotiation between national politics of the state and territorial investment decisions of multinational and major domestic firms within global supply chains. The study highlights how outcomes of state projects to foster connectivity or centrality in networks are shaped by contingent and sometimes ad-hoc coalitions between state agencies and domestic and multinational companies with their own interests and agency. In the case of Taiwan, the centrality of Taiwan Semiconductor Manufacturing Company (TSMC) to global supply chains makes it an important player amidst continued U.S.-China tension. In Thailand, CP Group’s connections to China have afforded it a role as an interlocutor between Thailand and China, allowing it to obtain state infrastructure contracts. Through comparative case studies the paper complicates both ‘globalist’ and methodologically nationalist perspectives on the ‘infrastructural turn’, and introduces the concept of ‘extended state infrastructural power’ to account for this complex, networked exercise of state authority.
</summary>
<dc:date>2024-11-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Uncovering Patterns in Overdose Deaths: An Analysis of Spike Identification in Fatal Drug Overdose Data in Massachusetts, 2017-2023</title>
<link href="https://hdl.handle.net/1721.1/165092" rel="alternate"/>
<author>
<name>Lee, Hannah</name>
</author>
<author>
<name>Otero-Leon, Daniel</name>
</author>
<author>
<name>Dong, Huiru</name>
</author>
<author>
<name>Stringfellow, Erin J</name>
</author>
<author>
<name>Jalali, Mohammad S</name>
</author>
<id>https://hdl.handle.net/1721.1/165092</id>
<updated>2026-03-13T03:07:33Z</updated>
<published>2026-01-01T00:00:00Z</published>
<summary type="text">Uncovering Patterns in Overdose Deaths: An Analysis of Spike Identification in Fatal Drug Overdose Data in Massachusetts, 2017-2023
Lee, Hannah; Otero-Leon, Daniel; Dong, Huiru; Stringfellow, Erin J; Jalali, Mohammad S
Objectives:&#13;
Yearly rolling aggregate trends or rates are commonly used to analyze trends in overdose deaths, but focusing on long-term trends can obscure short-term fluctuations (eg, daily spikes). We analyzed data on spikes in daily fatal overdoses and how various spike detection thresholds influence the identification of spikes.&#13;
Materials and Methods:&#13;
We used a spike detection algorithm to identify spikes among 16 660 drug-related overdose deaths (from any drug) reported in Massachusetts’ vital statistics from 2017 through 2023. We adjusted the parameters of the algorithm to define spikes in 3 distinct scenarios: deaths exceeding 2 adjusted moving SDs above the 7-, 30-, and 90-day adjusted moving average.&#13;
Results:&#13;
Our results confirmed the on-the-ground observation that there are days when many more people die of overdoses than would be expected based on fluctuations due to differences among people alone. We identified spikes on 5.8% to 20.6% of the days across the 3 scenarios, annually, constituting 11.1% to 31.6% of all overdose deaths. The absolute difference in percentage points of days identified as spikes varied from 5.2 to 11.5 between 7- and 30-day lags and from 0 to 4.6 between 30- and 90-day lags across years. When compared with the adjusted moving average across the 3 scenarios, in 2017 an average of 3.9 to 5.5 additional deaths occurred on spike days, while in 2023 the range was 3.7 to 6.0.&#13;
Practice Implications:&#13;
A substantial percentage of deaths occurred annually on spike days, highlighting the need for effectively monitoring short-term overdose trends. Moreover, our study serves as a foundational analysis for future research into exogenous events that may contribute to spikes in overdose deaths, aiming to prevent future deaths.
</summary>
<dc:date>2026-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Experiential learning amid disequilibrium: Attuning to student emotions</title>
<link href="https://hdl.handle.net/1721.1/165091" rel="alternate"/>
<author>
<name>O’Flanagan, Sinead E</name>
</author>
<author>
<name>Y Jester, Michellana</name>
</author>
<id>https://hdl.handle.net/1721.1/165091</id>
<updated>2026-03-13T03:07:24Z</updated>
<published>2025-01-09T00:00:00Z</published>
<summary type="text">Experiential learning amid disequilibrium: Attuning to student emotions
O’Flanagan, Sinead E; Y Jester, Michellana
Educators recognize the significant role emotions play in experiential learning (EL), particularly in how they support students through the inherent emotion work. However, the traditional design of experiential learning theory (ELT) in higher education (HE) often presupposes a stable environment, which overlooks the impact of unpredictable external factors on students’ emotions and learning. Despite its critical importance, emotion work in EL remains underexplored, with emotional dynamics often obscured or dismissed as isolated incidents. This study sheds light on the heightened emotional challenges that arise during periods of sustained disequilibrium, such as the COVID-19-induced restrictions. It provides novel insights into the dynamic interplay of emotions and learning progression within EL frameworks, drawing on perspectives from EL educators, advisors, and students. The research underscores the importance of emotion-focused dialogue, educator-student connection, and assimilating autonomy needs in EL amid disequilibrium. It also identifies often-neglected elements in EL frameworks, such as students “sharing struggles” or “valuing work efforts,” alongside educator strategies like “personal anchoring.” The findings contribute to ELT by proposing adaptive strategies that integrate emotion work into pedagogical frameworks, enhancing reflection and conceptualization practices, and extending ELT’s applicability across diverse educational and work-based management learning settings.
</summary>
<dc:date>2025-01-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, Associate Vice President for Research Administration</title>
<link href="https://hdl.handle.net/1721.1/165090" rel="alternate"/>
<author>
<name>White, Anne</name>
</author>
<id>https://hdl.handle.net/1721.1/165090</id>
<updated>2026-03-12T07:26:11Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, Associate Vice President for Research Administration
White, Anne
This report contains the following sections: Overview, Research Administration Services, OSATT Core, Technology Licensing Office, Corporate Relations, Research Systems &amp; Support, and Cost Analysis.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Insulin Delivery Pumps for Human Spaceflight: Steps Toward an Accessible Space Future</title>
<link href="https://hdl.handle.net/1721.1/165089" rel="alternate"/>
<author>
<name>Horn, Kyle J</name>
</author>
<author>
<name>Hoffman, Jeffrey A</name>
</author>
<id>https://hdl.handle.net/1721.1/165089</id>
<updated>2026-03-12T07:25:04Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Insulin Delivery Pumps for Human Spaceflight: Steps Toward an Accessible Space Future
Horn, Kyle J; Hoffman, Jeffrey A
Commercially available insulin pumps for treatment of diabetes mellitus are currently not qualified to operate in the space environment. This work rigorously tested the fluid delivery performance of a Tandem t:slim X2 insulin pump in both micro- and hypergravity during a parabolic microgravity research flight. The parabolic research flight environment serves as an analogue to the types of transient gravitational loadings experienced during human-led missions, which provides a foundation to expand testing to suborbital and orbital flights in addition to other extreme environmental tests for wilderness dependency. The results of the flight data showed no significant difference between fluid delivery performance at 0, 1, and 2g acceleration regimes, nor at the transitions between gravity environments. Recommendations are made for further experimentation and qualification tests before use in future spaceflight missions.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>On the nonlinear Eshelby inclusion problem and its isomorphic growth limit</title>
<link href="https://hdl.handle.net/1721.1/165088" rel="alternate"/>
<author>
<name>Bonavia, Joseph E</name>
</author>
<author>
<name>Chockalingam, S</name>
</author>
<author>
<name>Cohen, Tal</name>
</author>
<id>https://hdl.handle.net/1721.1/165088</id>
<updated>2026-03-12T07:24:57Z</updated>
<published>2026-01-01T00:00:00Z</published>
<summary type="text">On the nonlinear Eshelby inclusion problem and its isomorphic growth limit
Bonavia, Joseph E; Chockalingam, S; Cohen, Tal
In the late 1950s, Eshelby’s linear solutions for the deformation field inside an ellipsoidal inclusion and, subsequently, the infinite matrix in which it is embedded were published. The solutions’ ability to capture the behavior of an orthotropically symmetric shaped inclusion made it invaluable in efforts to understand the behavior of defects within, and the micromechanics of, metals and other stiff materials throughout the rest of the 20th century. Over half a century later, we wish to understand the analogous effects of microstructure on the behavior of soft materials, both organic and synthetic, but in order to do so, we must venture beyond the linear limit, far into the nonlinear regime. However, no solutions to these analogous problems currently exist for non-spherical inclusions. In this work, we present an accurate semi-inverse solution for the elastic field in an isotropically growing spheroidal inclusion embedded in an infinite matrix, both made of the same incompressible neo-Hookean material. We also investigate the behavior of such an inclusion as it grows infinitely large, demonstrating the existence of a non-spherical asymptotic shape and an associated asymptotic pressure. We call this the isomorphic limit, and the associated pressure the isomorphic pressure.
</summary>
<dc:date>2026-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evaluating Risk for Astronaut Involvement in In-Space Manufacturing: Analog Field Testing and Future Planetary Surface Procedures</title>
<link href="https://hdl.handle.net/1721.1/165087" rel="alternate"/>
<author>
<name>MacRobbie, Madelyn</name>
</author>
<author>
<name>Patel, Palak B.</name>
</author>
<id>https://hdl.handle.net/1721.1/165087</id>
<updated>2026-03-12T07:24:54Z</updated>
<published>2025-03-29T00:00:00Z</published>
<summary type="text">Evaluating Risk for Astronaut Involvement in In-Space Manufacturing: Analog Field Testing and Future Planetary Surface Procedures
MacRobbie, Madelyn; Patel, Palak B.
Introduction&#13;
A key objective of the NASA Artemis program is to establish a sustained human presence on the Moon, along with its international and commercial partners. NASA aims to establish a lunar economy, increasing the need for infrastructure to support human habitation and facilitate growth. In-space manufacturing (ISM) coupled with in situ resource utilization (ISRU) can reduce launch mass and reduce the dependency on Earth resupply for long-term habitation, enabling rapid expansion. However, the space environment introduces unique challenges compared to Earth, such as the absence of an atmosphere, reduced gravity levels, and high consequences of human-machine interactions given the barrier to evacuating an astronaut injured in a manufacturing accident on the Moon, necessitating new safety standards for ISM processes.&#13;
Methods&#13;
This study proposes the application of a modified analytical hierarchy process (AHP) to identify high-risk aspects of crew procedures in molten regolith electrolysis (MRE) for both Earth-based analog testing and lunar production.&#13;
Results&#13;
The modified AHP assists in pinpointing areas needing hazard mitigation to protect crew members, enabling the improvement of safety standards for MRE in both environments.&#13;
Conclusion&#13;
Findings will inform the development of robust safety protocols for ISM, crucial for the success of NASA's Artemis missions and the broader goal of sustained human presence on the Moon and Mars.
</summary>
<dc:date>2025-03-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Origins of Face Responses in the Human Cortex: fNIRS and fMRI Evidence From Infants</title>
<link href="https://hdl.handle.net/1721.1/165086" rel="alternate"/>
<author>
<name>Saxe, Rebecca</name>
</author>
<author>
<name>Kosakowski, Heather L</name>
</author>
<id>https://hdl.handle.net/1721.1/165086</id>
<updated>2026-03-12T07:25:03Z</updated>
<published>2025-10-01T00:00:00Z</published>
<summary type="text">Origins of Face Responses in the Human Cortex: fNIRS and fMRI Evidence From Infants
Saxe, Rebecca; Kosakowski, Heather L
In adults, cortical regions in the fusiform face area (FFA), superior temporal sulcus (STS), and medial prefrontal cortex (MPFC) respond selectively to faces but underlie distinct perceptual and social processes. When do each of these regions, and their distinctive functions, develop? We reviewed recent studies of awake human infants’ cortical responses to faces using functional near-infrared spectroscopy (fNIRS) and functional MRI (fMRI). The results converged and do not support a slow, sequential posterior-to-anterior development of face-selective responses. Instead, cortical face-selective responses arise very early and simultaneously in infancy and may reflect distinctively social processes from the start.
</summary>
<dc:date>2025-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Effect of Basketball Analytics Investment on National Basketball Association (NBA) Team Performance</title>
<link href="https://hdl.handle.net/1721.1/165085" rel="alternate"/>
<author>
<name>Wang, Henry</name>
</author>
<author>
<name>Sarker, Arnab</name>
</author>
<author>
<name>Hosoi, Anette</name>
</author>
<id>https://hdl.handle.net/1721.1/165085</id>
<updated>2026-03-12T07:25:02Z</updated>
<published>2025-08-01T00:00:00Z</published>
<summary type="text">The Effect of Basketball Analytics Investment on National Basketball Association (NBA) Team Performance
Wang, Henry; Sarker, Arnab; Hosoi, Anette
In the National Basketball Association (NBA), basketball data and analytics is an area of significant financial investment for all 30 franchises, despite there being little quantitative evidence demonstrating analytics adoption actually improves team-level performance. This study seeks to measure the return on investment of analytics on NBA team success in a time of great demand for analytical front office personnel. Using a two-way fixed effects modeling approach, we identify the causal effect of analytics department headcounts on regular season wins using 12 years of season-level data for each team. We find a positive and statistically significant effect, suggesting clubs that invest more in analytics tend to outperform competitors when controlling for roster characteristics, injuries, difficulty of schedule, and team-specific and time-specific effects. This research contributes to the body of literature affirming the value of data analytics for organizational performance and supports current investments in analytics being made by NBA teams.
</summary>
<dc:date>2025-08-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Workshop on Noninvasive Glucose Monitoring 2024</title>
<link href="https://hdl.handle.net/1721.1/165084" rel="alternate"/>
<author>
<name>Kang, Jeon Woong</name>
</author>
<author>
<name>Arnold, Mark A</name>
</author>
<author>
<name>Steenkamp, Devin</name>
</author>
<author>
<name>Tapsak, Mark A</name>
</author>
<author>
<name>Mäntele, Werner</name>
</author>
<author>
<name>Khang, Yoonho</name>
</author>
<author>
<name>Jue, Miyeon</name>
</author>
<author>
<name>So, Peter TC</name>
</author>
<id>https://hdl.handle.net/1721.1/165084</id>
<updated>2026-03-12T07:25:00Z</updated>
<published>2025-07-01T00:00:00Z</published>
<summary type="text">Workshop on Noninvasive Glucose Monitoring 2024
Kang, Jeon Woong; Arnold, Mark A; Steenkamp, Devin; Tapsak, Mark A; Mäntele, Werner; Khang, Yoonho; Jue, Miyeon; So, Peter TC
This first workshop on noninvasive glucose monitoring (NIGM) was held at the Massachusetts Institute of Technology (MIT) on October 30, 2024. Six invited speakers, representing industry, academia, and clinics, gave presentations that covered (1) an overview of the NIGM technologies, (2) the state of the art in NIGM technologies, such as near-infrared (NIR), mid-infrared (IR), photoacoustic, and Raman spectroscopies, (3) minimally invasive implantable continuous glucose monitoring (CGM) sensors, and (4) a clinician’s perspective on the impact of the current CGM devices for patient care.
</summary>
<dc:date>2025-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The community test tube of American civilization: Burt and Ethel Aginsky’s Social Science Field Laboratory, 1939–47</title>
<link href="https://hdl.handle.net/1721.1/165083" rel="alternate"/>
<author>
<name>Kapsalakis, Lauren</name>
</author>
<id>https://hdl.handle.net/1721.1/165083</id>
<updated>2026-03-12T07:25:01Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">The community test tube of American civilization: Burt and Ethel Aginsky’s Social Science Field Laboratory, 1939–47
Kapsalakis, Lauren
The Social Science Field Laboratory (SSFL, 1939–47), a field school in the Ukiah Valley that trained students in social scientific and anthropological methodology, sheds light on a period in anthropology when methods were shifting from objective empiricism to meaningful participation. As analytic tools for framing the study of society failed to keep pace with social change, sociopolitical trends inside and outside anthropology situated a valley in northern California as the opportune place to gather a sample of ‘American history in vitro’. Founded by Columbia-trained anthropologists Burt and Ethel Aginsky, the SSFL responded to trends inside and outside anthropology. As the Great Depression directed anthropologists’ attention to the study of practical, modern problems in complex American communities—such as race relations, immigration, modernization, and urbanization—funding agencies strengthened the relations between sociology and anthropology and encouraged the development of interdisciplinary approaches. The Aginskys conceived of the Ukiah Valley as a ‘community test-tube of American civilization’, where scientists from all disciplines ‘can come for a convenient sample of the United States, past and present’. In teaching students how to collect data in the field, the Aginskys pierced the widely held notion that ethnographic technique cannot be taught but must be experienced by the lone individual in the field.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Exploring How Organizational Actors Experience Evaluation and Its Influence: A Q-Methodological Study</title>
<link href="https://hdl.handle.net/1721.1/165082" rel="alternate"/>
<author>
<name>Kelly, Catherine</name>
</author>
<id>https://hdl.handle.net/1721.1/165082</id>
<updated>2026-03-12T07:24:59Z</updated>
<published>2025-04-23T00:00:00Z</published>
<summary type="text">Exploring How Organizational Actors Experience Evaluation and Its Influence: A Q-Methodological Study
Kelly, Catherine
This article contributes to research on evaluation by examining how organizational actors respond to and use evaluation imposed on them within an evaluation system. Drawing on Henry and Mark's theory of evaluation influence, this study uses Q-methodology to explore how staff within English higher education providers experience evaluation and its influence on their widening participation practice and strategy decision-making. The experiences of organizational actors are examined and classified into four types: strategic practitioners, pragmatic practitioners, staff with indirect involvement in widening participation, and evaluation enthusiasts. Through analyzing these experiences, the findings illustrate the diverse ways organizational actors are influenced by evaluation within evaluation systems. To deepen our understanding of evaluation influence in the contexts of evaluation systems, this article recommends explicitly embedding organizational theories into future theories of evaluation influence and provides suggestions for future research on the topic.
</summary>
<dc:date>2025-04-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mapping the Caregiver Experience: Predicting Dimensions of Caregiver Strain Through Task-Based Profiles</title>
<link href="https://hdl.handle.net/1721.1/165081" rel="alternate"/>
<author>
<name>Brady, Samantha</name>
</author>
<author>
<name>Ashebir, Sophia</name>
</author>
<author>
<name>D’Ambrosio, Lisa</name>
</author>
<author>
<name>Balmuth, Alexa</name>
</author>
<author>
<name>Felts, Adam</name>
</author>
<author>
<name>Lee, Chaiwoo</name>
</author>
<id>https://hdl.handle.net/1721.1/165081</id>
<updated>2026-03-12T07:24:55Z</updated>
<published>2026-01-01T00:00:00Z</published>
<summary type="text">Mapping the Caregiver Experience: Predicting Dimensions of Caregiver Strain Through Task-Based Profiles
Brady, Samantha; Ashebir, Sophia; D’Ambrosio, Lisa; Balmuth, Alexa; Felts, Adam; Lee, Chaiwoo
Objective: Family caregiving is a prevalent, diverse, and often challenging experience. We develop caregiving activity profiles to better understand how sets of care-tasks contribute to various aspects of strain.&#13;
Methods: Using diary data from a survey of 213 family caregivers in the U.S., we perform latent class analysis to group commonly occurring care-related tasks into activity profiles. We then use these classifications to predict physical, financial, and emotional strain.&#13;
Main Findings: We identified 4 unique activity profiles based on a set of 36 daily caregiving activities performed. Activity profiles varied significantly across the three analyzed strain dimensions.&#13;
Conclusion: Activity profiles present opportunities to better understand how caregiving tasks are related to specific types kinds of caregiving strain.
</summary>
<dc:date>2026-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Your home is not a school: The limits of homeschooling as a political practice</title>
<link href="https://hdl.handle.net/1721.1/165080" rel="alternate"/>
<author>
<name>Pavel, Sonia Maria</name>
</author>
<author>
<name>Cynamon, Jeremy Kingston</name>
</author>
<id>https://hdl.handle.net/1721.1/165080</id>
<updated>2026-03-12T07:24:53Z</updated>
<published>2025-04-18T00:00:00Z</published>
<summary type="text">Your home is not a school: The limits of homeschooling as a political practice
Pavel, Sonia Maria; Cynamon, Jeremy Kingston
Homeschooling is on the rise. It appeals to very different perspectives and ideologies that tend not to have common ground, from classical conservative to radical progressive. But the justifications for the practice are weak. In this paper, we build a case against the “home school” as a political practice using the existing commitments of liberal, conservative, and democratic theories of education. Whether education should aim at the cultivation of children's autonomy, their formation as members of cultural communities, or their training as democratic citizens, there are reasons to doubt that the practice of homeschooling can fulfill our educational goals. As such, we argue that liberals, conservatives, and democrats each have their own motivations to oppose homeschooling as an institutional alternative to traditional schools. Through our critiques, we also advance a metatheoretical argument in favor of centering the aims of education in our philosophical and political debates.
</summary>
<dc:date>2025-04-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Qualitative Assessment of Terrestrial Care Settings to Inform Self-sufficient Spaceflight Medical Care</title>
<link href="https://hdl.handle.net/1721.1/165079" rel="alternate"/>
<author>
<name>Porter, Allison</name>
</author>
<author>
<name>Arquilla, Katya</name>
</author>
<author>
<name>Stankovic, Aleksandra</name>
</author>
<id>https://hdl.handle.net/1721.1/165079</id>
<updated>2026-03-12T07:24:52Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Qualitative Assessment of Terrestrial Care Settings to Inform Self-sufficient Spaceflight Medical Care
Porter, Allison; Arquilla, Katya; Stankovic, Aleksandra
Introduction&#13;
Long communication latencies in exploration spaceflight will necessitate in situ resolution to medical problems. Integrating automation into the care paradigm can address challenges posed by resource gaps inherent to spaceflight operations. However, it is not clear what aspects of exploration care are most well suited for automation integration.&#13;
Methods&#13;
To probe the potential role of automation in spaceflight medicine, we began by decomposing the human-automation system to first characterize the work domain(s) of the human tasks. Using the lens of point-of-care ultrasound, we leveraged existing analogous Earth medical domains to conduct in situ observations in a hospital emergency department to understand how clinicians process contextual information to provide urgent care using ultrasound and semistructured interviews with specialists to identify key procedural information components for automation.&#13;
Results&#13;
This investigation allowed us to characterize the dynamic system surrounding a task that does not exist in its intended—currently inaccessible—use case (ie, point-of-care ultrasound on Mars) to guide future human-automation systems development.&#13;
Conclusion&#13;
We conclude that specific aspects of the care environment that influence the result of a task or process (“mediating factors”) from candidate work domains call for distinct, targeted guidance for automation support and are valuable in providing system developers with tunable automation level and implementation guidelines within and/or between those work domains. Such evidence-based design practice is directly translatable to automation assistance for medical providers in resource-limited environments as well as to any situation where a person's sensory processing, perception, decision making, or response selection could be aided by automation to accomplish a task.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Solutions and Challenges for Addressing Misinformation</title>
<link href="https://hdl.handle.net/1721.1/165078" rel="alternate"/>
<author>
<name>Martel, Cameron</name>
</author>
<author>
<name>Rand, David G</name>
</author>
<id>https://hdl.handle.net/1721.1/165078</id>
<updated>2026-03-12T07:24:47Z</updated>
<published>2025-06-10T00:00:00Z</published>
<summary type="text">Solutions and Challenges for Addressing Misinformation
Martel, Cameron; Rand, David G
Research on mitigating the effects of misinformation has contributed to the development of multiple feasible interventions designed to reduce belief in, and sharing of, falsehoods. The authors review these interventions and discuss challenges and open questions for future research. First, they provide an overview of content-neutral and content-based interventions. Next, they discuss two practical challenges to deploying and assessing these interventions in the field: scalability and pushback against content moderation efforts due to perceived political bias. Finally, they highlight several open theoretical questions and common pitfalls of research on misinformation. In particular, they argue for critical evaluation of how interventions may be effective across different types of misinformative content, different key subpopulations, and different media and environmental contexts.
</summary>
<dc:date>2025-06-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Atomic Transactions</title>
<link href="https://hdl.handle.net/1721.1/165077" rel="alternate"/>
<author>
<name>Lynch, Nancy</name>
</author>
<author>
<name>Merritt, Michael</name>
</author>
<author>
<name>Weihl, William</name>
</author>
<author>
<name>Fekete, Alan</name>
</author>
<id>https://hdl.handle.net/1721.1/165077</id>
<updated>2026-04-16T03:10:40Z</updated>
<published>1994-01-01T00:00:00Z</published>
<summary type="text">Atomic Transactions
Lynch, Nancy; Merritt, Michael; Weihl, William; Fekete, Alan
</summary>
<dc:date>1994-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A design of a low-pressure steam turbine</title>
<link href="https://hdl.handle.net/1721.1/165076" rel="alternate"/>
<author>
<name>Jones, Bradley.</name>
</author>
<id>https://hdl.handle.net/1721.1/165076</id>
<updated>2026-03-11T03:05:17Z</updated>
<published>1910-01-01T00:00:00Z</published>
<summary type="text">A design of a low-pressure steam turbine
Jones, Bradley.
Thesis: B.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1910
</summary>
<dc:date>1910-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Computational study of static replication for barrier options</title>
<link href="https://hdl.handle.net/1721.1/165075" rel="alternate"/>
<author>
<name>Sun, Hai Po.</name>
</author>
<id>https://hdl.handle.net/1721.1/165075</id>
<updated>2026-03-11T03:04:39Z</updated>
<published>1997-01-01T00:00:00Z</published>
<summary type="text">Computational study of static replication for barrier options
Sun, Hai Po.
Thesis: M. Eng., Massachusetts Institute of Technology, Department of Electrical Engineering and Computer Science, 1997; Includes bibliographical references (leaves 75-76).
</summary>
<dc:date>1997-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modeling, control and experimentation of a two dimensional linear motor</title>
<link href="https://hdl.handle.net/1721.1/165074" rel="alternate"/>
<author>
<name>Castañeda Vega, José Israel.</name>
</author>
<id>https://hdl.handle.net/1721.1/165074</id>
<updated>2026-03-11T03:04:33Z</updated>
<published>1997-01-01T00:00:00Z</published>
<summary type="text">Modeling, control and experimentation of a two dimensional linear motor
Castañeda Vega, José Israel.
Thesis: M.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1997; Includes bibliographical references (leaf 118).
</summary>
<dc:date>1997-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A study of anode dimensions in mercury-vapour thermionic rectifiers</title>
<link href="https://hdl.handle.net/1721.1/165073" rel="alternate"/>
<author>
<name>Fussell, Lewis.</name>
</author>
<id>https://hdl.handle.net/1721.1/165073</id>
<updated>2026-03-11T03:04:42Z</updated>
<published>1932-01-01T00:00:00Z</published>
<summary type="text">A study of anode dimensions in mercury-vapour thermionic rectifiers
Fussell, Lewis.
Thesis: M.S., Massachusetts Institute of Technology, Department of Electrical Engineering, 1932; Includes bibliographical references (leaf 50).
</summary>
<dc:date>1932-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cloud-chamber study of cosmic ray showers in lead plates</title>
<link href="https://hdl.handle.net/1721.1/165072" rel="alternate"/>
<author>
<name>Fussell, Lewis.</name>
</author>
<id>https://hdl.handle.net/1721.1/165072</id>
<updated>2026-03-11T03:02:21Z</updated>
<published>1938-01-01T00:00:00Z</published>
<summary type="text">Cloud-chamber study of cosmic ray showers in lead plates
Fussell, Lewis.
Thesis: Sc. D., Massachusetts Institute of Technology, Department of Electrical Engineering, 1938; Includes bibliographical references (leaves [113]-[118]).
</summary>
<dc:date>1938-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of a high-speed light source suitable for photoelastic studies</title>
<link href="https://hdl.handle.net/1721.1/165071" rel="alternate"/>
<author>
<name>Wyle, Frank S.</name>
</author>
<id>https://hdl.handle.net/1721.1/165071</id>
<updated>2026-03-11T03:05:14Z</updated>
<published>1941-01-01T00:00:00Z</published>
<summary type="text">Development of a high-speed light source suitable for photoelastic studies
Wyle, Frank S.
Thesis: B.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1941; Includes bibliographical references (leaf 25).
</summary>
<dc:date>1941-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Boiling and spreading rates of instantaneous liquid methane spills on water</title>
<link href="https://hdl.handle.net/1721.1/165070" rel="alternate"/>
<author>
<name>Chatlos, David Joseph.</name>
</author>
<id>https://hdl.handle.net/1721.1/165070</id>
<updated>2026-03-11T03:04:37Z</updated>
<published>1982-01-01T00:00:00Z</published>
<summary type="text">Boiling and spreading rates of instantaneous liquid methane spills on water
Chatlos, David Joseph.
Thesis: M.S., Massachusetts Institute of Technology, Department of Chemical Engineering, 1982; Supervised by Robert C. Reid.; Includes bibliographical references (leaves 86-88).
</summary>
<dc:date>1982-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Manipulation and measurement of charge transfer kinetics at chemically modified electrodes</title>
<link href="https://hdl.handle.net/1721.1/165069" rel="alternate"/>
<author>
<name>Lewis, Nathan S.
            (Nathan Saul)</name>
</author>
<id>https://hdl.handle.net/1721.1/165069</id>
<updated>2026-03-11T03:02:10Z</updated>
<published>1981-01-01T00:00:00Z</published>
<summary type="text">Manipulation and measurement of charge transfer kinetics at chemically modified electrodes
Lewis, Nathan S.
            (Nathan Saul)
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Chemistry, 1981; Includes bibliographical references.
</summary>
<dc:date>1981-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Application of Fourier transform spectroscopy to the absolute determination of the chemical shift of protons.</title>
<link href="https://hdl.handle.net/1721.1/165068" rel="alternate"/>
<author>
<name>Wright, Francine Elaine.</name>
</author>
<id>https://hdl.handle.net/1721.1/165068</id>
<updated>2026-03-11T03:04:45Z</updated>
<published>1975-01-01T00:00:00Z</published>
<summary type="text">Application of Fourier transform spectroscopy to the absolute determination of the chemical shift of protons.
Wright, Francine Elaine.
Thesis: M.S., Massachusetts Institute of Technology, Department of Physics, 1975; Vita.; Bibliography: leaves 65-66.
</summary>
<dc:date>1975-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Double valves</title>
<link href="https://hdl.handle.net/1721.1/165067" rel="alternate"/>
<author>
<name>Faunce, Linus.</name>
</author>
<id>https://hdl.handle.net/1721.1/165067</id>
<updated>2026-03-11T03:05:04Z</updated>
<published>1877-01-01T00:00:00Z</published>
<summary type="text">Double valves
Faunce, Linus.
Thesis: B.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1877
</summary>
<dc:date>1877-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Recirculation through western boundary currents varies nonlinearly with the ocean basin's aspect ratio</title>
<link href="https://hdl.handle.net/1721.1/165066" rel="alternate"/>
<author>
<name>Gianchandani, Kaushal</name>
</author>
<id>https://hdl.handle.net/1721.1/165066</id>
<updated>2026-04-24T03:15:52Z</updated>
<published>2024-09-17T00:00:00Z</published>
<summary type="text">Recirculation through western boundary currents varies nonlinearly with the ocean basin's aspect ratio
Gianchandani, Kaushal
Recirculation gyres adjacent to western boundary currents (WBCs) in the ocean enhance the poleward transport of these currents. While it is well-established that the WBC in a barotropic ocean strengthens with increase in basin's aspect ratio (the meridional-to-zonal extent ratio), how intensity of the recirculation through the western boundary layer varies with this parameter remains unexplored. I address this using the non-dimensional form of the nonlinear, wind-driven Stommel–Munk model of westward intensification that comprises three parameters—the aspect ratio (δ), the damping coefficient (ϵ), and the β-Rossby number (Rβ). Here, ϵ is set by the ratio of Rayleigh friction coefficient (or eddy viscosity) to the meridional gradient of the Coriolis frequency and the basin's zonal dimension, while Rβ is proportional to wind stress amplitude and quantifies the strength of nonlinearity. In the weak-to-moderate nonlinearity limit (Rβ&amp;amp;lt;∼ϵ), perturbation analysis reveals that recirculation varies concavely with aspect ratio, suggesting existence of an optimal aspect ratio (δopt) for which the recirculation is maximum and for typical values of ϵ (10−3−10−2), δopt follows the power-law relation δopt=4.3ϵ. Numerical simulations further validate the existence of δopt. For large ϵ (&amp;amp;gt;5×10−3), the power-law predicts δopt for the numerical solutions rather accurately, but does not hold for smaller ϵ (2×10−3) due to increased importance of nonlinear terms. Nevertheless, the nonlinear variation in recirculation through the western boundary layer with aspect ratio is observed for all ϵ values and may contribute to the heterogeneous increase in the WBC's transport across different ocean basins in a warming climate.
</summary>
<dc:date>2024-09-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Streamlining Physics Problem Generation to Support Physics Teachers in Using Generative Artificial Intelligence</title>
<link href="https://hdl.handle.net/1721.1/165065" rel="alternate"/>
<author>
<name>El-Adawy, Shams</name>
</author>
<author>
<name>Liao, Isaac</name>
</author>
<author>
<name>Lad, Vedang</name>
</author>
<author>
<name>Abdelhafez, Mohamed</name>
</author>
<author>
<name>Dourmashkin, Peter</name>
</author>
<id>https://hdl.handle.net/1721.1/165065</id>
<updated>2026-04-24T03:15:23Z</updated>
<published>2024-10-01T00:00:00Z</published>
<summary type="text">Streamlining Physics Problem Generation to Support Physics Teachers in Using Generative Artificial Intelligence
El-Adawy, Shams; Liao, Isaac; Lad, Vedang; Abdelhafez, Mohamed; Dourmashkin, Peter
The rapid advancement of large language models (LLMs) presents a unique opportunity for educators to find ways to include artificial intelligence (AI) in physics course design. By critically engaging with LLMs to help with the task of generating problems, physics teachers can not only model a potentially effective way to use LLMs for other teachers, but also showcase to students ways to productively engage with LLMs. This article presents a workflow with two different starting points to generate physics problems using ChatGPT 3.5. The first initialization involves interacting with ChatGPT in a conversational manner, guiding iterative problem creation by breaking tasks into smaller tasks. The second initialization harnesses ChatGPT’s generative abilities, aligning problem generation with established problem styles by instructing the model to emulate contexts from question banks. We discuss the implications of this workflow for other physics instructors exploring productive ways to incorporate the use of AI in their own course design.
</summary>
<dc:date>2024-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ion optical design of the magnetic proton recoil neutron spectrometer for the SPARC tokamak</title>
<link href="https://hdl.handle.net/1721.1/165064" rel="alternate"/>
<author>
<name>Mackie, S</name>
</author>
<author>
<name>Wink, CW</name>
</author>
<author>
<name>Dalla Rosa, M</name>
</author>
<author>
<name>Berg, GPA</name>
</author>
<author>
<name>Ball, JL</name>
</author>
<author>
<name>Wang, X</name>
</author>
<author>
<name>Carmichael, J</name>
</author>
<author>
<name>Tinguely, RA</name>
</author>
<author>
<name>Rigamonti, D</name>
</author>
<author>
<name>Tardocchi, M</name>
</author>
<author>
<name>Raj, P</name>
</author>
<author>
<name>Frenje, J</name>
</author>
<author>
<name>Rice, J</name>
</author>
<id>https://hdl.handle.net/1721.1/165064</id>
<updated>2026-05-08T03:14:00Z</updated>
<published>2024-10-01T00:00:00Z</published>
<summary type="text">Ion optical design of the magnetic proton recoil neutron spectrometer for the SPARC tokamak
Mackie, S; Wink, CW; Dalla Rosa, M; Berg, GPA; Ball, JL; Wang, X; Carmichael, J; Tinguely, RA; Rigamonti, D; Tardocchi, M; Raj, P; Frenje, J; Rice, J
A magnetic proton recoil (MPR) neutron spectrometer is being designed for SPARC, a high magnetic field (BT = 12 T), compact (R0 = 1.85 m, a = 0.57 m) tokamak currently under construction in Devens, MA, USA. MPR neutron spectrometers are versatile tools for making high fidelity ab initio calibrated measurements of fusion neutron flux spectra and have been used to infer fusion power, ion temperature, fuel ion ratio, and suprathermal fuel populations at several high performance fusion experiments. The performance of an MPR neutron spectrometer is in large part determined by the design of the magnetic field, which disperses and focuses recoil protons. This article details the ion optical design of a high-resolution MPR neutron spectrometer, including the amelioration of image aberrations due to nonlinear effects. An optimized design is presented that achieves ion optical energy resolution δE/E &lt; 1% and focal plane properties that enable straightforward integration with the hodoscope detector array.
</summary>
<dc:date>2024-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Performance predictions of the SPARC x-ray crystal spectrometers for ion temperature and toroidal rotation measurements</title>
<link href="https://hdl.handle.net/1721.1/165063" rel="alternate"/>
<author>
<name>Perks, C</name>
</author>
<author>
<name>Vezinet, D</name>
</author>
<author>
<name>Rice, JE</name>
</author>
<author>
<name>Reinke, ML</name>
</author>
<id>https://hdl.handle.net/1721.1/165063</id>
<updated>2026-05-08T03:12:47Z</updated>
<published>2024-08-27T00:00:00Z</published>
<summary type="text">Performance predictions of the SPARC x-ray crystal spectrometers for ion temperature and toroidal rotation measurements
Perks, C; Vezinet, D; Rice, JE; Reinke, ML
SPARC will be outfitted with three systems of x-ray crystal spectrometer arrays. Two of these are designed using cylindrically bent crystals to achieve high spectral-resolution for ion temperature and toroidal velocity measurements via imaging He-like Kr and Ne-like Xe. The last acts as a spectral survey system to monitor Ne-like W and nearby H- and He-like emission from Cr, Fe, Co, Ni, and Cu. Line radiation intensities are calculated using the Flexible Atomic Code for atomic data and ColRadPy for collisional-radiative modeling, then convoluted with a Voigt line shape. Free–free, free-bound, and two-photon continuum radiation is also included. The ToFu code is used to perform volume-of-sight integration to produce synthetic detector images. In addition, presented is cross-validation performed using the XICSRT Monte Carlo ray-tracing code. Ion temperature and toroidal velocity profiles are reconstructed using ToFu via tomographic inversion.
</summary>
<dc:date>2024-08-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Edge scanning reflectometry for density profile measurement on the SPARC tokamak</title>
<link href="https://hdl.handle.net/1721.1/165062" rel="alternate"/>
<author>
<name>Lin, Y</name>
</author>
<author>
<name>Nikolaeva, V</name>
</author>
<author>
<name>Hachmeister, D</name>
</author>
<author>
<name>Kowalski, E</name>
</author>
<author>
<name>Reinke, ML</name>
</author>
<id>https://hdl.handle.net/1721.1/165062</id>
<updated>2026-05-08T03:12:35Z</updated>
<published>2024-08-21T00:00:00Z</published>
<summary type="text">Edge scanning reflectometry for density profile measurement on the SPARC tokamak
Lin, Y; Nikolaeva, V; Hachmeister, D; Kowalski, E; Reinke, ML
Edge scanning reflectometry (ESRL) on the SPARC tokamak aims to measure the electron density profile from the far scrape-off layer to the top of the typical H-mode pedestal and provide real-time data for plasma control. ESRL uses a standard frequency-modulated continuous wave technique from 18 to 90 GHz. By implementing both the O-mode and left-hand-cutoff X-mode, it covers densities from ∼4 × 1018 to ∼4 × 1020 m−3 at B0 ∼12 T. A voltage-controlled oscillator acts as the frequency sweep source. Phase-locked dielectric resonator oscillators and bandpass filters generate base signals ∼9–15 GHz. The signals are then frequency multiplied and amplified to reach the K (18–26 GHz), Ka (26–40 GHz), U (40–60 GHz), and E (60–90 GHz) bands. Multi-band signals are combined via the quasi-optical technique. ESRL plans to use oversized waveguides (∼20 m one-way) and a bi-static arrangement to minimize signal losses and distortions while allowing system flexibility. A COMSOL Multiphysics RF model in 2D has been set up to simulate the reflectometry process and help decide the layout of the horn antennas. Engineering analyses of the key parts of the system have been carried out in support of its preliminary design.
</summary>
<dc:date>2024-08-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Neutronics simulations for the design of neutron flux monitors in SPARC</title>
<link href="https://hdl.handle.net/1721.1/165061" rel="alternate"/>
<author>
<name>Wang, X</name>
</author>
<author>
<name>Gocht, R</name>
</author>
<author>
<name>Ball, J</name>
</author>
<author>
<name>Mackie, S</name>
</author>
<author>
<name>Panontin, E</name>
</author>
<author>
<name>Tinguely, RA</name>
</author>
<author>
<name>Raj, P</name>
</author>
<author>
<name>Holmes, I</name>
</author>
<author>
<name>Saltos, AA</name>
</author>
<author>
<name>Johnson, A</name>
</author>
<author>
<name>Grieve, A</name>
</author>
<id>https://hdl.handle.net/1721.1/165061</id>
<updated>2026-04-24T03:15:03Z</updated>
<published>2024-08-30T00:00:00Z</published>
<summary type="text">Neutronics simulations for the design of neutron flux monitors in SPARC
Wang, X; Gocht, R; Ball, J; Mackie, S; Panontin, E; Tinguely, RA; Raj, P; Holmes, I; Saltos, AA; Johnson, A; Grieve, A
This paper presents the development and application of high-fidelity neutronic models of the SPARC tokamak for the design of neutron flux monitors (NFM) for application during plasma operations. NFMs measure the neutron flux in the tokamak hall, which is related to fusion power via calibration. We have explored Boron-10 gamma-compensated ionization chambers (ICs) and parallel-plate Uranium-238 fission chambers (FCs). We plan for all NFMs to be located by the wall in the tokamak hall and directly exposed to neutrons streaming through a shielded opening in a midplane port. Our simulations primarily use a constructive solid geometry-based OpenMC model based on the true SPARC geometry. The OpenMC model is benchmarked against a detailed CAD-based MCNP6 model. The B10 ICs are equipped with high-density polyethylene (HDPE) sleeves, borated HDPE housings, and borated aluminum covers to shield out scattered neutrons, optimize detector response levels, and make calibration robust against changes in the tokamak hall. The B10 neutron absorption branching ratio may cause the detectors’ responses to be non-linear to neutron flux &gt;200 keV. However, our simulations unveil that, in the SPARC environment and with the proposed housings and sleeves, &gt;99% of the detector responses are induced by &lt;100 keV neutrons. U238’s insensitivity to slow neutrons makes this FC a promising candidate for direct fusion neutron measurements. Along with a borated HDPE sleeve, about 60% of the FCs’ responses are induced by direct neutrons.
</summary>
<dc:date>2024-08-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Image plate multi-scan response to fusion protons in the range of 1–14 MeV</title>
<link href="https://hdl.handle.net/1721.1/165060" rel="alternate"/>
<author>
<name>Vanderloo, N</name>
</author>
<author>
<name>Cufari, M</name>
</author>
<author>
<name>Russell, L</name>
</author>
<author>
<name>Johnson, TM</name>
</author>
<author>
<name>Vargas, J</name>
</author>
<author>
<name>Foo, BC</name>
</author>
<author>
<name>Buschmann, BI</name>
</author>
<author>
<name>Dannhoff, SG</name>
</author>
<author>
<name>DeVault, A</name>
</author>
<author>
<name>Evans, TE</name>
</author>
<author>
<name>Kunimune, JH</name>
</author>
<author>
<name>Lawrence, Y</name>
</author>
<author>
<name>Pearcy, JA</name>
</author>
<author>
<name>Reichelt, BL</name>
</author>
<author>
<name>Wink, CW</name>
</author>
<author>
<name>Gatu Johnson, M</name>
</author>
<author>
<name>Petrasso, RD</name>
</author>
<author>
<name>Frenje, JA</name>
</author>
<author>
<name>Li, CK</name>
</author>
<id>https://hdl.handle.net/1721.1/165060</id>
<updated>2026-04-24T03:15:51Z</updated>
<published>2024-09-24T00:00:00Z</published>
<summary type="text">Image plate multi-scan response to fusion protons in the range of 1–14 MeV
Vanderloo, N; Cufari, M; Russell, L; Johnson, TM; Vargas, J; Foo, BC; Buschmann, BI; Dannhoff, SG; DeVault, A; Evans, TE; Kunimune, JH; Lawrence, Y; Pearcy, JA; Reichelt, BL; Wink, CW; Gatu Johnson, M; Petrasso, RD; Frenje, JA; Li, CK
Image plates (IPs) are a quickly recoverable and reusable radiation detector often used to measure proton and x-ray fluence in laser-driven experiments. Recently, IPs have been used in a proton radiography detector stack on the OMEGA laser, a diagnostic historically implemented with CR-39, or radiochromic film. The IPs used in this and other diagnostics detect charged particles, neutrons, and x-rays indiscriminately. IPs detect radiation using a photo-stimulated luminescence (PSL) material, often phosphor, in which electrons are excited to metastable states by ionizing radiation. Protons at MeV energies deposit energy deeper into the IP compared with x rays below ∼20 keV due to the Bragg peak present for protons. This property is exploited to discriminate between radiation types. Doses of mono-energetic protons between 1.7 and 14 MeV are applied to IPs using the MIT linear electrostatic ion accelerator. This paper presents the results from consecutive scans of IPs irradiated with different proton energies. The PSL ratios between subsequent scans are shown to depend on proton energy, with higher energy protons having lower PSL ratios for each scan. This finding is separate from the known energy dependence in the absolute sensitivity of IPs. The results can be compared to complimentary work on x rays, showing a difference between protons and x rays, forging a path to discriminate between proton and x-ray fluence in mixed radiation environments.
</summary>
<dc:date>2024-09-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>A compact and portable gamma-ray spectrometer (GRASP) for inertial confinement fusion and basic science experiments</title>
<link href="https://hdl.handle.net/1721.1/165059" rel="alternate"/>
<author>
<name>Dannhoff, SG</name>
</author>
<author>
<name>Wink, CW</name>
</author>
<author>
<name>Mackie, S</name>
</author>
<author>
<name>Berg, GPA</name>
</author>
<author>
<name>Frenje, JA</name>
</author>
<id>https://hdl.handle.net/1721.1/165059</id>
<updated>2026-05-08T03:13:22Z</updated>
<published>2024-08-05T00:00:00Z</published>
<summary type="text">A compact and portable gamma-ray spectrometer (GRASP) for inertial confinement fusion and basic science experiments
Dannhoff, SG; Wink, CW; Mackie, S; Berg, GPA; Frenje, JA
A compact and portable gamma-ray spectrometer has been designed to diagnose different components of the inertial confinement fusionrelevant γ-ray spectrum with energies between ∼3.7–17.9 MeV. The system is designed to be as compact as possible for convenient transportation and fielding in diagnostic ports on the OMEGA laser, the National Ignition Facility, and other photon-source facilities. The system consists of a conversion foil for Compton scattering in front of four magnetic spectrometer “arms,” each covering a different energy range and constructed out of cylindrical permanent magnet Halbach arrays. Monte Carlo simulations have been used to optimize and assess the performance of the conversion foil, and COSY INFINITY ion-optical simulations have been used to optimize the spectrometer magnets. The performance of the design is assessed for a simulated direct-drive γ-ray spectrum. Spanning its total γ-ray energy bandwidth and using a 1.7 mm thick boron conversion foil, the system’s total energy resolution and efficiency are ∼15.8%–4.5% and 5.4 × 10−7 –3.7 × 10−7 e − /γ, respectively, with room for improvement. Spectral γ-ray measurements will provide guidance to the inertial confinement fusion program toward achieving high-energy gain relevant to inertial fusion energy and enable new measurement capabilities for basic discovery science.
</summary>
<dc:date>2024-08-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Characterization of the image plate multi-scan response to mono-energetic x-rays</title>
<link href="https://hdl.handle.net/1721.1/165058" rel="alternate"/>
<author>
<name>Cufari, M</name>
</author>
<author>
<name>Vanderloo, N</name>
</author>
<author>
<name>Buschmann, BI</name>
</author>
<author>
<name>DeVault, A</name>
</author>
<author>
<name>Foo, BC</name>
</author>
<author>
<name>Vargas, J</name>
</author>
<author>
<name>Dannhoff, SG</name>
</author>
<author>
<name>Evans, TE</name>
</author>
<author>
<name>Johnson, TM</name>
</author>
<author>
<name>Kunimune, J</name>
</author>
<author>
<name>Lawrence, Y</name>
</author>
<author>
<name>Pearcy, JA</name>
</author>
<author>
<name>Reichelt, BL</name>
</author>
<author>
<name>Russell, L</name>
</author>
<author>
<name>Wink, CW</name>
</author>
<author>
<name>Gatu Johnson, M</name>
</author>
<author>
<name>Petrasso, RD</name>
</author>
<author>
<name>Frenje, JA</name>
</author>
<id>https://hdl.handle.net/1721.1/165058</id>
<updated>2026-05-08T03:12:39Z</updated>
<published>2024-09-24T00:00:00Z</published>
<summary type="text">Characterization of the image plate multi-scan response to mono-energetic x-rays
Cufari, M; Vanderloo, N; Buschmann, BI; DeVault, A; Foo, BC; Vargas, J; Dannhoff, SG; Evans, TE; Johnson, TM; Kunimune, J; Lawrence, Y; Pearcy, JA; Reichelt, BL; Russell, L; Wink, CW; Gatu Johnson, M; Petrasso, RD; Frenje, JA
Image plates (IPs), or phosphor storage screens, are a technology employed frequently in inertial confinement fusion (ICF) and high energy density plasma (HEDP) diagnostics because of their sensitivity to many types of radiation, including, x rays, protons, alphas, beta particles, and neutrons. Prior studies characterizing IPs are predicated on the signal level remaining below the scanner saturation threshold. Since the scanning process removes some signal from the IP via photostimulated luminescence, repeatedly scanning an IP can bring the signal level below the scanner saturation threshold. This process, in turn, raises concerns about the signal response of IPs after an arbitrary number of scans and whether such a process yields, for example, a constant ratio of signal between the nth and n + 1st scan. Here, the sensitivity of IPs is investigated when scanned multiple times. It is demonstrated that the ratio of signal decay is not a constant with the number of scans and that the signal decay depends on the x-ray energy. As such, repeatedly scanning an IP with a mixture of signal types (e.g., x ray, neutron, and protons) enables ICF and HEDP diagnostics employing IPs to better isolate a particular signal type.
</summary>
<dc:date>2024-09-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Microbially-enhanced dissolution of calcite in sinking marine particles</title>
<link href="https://hdl.handle.net/1721.1/165057" rel="alternate"/>
<author>
<name>Borer, Benedict</name>
</author>
<author>
<name>Subhas, Adam V.</name>
</author>
<author>
<name>Hayden, Matthew G.</name>
</author>
<author>
<name>Woosley, Ryan J.</name>
</author>
<author>
<name>Babbin, Andrew R.</name>
</author>
<id>https://hdl.handle.net/1721.1/165057</id>
<updated>2026-04-24T03:15:02Z</updated>
<published>2026-03-09T00:00:00Z</published>
<summary type="text">Microbially-enhanced dissolution of calcite in sinking marine particles
Borer, Benedict; Subhas, Adam V.; Hayden, Matthew G.; Woosley, Ryan J.; Babbin, Andrew R.
Evidence for the shallow cycling of calcium carbonate in the global ocean is mounting, but the mechanisms driving the dissolution of thermodynamically stable polymorphs, like aragonite and calcite, in the surface ocean remain unconstrained. Here, we quantify how microbial metabolism creates acidic microenvironments in marine particles that enhance the local dissolution of calcite despite supersaturated conditions in bulk waters. A temporal decoupling of particle deoxygenation and acidification suggests that respiration-derived carbon dioxide is not the sole driver of the observed undersaturation. Rapid dissolution occurs in particles exhibiting bacterial growth, with rates exceeding abiotic dissolution at the same bulk saturation by more than an order of magnitude. We observe the highest particle-associated dissolution rates at intermediate settling velocities, indicating that a trade-off between elevated mass transfer due to settling and bacterial respiration governs the ensuing dissolution rates. Translation of our experiments to the water column suggests that microbially driven undersaturation in marine particles may dissolve sufficient calcite in the mesopelagic ocean to extend particle transit times by eliminating this vital ballast mineral, reducing the efficiency of organic carbon sequestration.
</summary>
<dc:date>2026-03-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Process cost analysis of performance challenges and their mitigations in sodium-ion battery cathode materials</title>
<link href="https://hdl.handle.net/1721.1/165056" rel="alternate"/>
<author>
<name>Munjal, Mrigi</name>
</author>
<author>
<name>Prein, Thorben</name>
</author>
<author>
<name>Ramadan, Mahmoud M.</name>
</author>
<author>
<name>Smith, Hugh B.</name>
</author>
<author>
<name>Venugopal, Vineeth</name>
</author>
<author>
<name>Rupp, Jennifer L.M.</name>
</author>
<author>
<name>Abate, Iwnetim I.</name>
</author>
<author>
<name>Olivetti, Elsa A.</name>
</author>
<author>
<name>Huang, Kevin J.</name>
</author>
<id>https://hdl.handle.net/1721.1/165056</id>
<updated>2026-03-10T03:07:47Z</updated>
<published>2025-05-21T00:00:00Z</published>
<summary type="text">Process cost analysis of performance challenges and their mitigations in sodium-ion battery cathode materials
Munjal, Mrigi; Prein, Thorben; Ramadan, Mahmoud M.; Smith, Hugh B.; Venugopal, Vineeth; Rupp, Jennifer L.M.; Abate, Iwnetim I.; Olivetti, Elsa A.; Huang, Kevin J.
The success of sodium-ion batteries (SIBs) hinges on mitigating underperformance in ways that are cost effective, manufacturable, and scalable. This work investigates interfacial, morphological, and bulk interventions to enhance the performance of layered metal oxide cathode active materials (CAMs) for SIBs. We mapped the full space of literature-reported SIB CAM challenges and their mitigations. We then estimated the manufacturing costs for a diverse and representative set of mitigation approaches. Adding sacrificial salts can be cost effective, given low materials costs and minimal process changes. By contrast, many methods are reported to tune CAM morphology. Several are likely challenging at scale due to process throughput and yield limitations. Finally, bulk modifications can mitigate the moisture sensitivity of some CAMs, a likely less costly route than expanding stringent atmosphere controls during manufacturing. We end by discussing the limits and promise of process cost analysis, given the current state of battery reporting in the literature.
</summary>
<dc:date>2025-05-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Policy Analytics for Cybersecurity of Cyber-Physical Systems</title>
<link href="https://hdl.handle.net/1721.1/165055" rel="alternate"/>
<author>
<name>Choucri, Nazli</name>
</author>
<id>https://hdl.handle.net/1721.1/165055</id>
<updated>2026-03-06T03:00:51Z</updated>
<published>2024-10-08T00:00:00Z</published>
<summary type="text">Policy Analytics for Cybersecurity of Cyber-Physical Systems
Choucri, Nazli
Mounting concerns about safety and security have resulted in an intricate ecosystem system of&#13;
guidelines, compliance measures, directives and policy reports for cybersecurity of all critical&#13;
infrastructure. The policy paradox is that the text form of policy documents is an impediment to&#13;
the implementation of policies and directives and creates potentially powerful opportunity costs.&#13;
As a general practice, guidelines, directives and policy documents are presented in text form,&#13;
page-by-page and word-by-word all supported by figures, diagrams and tables as needed. By&#13;
definition text obscures properties of both policy and system-target in terms of dynamic&#13;
relationships, feedback, “drill-down”, leads and lags, and so forth.&#13;
The challenge is to develop analytics for cybersecurity policy of cyber physical systems. We begin&#13;
with constructing (a) a structured system model of the system, in order to (b) identify major policydefined&#13;
system-wide parameters, (c) situate system vulnerabilities, (d) map security requirements&#13;
to security objectives, and (e) advance research on how system properties respond to diverse&#13;
policy controls for security of cyber physical systems.&#13;
This Project addresses the hard problem of policy-governed secure collaboration related to cyberphysical&#13;
security of critical infrastructure (focusing on a generic and fundamental feature, namely&#13;
smart grid of electric power systems). The purpose is to (a) reduce, if not eliminate barriers to full&#13;
understanding of policy text as transmitted by the source, (b) explore system-wide or targeted&#13;
implications, (c) help contextualize generic directives for specific applications, and (d) facilitate&#13;
contingency analysis, as needed.&#13;
This Compilation is based on the Quarterly Research Reports submitted by MIT to the Cyber-&#13;
Physical Systems Organization of Vanderbilt University. The Compilation is the first of several&#13;
Reports highlighting the research process and products of the MIT Project on Policy Analytics for&#13;
Cybersecurity of Cyber-Physical Systems. Gaurav Agarwal [a.k.a. Gaurav], MIT alumnus, served&#13;
as Lead Researcher for the Proof-of-Concept case presented here.
</summary>
<dc:date>2024-10-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Summary of the Fourth ALMA Phasing Project (APP) Commissioning and Science Verification Mission: 2016 April 3-8</title>
<link href="https://hdl.handle.net/1721.1/165054" rel="alternate"/>
<author>
<name>Matthews, Lynn D.</name>
</author>
<author>
<name>Crew, G. B.</name>
</author>
<author>
<name>Fish, Vincent</name>
</author>
<id>https://hdl.handle.net/1721.1/165054</id>
<updated>2026-03-06T03:01:04Z</updated>
<published>2017-03-28T00:00:00Z</published>
<summary type="text">Summary of the Fourth ALMA Phasing Project (APP) Commissioning and Science Verification Mission: 2016 April 3-8
Matthews, Lynn D.; Crew, G. B.; Fish, Vincent
The primary objectives of the fourth APP CSV campaign were twofold: (1) to execute Very Long Baseline Interferometry (VLBI) observing mode (VOM) observations using Schedule Blocks (SBs); (2) to carry out the first end-to-end testing of intercontinental VLBI sessions in both Bands 3 and 6. While intercontinental VLBI fringes with ALMA&#13;
have already been obtained during previous CSV campaigns (Matthews &amp; Crew 2016b, c), those sessions were not conducted in a manner identical to future VLBI science campaigns&#13;
(i.e., they used manual execution of observing commands rather than SBs) and did not involve observations of a full suite of ALMA and VLBI calibrators. Secondary objectives of&#13;
the fourth CSV mission included further development work on an ALMA Phasing System (APS) graphical user interface (GUI), additional testing of the fast phasing loop (under a&#13;
wider variety of weather conditions), tests of the phasing system in Band 7 (in support of an ongoing North America ALMA Study award), and the training of ALMA staﬀ in the&#13;
operation of the VOM and the APS hardware and software.  This is a report of the activities of this campaign.
This report was prepared to report on APP commissioning progress, provided as ALMA Technical Note #19.
</summary>
<dc:date>2017-03-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Summary of the Third ALMA Phasing Project (APP) Commissioning and Science Verification Mission: 2015 July 28-August 3</title>
<link href="https://hdl.handle.net/1721.1/165053" rel="alternate"/>
<author>
<name>Matthews, Lynn D.</name>
</author>
<author>
<name>Crew, G. B.</name>
</author>
<id>https://hdl.handle.net/1721.1/165053</id>
<updated>2026-03-06T03:01:12Z</updated>
<published>2015-09-14T00:00:00Z</published>
<summary type="text">Summary of the Third ALMA Phasing Project (APP) Commissioning and Science Verification Mission: 2015 July 28-August 3
Matthews, Lynn D.; Crew, G. B.
The primary objective for the third APP CSV campaign was to perform intercontinental Very Long Baseline Interferometry (VLBI) fringe tests between phased ALMA and remote stations in Band 3, Band 6, and (conditions permitting) Band 7. Secondary objectives included preparations for making the APS available to the community for ALMA Cycle 4 and training ALMA staff in the operation of the ALMA Phasing System (APS).  This is a report of those activities.
This report was prepared to report on APP commissioning progress, provided as ALMA Technical Note #18.
</summary>
<dc:date>2015-09-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Summary of the Second ALMA Phasing Project (APP) Commissioning and Science Verification Mission: 2015 March 24-30</title>
<link href="https://hdl.handle.net/1721.1/165052" rel="alternate"/>
<author>
<name>Matthews, Lynn D.</name>
</author>
<author>
<name>Crew, G. B.</name>
</author>
<id>https://hdl.handle.net/1721.1/165052</id>
<updated>2026-03-06T03:01:14Z</updated>
<published>2015-09-04T00:00:00Z</published>
<summary type="text">Summary of the Second ALMA Phasing Project (APP) Commissioning and Science Verification Mission: 2015 March 24-30
Matthews, Lynn D.; Crew, G. B.
The primary objective for the second APP CSV campaign was to test and characterize the phasing system, including the recent changes in the handling of the front-end delays. Secondary goals were to repeat the local VLBI test between ALMA and an antenna at the Operations Support Facility (OSF) (also attempted during the January mission) and to obtain a short VLBI recording on a calibrator source with ALMA and one or more stations operating as part of the Event Horizon Telescope (EHT) network, thus allowing demonstration of an intercontinental VLBI fringe.  This is a report of the week's activities.
This report was prepared to report on APP commissioning progress, provided as ALMA Technical Note #17.
</summary>
<dc:date>2015-09-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Summary of the First ALMA Phasing Project (APP) Commissioning and Science Verification Mission: 2015 January 6-13</title>
<link href="https://hdl.handle.net/1721.1/165051" rel="alternate"/>
<author>
<name>Matthews, Lynn D.</name>
</author>
<author>
<name>Crew, G. B.</name>
</author>
<id>https://hdl.handle.net/1721.1/165051</id>
<updated>2026-03-06T03:01:08Z</updated>
<published>2015-03-29T00:00:00Z</published>
<summary type="text">Summary of the First ALMA Phasing Project (APP) Commissioning and Science Verification Mission: 2015 January 6-13
Matthews, Lynn D.; Crew, G. B.
The first Commissioning and Science Verification (CSV) mission for the ALMA Phasing Project (APP) took place during the ALMA EOC Week from 2015 January 6-13. The formal commencement of APP CSV activities followed the provisional acceptance of the APP hardware during a formal review by JAO that took place on 2014 December 11.  This is a report of activities during the week.
This report was prepared to report on APP commissioning progress, provided as ALMA Technical Note #16.
</summary>
<dc:date>2015-03-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>ALMA North America Cycle 4 Study Project Final Report: Diversifying the Applications of the ALMA Phasing System</title>
<link href="https://hdl.handle.net/1721.1/165050" rel="alternate"/>
<author>
<name>Matthews, Lynn D.</name>
</author>
<author>
<name>Crew, G.</name>
</author>
<author>
<name>Hecht, M. H.</name>
</author>
<id>https://hdl.handle.net/1721.1/165050</id>
<updated>2026-03-06T03:01:06Z</updated>
<published>2018-09-01T00:00:00Z</published>
<summary type="text">ALMA North America Cycle 4 Study Project Final Report: Diversifying the Applications of the ALMA Phasing System
Matthews, Lynn D.; Crew, G.; Hecht, M. H.
The Atacama Millimeter/submillimeter Array (ALMA) Phasing Project (APP) produced the hardware and software modifications necessary to bring Very Long Baseline Interferometry (VLBI) capabilities to ALMA. The resulting VLBI observing mode was introduced to the science community in ALMA Cycle 4 (2017), and two VLBI science campaigns have now been carried out successfully at ALMA. The current Cycle 4 ALMA North America (NA) Study was proposed&#13;
to lay the groundwork for a variety of enhancements to the ALMA Phasing System (APS) that were not within the scope of the original APP project. These include: (1) devising an improved method for the handling of baseband delays; (2) development of procedures for use of the APS on fainter astronomical sources than is presently possible; (3) development of data acquisition and correlation techniques to allow the APS to be used for spectral line VLBI experiments. These&#13;
tasks were intended as preparatory steps for a future full-scale implementation project (if approved). Formal approval of this implementation work has now been granted and is funded through an ALMA Cycle 5 NA Development project known as APP “Phase 2” (APP-2). As a result, efforts to implement capabilities designed and explored under the current Cycle 4 Study, as well as a previous Cycle 3 Study award, are now underway. This report provides a status summary of Cycle 4 activities and outlines follow-on work that is continuing as part of the ongoing Cycle 5 Development efforts.
</summary>
<dc:date>2018-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>ALMA North America Cycle 3 Study Project Final Report: Extensions and Enhancements to the ALMA Phasing System</title>
<link href="https://hdl.handle.net/1721.1/165049" rel="alternate"/>
<author>
<name>Matthews, L.</name>
</author>
<author>
<name>Crew, G.</name>
</author>
<author>
<name>Hecht, M. H.</name>
</author>
<id>https://hdl.handle.net/1721.1/165049</id>
<updated>2026-03-06T03:01:09Z</updated>
<published>2018-05-01T00:00:00Z</published>
<summary type="text">ALMA North America Cycle 3 Study Project Final Report: Extensions and Enhancements to the ALMA Phasing System
Matthews, L.; Crew, G.; Hecht, M. H.
The Atacama Millimeter/submillimeter Array (ALMA) Phasing Project (APP) has successfully brought Very Long Baseline Interferometry (VLBI) to ALMA. Nine VLBI science projects were observed in 2017 during ALMA’s in augural VLBI campaign as part of Cycle 4. This marked the culmination of an international 5-year effort that involved both hardware and software contribu-&#13;
tions from the APP Team to the ALMA Observatory. A Cycle 3 ALMA North America (NA) Study was proposed to enable ongoing support of VLBI at ALMA and the investigation of enhancements to the ALMA Phasing System (APS) that were not within the scope of the original APP project. These included: (1) an extension of phasing capabilities to the submilleter (Band 7); (2) an exploration of correlation techniques to compensate for the mismatch in sampling rates between ALMA and other VLBI stations; (3) prescriptions for optimization of ALMA baseband delay application; (4) defining and documenting data calibration and analysis pathways for experiments utilizing phased ALMA data.&#13;
This report summarizes outcomes from the Cycle 3 Study. Work on the APP remains ongoing under a Cycle 4 Study award and will continue under a pending ALMA NA Cycle 5 Development Project that is expected to enable full implementation of the capabilities explored under the Cycle 3 and Cycle 4 Studies.
</summary>
<dc:date>2018-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Pulsars, Magnetars, and Transients with Phased ALMA, Final Report</title>
<link href="https://hdl.handle.net/1721.1/165048" rel="alternate"/>
<author>
<name>Cordes, James</name>
</author>
<author>
<name>Blackburn, Lindy</name>
</author>
<author>
<name>Chatterjee, Shami</name>
</author>
<author>
<name>Crew, Geoffrey</name>
</author>
<author>
<name>Devignes, Gregory</name>
</author>
<author>
<name>Doeleman, Shep</name>
</author>
<author>
<name>Kramer, Michael</name>
</author>
<author>
<name>Lazio, Joe</name>
</author>
<author>
<name>Liu, Kuo</name>
</author>
<author>
<name>Ransom, Scott</name>
</author>
<id>https://hdl.handle.net/1721.1/165048</id>
<updated>2026-03-06T03:01:05Z</updated>
<published>2017-10-01T00:00:00Z</published>
<summary type="text">Pulsars, Magnetars, and Transients with Phased ALMA, Final Report
Cordes, James; Blackburn, Lindy; Chatterjee, Shami; Crew, Geoffrey; Devignes, Gregory; Doeleman, Shep; Kramer, Michael; Lazio, Joe; Liu, Kuo; Ransom, Scott
The present study developed fast time-domain capability for the ALMA phased-array system that is needed for observations of compact objects in the Galactic center and elsewhere in the Galaxy. ALMA can provide unparalleled sensitivity to a spectral region that has been poorly explored for neutron stars.  Observations at mm and sub-mm wavelengths have the potential for providing decisive observational constraints on emission processes from the magnetospheres of neutron stars. ALMA is also important for surveys for pulsars and transients in the Galactic center.  This is a final report of the work performed.
</summary>
<dc:date>2017-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Final Report: ALMA Phasing Project Augmentation</title>
<link href="https://hdl.handle.net/1721.1/165047" rel="alternate"/>
<author>
<name>Matthews, Lynn D.</name>
</author>
<id>https://hdl.handle.net/1721.1/165047</id>
<updated>2026-03-06T03:01:10Z</updated>
<published>2017-05-24T00:00:00Z</published>
<summary type="text">Final Report: ALMA Phasing Project Augmentation
Matthews, Lynn D.
This report provides a summary of activities carried out under the NA ALMA Development Fund award to augment the National Science Foundation MRI award for the ALMA Beamformer proposal, performed as the ALMA Phasing Project.
</summary>
<dc:date>2017-05-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>MRI: Development of an ALMA Beamformer for Ultra High Resolution VLBI and High Frequency Phased Array Science</title>
<link href="https://hdl.handle.net/1721.1/165046" rel="alternate"/>
<author>
<name>Matthews, Lynn D.</name>
</author>
<id>https://hdl.handle.net/1721.1/165046</id>
<updated>2026-03-06T03:01:11Z</updated>
<published>2016-12-12T00:00:00Z</published>
<summary type="text">MRI: Development of an ALMA Beamformer for Ultra High Resolution VLBI and High Frequency Phased Array Science
Matthews, Lynn D.
This is the final report covering the activities of the National Science Foundation MRI Award number 1126433.
</summary>
<dc:date>2016-12-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cycle 11 VLBI Acceptance: Delay Fix Final Report</title>
<link href="https://hdl.handle.net/1721.1/165045" rel="alternate"/>
<author>
<name>Crew, Geoffrey B.</name>
</author>
<author>
<name>Matthews, Lynn D.</name>
</author>
<id>https://hdl.handle.net/1721.1/165045</id>
<updated>2026-03-06T03:01:07Z</updated>
<published>2024-08-20T00:00:00Z</published>
<summary type="text">Cycle 11 VLBI Acceptance: Delay Fix Final Report
Crew, Geoffrey B.; Matthews, Lynn D.
This report presents details of changes to the VLBI software system made on the path to the Cycle 11 Acceptance. The principal new feature is the long-awaited "delay fix" to the APS that is presented in considerable detail here. This was proposed for a new ADF implementation project, APP2. The delay fix is a technology that allows the full 2-GHz continuum band to be used in active phasing, resulting results in a lower flux density limit for direct observation of science targets. It also allows a greater range of passive phasing targets to support weaker targets. Work on the delay fix began during Cycle 3 and is only now concluded in time for additional testing as desired in Cycle 11 and then full use in Cycle 12. Other than the delay fix, a new software device was delivered to support the new hydrogen maser, and there was the usual round of minor scripting updates in the SSR component. This report is written to present a largely self-contained history of the delay fix effort and its fruit, and it also covers the other, minor development items which are formally part of the Cycle 11 Acceptance. As the software phasing engine which supports this mode is also now the recommended engine for the APS, this document also serves to present relatively complete documentation on the final implementation of the SSR as well as TelCal sides of the APS. The underlying VOM remains as it was deployed and used in Cycle 4.
</summary>
<dc:date>2024-08-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>ObsMode2022 Cycle 10 Go/No-Go Report for VLBI Capabilities</title>
<link href="https://hdl.handle.net/1721.1/165044" rel="alternate"/>
<author>
<name>Matthews, Lynn D.</name>
</author>
<author>
<name>Crew, Geoff</name>
</author>
<author>
<name>Fish, Vincent</name>
</author>
<author>
<name>Messias, Hugo</name>
</author>
<author>
<name>Titus, Mike</name>
</author>
<author>
<name>Krichbaum, Thomas</name>
</author>
<id>https://hdl.handle.net/1721.1/165044</id>
<updated>2026-03-06T03:01:13Z</updated>
<published>2022-11-04T00:00:00Z</published>
<summary type="text">ObsMode2022 Cycle 10 Go/No-Go Report for VLBI Capabilities
Matthews, Lynn D.; Crew, Geoff; Fish, Vincent; Messias, Hugo; Titus, Mike; Krichbaum, Thomas
We present here a report on the Very Long Baseline Interferometry (VLBI) development efforts under consideration at ALMA as new offerings in Cycle 10. These activities are being carried out under the ALMA North America Development Project known as the ALMA Phasing Project Phase 3 (APP3). The two VLBI priorities previously identified for Cycle 10 by the ObsMode process are: (1) spectral line VLBI with flexible tuning; (2) panchromatic VLBI for spectral line and continuum (Bands 1, 3, 6 and 7, with provisions for extension to any other band). This document provides an overview of the development, testing, and readiness of these capabilities. Some updates on minor development efforts are also provided.
This report was prepared for the formal acceptance of the software required for Cycle 10.  Notionally it is ALMA Technical Note #25, but not published (yet) as such.
</summary>
<dc:date>2022-11-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cycle 8 (2021–2022) VLBI Delta Acceptance Report</title>
<link href="https://hdl.handle.net/1721.1/165043" rel="alternate"/>
<author>
<name>Crew, Geoff</name>
</author>
<author>
<name>Vila-Vilaro, Baltasar</name>
</author>
<id>https://hdl.handle.net/1721.1/165043</id>
<updated>2026-03-06T03:01:03Z</updated>
<published>2022-02-09T00:00:00Z</published>
<summary type="text">Cycle 8 (2021–2022) VLBI Delta Acceptance Report
Crew, Geoff; Vila-Vilaro, Baltasar
This report summarizes the acceptance process for VLBI which was carried out in 2021&#13;
as part of the normal Cycle 8 Acceptance and later, through the 2021–2022 preparations&#13;
for the 2022 VLBI Campaigns. It reviews the hardware setup and checks that must&#13;
be made at various times prior to any observations with VLBI peers. Then there is a&#13;
suite of offline tests of the SB-generation that include observation simulation. There is&#13;
also a suite of on-sky regression tests that exercise the ALMA Phasing System (APS).&#13;
The final step of the acceptance has historically been the execution of a short “dress&#13;
rehearsal” (DR) usually in January of the cycle year with the Event Horizon Telescope&#13;
(EHT) to provide end-to-end validation of the system via fringes to remote peers.&#13;
Collectively these tests establish that the science VLBI projects may proceed without&#13;
issue.
This report was prepared for the formal acceptance of the software required for Cycle 8.  Notionally, it is ALMA Technical Note #24, but not published (yet) as such.
</summary>
<dc:date>2022-02-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design of a diamond-based in-vessel soft x-ray detector for the SPARC tokamak</title>
<link href="https://hdl.handle.net/1721.1/165042" rel="alternate"/>
<author>
<name>Normile, S</name>
</author>
<author>
<name>Vezinet, D</name>
</author>
<author>
<name>Perks, C</name>
</author>
<author>
<name>Bombarda, F</name>
</author>
<author>
<name>Verona-Rinati, G</name>
</author>
<author>
<name>Rice, JE</name>
</author>
<author>
<name>Verona, C</name>
</author>
<author>
<name>Raso, AM</name>
</author>
<author>
<name>Angelone, M</name>
</author>
<id>https://hdl.handle.net/1721.1/165042</id>
<updated>2026-03-06T03:09:00Z</updated>
<published>2024-09-24T00:00:00Z</published>
<summary type="text">Design of a diamond-based in-vessel soft x-ray detector for the SPARC tokamak
Normile, S; Vezinet, D; Perks, C; Bombarda, F; Verona-Rinati, G; Rice, JE; Verona, C; Raso, AM; Angelone, M
The in-vessel silicon diode arrays that are used for soft x-ray detection in many tokamaks are sensitive to neutron damage, making them unsuitable for burning plasma devices such as SPARC. In such a device, the silicon diodes would need to be placed far from the plasma—limiting their field of view—or an alternative detector could be used. Here, we present the design of a camera containing an array of chemical vapor deposition single-crystal diamonds, which will be placed in the upper and lower port plugs of the SPARC tokamak with a large enough view of the poloidal cross section to enable tomographic inversion. The camera design presented here is optimized to provide a wide field of view of the poloidal cross section. Simulated plasma conditions are used to estimate the x-ray signal that this detector array will receive and to fine-tune the camera placement within the tokamak.
</summary>
<dc:date>2024-09-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of the prototype for the SPARC hard X-ray monitor</title>
<link href="https://hdl.handle.net/1721.1/165041" rel="alternate"/>
<author>
<name>Panontin, E</name>
</author>
<author>
<name>Tinguely, RA</name>
</author>
<author>
<name>Hartwig, ZS</name>
</author>
<author>
<name>Saltos, AA</name>
</author>
<author>
<name>Vezinet, D</name>
</author>
<author>
<name>Rice, J</name>
</author>
<id>https://hdl.handle.net/1721.1/165041</id>
<updated>2026-03-06T03:08:57Z</updated>
<published>2024-08-05T00:00:00Z</published>
<summary type="text">Development of the prototype for the SPARC hard X-ray monitor
Panontin, E; Tinguely, RA; Hartwig, ZS; Saltos, AA; Vezinet, D; Rice, J
The SPARC tokamak will be equipped with a hard X-ray (HXR) monitor system capable of measuring the bremsstrahlung emission from runaway electrons with photon energies in excess of about 100 keV. This diagnostic will detect the formation of runaway electron beams during plasma start-up and inform the plasma control system to terminate the discharge early to protect the machine. In this work, we present a 0D estimate of the HXR emission in SPARC during plasma start-up. Then we discuss the characterization of a prototype of the HXR monitor. The detector mounts a 1 × 1-in.2 LaBr3 inorganic scintillator coupled with a photomultiplier tube and has been tested with γ-ray sources to find its dynamic range. Finally, two possible modes of operation for spectroscopic and current mode measurements on SPARC are proposed.
</summary>
<dc:date>2024-08-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Perspectives on pilot-wave hydrodynamics</title>
<link href="https://hdl.handle.net/1721.1/165040" rel="alternate"/>
<author>
<name>Bush, John WM</name>
</author>
<author>
<name>Frumkin, Valeri</name>
</author>
<author>
<name>Sáenz, Pedro J</name>
</author>
<id>https://hdl.handle.net/1721.1/165040</id>
<updated>2026-03-06T03:08:58Z</updated>
<published>2024-07-15T00:00:00Z</published>
<summary type="text">Perspectives on pilot-wave hydrodynamics
Bush, John WM; Frumkin, Valeri; Sáenz, Pedro J
We present a number of fresh perspectives on pilot-wave hydrodynamics, the field initiated in 2005 by Couder and Fort's discovery that millimetric droplets self-propelling along the surface of a vibrating bath can capture certain features of quantum systems. A recurring theme will be that pilot-wave hydrodynamics furnishes a classical framework for reproducing many quantum phenomena and allows one to rationalize such phenomena mechanistically, from a local realist perspective, obviating the need to appeal to quantum nonlocality. The distinction is drawn between hydrodynamic pilot-wave theory and its quantum counterparts, Bohmian mechanics, the Bohm–Vigier stochastic pilot-wave theory, and de Broglie's theory of the double-solution. Each of these quantum predecessors provide a valuable touchstone as we take the physical picture engendered in the walking droplets and extend it into the quantum realm via theoretical modeling. Emphasis is given to recent developments in the field, both experimental and conceptual, and to forecasting potentially fruitful new directions.
</summary>
<dc:date>2024-07-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Automated transient grating spectroscopy mapping and signal control for large samples</title>
<link href="https://hdl.handle.net/1721.1/165039" rel="alternate"/>
<author>
<name>Weaver, Colin</name>
</author>
<author>
<name>Stapelberg, Myles</name>
</author>
<author>
<name>Short, Michael P</name>
</author>
<author>
<name>Wylie, Angus</name>
</author>
<author>
<name>Artalejo, Elena Botica</name>
</author>
<id>https://hdl.handle.net/1721.1/165039</id>
<updated>2026-03-06T03:08:55Z</updated>
<published>2024-07-10T00:00:00Z</published>
<summary type="text">Automated transient grating spectroscopy mapping and signal control for large samples
Weaver, Colin; Stapelberg, Myles; Short, Michael P; Wylie, Angus; Artalejo, Elena Botica
We present developments for the mapping of large areas using transient grating spectroscopy (TGS) that allow for smoother, larger, autonomous measurements of material samples. The addition of a precise linear stage in the direction parallel to laser sampling coupled with signal optimizing control allows for hands free, self-correcting measurements. In addition, the simplification of the sample holding design to a form that is small enough to mount directly to the linear stage exhibits a straightforward, low-cost solution for automated TGS applications. This capability is demonstrated by taking large uninterrupted maps of gradient wafers, and the results are validated on calibrated tungsten samples and control TGS samples from gradient wafers.
</summary>
<dc:date>2024-07-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Manipulating the duration of picoinjection controls the injected volume of individual droplets</title>
<link href="https://hdl.handle.net/1721.1/165038" rel="alternate"/>
<author>
<name>Thakur, R.</name>
</author>
<author>
<name>Weitz, D.</name>
</author>
<id>https://hdl.handle.net/1721.1/165038</id>
<updated>2026-03-06T03:09:01Z</updated>
<published>2024-07-02T00:00:00Z</published>
<summary type="text">Manipulating the duration of picoinjection controls the injected volume of individual droplets
Thakur, R.; Weitz, D.
The ability to add reagents into droplets is required in many microfluidic workflows. Picoinjection can address this need; however, it is unable to control the injection volume for each individual droplet. Here, we present an improved picoinjection method that can inject controlled volumes into individual droplets. We achieve this by adjusting the injection duration for each picoinjection event. This improved picoinjection method can be used to create complex microfluidic workflows that are able to control the biochemical composition of individual droplets.
</summary>
<dc:date>2024-07-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multitask methods for predicting molecular properties from heterogeneous data</title>
<link href="https://hdl.handle.net/1721.1/165037" rel="alternate"/>
<author>
<name>Fisher, KE</name>
</author>
<author>
<name>Herbst, MF</name>
</author>
<author>
<name>Marzouk, YM</name>
</author>
<id>https://hdl.handle.net/1721.1/165037</id>
<updated>2026-03-06T03:08:49Z</updated>
<published>2024-07-03T00:00:00Z</published>
<summary type="text">Multitask methods for predicting molecular properties from heterogeneous data
Fisher, KE; Herbst, MF; Marzouk, YM
Data generation remains a bottleneck in training surrogate models to predict molecular properties. We demonstrate that multitask Gaussian process regression overcomes this limitation by leveraging both expensive and cheap data sources. In particular, we consider training sets constructed from coupled-cluster (CC) and density functional theory (DFT) data. We report that multitask surrogates can predict at CC-level accuracy with a reduction in data generation cost by over an order of magnitude. Of note, our approach allows the training set to include DFT data generated by a heterogeneous mix of exchange–correlation functionals without imposing any artificial hierarchy on functional accuracy. More generally, the multitask framework can accommodate a wider range of training set structures—including the full disparity between the different levels of fidelity—than existing kernel approaches based on Δ-learning although we show that the accuracy of the two approaches can be similar. Consequently, multitask regression can be a tool for reducing data generation costs even further by opportunistically exploiting existing data sources.
</summary>
<dc:date>2024-07-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.344 Cellular Metabolism and Cancer: Nature or Nurture?, Fall 2018</title>
<link href="https://hdl.handle.net/1721.1/165036" rel="alternate"/>
<author>
<name>Lau, Allison</name>
</author>
<author>
<name>Lien, Evan</name>
</author>
<id>https://hdl.handle.net/1721.1/165036</id>
<updated>2026-03-09T18:17:48Z</updated>
<published>2018-01-01T00:00:00Z</published>
<summary type="text">7.344 Cellular Metabolism and Cancer: Nature or Nurture?, Fall 2018
Lau, Allison; Lien, Evan
In this course we will explore how altered metabolism drives cancer progression. Students will learn (1) how to read, discuss, and critically evaluate scientific findings in the primary research literature, (2) how scientists experimentally approach fundamental issues in biology and medicine, (3) how recent findings have challenged the traditional “textbook” understanding of metabolism and given us new insight into cancer, and (4) how a local pharmaceutical company is developing therapeutics to target cancer metabolism in an effort to revolutionize cancer therapy.
</summary>
<dc:date>2018-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.343 Single-Molecule Imaging: Capturing Nanoscale Cellular Machines in Action, Fall 2021</title>
<link href="https://hdl.handle.net/1721.1/165035" rel="alternate"/>
<author>
<name>Kose, Hazal B.</name>
</author>
<id>https://hdl.handle.net/1721.1/165035</id>
<updated>2026-03-09T18:16:55Z</updated>
<published>2021-01-01T00:00:00Z</published>
<summary type="text">7.343 Single-Molecule Imaging: Capturing Nanoscale Cellular Machines in Action, Fall 2021
Kose, Hazal B.
Did you know that we have approximately 2 meters of DNA packed in our cells, which are less than 10 μm diameter? Or that to replicate DNA it is copied at a rate of 70,000 basepairs per second by a cellular apparatus that coordinates at least six different enzymes? Or that microtubules form greater than 1 meter long “railways” upon which molecular machines transport cargo within nerve cells? In this course, we will explore how single-molecule imaging techniques capture the mega-cellular machines working in real-time.&#13;
&#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2021-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.342 Immune Cell Migration: On the Move in Response to Pathogens and Cancer Immunotherapy, Fall 2021</title>
<link href="https://hdl.handle.net/1721.1/165034" rel="alternate"/>
<author>
<name>Fessenden, Timothy</name>
</author>
<id>https://hdl.handle.net/1721.1/165034</id>
<updated>2026-03-09T18:16:00Z</updated>
<published>2021-01-01T00:00:00Z</published>
<summary type="text">7.342 Immune Cell Migration: On the Move in Response to Pathogens and Cancer Immunotherapy, Fall 2021
Fessenden, Timothy
The mammalian immune system is sometimes called a “liquid organ,” capable of rapidly initiating and then resolving potent responses to pathogens at almost any location in the organism. What protein machinery drives immune cells’ rapid migration? How do cells make pathfinding decisions around barriers? How do they find rare pathogens or target cells in complex environments?&#13;
&#13;
This course will begin by examining the general immunological functions of two major immune cell types—T cells and dendritic cells. Through our readings and discussions, we will examine the connections between immunotherapy as an emerging treatment modality for a variety of cancers and the migration of immune cells.&#13;
&#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2021-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.341 Turning Evolutionary Dials: Directed Evolution Techniques for Climate Change and Beyond, Spring 2022</title>
<link href="https://hdl.handle.net/1721.1/165033" rel="alternate"/>
<author>
<name>Kizer, Megan</name>
</author>
<author>
<name>Wilson, Robbie</name>
</author>
<id>https://hdl.handle.net/1721.1/165033</id>
<updated>2026-03-09T18:15:19Z</updated>
<published>2022-01-01T00:00:00Z</published>
<summary type="text">7.341 Turning Evolutionary Dials: Directed Evolution Techniques for Climate Change and Beyond, Spring 2022
Kizer, Megan; Wilson, Robbie
This course will cover the many ways in which we have realized evolution in the laboratory toward functional biomolecules, such as protein and nucleic-acid-based therapeutics, enzymes that catalyze production of synthetic drugs, and carbon-dioxide capture molecules to lessen the impact of climate change. Students will both become familiar with the field of directed molecular evolution and learn how to critically analyze primary research papers, design research experiments, and present data relating to molecular biology and evolution. The importance of directed evolution in biomedical and biotechnological careers, both academic and industrial, will be highlighted.&#13;
&#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2022-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.342 Synapse Remodeling in Health and Disease, Fall 2022</title>
<link href="https://hdl.handle.net/1721.1/165032" rel="alternate"/>
<author>
<name>Ordonez, Dalila</name>
</author>
<author>
<name>Boivin, Josiah</name>
</author>
<id>https://hdl.handle.net/1721.1/165032</id>
<updated>2026-03-09T18:14:38Z</updated>
<published>2022-01-01T00:00:00Z</published>
<summary type="text">7.342 Synapse Remodeling in Health and Disease, Fall 2022
Ordonez, Dalila; Boivin, Josiah
Our brains are remarkably adaptable throughout our lives. Individual brain cells called neurons form synapses, sites of physical connection and communication between neurons, and then repeatedly rewire those connections in response to new experiences or to neuronal cell death caused by injury, disease, or aging. In this course, we will explore how neurons establish their synapses in the healthy brain during childhood and later in life, and how this process goes awry in disease states. More specifically, we will discuss how the brain forms its synapses early in life, stabilizes a subset of those synapses for long-term maintenance, and continues to add and remove synapses throughout life. We will then explore synapse dysfunction in diseases such as autism and Alzheimer’s disease, which involve abnormal increases or losses of synaptic connections, respectively. We will also consider synapse remodeling, a process of adding and removing synaptic connections to optimize our brain network, in the context of neuroinflammation, recovery from traumatic brain injury, and psychological trauma following prolonged stress.&#13;
&#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2022-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.342 How To Build An Animal: Cell Fate and Identity in Development and Disease, Fall 2017</title>
<link href="https://hdl.handle.net/1721.1/165031" rel="alternate"/>
<author>
<name>Blanton, Laura V</name>
</author>
<id>https://hdl.handle.net/1721.1/165031</id>
<updated>2026-03-09T18:14:04Z</updated>
<published>2017-01-01T00:00:00Z</published>
<summary type="text">7.342 How To Build An Animal: Cell Fate and Identity in Development and Disease, Fall 2017
Blanton, Laura V
In this course, we will explore how animals determine and maintain cell fate. We will discuss changes to DNA structure and packaging, special proteins (known as "master regulators") with the ability to alter cell fate via transcription, cell-cell signaling, and RNA localization.&#13;
&#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2017-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.341 DNA's Sister Does All the Work: The Central Roles of RNA in Gene Expression , Spring 2019</title>
<link href="https://hdl.handle.net/1721.1/165030" rel="alternate"/>
<author>
<name>Fiszbein, Ana</name>
</author>
<author>
<name>Jens, Marvin</name>
</author>
<id>https://hdl.handle.net/1721.1/165030</id>
<updated>2026-03-09T18:13:29Z</updated>
<published>2019-01-01T00:00:00Z</published>
<summary type="text">7.341 DNA's Sister Does All the Work: The Central Roles of RNA in Gene Expression , Spring 2019
Fiszbein, Ana; Jens, Marvin
This course will explore the current frontiers of the world of RNA biology with primary research papers to trace how the original odd detail sometimes leads to major discoveries. As we discuss the different transcripts and processing events that enable this exciting diversity of RNA functions, we invite you to read landmark papers with us, think critically, and ask new questions, as we marvel at the wonders of RNA.  &#13;
  &#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2019-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.341 The Microbiome and Drug Delivery: Cross-species Communication in Health and Disease, Spring 2018</title>
<link href="https://hdl.handle.net/1721.1/165029" rel="alternate"/>
<author>
<name>Beyzavi, Ali</name>
</author>
<author>
<name>Jimenez, Miguel</name>
</author>
<id>https://hdl.handle.net/1721.1/165029</id>
<updated>2026-03-09T18:12:34Z</updated>
<published>2018-01-01T00:00:00Z</published>
<summary type="text">7.341 The Microbiome and Drug Delivery: Cross-species Communication in Health and Disease, Spring 2018
Beyzavi, Ali; Jimenez, Miguel
There are more microbes permanently living in our gut than there are cells in the human body. This rich community of bacteria, fungi and viruses, called the microbiome, plays a central role in human health and disease. Recent research has linked this passenger community to nutrition, circadian rhythms, infectious disease, inflammatory disease, cancer, diabetes, arthritis and even immune system and nervous system development. How can we analyze such a complex system? Can we exploit the microbiome to improve human health? Can interactions with microbes be harnessed for drug delivery?&#13;
&#13;
In this course, we will learn to critically assess the primary scientific literature to find answers to these questions and learn to distinguish between correlation and causality. We will learn how mechanistic insights and emerging tools, such as synthetic biology and microfluidics, together are transforming microbiome research, and might lead to new types of therapeutics and drug delivery for improving human health.&#13;
&#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2018-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.341 Microbes at War: The Mechanisms That Drive Infectious Diseases, Fall 2022</title>
<link href="https://hdl.handle.net/1721.1/165028" rel="alternate"/>
<author>
<name>McLellan, Lisa</name>
</author>
<id>https://hdl.handle.net/1721.1/165028</id>
<updated>2026-03-09T18:11:52Z</updated>
<published>2022-01-01T00:00:00Z</published>
<summary type="text">7.341 Microbes at War: The Mechanisms That Drive Infectious Diseases, Fall 2022
McLellan, Lisa
How can a tick bite cause a meat allergy? And does cranberry juice do anything to help cure a urinary tract infection? To answer these and other questions, we are going to take a dive into the molecular world of microbes. In this class, we will use the primary research literature to explore the molecular interactions between pathogens and their hosts that allow microbes to cause infectious diseases. We will examine the factors that pathogens use to colonize a host and how the host response can impact the outcome of the infection. By the end of the class, students will have both developed critical scientific skills in evaluating scientific literature and an appreciation of the microbes influencing our lives and health every day.&#13;
&#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2022-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.341 Biomaterials and Devices for Disease Diagnosis and Therapy, Fall 2018</title>
<link href="https://hdl.handle.net/1721.1/165027" rel="alternate"/>
<author>
<name>McHugh, Kevin</name>
</author>
<author>
<name>Beyzavi, Ali</name>
</author>
<id>https://hdl.handle.net/1721.1/165027</id>
<updated>2026-03-09T18:11:08Z</updated>
<published>2018-01-01T00:00:00Z</published>
<summary type="text">7.341 Biomaterials and Devices for Disease Diagnosis and Therapy, Fall 2018
McHugh, Kevin; Beyzavi, Ali
Students will learn about the use of biomaterials to create advanced diagnostic tools for detection of infectious and chronic diseases, restore insulin production to supplement lost pancreatic function in diabetes, provide cells with appropriate physical, mechanical, and biochemical cues to direct tissue regeneration, and enhance the efficacy of cancer immunotherapy.&#13;
&#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2018-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.342 The Seeds and the Soil: Roles of Tumor Heterogeneity and the Tumor Microenvironment in Cancer Metastasis, Fall 2020</title>
<link href="https://hdl.handle.net/1721.1/165026" rel="alternate"/>
<author>
<name>Lambert, Arthur</name>
</author>
<author>
<name>Zhang, Yun</name>
</author>
<id>https://hdl.handle.net/1721.1/165026</id>
<updated>2026-03-09T18:09:46Z</updated>
<published>2020-01-01T00:00:00Z</published>
<summary type="text">7.342 The Seeds and the Soil: Roles of Tumor Heterogeneity and the Tumor Microenvironment in Cancer Metastasis, Fall 2020
Lambert, Arthur; Zhang, Yun
Metastatic disease is responsible for the vast majority of deaths associated with cancer, yet our understanding of how metastases arise is still developing. In this course, we will introduce various concepts and models that have been proposed to explain how cancer cells disseminate from a primary tumor to distant anatomical sites. We’ll learn about the critical factors that influence cancer metastasis frontiers through analysis and discussion of relevant primary research articles, with an emphasis on mechanisms of metastasis that can be applied across different cancer types. Students will gain a broad understanding of the field of cancer metastasis, including state-of-the-art techniques that are being used to address pressing questions in the field.&#13;
&#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2020-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.343 Microbial Megaproducers: Discovery, Biosynthesis, Engineering and Applications of Natural Products, Fall 2020</title>
<link href="https://hdl.handle.net/1721.1/165025" rel="alternate"/>
<author>
<name>Ulrich, Emily C</name>
</author>
<author>
<name>Hetrick, Kenton</name>
</author>
<id>https://hdl.handle.net/1721.1/165025</id>
<updated>2026-03-09T18:08:41Z</updated>
<published>2020-01-01T00:00:00Z</published>
<summary type="text">7.343 Microbial Megaproducers: Discovery, Biosynthesis, Engineering and Applications of Natural Products, Fall 2020
Ulrich, Emily C; Hetrick, Kenton
The natural world is a mega-factory of small molecules, peptides, fatty acids, phospholipids, and a host of other compounds, known as natural products (NPs). Immensely diverse in structure and function, NPs have strongly influenced how we treat infectious disease, cancer, pain, and a host of other conditions. Roughly half of the drugs that have been approved in the past 30 years are NPs, derivatives of NPs or NP-inspired. In this discussion-based course, we will delve into research on discovering NPs from producing organisms, investigating the biochemistry of NP production, and using synthetic biology to create NP derivatives—all with a particular emphasis on how genomic data guides and informs all these studies.&#13;
&#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2020-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.342 A Double-Edged Sword: Cellular Immunity in Health and Disease, Fall 2018</title>
<link href="https://hdl.handle.net/1721.1/165024" rel="alternate"/>
<author>
<name>Ma, Haiting</name>
</author>
<id>https://hdl.handle.net/1721.1/165024</id>
<updated>2026-03-09T18:09:08Z</updated>
<published>2018-01-01T00:00:00Z</published>
<summary type="text">7.342 A Double-Edged Sword: Cellular Immunity in Health and Disease, Fall 2018
Ma, Haiting
Immune cells protect our bodies from both self-derived threats and exogenous pathogens, while keeping peace with normal cells and non-harmful commensal microbiota. They have various mechanisms to perform these tasks, a capacity that is essential for maintaining homeostasis. However, these same mechanisms can backfire, resulting in severe disorders such as immunodeficiency, chronic inflammation, allergy, degenerative diseases, and cancer. This course discusses the connections between normal physiology and disease by examining the developmental relationship between innate and adaptive immune cells as well as the functions and malfunctions of immune cells. The course familiarizes students with both basic biological principles (such as cell death and immune cell signaling) and clinical applications (such as immune checkpoint blockade). More generally, students learn to identify relevant primary research literature, critically evaluate experimental data, and reach their own conclusions based on primary data.&#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2018-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Automated Flow Synthesis of Artificial Heme Enzymes for Enantiodivergent Biocatalysis</title>
<link href="https://hdl.handle.net/1721.1/165023" rel="alternate"/>
<author>
<name>Fittolani, Giulio</name>
</author>
<author>
<name>Kutateladze, Dennis A</name>
</author>
<author>
<name>Loas, Andrei</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<author>
<name>Pentelute, Bradley L</name>
</author>
<id>https://hdl.handle.net/1721.1/165023</id>
<updated>2026-03-05T06:13:21Z</updated>
<published>2025-01-22T00:00:00Z</published>
<summary type="text">Automated Flow Synthesis of Artificial Heme Enzymes for Enantiodivergent Biocatalysis
Fittolani, Giulio; Kutateladze, Dennis A; Loas, Andrei; Buchwald, Stephen L; Pentelute, Bradley L
The remarkable efficiency with which enzymes catalyze small-molecule reactions has driven their widespread application in organic chemistry. Here, we employ automated fast-flow solid-phase synthesis to access catalytically active full-length enzymes without restrictions on the number and structure of noncanonical amino acids incorporated. We demonstrate the total syntheses of iron-dependent Bacillus subtilis myoglobin (BsMb) and sperm whale myoglobin (SwMb). The synthetic enzymes displayed excellent enantioselectivity and yield in carbene transfer reactions. Absolute control over enantioselectivity in styrene cyclopropanation was achieved using synthetic L- and D-BsMb mutants, which delivered each enantiomer of cyclopropane product in identical and opposite enantiomeric enrichment. BsMb mutants outfitted with noncanonical amino acids were used to facilitate detailed structure–activity relationship studies, revealing a previously unrecognized hydrogen-bonding interaction as the primary driver of enantioselectivity in styrene cyclopropanation. We anticipate that our approach will advance biocatalysis by providing reliable and rapid access to fully synthetic enzymes possessing noncanonical amino acids.
</summary>
<dc:date>2025-01-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of a Ligand for Cu-Catalyzed Amination of Base-Sensitive (Hetero)aryl Chlorides</title>
<link href="https://hdl.handle.net/1721.1/165022" rel="alternate"/>
<author>
<name>Ai, Han-Jun</name>
</author>
<author>
<name>Mai, Binh Khanh</name>
</author>
<author>
<name>Liu, Cecilia</name>
</author>
<author>
<name>Liu, Peng</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<id>https://hdl.handle.net/1721.1/165022</id>
<updated>2026-03-05T06:13:11Z</updated>
<published>2025-10-13T00:00:00Z</published>
<summary type="text">Development of a Ligand for Cu-Catalyzed Amination of Base-Sensitive (Hetero)aryl Chlorides
Ai, Han-Jun; Mai, Binh Khanh; Liu, Cecilia; Liu, Peng; Buchwald, Stephen L
We report a new N1,N2-diarylbenzene-1,2-diamine ligand, L6, that supports a copper catalyst capable of coupling base-sensitive aryl chlorides and amines that were previously unsuccessful substrates for Cu-catalyzed C–N coupling. A detailed structure–activity relationship study, combined with density functional theory (DFT) calculations, was used to uncover two key structural features that contribute to the efficacy of the catalyst derived from L6. First, steric repulsion caused by a methyl substituent induces a conformational change that opens up additional space for ligand deprotonation and oxidative addition. Second, the trifluoromethyl groups create electrostatic interactions between the ligand and aryl chloride substrates that facilitate oxidative addition via through-space ligand–substrate interaction.
</summary>
<dc:date>2025-10-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ligand Design Enables Cu-Catalyzed Etherification of Aryl Bromides Using Mild Bases</title>
<link href="https://hdl.handle.net/1721.1/165021" rel="alternate"/>
<author>
<name>Strauss, Michael J</name>
</author>
<author>
<name>Greaves, Megan E</name>
</author>
<author>
<name>Kim, Seoung-Tae</name>
</author>
<author>
<name>Schmidt, Michael A</name>
</author>
<author>
<name>Scola, Paul M</name>
</author>
<author>
<name>Buchwald, Stephen L</name>
</author>
<id>https://hdl.handle.net/1721.1/165021</id>
<updated>2026-03-05T06:13:20Z</updated>
<published>2026-01-05T00:00:00Z</published>
<summary type="text">Ligand Design Enables Cu-Catalyzed Etherification of Aryl Bromides Using Mild Bases
Strauss, Michael J; Greaves, Megan E; Kim, Seoung-Tae; Schmidt, Michael A; Scola, Paul M; Buchwald, Stephen L
We report a Cu-catalyzed method for the efficient coupling of base-sensitive aryl bromides and alcohols utilizing a newly developed N1,N2-diarylbenzene-1,2-diamine ligand, L15. This ligand was developed to increase the Lewis acidity of the Cu center, thereby permitting the use of a substantially milder base (NaOTMS or NaOPh) relative to those required in a previous iteration of this methodology (NaOMe or NaOt-Bu). Under the optimized reaction conditions, several classes of previously incompatible aryl bromides were efficiently transformed, including base-sensitive heterocycles and those containing acidic functional groups. Kinetic analyses support that C–O coupling proceeds via a mechanism involving binding/deprotonation of alcohol nucleophiles, that the pKa of the base influences the overall rate law, and that substoichiometric quantities of strong base can be utilized to accelerate ligand activation and thereby increase the overall rate of the transformation.
</summary>
<dc:date>2026-01-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Time-Resolved Line Shapes of Single Quantum Emitters via Machine Learned Photon Correlations</title>
<link href="https://hdl.handle.net/1721.1/165020" rel="alternate"/>
<author>
<name>Proppe, Andrew H</name>
</author>
<author>
<name>Lee, Kin Long Kelvin</name>
</author>
<author>
<name>Kaplan, Alexander EK</name>
</author>
<author>
<name>Ginterseder, Matthias</name>
</author>
<author>
<name>Krajewska, Chantalle J</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<id>https://hdl.handle.net/1721.1/165020</id>
<updated>2026-03-05T06:13:24Z</updated>
<published>2023-08-04T00:00:00Z</published>
<summary type="text">Time-Resolved Line Shapes of Single Quantum Emitters via Machine Learned Photon Correlations
Proppe, Andrew H; Lee, Kin Long Kelvin; Kaplan, Alexander EK; Ginterseder, Matthias; Krajewska, Chantalle J; Bawendi, Moungi G
Solid-state single-photon emitters (SPEs) are quantum light sources that combine atomlike optical properties with solid-state integration and fabrication capabilities. SPEs are hindered by spectral diffusion, where the emitter's surrounding environment induces random energy fluctuations. Timescales of spectral diffusion span nanoseconds to minutes and require probing single emitters to remove ensemble averaging. Photon correlation Fourier spectroscopy (PCFS) can be used to measure time-resolved single emitter line shapes, but is hindered by poor signal-to-noise ratio in the measured correlation functions at early times due to low photon counts. Here, we develop a framework to simulate PCFS correlation functions directly from diffusing spectra that match well with experimental data for single colloidal quantum dots. We use these simulated datasets to train a deep ensemble autoencoder machine learning model that outputs accurate, noiseless, and probabilistic reconstructions of the noisy correlations. Using this model, we obtain reconstructed time-resolved single dot emission line shapes at timescales as low as 10 ns, which are otherwise completely obscured by noise. This enables PCFS to extract optical coherence times on the same timescales as Hong-Ou-Mandel two-photon interference, but with the advantage of providing spectral information in addition to estimates of photon indistinguishability. Our machine learning approach is broadly applicable to different photon correlation spectroscopy techniques and SPE systems, offering an enhanced tool for probing single emitter line shapes on previously inaccessible timescales.
</summary>
<dc:date>2023-08-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Uncovering temperature-dependent exciton-polariton relaxation mechanisms in hybrid organic-inorganic perovskites</title>
<link href="https://hdl.handle.net/1721.1/165019" rel="alternate"/>
<author>
<name>Laitz, Madeleine</name>
</author>
<author>
<name>Kaplan, Alexander EK</name>
</author>
<author>
<name>Deschamps, Jude</name>
</author>
<author>
<name>Barotov, Ulugbek</name>
</author>
<author>
<name>Proppe, Andrew H</name>
</author>
<author>
<name>García-Benito, Inés</name>
</author>
<author>
<name>Osherov, Anna</name>
</author>
<author>
<name>Grancini, Giulia</name>
</author>
<author>
<name>deQuilettes, Dane W</name>
</author>
<author>
<name>Nelson, Keith A</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<author>
<name>Bulović, Vladimir</name>
</author>
<id>https://hdl.handle.net/1721.1/165019</id>
<updated>2026-03-05T06:13:18Z</updated>
<published>2023-04-27T00:00:00Z</published>
<summary type="text">Uncovering temperature-dependent exciton-polariton relaxation mechanisms in hybrid organic-inorganic perovskites
Laitz, Madeleine; Kaplan, Alexander EK; Deschamps, Jude; Barotov, Ulugbek; Proppe, Andrew H; García-Benito, Inés; Osherov, Anna; Grancini, Giulia; deQuilettes, Dane W; Nelson, Keith A; Bawendi, Moungi G; Bulović, Vladimir
Hybrid perovskites have emerged as a promising material candidate for&#13;
exciton-polariton (polariton) optoelectronics. Thermodynamically, lowthreshold Bose-Einstein condensation requires efficient scattering to the&#13;
polariton energy dispersion minimum, and many applications demand precise&#13;
control of polariton interactions. Thus far, the primary mechanisms by which&#13;
polaritons relax in perovskites remains unclear. In this work, we perform&#13;
temperature-dependent measurements of polaritons in low-dimensional perovskite wedged microcavities achieving a Rabi splitting of _ΩRabi = 260 ±&#13;
5 meV. We change the Hopfield coefficients by moving the optical excitation&#13;
along the cavity wedge and thus tune the strength of the primary polariton&#13;
relaxation mechanisms in this material. We observe the polariton bottleneck&#13;
regime and show that it can be overcome by harnessing the interplay between&#13;
the different excitonic species whose corresponding dynamics are modified by&#13;
strong coupling. This work provides an understanding of polariton relaxation&#13;
in perovskites benefiting from efficient, material-specific relaxation pathways&#13;
and intracavity pumping schemes from thermally brightened excitonic&#13;
species.
Springer Science and Business Media LLC
</summary>
<dc:date>2023-04-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>ObsMode2021 Cycle 9 Go/No-Go Report for VLBI Capabilities</title>
<link href="https://hdl.handle.net/1721.1/165018" rel="alternate"/>
<author>
<name>Matthews, Lynn D.</name>
</author>
<author>
<name>Crew, Geoff</name>
</author>
<author>
<name>Goddi, Ciriaco</name>
</author>
<author>
<name>Marti-Vidal, Ivan</name>
</author>
<author>
<name>Titus, Mike</name>
</author>
<author>
<name>Fish, Vincent</name>
</author>
<author>
<name>Wagner, Jan</name>
</author>
<author>
<name>Rottmann, Helge</name>
</author>
<author>
<name>Pridiprihora, Yurii</name>
</author>
<author>
<name>Krichbaum, Thomas</name>
</author>
<author>
<name>Liu, Kuo</name>
</author>
<author>
<name>Kramer, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/165018</id>
<updated>2026-03-05T18:45:41Z</updated>
<published>2021-10-26T00:00:00Z</published>
<summary type="text">ObsMode2021 Cycle 9 Go/No-Go Report for VLBI Capabilities
Matthews, Lynn D.; Crew, Geoff; Goddi, Ciriaco; Marti-Vidal, Ivan; Titus, Mike; Fish, Vincent; Wagner, Jan; Rottmann, Helge; Pridiprihora, Yurii; Krichbaum, Thomas; Liu, Kuo; Kramer, Michael
We present a status summary of the primary Very Long Baseline Interferometry (VLBI) development efforts which are under consideration at ALMA as new offerings in Cycle 9. These activities are being carried out under the ALMA North America Development Project known as the ALMA Phasing Project Phase 2 (APP2). The two VLBI priorities previously identified for Cycle 9 by the ObsMode process are: (1) a submillimeter (Band 7) VLBI observing capability and (2) a prototype spectral line VLBI mode (in Band 3 only). This document provides an overview of the development, testing, and readiness of these capabilities. Updates on other APP2 development efforts of relevance for future cycles, including the phased-array mode offered for the first time in Cycle 8, are also provided.&#13;
Warning: This report contains material that is considered proprietary to the Event Horizon Telescope Collaboration (EHTC). These results may not be publicly posted, cited, or shared in any form. They are presented here with permission from EHTC Management solely for the purpose of allowing an evaluation of ALMA's performance as a VLBI station for 345 GHz (Band 7) VLBI. This report also contains ALMA EOC (test) data which are subject to ALMA's standard policies on the use of such data. We are working to ensure that the EHTC follows the ALMA guidelines (Carpenter et al., 2019) in the appropriate publication and release of data to allow follow-up work for science.
This report was prepared for the formal acceptance of the software required for Cycle 9.&#13;
Notionally it is ALMA Technical Note #23, but not published (yet) as such.
</summary>
<dc:date>2021-10-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Self-Directed, Home-Like XR System for Sustained Intangible Cultural Heritage Practice: An Ikebana Case Study</title>
<link href="https://hdl.handle.net/1721.1/165017" rel="alternate"/>
<author>
<name>Wu, Yu</name>
</author>
<author>
<name>Li, Manxueying</name>
</author>
<author>
<name>Mai, Gelei</name>
</author>
<id>https://hdl.handle.net/1721.1/165017</id>
<updated>2026-03-05T06:13:11Z</updated>
<published>2026-02-05T00:00:00Z</published>
<summary type="text">A Self-Directed, Home-Like XR System for Sustained Intangible Cultural Heritage Practice: An Ikebana Case Study
Wu, Yu; Li, Manxueying; Mai, Gelei
Sustained Intangible Cultural Heritage (ICH) practices for novices depend more on curiosity and creative agency than on procedural training. Yet, most extended reality (XR) systems for ICH emphasize guided instruction or exhibitions, limiting self-direction and continuity beyond the device. Using Ikebana as a case study, we present a self-directed, home-like virtual reality (VR) experience built with 3D Gaussian Splatting (3D GS) and natural hand tracking, complemented by an augmented reality (AR) revisiting feature that exports creations for real-world placement and sharing. In a study with 11 novices, pre-post questionnaires showed gains in interest, likelihood to continue offline, and understanding (p ≤.01). Interviews indicated that domestic realism reduced intimidation, natural gestures supported immersion, and AR revisiting extended reflection and engagement. We contribute (1) a home-like, self-directed XR design for ICH practice and (2) evidence that approachability, autonomy, and cross-reality continuity enhance motivation beyond the virtual world.
VRCAI ’25, Macau, China
</summary>
<dc:date>2026-02-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>CS Ed. in Prisons and Jails: Evidence of Computer Programming Self-Efficacy Growth Across Multiple Course Offerings</title>
<link href="https://hdl.handle.net/1721.1/165016" rel="alternate"/>
<author>
<name>Fishberg, Andrew</name>
</author>
<author>
<name>Gaetz, Marisa</name>
</author>
<author>
<name>Nisser, Martin</name>
</author>
<author>
<name>Cafferty, Carole</name>
</author>
<author>
<name>Perlman, Lee</name>
</author>
<author>
<name>Soicher, Raechel N.</name>
</author>
<author>
<name>Long, Joshua</name>
</author>
<id>https://hdl.handle.net/1721.1/165016</id>
<updated>2026-03-05T06:13:06Z</updated>
<published>2026-02-17T00:00:00Z</published>
<summary type="text">CS Ed. in Prisons and Jails: Evidence of Computer Programming Self-Efficacy Growth Across Multiple Course Offerings
Fishberg, Andrew; Gaetz, Marisa; Nisser, Martin; Cafferty, Carole; Perlman, Lee; Soicher, Raechel N.; Long, Joshua
Incarcerated students enrolled in education programs in prisons and jails experience a range of benefits, from reduced recidivism to improved psychosocial well-being. With respect to computer science education, little is still known about how courses impact incarcerated students' experiences, though recent work has explored fears and confidence of incarcerated students enrolled in computer science courses. Our work investigates incarcerated students' changes in self-efficacy over multiple iterations of four different classes. Our findings showed that all subscales of computer programming self-efficacy (algorithm, control, cooperation, debugging, and logic), but not generalized self-efficacy, were statistically significantly increased at the end of the courses relative to the beginning (p &lt; 0.001, n = 36). A similar pattern of results across the full sample (n = 188) adds additional support for the veracity of the effects found in the subset of paired data. Additionally, we share students' qualitative data to add nuance to our findings and emphasize the importance of these educational experiences for incarcerated students' personal and professional development.
</summary>
<dc:date>2026-02-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>HyProf: A Profiler for Programming Students that Offers Hypotheses about Performance Bugs</title>
<link href="https://hdl.handle.net/1721.1/165015" rel="alternate"/>
<author>
<name>Dargan, Hope</name>
</author>
<author>
<name>Hartz, Adam</name>
</author>
<author>
<name>Miller, Robert</name>
</author>
<id>https://hdl.handle.net/1721.1/165015</id>
<updated>2026-03-05T06:13:25Z</updated>
<published>2026-02-17T00:00:00Z</published>
<summary type="text">HyProf: A Profiler for Programming Students that Offers Hypotheses about Performance Bugs
Dargan, Hope; Hartz, Adam; Miller, Robert
Programming students often struggle to find and fix performance bugs in their code. To provide students additional performance debugging support, as well as expose them to profiling tools, we developed Hypothesis Profiler (HyProf). HyProf automatically profiles a slow student submission and produces a profile visualization suitable for learners. In addition to showing individual function and line times, HyProf shows details about the call graph, lines that made recursive calls or did not execute, and hypotheses about possible causes of slow performance, formulated by comparing the slow profile against fast submissions from other students. We deployed HyProf in a 400-student Python course and evaluated it through web logs, office hour observations, and surveys, which showed that 75% of respondents successfully used HyProf to find or fix a performance issue and 85% would recommend it to others.
SIGCSE TS 2026, St. Louis, MO, USA
</summary>
<dc:date>2026-02-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>KANELÉ: Kolmogorov–Arnold Networks for Efficient LUT-based Evaluation</title>
<link href="https://hdl.handle.net/1721.1/165014" rel="alternate"/>
<author>
<name>Hoang, Duc</name>
</author>
<author>
<name>Gupta, Aarush</name>
</author>
<author>
<name>Harris, Philip C</name>
</author>
<id>https://hdl.handle.net/1721.1/165014</id>
<updated>2026-03-05T06:13:27Z</updated>
<published>2026-02-21T00:00:00Z</published>
<summary type="text">KANELÉ: Kolmogorov–Arnold Networks for Efficient LUT-based Evaluation
Hoang, Duc; Gupta, Aarush; Harris, Philip C
Low-latency, resource-efficient neural network inference on FPGAs is essential for applications demanding real-time capability and low power. Lookup table (LUT)-based neural networks are a common solution, combining strong representational power with efficient FPGA implementation. In this work, we introduce KANELÉ, a framework that exploits the unique properties of Kolmogorov–Arnold Networks (KANs) for FPGA deployment. Unlike traditional multilayer perceptrons (MLPs), KANs employ learnable one-dimensional splines with fixed domains as edge activations, a structure naturally suited to discretization and efficient LUT mapping. We present the first systematic design flow for implementing KANs on FPGAs, co-optimizing training with quantization and pruning to enable compact, high-throughput, and low-latency KAN architectures. Our results demonstrate up to a 2700x speedup and orders of magnitude resource savings compared to prior KAN-on-FPGA approaches. Moreover, KANELÉ matches or surpasses other LUT-based architectures on widely used benchmarks, particularly for tasks involving symbolic or physical formulas, while balancing resource usage across FPGA hardware. Finally, we showcase the versatility of the framework by extending it to real-time, power-efficient control systems.
FPGA ’26, Seaside, CA, USA
</summary>
<dc:date>2026-02-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>AI Séance: Recounts from designing artificial intelligence for transcendence, interpretive lenses and chance</title>
<link href="https://hdl.handle.net/1721.1/165013" rel="alternate"/>
<author>
<name>Schroeder, Hope</name>
</author>
<author>
<name>Smith, Amy</name>
</author>
<author>
<name>Epstein, Ziv</name>
</author>
<id>https://hdl.handle.net/1721.1/165013</id>
<updated>2026-03-05T06:13:22Z</updated>
<published>2025-07-17T00:00:00Z</published>
<summary type="text">AI Séance: Recounts from designing artificial intelligence for transcendence, interpretive lenses and chance
Schroeder, Hope; Smith, Amy; Epstein, Ziv
As AI becomes a prism through which we reflect, see, and make sense of the world, the way we create creative, transcendent experiences around AI can shape our relationship to it. Drawing inspiration from the ritual structures of Spiritualist séances and creative art-making séances of Hilma af Klint, we present reflections from a series of participatory experiments we called AI Séances. These gatherings brought together artists, technologists, and spiritual practitioners to engage with generative models in contexts shaped by ritual, randomness, and collaborative interpretation. We found that creative production with AI can yield transcendent user experiences (TUX), different communities bring distinct interpretive lenses to AI outputs, and increased technical control can paradoxically diminish serendipity and transcendence. Through our experiences, we suggest that reclaiming interpretive agency over AI outputs in the creative and spiritual context, rather than treating models as machines that produce answers, opens up new avenues for critical and creative engagement with these technologies and is critical to preserving our humanity. The AI Séance offers a model for human-centered interaction with generative systems where magic lies not in the machine’s capabilities, but in our collective ability to create meaning.
</summary>
<dc:date>2025-07-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>2.008 Design and Manufacturing II, Spring 2003</title>
<link href="https://hdl.handle.net/1721.1/165012" rel="alternate"/>
<author>
<name>Dow, David</name>
</author>
<author>
<name>Sachs, Emanuel</name>
</author>
<author>
<name>Chun, Jung-Hoon</name>
</author>
<author>
<name>McAtamney, Patrick</name>
</author>
<author>
<name>Sarma, Sanjay</name>
</author>
<id>https://hdl.handle.net/1721.1/165012</id>
<updated>2026-03-04T18:04:45Z</updated>
<published>2003-01-01T00:00:00Z</published>
<summary type="text">2.008 Design and Manufacturing II, Spring 2003
Dow, David; Sachs, Emanuel; Chun, Jung-Hoon; McAtamney, Patrick; Sarma, Sanjay
Integration of design, engineering, and management disciplines and practices for analysis and design of manufacturing enterprises. Emphasis is on the physics and stochastic nature of manufacturing processes and systems, and their effects on quality, rate, cost, and flexibility. Topics include process physics and control, design for manufacturing, and manufacturing systems. Group project requires design and fabrication of parts using mass-production and assembly methods to produce a product in quantity.
</summary>
<dc:date>2003-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>2.008 Design and Manufacturing II, Spring 2004</title>
<link href="https://hdl.handle.net/1721.1/165011" rel="alternate"/>
<author>
<name>Chun, Jung-Hoon</name>
</author>
<author>
<name>Kim, Sang-Gook</name>
</author>
<id>https://hdl.handle.net/1721.1/165011</id>
<updated>2026-03-04T18:05:26Z</updated>
<published>2004-01-01T00:00:00Z</published>
<summary type="text">2.008 Design and Manufacturing II, Spring 2004
Chun, Jung-Hoon; Kim, Sang-Gook
This course introduces you to modern manufacturing with four areas of emphasis: manufacturing processes, equipment/control, systems, and design for manufacturing. The course exposes you to integration of engineering and management disciplines for determining manufacturing rate, cost, quality and flexibility. Topics include process physics, equipment design and automation/control, quality, design for manufacturing, industrial management, and systems design and operation. Labs are integral parts of the course, and expose you to various manufacturing disciplines and practices.
</summary>
<dc:date>2004-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>NeuSE: Neural SE(3)-equivariant embedding for long-term object-based simultaneous localization and mapping</title>
<link href="https://hdl.handle.net/1721.1/165010" rel="alternate"/>
<author>
<name>Fu, Jiahui</name>
</author>
<author>
<name>Du, Yilun</name>
</author>
<author>
<name>Singh, Kurran</name>
</author>
<author>
<name>Tenenbaum, Joshua B</name>
</author>
<author>
<name>Leonard, John J</name>
</author>
<id>https://hdl.handle.net/1721.1/165010</id>
<updated>2026-03-05T06:13:16Z</updated>
<published>2026-01-01T00:00:00Z</published>
<summary type="text">NeuSE: Neural SE(3)-equivariant embedding for long-term object-based simultaneous localization and mapping
Fu, Jiahui; Du, Yilun; Singh, Kurran; Tenenbaum, Joshua B; Leonard, John J
We present NeuSE, a novel Neural SE(3)-Equivariant Embedding for objects, and illustrate how it supports object-based Simultaneous Localization and Mapping (SLAM) for consistent spatial understanding with long-term scene changes. NeuSE is a set of latent object embeddings created from partial object observations. It serves as a compact point cloud surrogate for complete object models, encoding the full shape, scale, and transform information about an object. In addition, the inferred latent code is both SE(3) and scale equivariant, enabling strong generalization to objects of both unseen sizes and different SE(3) poses. This makes NeuSE particularly effective in real-world scenarios where objects may vary in size or spatial configuration. With NeuSE, relative frame transforms can be directly derived from inferred latent codes. Our proposed SLAM paradigm, using NeuSE for object shape, size, and pose characterization, can operate independently or in conjunction with typical SLAM systems. It directly infers SE(3) camera pose constraints that are compatible with general SLAM pose graph optimization, while maintaining a lightweight, object-centric map that adapts to real-world changes. Our evaluation is conducted on synthetic and real-world sequences with changes in both controlled and uncontrolled settings, featuring multi-category objects of various shapes and sizes. Our approach demonstrates improved localization capability and change-aware mapping consistency when working either independently or as a complement to common SLAM pipelines.
</summary>
<dc:date>2026-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>TravelAgent: Generative agents in the built environment</title>
<link href="https://hdl.handle.net/1721.1/165008" rel="alternate"/>
<author>
<name>Noyman, Ariel</name>
</author>
<author>
<name>Hu, Kai</name>
</author>
<author>
<name>Larson, Kent</name>
</author>
<id>https://hdl.handle.net/1721.1/165008</id>
<updated>2026-03-05T06:13:07Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">TravelAgent: Generative agents in the built environment
Noyman, Ariel; Hu, Kai; Larson, Kent
Understanding human behavior in the built environment is critical for designing highly-functional, human-centered urban spaces. Traditional approaches, such as manual observations, surveys, and simple simulations, often struggle to capture the complexity and nuance of real-world human behavior and experience. Here we introduce TravelAgent, a novel agentic simulation platform that models pedestrian navigation, activity, and human-like decision-making in the built environment. TravelAgent is proposed to help design teams and decision-makers understand how different users might experience diverse built environments under varying environmental conditions. TravelAgent integrates Generative Agents, multi-modal sensory inputs, and virtual environments, enabling agents to perceive, navigate, and interact with their surroundings, with tasks ranging from goal-oriented navigation to free exploration. We share analysis from 200 simulations with 3364 decision points and task completion rate of ∼80%, across diverse spatial layouts and agent archetypes. We present spatial, linguistic, and sentiment analysis, and show how agents react and experience their surroundings. Finally, we suggest TravelAgent as a new paradigm for designing, simulating, and understanding human experiences in urban environments.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cleaning a dark matter detector: A case of ontological and normative elusiveness</title>
<link href="https://hdl.handle.net/1721.1/165007" rel="alternate"/>
<author>
<name>de Swart, Jaco</name>
</author>
<author>
<name>Mol, Annemarie</name>
</author>
<id>https://hdl.handle.net/1721.1/165007</id>
<updated>2026-03-05T06:13:29Z</updated>
<published>2025-08-30T00:00:00Z</published>
<summary type="text">Cleaning a dark matter detector: A case of ontological and normative elusiveness
de Swart, Jaco; Mol, Annemarie
Laboratory sciences crucially depend on the cleanliness of experiments. But what is clean? In this article, we show that the salience of the valuation clean emerges through its relation to a particular ontological repertoire. Our case is the XENONnT experiment in the Gran Sasso Mountains of Italy, designed to detect dark matter in the form of hypothetical WIMPs (Weakly Interacting Massive Particles). In this experiment, dirt presents a significant disruption, as contaminations can mimic the signals of WIMPs, and electronegative molecules risk erasing such signals. The ideosyncratic cleanliness required makes the practice of cleaning the XENONnT detector exceedingly difficult. So far, the ontological question ‘do WIMPs exist?’ remains open, which means that the normative question ‘is the detector clean enough?’ cannot be answered either. In addition, more cleaning will make the detector sensitive to a background of unremovable neutrinos—hence irredeemably dirty. With the normative goal of a ‘clean detector’ out of reach, the ontological question ‘do WIMPs exist?’ is bound to remain open as well. Alternative experiments therefore hunt for different hypothetical dark matter candidates, with different equipment, requiring different kinds of cleanliness. At the same time, the XENONnT experiment must navigate tensions between its own cleanliness goals and rules meant to ensure the environmental cleanliness of the Gran Sasso National Park. Cleaning turns out to be dirty. This leads us to ask: Which goods deserve to be cherished, and, intertwined with that, which realities deserve to be cared for?
</summary>
<dc:date>2025-08-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multi-fidelity reinforcement learning for time-optimal quadrotor re-planning</title>
<link href="https://hdl.handle.net/1721.1/165006" rel="alternate"/>
<author>
<name>Ryou, Gilhyun</name>
</author>
<author>
<name>Wang, Geoffrey</name>
</author>
<author>
<name>Karaman, Sertac</name>
</author>
<id>https://hdl.handle.net/1721.1/165006</id>
<updated>2026-03-05T06:12:59Z</updated>
<published>2025-08-22T00:00:00Z</published>
<summary type="text">Multi-fidelity reinforcement learning for time-optimal quadrotor re-planning
Ryou, Gilhyun; Wang, Geoffrey; Karaman, Sertac
High-speed online trajectory planning for UAVs poses a significant challenge due to the need for precise modeling of complex dynamics while also being constrained by computational limitations. This paper presents a multi-fidelity reinforcement learning method (MFRL) that aims to effectively create a realistic dynamics model and simultaneously train a planning policy that can be readily deployed in real-time applications. The proposed method involves the co-training of a planning policy and a reward estimator; the latter predicts the performance of the policy’s output and is trained efficiently through multi-fidelity Bayesian optimization. This optimization approach models the correlation between different fidelity levels, thereby constructing a high-fidelity model based on a low-fidelity foundation, which enables the accurate development of the reward model with limited high-fidelity experiments. The framework is further extended to include real-world flight experiments in reinforcement learning training, allowing the reward model to precisely reflect real-world constraints and broadening the policy’s applicability to real-world scenarios. We present rigorous evaluations by training and testing the planning policy in both simulated and real-world environments. The resulting trained policy not only generates faster and more reliable trajectories compared to the baseline snap minimization method, but it also achieves trajectory updates in 2 ms on average, while the baseline method takes several minutes.
</summary>
<dc:date>2025-08-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Designing Distribution Network Tariffs in the US with an Application to Increased Electric Vehicle Adoption</title>
<link href="https://hdl.handle.net/1721.1/165005" rel="alternate"/>
<author>
<name>Turk, Graham</name>
</author>
<author>
<name>Schittekatte, Tim</name>
</author>
<author>
<name>Duenas-Martinez, Pablo</name>
</author>
<author>
<name>Joskow, Paul L</name>
</author>
<author>
<name>Schmalensee, Richard</name>
</author>
<id>https://hdl.handle.net/1721.1/165005</id>
<updated>2026-03-05T06:13:23Z</updated>
<published>2025-11-01T00:00:00Z</published>
<summary type="text">Designing Distribution Network Tariffs in the US with an Application to Increased Electric Vehicle Adoption
Turk, Graham; Schittekatte, Tim; Duenas-Martinez, Pablo; Joskow, Paul L; Schmalensee, Richard
Time-of-use (TOU) tariffs that vary the cost per kWh to reflect wide variations in generation and wholesale market costs give incentives to shift all electric vehicle (EV) charging to low-price periods. As EV penetration increases, such tariffs would substantially raise the local kW demand in those low-priced periods, which eventually would lead to increasing network expansion costs. A straightforward way to mitigate this problem is to separate energy charges from network charges, with appropriate rate designs for each. This paper uses a realistic case study to investigate the implications of combining TOU energy charges with various network tariff designs in the face of increased EV penetration. Our results provide support for the adoption in the US of ex-ante subscribed capacity tariffs (subscription charges), which give consumers incentives to reduce their peak kW demands. Reducing costs of EV ownership (a priority for many US states) need not be pursued at the expense of broader affordability goals.&#13;
&#13;
JEL classification: L51, L94, L97, Q41, D40
</summary>
<dc:date>2025-11-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Geopolitical ecologies of cloud capitalism: Territorial restructuring and the making of national computing power in the U.S. and China</title>
<link href="https://hdl.handle.net/1721.1/165004" rel="alternate"/>
<author>
<name>Kollar, Justin</name>
</author>
<author>
<name>Stokols, Andrew</name>
</author>
<id>https://hdl.handle.net/1721.1/165004</id>
<updated>2026-03-05T06:13:28Z</updated>
<published>2025-09-15T00:00:00Z</published>
<summary type="text">Geopolitical ecologies of cloud capitalism: Territorial restructuring and the making of national computing power in the U.S. and China
Kollar, Justin; Stokols, Andrew
As computing power becomes central to geopolitical rivalry, cloud infrastructure is increasingly framed as critical to national security, economic resilience and technological sovereignty. Current debates often focus on global competition – especially between the U.S. and China – highlighting strategic investments, export controls and infrastructure diplomacy abroad. Yet far less attention has been paid to the domestic territorial transformations that make such geopolitical projection possible. This paper argues that national strategies for AI and cloud dominance depend on the reorganization of land, energy and regulatory systems to sustain large-scale computation. Using a geopolitical ecology framework, we examine how the U.S. and China build national computing power as a strategic economic and military resource. In the U.S., cloud firms operate as state-aligned actors, drawing on fragmented regulatory authority, public subsidies and national security discourse to expand into rural and peri-urban regions. China pursues a more centralized strategy through its East Data, West Computing initiative, redistributing infrastructure to inland provinces under state-led development goals. Through comparative regional analysis, we show how domestic infrastructural expansion underpins geopolitical rivalry, producing new forms of territorial governance and socio-environmental inequality. Far from immaterial, the cloud is grounded in enclosure, extraction and the spatial foundations of techno-industrial power.
</summary>
<dc:date>2025-09-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Unlikely Organizers: The Rise of Tech Worker Labor Activism</title>
<link href="https://hdl.handle.net/1721.1/165003" rel="alternate"/>
<author>
<name>Tan, JS</name>
</author>
<author>
<name>Luka, Natalia</name>
</author>
<author>
<name>Mazo, Emily</name>
</author>
<id>https://hdl.handle.net/1721.1/165003</id>
<updated>2026-03-05T06:13:09Z</updated>
<published>2025-10-09T00:00:00Z</published>
<summary type="text">Unlikely Organizers: The Rise of Tech Worker Labor Activism
Tan, JS; Luka, Natalia; Mazo, Emily
Tech workers—professionals in the technology industry, such as software engineers, product managers, and UX designers—are not normally associated with labor activism. Yet, since 2017, there has been a significant rise in workplace activism over “bread-and-butter” issues among this group. Using an original data set, the authors demonstrate how, in the case of tech workers, periods of intense workplace social activism preceded later periods of heightened labor activism. Regression analysis confirms that participation in social activism increases the likelihood of labor activism six months to one year later at the same company. Extending Rick Fantasia’s cultures of solidarity to professional workers, the authors highlight a new mechanism by which professionals engage in labor organizing: First, tech workers, guided by their professional interest in socially beneficial work, engage in workplace social activism. This action generates solidarity among employee-participants but also creates conflict with management and leads to the emergence of labor activism among professionals.
</summary>
<dc:date>2025-10-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fast detection of liver fibrosis with collagen-binding single-nanometer iron oxide nanoparticles via T1-weighted MRI</title>
<link href="https://hdl.handle.net/1721.1/165002" rel="alternate"/>
<author>
<name>Zhang, Juanye</name>
</author>
<author>
<name>Ning, Yingying</name>
</author>
<author>
<name>Zhu, Hua</name>
</author>
<author>
<name>Rotile, Nicholas J</name>
</author>
<author>
<name>Wei, He</name>
</author>
<author>
<name>Diyabalanage, Himashinie</name>
</author>
<author>
<name>Hansen, Eric C</name>
</author>
<author>
<name>Zhou, Iris Y</name>
</author>
<author>
<name>Barrett, Stephen C</name>
</author>
<author>
<name>Sojoodi, Mozhdeh</name>
</author>
<author>
<name>Tanabe, Kenneth K</name>
</author>
<author>
<name>Humblet, Valerie</name>
</author>
<author>
<name>Jasanoff, Alan</name>
</author>
<author>
<name>Caravan, Peter</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<id>https://hdl.handle.net/1721.1/165002</id>
<updated>2026-04-23T03:15:51Z</updated>
<published>2023-04-24T00:00:00Z</published>
<summary type="text">Fast detection of liver fibrosis with collagen-binding single-nanometer iron oxide nanoparticles via T1-weighted MRI
Zhang, Juanye; Ning, Yingying; Zhu, Hua; Rotile, Nicholas J; Wei, He; Diyabalanage, Himashinie; Hansen, Eric C; Zhou, Iris Y; Barrett, Stephen C; Sojoodi, Mozhdeh; Tanabe, Kenneth K; Humblet, Valerie; Jasanoff, Alan; Caravan, Peter; Bawendi, Moungi G
SNIO–CBP, a single-nanometer iron oxide (SNIO) nanoparticle functionalized with a type I collagen-binding peptide (CBP), was developed as a T1-weighted MRI contrast agent with only endogenous elements for fast and noninvasive detection of liver fibrosis. SNIO–CBP exhibits 6.7-fold higher relaxivity compared to a molecular gadolinium-based collagen-binding contrast agent CM-101 on a per CBP basis at 4.7 T. Unlike most iron oxide nanoparticles, SNIO–CBP exhibits fast elimination from the bloodstream with a 5.7 min half-life, high renal clearance, and low, transient liver enhancement in healthy mice. We show that a dose of SNIO–CBP that is 2.5-fold lower than that for CM-101 has comparable imaging efficacy in rapid (within 15 min following intravenous injection) detection of hepatotoxin-induced liver fibrosis using T1-weighted MRI in a carbon tetrachloride–induced mouse liver injury model. We further demonstrate the applicability of SNIO–CBP in detecting liver fibrosis in choline-deficient L-amino acid-defined high-fat diet mouse model of nonalcoholic steatohepatitis. These results provide a platform with potential for the development of high relaxivity, gadolinium-free molecular MRI probes for characterizing chronic liver disease.
</summary>
<dc:date>2023-04-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantum Shell in a Shell: Engineering Colloidal Nanocrystals for a High-Intensity Excitation Regime</title>
<link href="https://hdl.handle.net/1721.1/165001" rel="alternate"/>
<author>
<name>Harankahage, Dulanjan</name>
</author>
<author>
<name>Cassidy, James</name>
</author>
<author>
<name>Beavon, Jacob</name>
</author>
<author>
<name>Huang, Jiamin</name>
</author>
<author>
<name>Brown, Niamh</name>
</author>
<author>
<name>Berkinsky, David B</name>
</author>
<author>
<name>Marder, Andrew</name>
</author>
<author>
<name>Kayira, Barbra</name>
</author>
<author>
<name>Montemurri, Michael</name>
</author>
<author>
<name>Anzenbacher, Pavel</name>
</author>
<author>
<name>Schaller, Richard D</name>
</author>
<author>
<name>Sun, Liangfeng</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<author>
<name>Malko, Anton V</name>
</author>
<author>
<name>Diroll, Benjamin T</name>
</author>
<author>
<name>Zamkov, Mikhail</name>
</author>
<id>https://hdl.handle.net/1721.1/165001</id>
<updated>2026-05-08T03:14:26Z</updated>
<published>2023-06-06T00:00:00Z</published>
<summary type="text">Quantum Shell in a Shell: Engineering Colloidal Nanocrystals for a High-Intensity Excitation Regime
Harankahage, Dulanjan; Cassidy, James; Beavon, Jacob; Huang, Jiamin; Brown, Niamh; Berkinsky, David B; Marder, Andrew; Kayira, Barbra; Montemurri, Michael; Anzenbacher, Pavel; Schaller, Richard D; Sun, Liangfeng; Bawendi, Moungi G; Malko, Anton V; Diroll, Benjamin T; Zamkov, Mikhail
Many optoelectronic processes in colloidal semiconductor nanocrystals (NCs) suffer an efficiency decline under high-intensity excitation. This issue is caused by Auger recombination of multiple excitons, which converts the NC energy into excess heat, reducing the efficiency and life span of NC-based devices, including photodetectors, X-ray scintillators, lasers, and high-brightness light-emitting diodes (LEDs). Recently, semiconductor quantum shells (QSs) have emerged as a promising NC geometry for the suppression of Auger decay; however, their optoelectronic performance has been hindered by surface-related carrier losses. Here, we address this issue by introducing quantum shells with a CdS-CdSe-CdS-ZnS core-shell-shell-shell multilayer structure. The ZnS barrier inhibits the surface carrier decay, which increases the photoluminescence (PL) quantum yield (QY) to 90% while retaining a high biexciton emission QY of 79%. The improved QS morphology allows demonstrating one of the longest Auger lifetimes reported for colloidal NCs to date. The reduction of nonradiative losses in QSs also leads to suppressed blinking in single nanoparticles and low-threshold amplified spontaneous emission. We expect that ZnS-encapsulated quantum shells will benefit many applications exploiting high-power optical or electrical excitation regimes.
</summary>
<dc:date>2023-06-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Synthesis of Zwitterionic CsPbBr3 Nanocrystals with Controlled Anisotropy using Surface-Selective Ligand Pairs</title>
<link href="https://hdl.handle.net/1721.1/165000" rel="alternate"/>
<author>
<name>Zhu, Hua</name>
</author>
<author>
<name>Kick, Matthias</name>
</author>
<author>
<name>Ginterseder, Matthias</name>
</author>
<author>
<name>Krajewska, Chantalle J</name>
</author>
<author>
<name>Šverko, Tara</name>
</author>
<author>
<name>Li, Ruipeng</name>
</author>
<author>
<name>Lu, Yongli</name>
</author>
<author>
<name>Shih, Meng‐Chen</name>
</author>
<author>
<name>Van Voorhis, Troy</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<id>https://hdl.handle.net/1721.1/165000</id>
<updated>2026-05-08T03:12:32Z</updated>
<published>2023-07-24T00:00:00Z</published>
<summary type="text">Synthesis of Zwitterionic CsPbBr3 Nanocrystals with Controlled Anisotropy using Surface-Selective Ligand Pairs
Zhu, Hua; Kick, Matthias; Ginterseder, Matthias; Krajewska, Chantalle J; Šverko, Tara; Li, Ruipeng; Lu, Yongli; Shih, Meng‐Chen; Van Voorhis, Troy; Bawendi, Moungi G
Mechanistic studies of the morphology of lead halide perovskite nanocrystals (LHP‐NCs) are hampered by a lack of generalizable suitable synthetic strategies and ligand systems. Here, the synthesis of zwitterionic CsPbBr&lt;jats:sub&gt;3&lt;/jats:sub&gt; NCs is presented with controlled anisotropy using a proposed “surface‐selective ligand pairs” strategy. Such a strategy provides a platform to systematically study the binding affinity of capping ligand pairs and the resulting LHP morphologies. By using zwitterionic ligands (ZwL) with varying structures, majority ZwL‐capped LHP NCs with controlled morphology are obtained, including anisotropic nanoplatelets and nanorods, for the first time. Combining experiments with density functional theory calculations, factors that govern the ligand binding on the different surface facets of LHP‐NCs are revealed, including the steric bulkiness of the ligand, the number of binding sites, and the charge distance between binding moieties. This study provides guidance for the further exploration of anisotropic LHP‐NCs.
</summary>
<dc:date>2023-07-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Theory of Photoluminescence Spectral Line Shapes of Semiconductor Nanocrystals</title>
<link href="https://hdl.handle.net/1721.1/164999" rel="alternate"/>
<author>
<name>Lin, Kailai</name>
</author>
<author>
<name>Jasrasaria, Dipti</name>
</author>
<author>
<name>Yoo, Jason J</name>
</author>
<author>
<name>Bawendi, Moungi</name>
</author>
<author>
<name>Utzat, Hendrik</name>
</author>
<author>
<name>Rabani, Eran</name>
</author>
<id>https://hdl.handle.net/1721.1/164999</id>
<updated>2026-05-08T03:12:50Z</updated>
<published>2023-08-08T00:00:00Z</published>
<summary type="text">Theory of Photoluminescence Spectral Line Shapes of Semiconductor Nanocrystals
Lin, Kailai; Jasrasaria, Dipti; Yoo, Jason J; Bawendi, Moungi; Utzat, Hendrik; Rabani, Eran
Single-molecule photoluminescence (PL) spectroscopy of semiconductor nanocrystals (NCs) reveals the nature of exciton-phonon interactions in NCs. Understanding the homogeneous spectral line shapes and their temperature dependence remains an open problem. Here, we develop an atomistic model to describe the PL spectrum of NCs, accounting for excitonic effects, phonon dispersion relations, and exciton-phonon couplings. We validate our model using single-NC measurements on CdSe/CdS NCs from &lt;i&gt;T&lt;/i&gt; = 4 to 290 K, and we find that the slightly asymmetric main peak at low temperatures is comprised of a narrow zero-phonon line (ZPL) and acoustic phonon sidebands. Furthermore, we identify the specific phonon modes that give rise to the optical phonon sidebands. At temperatures above 200 K, the spectral line width shows a stronger dependence upon the temperature, which we demonstrate to be correlated with higher order exciton-phonon couplings. We also identify the line width dependence upon reorganization energy, NC core sizes, and shell thicknesses.
</summary>
<dc:date>2023-08-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ultrafast dense DNA functionalization of quantum dots and rods for scalable 2D array fabrication with nanoscale precision</title>
<link href="https://hdl.handle.net/1721.1/164998" rel="alternate"/>
<author>
<name>Chen, Chi</name>
</author>
<author>
<name>Luo, Xin</name>
</author>
<author>
<name>Kaplan, Alexander EK</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<author>
<name>Macfarlane, Robert J</name>
</author>
<author>
<name>Bathe, Mark</name>
</author>
<id>https://hdl.handle.net/1721.1/164998</id>
<updated>2026-05-08T03:13:52Z</updated>
<published>2023-08-11T00:00:00Z</published>
<summary type="text">Ultrafast dense DNA functionalization of quantum dots and rods for scalable 2D array fabrication with nanoscale precision
Chen, Chi; Luo, Xin; Kaplan, Alexander EK; Bawendi, Moungi G; Macfarlane, Robert J; Bathe, Mark
Scalable fabrication of two-dimensional (2D) arrays of quantum dots (QDs) and quantum rods (QRs) with nanoscale precision is required for numerous device applications. However, self-assembly–based fabrication of such arrays using DNA origami typically suffers from low yield due to inefficient QD and QR DNA functionalization. In addition, it is challenging to organize solution-assembled DNA origami arrays on 2D device substrates while maintaining their structural fidelity. Here, we reduced manufacturing time from a few days to a few minutes by preparing high-density DNA-conjugated QDs/QRs from organic solution using a dehydration and rehydration process. We used a surface-assisted large-scale assembly (SALSA) method to construct 2D origami lattices directly on solid substrates to template QD and QR 2D arrays with orientational control, with overall loading yields exceeding 90%. Our fabrication approach enables the scalable, high fidelity manufacturing of 2D addressable QDs and QRs with nanoscale orientational and spacing control for functional 2D photonic devices.
</summary>
<dc:date>2023-08-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rational Design of a Chemical Bath Deposition Based Tin Oxide Electron‐Transport Layer for Perovskite Photovoltaics</title>
<link href="https://hdl.handle.net/1721.1/164997" rel="alternate"/>
<author>
<name>Lu, Yongli</name>
</author>
<author>
<name>Shih, Meng‐Chen</name>
</author>
<author>
<name>Tan, Shaun</name>
</author>
<author>
<name>Grotevent, Matthias J</name>
</author>
<author>
<name>Wang, Lili</name>
</author>
<author>
<name>Zhu, Hua</name>
</author>
<author>
<name>Zhang, Ruiqi</name>
</author>
<author>
<name>Lee, Joo‐Hong</name>
</author>
<author>
<name>Lee, Jin‐Wook</name>
</author>
<author>
<name>Bulović, Vladimir</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<id>https://hdl.handle.net/1721.1/164997</id>
<updated>2026-03-25T03:16:31Z</updated>
<published>2023-07-18T00:00:00Z</published>
<summary type="text">Rational Design of a Chemical Bath Deposition Based Tin Oxide Electron‐Transport Layer for Perovskite Photovoltaics
Lu, Yongli; Shih, Meng‐Chen; Tan, Shaun; Grotevent, Matthias J; Wang, Lili; Zhu, Hua; Zhang, Ruiqi; Lee, Joo‐Hong; Lee, Jin‐Wook; Bulović, Vladimir; Bawendi, Moungi G
Chemical bath deposition (CBD) is widely used to deposit tin oxide (SnOx) as an electron-transport layer in perovskite solar cells (PSCs). The conventional recipe uses thioglycolic acid (TGA) to facilitate attachments of SnOx particles onto the substrate. However, nonvolatile TGA is reported to harm the operational stability of PSCs. In this work, a volatile oxalic acid (OA) is introduced as an alternative to TGA. OA, a dicarboxylic acid, functions as a chemical linker for the nucleation and attachment of particles to the substrate in the chemical bath. Moreover, OA can be readily removed through thermal annealing followed by a mild H2O2 treatment, as shown by FTIR measurements. Synergistically, the mild H2O2 treatment selectively oxidizes the surface of the SnOx layer, minimizing nonradiative interface carrier recombination. EELS (electron-energy-loss spectroscopy) confirms that the SnOx surface is dominated by Sn4+, while the bulk is a mixture of Sn2+ and Sn4+. This rational design of a CBD SnOx layer leads to devices with T85 ≈1500 h, a significant improvement over the TGA-based device with T80 ≈250 h. The champion device reached a power conversion efficiency of 24.6%. This work offers a rationale for optimizing the complex parameter space of CBD SnOx to achieve efficient and stable PSCs.
</summary>
<dc:date>2023-07-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reduced recombination via tunable surface fields in perovskite thin films</title>
<link href="https://hdl.handle.net/1721.1/164996" rel="alternate"/>
<author>
<name>deQuilettes, Dane W</name>
</author>
<author>
<name>Yoo, Jason J</name>
</author>
<author>
<name>Brenes, Roberto</name>
</author>
<author>
<name>Kosasih, Felix Utama</name>
</author>
<author>
<name>Laitz, Madeleine</name>
</author>
<author>
<name>Dou, Benjia Dak</name>
</author>
<author>
<name>Graham, Daniel J</name>
</author>
<author>
<name>Ho, Kevin</name>
</author>
<author>
<name>Shi, Yangwei</name>
</author>
<author>
<name>Shin, Seong Sik</name>
</author>
<author>
<name>Ducati, Caterina</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<author>
<name>Bulović, Vladimir</name>
</author>
<id>https://hdl.handle.net/1721.1/164996</id>
<updated>2026-05-08T03:14:08Z</updated>
<published>2024-02-28T00:00:00Z</published>
<summary type="text">Reduced recombination via tunable surface fields in perovskite thin films
deQuilettes, Dane W; Yoo, Jason J; Brenes, Roberto; Kosasih, Felix Utama; Laitz, Madeleine; Dou, Benjia Dak; Graham, Daniel J; Ho, Kevin; Shi, Yangwei; Shin, Seong Sik; Ducati, Caterina; Bawendi, Moungi G; Bulović, Vladimir
The ability to reduce energy loss at semiconductor surfaces through passivation or surface field engineering is an essential step in the manufacturing of efficient photovoltaic (PV) and optoelectronic devices. Similarly, surface modification of emerging halide perovskites with quasi-two-dimensional (2D) heterostructures is now ubiquitous to achieve PV power conversion efficiencies (PCEs) &gt;25%, yet a fundamental understanding to how these treatments function is still generally lacking. Here we use a unique combination of depth-sensitive nanoscale characterization techniques to uncover a tunable passivation strategy and mechanism found in perovskite PV devices that were the first to reach the &gt;25% PCE milestone. Namely, treatment with hexylammonium bromide leads to the simultaneous formation of an iodide-rich 2D layer along with a Br halide gradient that extends from defective surfaces and grain boundaries into the bulk three-dimensional (3D) layer. This interface can be optimized to extend the charge carrier lifetime to record values &gt;30 μs and to reduce interfacial recombination velocities to values as low as &lt;7 cm s−1.
</summary>
<dc:date>2024-02-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Solution-phase sample-averaged single-particle spectroscopy of quantum emitters with femtosecond resolution</title>
<link href="https://hdl.handle.net/1721.1/164995" rel="alternate"/>
<author>
<name>Shi, Jiaojian</name>
</author>
<author>
<name>Shen, Yuejun</name>
</author>
<author>
<name>Pan, Feng</name>
</author>
<author>
<name>Sun, Weiwei</name>
</author>
<author>
<name>Mangu, Anudeep</name>
</author>
<author>
<name>Shi, Cindy</name>
</author>
<author>
<name>McKeown-Green, Amy</name>
</author>
<author>
<name>Moradifar, Parivash</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<author>
<name>Moerner, WE</name>
</author>
<author>
<name>Dionne, Jennifer A</name>
</author>
<author>
<name>Liu, Fang</name>
</author>
<author>
<name>Lindenberg, Aaron M</name>
</author>
<id>https://hdl.handle.net/1721.1/164995</id>
<updated>2026-04-24T03:15:32Z</updated>
<published>2024-04-08T00:00:00Z</published>
<summary type="text">Solution-phase sample-averaged single-particle spectroscopy of quantum emitters with femtosecond resolution
Shi, Jiaojian; Shen, Yuejun; Pan, Feng; Sun, Weiwei; Mangu, Anudeep; Shi, Cindy; McKeown-Green, Amy; Moradifar, Parivash; Bawendi, Moungi G; Moerner, WE; Dionne, Jennifer A; Liu, Fang; Lindenberg, Aaron M
The development of many quantum optical technologies depends on the availability of single quantum emitters with near-perfect coherence. Systematic improvement is limited by a lack of understanding of the microscopic energy flow at the single-emitter level and ultrafast timescales. Here we utilize a combination of fluorescence correlation spectroscopy and ultrafast spectroscopy to capture the sample-averaged dynamics of defects with single-particle sensitivity. We employ this approach to study heterogeneous emitters in two-dimensional hexagonal boron nitride. From milliseconds to nanoseconds, the translational, shelving, rotational and antibunching features are disentangled in time, which quantifies the normalized two-photon emission quantum yield. Leveraging the femtosecond resolution of this technique, we visualize electron–phonon coupling and discover the acceleration of polaronic formation on multi-electron excitation. Corroborated with theory, this translates to the photon fidelity characterization of cascaded emission efficiency and decoherence time. Our work provides a framework for ultrafast spectroscopy in heterogeneous emitters, opening new avenues of extreme-scale characterization for quantum applications.
</summary>
<dc:date>2024-04-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Additive‐Free Oxidized Spiro‐MeOTAD Hole Transport Layer Significantly Improves Thermal Solar Cell Stability</title>
<link href="https://hdl.handle.net/1721.1/164994" rel="alternate"/>
<author>
<name>Grotevent, Matthias J</name>
</author>
<author>
<name>Lu, Yongli</name>
</author>
<author>
<name>Šverko, Tara</name>
</author>
<author>
<name>Shih, Meng‐Chen</name>
</author>
<author>
<name>Tan, Shaun</name>
</author>
<author>
<name>Zhu, Hua</name>
</author>
<author>
<name>Dang, Tong</name>
</author>
<author>
<name>Mwaura, Jeremiah K</name>
</author>
<author>
<name>Swartwout, Richard</name>
</author>
<author>
<name>Beiglböck, Finn</name>
</author>
<author>
<name>Kothe, Linda</name>
</author>
<author>
<name>Bulović, Vladimir</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<id>https://hdl.handle.net/1721.1/164994</id>
<updated>2026-04-24T03:14:37Z</updated>
<published>2024-06-06T00:00:00Z</published>
<summary type="text">Additive‐Free Oxidized Spiro‐MeOTAD Hole Transport Layer Significantly Improves Thermal Solar Cell Stability
Grotevent, Matthias J; Lu, Yongli; Šverko, Tara; Shih, Meng‐Chen; Tan, Shaun; Zhu, Hua; Dang, Tong; Mwaura, Jeremiah K; Swartwout, Richard; Beiglböck, Finn; Kothe, Linda; Bulović, Vladimir; Bawendi, Moungi G
Perovskite solar cells are among the most promising new solar technologies, already surpassing polycrystalline silicon solar cell efficiencies. The stability of the highest efficiency devices at elevated temperature is, however, poor. These cells typically use Spiro‐MeOTAD as the hole transporting layer. It is generally believed that additives, required for enhancing electrical conductivity and optimizing energy level alignment, are responsible for the reduced stability—inferring that Spiro‐MeOTAD based hole transporting layers are intrinsically unstable. Here, a reliable noble metal free synthesis of Spiro‐MeOTAD (bis(trifluoromethane)sulfonimide)&lt;jats:sub&gt;4&lt;/jats:sub&gt; is presented which is used as the oxidizing agent. No additives are added to the partially oxidized Spiro‐MeOTAD hole‐transporting layer. Device efficiencies up to 24.2% are achieved. Electrical conductivity is largely developed by the first 1% oxidation. Further oxidation shifts the energy levels away from the vacuum level, which allows tuning of the energy level alignment without the use of additives—contradicting the current understanding of this system. Without additives, devices demonstrate significant improvement in stability at elevated temperatures up to 85 °C under one sun over 1400 h continuous illumination. The remaining degradation is pinpointed to ion migration and reactions in the perovskite layer which may be further suppressed with compositional engineering and adequate ion barrier layers.
</summary>
<dc:date>2024-06-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bright and Fast Emission from Robust Supramolecular J-Aggregate Nanostructures through Silica-Encapsulation</title>
<link href="https://hdl.handle.net/1721.1/164993" rel="alternate"/>
<author>
<name>Thanippuli Arachchi, Dimuthu H</name>
</author>
<author>
<name>Barotov, Ulugbek</name>
</author>
<author>
<name>Perkinson, Collin F</name>
</author>
<author>
<name>Šverko, Tara</name>
</author>
<author>
<name>Kaplan, Alexander EK</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<id>https://hdl.handle.net/1721.1/164993</id>
<updated>2026-04-24T03:15:53Z</updated>
<published>2024-07-24T00:00:00Z</published>
<summary type="text">Bright and Fast Emission from Robust Supramolecular J-Aggregate Nanostructures through Silica-Encapsulation
Thanippuli Arachchi, Dimuthu H; Barotov, Ulugbek; Perkinson, Collin F; Šverko, Tara; Kaplan, Alexander EK; Bawendi, Moungi G
We introduce a two-step silica-encapsulation procedure to optimize both the optical efficiency and structural robustness of 5,5',6,6'-tetrachloro-1,1'-diethyl-3,3'-di(4-sulfobutyl)-benzimidazolocarbocyanine (TDBC), a two-dimensional sheet-like J-aggregate. We report a fluorescence quantum yield of ∼98%, the highest quantum yield recorded for any J-aggregate structure at room temperature, and a fast, emissive lifetime of 234 ps. Silica, as an encapsulating matrix, provides optical transparency, chemical inertness, and robustness to dilution, while rigidifying the J-aggregate structure. Our in situ encapsulation process preserves the excitonic structure in TDBC J-aggregates, maintaining their light absorption and emission properties. The homogeneous silica coating has an average thickness of 0.5-1 nm around J-aggregate sheets. Silica encapsulation permits extensive dilutions of J-aggregates without significant disintegration into monomers. The narrow absorbance and emission line widths exhibit further narrowing upon cooling to 79 K, which is consistent with J-type coupling in the encapsulated aggregates. This silica TDBC J-aggregate construct signifies (1) a bright, fast, and robust fluorophore system, (2) a platform for further manipulation of J-aggregates as building blocks for integration with other optical materials and structures, and (3) a system for fundamental studies of exciton delocalization, transport, and emission dynamics within a rigid matrix.
</summary>
<dc:date>2024-07-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Toward biophysical markers of depression vulnerability</title>
<link href="https://hdl.handle.net/1721.1/164992" rel="alternate"/>
<author>
<name>Pinotsis, DA</name>
</author>
<author>
<name>Fitzgerald, S</name>
</author>
<author>
<name>See, C</name>
</author>
<author>
<name>Sementsova, A</name>
</author>
<author>
<name>Widge, AS</name>
</author>
<id>https://hdl.handle.net/1721.1/164992</id>
<updated>2026-05-08T03:13:20Z</updated>
<published>2022-10-18T00:00:00Z</published>
<summary type="text">Toward biophysical markers of depression vulnerability
Pinotsis, DA; Fitzgerald, S; See, C; Sementsova, A; Widge, AS
A major difficulty with treating psychiatric disorders is their heterogeneity: different neural causes can lead to the same phenotype. To address this, we propose describing the underlying pathophysiology in terms of interpretable, biophysical parameters of a neural model derived from the electroencephalogram. We analyzed data from a small patient cohort of patients with depression and controls. Using DCM, we constructed biophysical models that describe neural dynamics in a cortical network activated during a task that is used to assess depression state. We show that biophysical model parameters are biomarkers, that is, variables that allow subtyping of depression at a biological level. They yield a low dimensional, interpretable feature space that allowed description of differences between individual patients with depressive symptoms. They could capture internal heterogeneity/variance of depression state and achieve significantly better classification than commonly used EEG features. Our work is a proof of concept that a combination of biophysical models and machine learning may outperform earlier approaches based on classical statistics and raw brain data.
</summary>
<dc:date>2022-10-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Understanding Robustness and Generalization of Artificial Neural Networks Through Fourier Masks</title>
<link href="https://hdl.handle.net/1721.1/164991" rel="alternate"/>
<author>
<name>Karantzas, Nikos</name>
</author>
<author>
<name>Besier, Emma</name>
</author>
<author>
<name>Ortega Caro, Josue</name>
</author>
<author>
<name>Pitkow, Xaq</name>
</author>
<author>
<name>Tolias, Andreas S.</name>
</author>
<author>
<name>Patel, Ankit B.</name>
</author>
<author>
<name>Anselmi, Fabio</name>
</author>
<id>https://hdl.handle.net/1721.1/164991</id>
<updated>2026-05-08T03:12:21Z</updated>
<published>2022-07-12T00:00:00Z</published>
<summary type="text">Understanding Robustness and Generalization of Artificial Neural Networks Through Fourier Masks
Karantzas, Nikos; Besier, Emma; Ortega Caro, Josue; Pitkow, Xaq; Tolias, Andreas S.; Patel, Ankit B.; Anselmi, Fabio
Despite the enormous success of artificial neural networks (ANNs) in many disciplines, the characterization of their computations and the origin of key properties such as generalization and robustness remain open questions. Recent literature suggests that robust networks with good generalization properties tend to be biased toward processing low frequencies in images. To explore the frequency bias hypothesis further, we develop an algorithm that allows us to learn modulatory masks highlighting the essential input frequencies needed for preserving a trained network's performance. We achieve this by imposing invariance in the loss with respect to such modulations in the input frequencies. We first use our method to test the low-frequency preference hypothesis of adversarially trained or data-augmented networks. Our results suggest that adversarially robust networks indeed exhibit a low-frequency bias but we find this bias is also dependent on directions in frequency space. However, this is not necessarily true for other types of data augmentation. Our results also indicate that the essential frequencies in question are effectively the ones used to achieve generalization in the first place. Surprisingly, images seen through these modulatory masks are not recognizable and resemble texture-like patterns.
</summary>
<dc:date>2022-07-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Enhancement of Cyanobacterial Bloom Monitoring in Lake Taihu Using Dual Red-Edge Bands of GF-6/WFV: Multi-Dimensional Feature Combination and Extraction Accuracy Analysis</title>
<link href="https://hdl.handle.net/1721.1/164990" rel="alternate"/>
<author>
<name>Sun, Yunxiao</name>
</author>
<author>
<name>Zhang, Ruolin</name>
</author>
<author>
<name>Zhao, Chunhong</name>
</author>
<author>
<name>Meng, Qingyan</name>
</author>
<author>
<name>Sun, Zhenhui</name>
</author>
<author>
<name>Wang, Jialong</name>
</author>
<author>
<name>Wu, Jun</name>
</author>
<author>
<name>Wang, Yao</name>
</author>
<author>
<name>Gao, Decai</name>
</author>
<author>
<name>Guan, Huyi</name>
</author>
<id>https://hdl.handle.net/1721.1/164990</id>
<updated>2026-04-24T03:14:23Z</updated>
<published>2026-02-20T00:00:00Z</published>
<summary type="text">Enhancement of Cyanobacterial Bloom Monitoring in Lake Taihu Using Dual Red-Edge Bands of GF-6/WFV: Multi-Dimensional Feature Combination and Extraction Accuracy Analysis
Sun, Yunxiao; Zhang, Ruolin; Zhao, Chunhong; Meng, Qingyan; Sun, Zhenhui; Wang, Jialong; Wu, Jun; Wang, Yao; Gao, Decai; Guan, Huyi
Cyanobacterial blooms pose a serious threat to freshwater ecosystems, necessitating accurate remote sensing monitoring. Although red-edge bands show potential in terrestrial monitoring, their multi-dimensional features (i.e., spectral, textural, and index-based characteristics) remain underutilized for aquatic blooms. This study leverages the dual red-edge bands (710 nm and 750 nm) of GF-6/WFV to enhance cyanobacterial bloom identification in Lake Taihu. Multi-temporal images from 2019–2023 were used to construct red-edge features in three dimensions: spectral (evaluated via adaptive band selection method) and Jeffries–Matusita–Bhattacharyya distance), texture (based on Gray Level Co-occurrence Matrix and principal component analysis), and indices (nine vegetation indices ranked by Random Forest importance). Twelve feature-combination schemes were designed and implemented with a Random Forest classifier. Results show that red-edge features consistently improve identification accuracy. Quantitatively, compared to the basic four-band (RGBN) combination, the 710 nm band improved spectral separability by an average of 9.63%, whereas the 750 nm band yielded a lower average improvement of 5.69%. Red-edge indices, especially the modified chlorophyll absorption reflectance index 1 (MCARI1) and normalized difference red-edge index (NDRE), exhibited higher importance than non-red-edge indices. All schemes incorporating red-edge features achieved mean overall accuracies of 92.8–94.9% and Kappa coefficients of 0.86–0.94, surpassing the basic four-band scheme. Among these features, red-edge indices contributed most significantly to accuracy gains, increasing the overall accuracy by an average of 0.36–6.06% and the Kappa coefficient by up to 0.06. The enhancement effect of the red-edge 710 nm band features was superior to that of the 750 nm band. This study demonstrates that multi-dimensional red-edge features effectively enhance the identification accuracy of cyanobacterial blooms and provides a methodological reference for operational GF-6 applications in water quality monitoring.
</summary>
<dc:date>2026-02-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Biological Activity of Metal Complexes</title>
<link href="https://hdl.handle.net/1721.1/164989" rel="alternate"/>
<author>
<name>Sharma, Vinay K.</name>
</author>
<id>https://hdl.handle.net/1721.1/164989</id>
<updated>2026-04-24T03:14:21Z</updated>
<published>2026-02-17T00:00:00Z</published>
<summary type="text">Biological Activity of Metal Complexes
Sharma, Vinay K.
Metal complexes play a fundamental role in biological systems and continue to attract sustained interest due to their remarkable potential in therapeutic, diagnostic, and biotechnological applications [1–8]. In recent years, the field of bioinorganic chemistry has advanced rapidly, driven by progress in coordination chemistry, spectroscopy, nanotechnology, and molecular biology [9–22]. These developments have enabled a deeper understanding of how metal ions and complexes interact with biomolecular targets and have opened new avenues for the rational design of metal-based agents for cancer therapy, antimicrobial treatment, imaging, and the study of metal-mediated biochemical processes [23–30].
</summary>
<dc:date>2026-02-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Single Parameter Model for Galaxy Rotation Curves</title>
<link href="https://hdl.handle.net/1721.1/164988" rel="alternate"/>
<author>
<name>Cisneros, Sophia N.</name>
</author>
<author>
<name>Ott, Rich</name>
</author>
<author>
<name>Crowley, Meagan</name>
</author>
<author>
<name>Roberts, Amy</name>
</author>
<author>
<name>Paz, Marcus</name>
</author>
<id>https://hdl.handle.net/1721.1/164988</id>
<updated>2026-04-24T03:14:43Z</updated>
<published>2026-02-15T00:00:00Z</published>
<summary type="text">Single Parameter Model for Galaxy Rotation Curves
Cisneros, Sophia N.; Ott, Rich; Crowley, Meagan; Roberts, Amy; Paz, Marcus
One key piece of evidence for dark matter is the rotation-curve problem: the disagreement between measured galactic rotation curves and their luminous mass. A novel solution to this problem is presented here, in a model that predicts observed Doppler-shifted spectra based only on the luminous matter estimates and one free model parameter &#120572;. This model is applied to fit the rotation curves of the SPARC sample of 175 galaxies, yielding mass-to-light ratios, goodness of fit measurements, and &#120572;. The measured average &#120594;2&#13;
&#119903; =2.24 compares favorably with the Navarro-Frenk-White dark matter model’s average of &#120594;2&#13;
&#119903; =4.19 for the same data, and more galaxies are successfully fit by this model. The model provides a useful formulation linking luminous matter to the observed rotation curves, with the dark matter contribution to galaxies encoded in two transformation terms of the luminous mass. It also offers a lower-parameter characterization of the rotation curve problem, and a power law relationship between &#120572; and galactic photometric quantities is observed, potentially removing the need for the free parameter.
</summary>
<dc:date>2026-02-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Non-Clinical Safety of GRAd Vector-Based COVID-19 and HIV Vaccines Supports a Platform Regulatory Approach</title>
<link href="https://hdl.handle.net/1721.1/164987" rel="alternate"/>
<author>
<name>Paalangara, Reji</name>
</author>
<author>
<name>Gohin, Stephanie</name>
</author>
<author>
<name>Menard, Alexis</name>
</author>
<author>
<name>Amy, Charlotte</name>
</author>
<author>
<name>Berrabah, Wahiba</name>
</author>
<author>
<name>Rogue, Alexandra</name>
</author>
<author>
<name>Getz, Matthew A.</name>
</author>
<author>
<name>Alrubayyi, Aljawharah</name>
</author>
<author>
<name>Battella, Simone</name>
</author>
<author>
<name>Raggioli, Angelo</name>
</author>
<author>
<name>Gentile, Michela</name>
</author>
<author>
<name>Di Rita, Anthea</name>
</author>
<author>
<name>Noto, Alessia</name>
</author>
<author>
<name>Miselli, Giuseppina</name>
</author>
<author>
<name>Grazioli, Fabiana</name>
</author>
<author>
<name>Napolitano, Federico</name>
</author>
<author>
<name>Sowcik, Dhurata</name>
</author>
<author>
<name>Soriani, Marco</name>
</author>
<author>
<name>Chmielewski, Benjamin</name>
</author>
<author>
<name>Molife, Lebohang</name>
</author>
<id>https://hdl.handle.net/1721.1/164987</id>
<updated>2026-03-25T03:16:25Z</updated>
<published>2026-02-06T00:00:00Z</published>
<summary type="text">Non-Clinical Safety of GRAd Vector-Based COVID-19 and HIV Vaccines Supports a Platform Regulatory Approach
Paalangara, Reji; Gohin, Stephanie; Menard, Alexis; Amy, Charlotte; Berrabah, Wahiba; Rogue, Alexandra; Getz, Matthew A.; Alrubayyi, Aljawharah; Battella, Simone; Raggioli, Angelo; Gentile, Michela; Di Rita, Anthea; Noto, Alessia; Miselli, Giuseppina; Grazioli, Fabiana; Napolitano, Federico; Sowcik, Dhurata; Soriani, Marco; Chmielewski, Benjamin; Molife, Lebohang
Background/Objectives: The rapid development of safe and efficacious vaccines is often hindered by extensive, mandated non-clinical safety evaluations in animals. With the aim to provide scientific evidence supporting a “vaccine platform approach”, here we present the complete non-clinical studies for two investigational vaccines, GRAd-COV2 and GRAdHIVNE1, based on GRAd, a gorilla-derived group C adenoviral vector. Methods: The biodistribution of GRAd genomes following the intramuscular administration of the vaccines was assessed in rats by a sensitive qPCR method. Local tolerance and systemic toxic effects were evaluated in single- and repeated-dose toxicity studies in rabbits. Results: GRAd-COV2 and GRAdHIVNE1 were well-tolerated. Distribution was highly confined to the injection site and draining lymph nodes, and toxicity profile consisted of transient, non-adverse inflammatory responses, while the expected immune responses to the encoded antigens were successfully induced. Notably, both vaccines demonstrated a consistent safety profile despite transgene and backbone differences, comparable to other replication-defective adenoviral vectors. Conclusions: The established non-clinical safety profile of the GRAd platform provides a robust foundation for a more efficient and streamlined regulatory pathway. By leveraging this prior knowledge, future GRAd-based vaccines can achieve accelerated clinical development while fully adhering to the ethical principles of replacement, reduction, and refinement of animal use in research.
</summary>
<dc:date>2026-02-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design and User-Centered Field Evaluation of an Accessible Precision Irrigation Tool and Its Human–Machine Interaction on a Jordanian Farm</title>
<link href="https://hdl.handle.net/1721.1/164986" rel="alternate"/>
<author>
<name>Van de Zande, Georgia D.</name>
</author>
<author>
<name>Sheline, Carolyn</name>
</author>
<author>
<name>Pratt, Shane R.</name>
</author>
<author>
<name>Winter V, Amos G.</name>
</author>
<id>https://hdl.handle.net/1721.1/164986</id>
<updated>2026-04-24T03:15:46Z</updated>
<published>2026-02-04T00:00:00Z</published>
<summary type="text">Design and User-Centered Field Evaluation of an Accessible Precision Irrigation Tool and Its Human–Machine Interaction on a Jordanian Farm
Van de Zande, Georgia D.; Sheline, Carolyn; Pratt, Shane R.; Winter V, Amos G.
This work aims to demonstrate the successful, long-term human use of an automatic scheduling-manual operation (AS-MO) precision irrigation tool by farmers on a medium-scale Jordanian farm. Innovation in low-cost, accessible, and water-efficient irrigation technologies is critical as water resources become scarce, especially on resource-constrained farms in the drought-prone Middle East and North Africa (MENA) region. Prior work has shown that a proposed AS-MO decision support tool could bridge the gap between fully manual irrigation—a common practice on many MENA farms—and existing precision agriculture solutions, which are often too expensive or complex for medium-scale farmers to adopt. Recent developments have also demonstrated that the scheduling theory behind the proposed AS-MO tool uses up to 44% less water compared to fully manual irrigation. However, a functional design of the AS-MO tool has not been realized nor has it been demonstrated on a farm with farmer users. This work documents the detailed design of an AS-MO tool’s human–machine interaction (HMI) and validates the human execution of the tool in context. Through an 11-week case study conducted on a Jordanian farm, we show that farmers used a functional prototype of the AS-MO tool as intended. The functional tool prototype was designed to deliver a long-term AS-MO user experience to study participants. The prototype monitored local weather conditions, generated water-efficient schedules using an existing scheduling theory, and notified users’ phones when they should manually open or close valves. The irrigation practices of participants using the AS-MO prototype were measured, and participants demonstrated successful use of the tool. Users correctly confirmed 93% of the scheduled events using the tool’s HMI. Despite manual operation, a majority of confirmed irrigation event durations fell within 15% of the automatically scheduled durations; relative to the length of scheduled irrigation event durations, the medians of confirmed and scheduled durations were 102% and 88%, respectively. These results demonstrate the success of the tool’s decision support ability. Feedback from study participants can support the AS-MO tool’s next design iteration and can inform the development of other decision support systems designed for resource-constrained, medium-scale farms. This work presents an important step towards developing a precision irrigation tool that, if adopted at scale, could increase the adoption of water-efficient irrigation practices on resource-constrained farms that are not served by existing technology, improving sustainable agriculture in MENA.
</summary>
<dc:date>2026-02-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Effect of Genipin Matrix Augmentation on the Retention of Glycosaminoglycans in the Intervertebral Disc—A Pilot Study</title>
<link href="https://hdl.handle.net/1721.1/164985" rel="alternate"/>
<author>
<name>Hedman, Thomas</name>
</author>
<author>
<name>Brown, Matthew</name>
</author>
<author>
<name>Slusarewicz, Pawel</name>
</author>
<id>https://hdl.handle.net/1721.1/164985</id>
<updated>2026-05-08T03:12:37Z</updated>
<published>2026-02-02T00:00:00Z</published>
<summary type="text">The Effect of Genipin Matrix Augmentation on the Retention of Glycosaminoglycans in the Intervertebral Disc—A Pilot Study
Hedman, Thomas; Brown, Matthew; Slusarewicz, Pawel
The degradation of intervertebral disc proteoglycans, including the loss or shortening of their hydrophilic glycosaminoglycan chains, causes a loss of disc hydration, leading to an increase in solid matrix stresses. This illustrates one aspect of the complex multifactorial relationship between tissue degradation and the resulting mechanical dysfunction. Genipin matrix augmentation has previously been evaluated with regard to its ability to improve mechanical properties of the disc, increasing joint stability and permeability. The study aim was to evaluate the ability of genipin augmentation to increase retention of glycosaminoglycans in disc specimens subjected to free swelling. Three different models were utilized: whole bovine caudal discs, partial annulus specimens from bovine, and human thoracic discs. Total glycosaminoglycan release to a surrounding bath was quantified using a modified dimethyl-methylene blue assay. Genipin solution injections reduced glycosaminoglycan loss by 44.0% in intact bovine discs compared to buffer-only controls (p = 0.027), by 75.8% in partial bovine annulus specimens (p = 0.0004), and by 51.9% in human annulus specimens (p = 0.017). The combination of increased permeability and glycosaminoglycans retention may produce beneficial effects on nutritional flow, diurnal irrigation, and reduction of matrix solid phase stress. Combining these effects with the ability to improve joint stability and augment tissue mechanical properties suggests this nano-scale device may be capable of arresting ongoing degeneration.
</summary>
<dc:date>2026-02-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Novel Recurrent Neural Network Framework for Prediction and Treatment of Oncogenic Mutation Progression</title>
<link href="https://hdl.handle.net/1721.1/164984" rel="alternate"/>
<author>
<name>Parthasarathy, Rishab</name>
</author>
<author>
<name>Bhowmik, Achintya K.</name>
</author>
<id>https://hdl.handle.net/1721.1/164984</id>
<updated>2026-04-24T03:15:36Z</updated>
<published>2026-02-02T00:00:00Z</published>
<summary type="text">A Novel Recurrent Neural Network Framework for Prediction and Treatment of Oncogenic Mutation Progression
Parthasarathy, Rishab; Bhowmik, Achintya K.
Despite significant medical advancements, cancer remains the second leading cause of death in the US, causing over 600,000 deaths per year. One emerging field, pathway analysis, is promising but still relies on manually derived wet lab data, which is time-consuming to acquire. This work proposes an efficient, effective, end-to-end framework for Artificial Intelligence (AI)-based pathway analysis that predicts both cancer severity and mutation progression in order to recommend possible treatments. The proposed technique involves a novel combination of time-series machine learning models and pathway analysis. First, mutation sequences were isolated from The Cancer Genome Atlas (TCGA) Database. Then, a novel preprocessing algorithm was used to filter key mutations by mutation frequency. This data was fed into a Recurrent Neural Network (RNN) that predicted cancer severity. The model probabilistically used the RNN predictions, information from the preprocessing algorithm, and multiple drug-target databases to predict future mutations and recommend possible treatments. This framework achieved robust results and Receiver Operating Characteristic (ROC) curves (a key statistical metric) with accuracies greater than 60%, similar to existing cancer diagnostics. In addition, preprocessing played a key role in isolating a few hundred key driver mutations per cancer stage, consistent with current research. Heatmaps based on predicted gene frequency were also generated, highlighting key mutations in each cancer. Overall, this work is the first to propose an efficient, cost-effective end-to-end framework for projecting cancer prognosis and providing possible treatments without relying on expensive, time-consuming wet lab work.
</summary>
<dc:date>2026-02-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>All-Pay Auctions with Different Forfeits</title>
<link href="https://hdl.handle.net/1721.1/164983" rel="alternate"/>
<author>
<name>Kang, Benjamin</name>
</author>
<author>
<name>Unwin, James</name>
</author>
<id>https://hdl.handle.net/1721.1/164983</id>
<updated>2026-03-25T03:16:28Z</updated>
<published>2026-01-09T00:00:00Z</published>
<summary type="text">All-Pay Auctions with Different Forfeits
Kang, Benjamin; Unwin, James
In an auction, each party bids a certain amount, and the one who bids the highest is the winner. Interestingly, auctions can also be used as models for other real-world systems. In an all-pay auction all parties must pay a forfeit for bidding. In the most commonly studied all-pay auction, parties forfeit their entire bid, and this has been considered as a model for expenditure on political campaigns. Here, we consider a number of alternative forfeits that might be used as models for different real-world competitions, such as preparing bids for defense or infrastructure contracts.
</summary>
<dc:date>2026-01-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Spontaneous formation of robust two-dimensional perovskite phases</title>
<link href="https://hdl.handle.net/1721.1/164982" rel="alternate"/>
<author>
<name>Tan, Shaun</name>
</author>
<author>
<name>Shih, Meng-Chen</name>
</author>
<author>
<name>Lu, Yongli</name>
</author>
<author>
<name>Choi, Seung-Gu</name>
</author>
<author>
<name>Dong, Yifan</name>
</author>
<author>
<name>Lee, Joo-Hong</name>
</author>
<author>
<name>Yavuz, Ilhan</name>
</author>
<author>
<name>Larson, Bryon W</name>
</author>
<author>
<name>Park, So Yeon</name>
</author>
<author>
<name>Kodalle, Tim</name>
</author>
<author>
<name>Zhang, Ruiqi</name>
</author>
<author>
<name>Grotevent, Matthias J</name>
</author>
<author>
<name>Lin, Yu-Kuan</name>
</author>
<author>
<name>Zhu, Hua</name>
</author>
<author>
<name>Bulović, Vladimir</name>
</author>
<author>
<name>Sutter-Fella, Carolin M</name>
</author>
<author>
<name>Park, Nam-Gyu</name>
</author>
<author>
<name>Beard, Matthew C</name>
</author>
<author>
<name>Lee, Jin-Wook</name>
</author>
<author>
<name>Zhu, Kai</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<id>https://hdl.handle.net/1721.1/164982</id>
<updated>2026-03-03T03:07:04Z</updated>
<published>2025-05-08T00:00:00Z</published>
<summary type="text">Spontaneous formation of robust two-dimensional perovskite phases
Tan, Shaun; Shih, Meng-Chen; Lu, Yongli; Choi, Seung-Gu; Dong, Yifan; Lee, Joo-Hong; Yavuz, Ilhan; Larson, Bryon W; Park, So Yeon; Kodalle, Tim; Zhang, Ruiqi; Grotevent, Matthias J; Lin, Yu-Kuan; Zhu, Hua; Bulović, Vladimir; Sutter-Fella, Carolin M; Park, Nam-Gyu; Beard, Matthew C; Lee, Jin-Wook; Zhu, Kai; Bawendi, Moungi G
The two-dimensional on three-dimensional (2D/3D) perovskite bilayer heterostructure can improve the stability and performance of perovskite solar cells. We show that the 2D/3D perovskite stack in a device evolves dynamically during its end-of-life decomposition. Initially phase-pure 2D interlayers can evolve differently, resulting in different device stabilities. We show that a robust 2D interlayer can be formed using mixed solvents to regulate its crystallinity and phase purity. The resulting 2D/3D devices achieved 25.9% efficiency and had good durability, retaining 91% of their initial performance after 1074 hours at 85°C using maximum power point tracking.
</summary>
<dc:date>2025-05-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Third-order photon correlations extract single-nanocrystal multiexciton properties in solution</title>
<link href="https://hdl.handle.net/1721.1/164981" rel="alternate"/>
<author>
<name>Horowitz, Jonah R</name>
</author>
<author>
<name>Berkinsky, David B</name>
</author>
<author>
<name>Bendekgey, Henry C</name>
</author>
<author>
<name>Tye, Oliver J</name>
</author>
<author>
<name>Šverko, Tara</name>
</author>
<author>
<name>Shulenberger, Katherine E</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<id>https://hdl.handle.net/1721.1/164981</id>
<updated>2026-05-08T03:14:24Z</updated>
<published>2025-07-28T00:00:00Z</published>
<summary type="text">Third-order photon correlations extract single-nanocrystal multiexciton properties in solution
Horowitz, Jonah R; Berkinsky, David B; Bendekgey, Henry C; Tye, Oliver J; Šverko, Tara; Shulenberger, Katherine E; Bawendi, Moungi G
Colloidal semiconductor nanocrystals are considered promising materials for high-flux optical applications, including lasing, light-emitting diodes, biological imaging, and quantum optics. In high-flux applications, multiexcitons can significantly contribute to emission, influencing its brightness, spectral purity, and kinetics. As a result, understanding and controlling multiexciton emission in colloidal nanocrystal materials is of the utmost importance. In the past, single-nanocrystal photon correlation methods have been applied to understand biexciton and triexciton efficiencies, lifetimes, and spectra. While powerful, such methods suffer from user selection bias and require stable emission from single nanocrystals. To compensate for this shortcoming, second-order correlation methods were developed to extract sample-averaged biexciton properties from a solution of nanocrystals. Until now, however, the analogous third-order solution photon correlation methods remained unexplored. In this work, we present a pair of third-order photon correlation techniques to obtain the sample-averaged single-nanocrystal triexciton quantum yield and lifetime in a solution-phase experiment. These techniques derive from the relationship between the Poisson probability of nanocrystal photon absorption and the intrinsic probability of nanocrystal photon emission. We validate the theoretical background of these techniques by creating a numerical model to simulate the diffusion and emission of many nanocrystals in solution. Our simulations confirm that the average triexciton quantum yield and triexciton lifetime can be extracted from a solution of nanocrystals. These techniques will enable researchers to gain a better understanding of the fundamental multiexciton properties of colloidal nanocrystals.
</summary>
<dc:date>2025-07-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Challenges of II‐VI and III‐V Blue Quantum Dot Light‐Emitting Diodes</title>
<link href="https://hdl.handle.net/1721.1/164980" rel="alternate"/>
<author>
<name>Tan, Shaun</name>
</author>
<author>
<name>Horowitz, Jonah R</name>
</author>
<author>
<name>Tye, Oliver J</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<id>https://hdl.handle.net/1721.1/164980</id>
<updated>2026-04-23T03:15:31Z</updated>
<published>2025-09-22T00:00:00Z</published>
<summary type="text">Challenges of II‐VI and III‐V Blue Quantum Dot Light‐Emitting Diodes
Tan, Shaun; Horowitz, Jonah R; Tye, Oliver J; Bawendi, Moungi G
Quantum dot light-emitting diodes (QD-LEDs) are electroluminescent devices where the emissive layer consists of inorganic colloidal quantum dots. Recent breakthroughs have enabled the development of bright and efficient blue-emitting QD-LEDs based on heavy metal-free compositions. However, challenges remain that hinder their practical application in electroluminescent displays and lighting technologies. The primary obstacle is their limited operational lifetimes which remain significantly below practical requirement standards, especially in comparison to the red- and green-emitting QD-LEDs. Another important issue is the low color purity and broad spectral linewidths of heavy metal-free blue quantum dot compositions. Additional problems include transient electroluminescent behaviors such as fluorescence intermittency and positive aging effects. This review examines the current understanding of the physical mechanisms underlying these challenges faced by blue QD-LEDs. Often, contradictory explanations are proposed to account for the same phenomenon. Here, potential interpretations are suggested that may help reconcile the conflicting reports. Recent advances are further examined that have contributed to the development of state-of-the-art blue QD-LEDs.
</summary>
<dc:date>2025-09-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Impact of Processing Environment on Anti-Solvent Free FAPbI3 Films and Solar Cells</title>
<link href="https://hdl.handle.net/1721.1/164979" rel="alternate"/>
<author>
<name>Wall, Elizabeth M</name>
</author>
<author>
<name>Lin, Yu‐Kuan</name>
</author>
<author>
<name>Bawendi, Moungi</name>
</author>
<author>
<name>Burlingame, Quinn C</name>
</author>
<author>
<name>Loo, Yueh‐Lin</name>
</author>
<id>https://hdl.handle.net/1721.1/164979</id>
<updated>2026-04-24T03:15:06Z</updated>
<published>2025-12-17T00:00:00Z</published>
<summary type="text">Impact of Processing Environment on Anti-Solvent Free FAPbI3 Films and Solar Cells
Wall, Elizabeth M; Lin, Yu‐Kuan; Bawendi, Moungi; Burlingame, Quinn C; Loo, Yueh‐Lin
As perovskite solar cells approach commercialization, understanding the environmental sensitivities of perovskites during fabrication becomes increasingly important. In this work, the humidity-dependence of each deposition and annealing step in the anti-solvent-free two-step formamidinium lead iodide fabrication process is investigated in air and N2. In-situ grazing-incidence wide-angle X-ray scattering measurements during spin-coating indicate that humidity affects the formation and dynamics of intermediate phases in perovskite precursor films. These differences, and those induced by annealing in humidity, impact the structure, morphology, and composition of resultant perovskite films, though the initial performance of solar cells fabricated using these active layers is relatively insensitive to humidity across the range studied. In contrast, stability is maximized in devices with dry-processed active layers and those terminally annealed in humidity. Spin-coating of PbI2 is most environmentally sensitive—needle-like structures precipitate while spin-coating in 40% relative humidity leading to significantly reduced photovoltaic performance and device stability. Additionally, films and solar cells fabricated in air appear virtually identical to those fabricated in N2. Collectively, these results show that optimal performance and stability of two-step processed formamidinium lead iodide solar cells is achieved when fabricating active layers in a dry atmosphere or with some humidity during the final anneal.
</summary>
<dc:date>2025-12-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cognitive Reinforcement: Capturing Tacit Knowledge and Enhancing Expertise with a Biofeedback Interface for Visual Attention</title>
<link href="https://hdl.handle.net/1721.1/164978" rel="alternate"/>
<author>
<name>Armengol-Urpi, Alexandre</name>
</author>
<author>
<name>Salazar-Gomez, Andres F.</name>
</author>
<author>
<name>Sinha, Pawan</name>
</author>
<author>
<name>Sarma, Sanjay E.</name>
</author>
<id>https://hdl.handle.net/1721.1/164978</id>
<updated>2026-03-04T17:47:02Z</updated>
<published>2026-03-04T00:00:00Z</published>
<summary type="text">Cognitive Reinforcement: Capturing Tacit Knowledge and Enhancing Expertise with a Biofeedback Interface for Visual Attention
Armengol-Urpi, Alexandre; Salazar-Gomez, Andres F.; Sinha, Pawan; Sarma, Sanjay E.
Objective. Tacit or implicit knowledge refers to know-how that experts&#13;
possess but often cannot articulate, codify, or explicitly transfer to&#13;
others. This can present a significant challenge for learning, skill acquisition, and knowledge transfer across various domains, including those&#13;
that rely on apprenticeships, craftsmanship, sports, and medical imaging diagnosis. This study explores whether expert tacit knowledge can&#13;
be accessed and leveraged using an EEG and gaze-informed biofeedback interface to enhance expertise transfer and training. Approach.&#13;
We designed an image classification task where novices were trained&#13;
until they implicitly learned to classify images correctly, despite being&#13;
unaware of which image regions or features guided their decisions. The&#13;
task involved images with a hidden spatial asymmetry that even trained&#13;
participants did not explicitly recognize. Using combined eye-tracking&#13;
and EEG measures, we tracked both overt and covert visual attention to determine whether individuals unconsciously internalized this&#13;
asymmetry during learning. We then investigated whether providing&#13;
explicit gaze-informed feedback on their own implicit attention biases&#13;
could further improve task performance of trained participants. Main Results. Our findings reveal that as participants became trained, their&#13;
attention patterns —both overt and covert— consistently reflected an&#13;
unconscious awareness of image asymmetry, with attention biased toward&#13;
task-relevant image regions. Moreover, trained individuals who received&#13;
explicit feedback derived from their own gaze behavior showed additional improvements in classification performance compared to an equally&#13;
trained control group. Significance. These results open the door to novel&#13;
uses of biofeedback interfaces to facilitate new forms of expertise transfer, training, and collective intelligence. By extracting and conveying&#13;
tacit expert knowledge—ordinarily difficult to externalize—our interface&#13;
enables its transmission to novices, trained individuals, or even machine&#13;
learning systems. We refer to this process as cognitive reinforcement.
</summary>
<dc:date>2026-03-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Higher Siegel-Weil formulae over function fields</title>
<link href="https://hdl.handle.net/1721.1/164977" rel="alternate"/>
<author>
<name>Mkrtchyan, Mikayel</name>
</author>
<id>https://hdl.handle.net/1721.1/164977</id>
<updated>2026-02-28T03:02:13Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">Higher Siegel-Weil formulae over function fields
Mkrtchyan, Mikayel
In their seminal work, Feng-Yun-Zhang introduced function field analogues of Kudla-Rapoport cycles for moduli spaces of unitary shtukas, and initiated the study of their intersection theory. They proved a higher Siegel-Weil formula in the case of non-degenerate Fourier coefficients, relating the degrees of these cycles to higher derivatives of Siegel-Eisenstein series. In this thesis, we generalize their result in two directions: we 1) prove a higher Siegel-Weil formula for unitary groups for corank-1 degenerate coefficients, and 2) introduce analogous cycles on moduli spaces of symplectic shtukas, and prove a higher Siegel-Weil formula for such cycles in the non-degenerate case, relating their degrees to derivatives of Siegel-Eisenstein series on split orthogonal groups.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Diverse Array of Synthetic Strategies for Phosphorus Group Transfer Chemistry: From Phosphinidenes to Phosphates</title>
<link href="https://hdl.handle.net/1721.1/164976" rel="alternate"/>
<author>
<name>Xin, Tiansi</name>
</author>
<id>https://hdl.handle.net/1721.1/164976</id>
<updated>2026-02-28T03:02:21Z</updated>
<published>2026-02-01T00:00:00Z</published>
<summary type="text">A Diverse Array of Synthetic Strategies for Phosphorus Group Transfer Chemistry: From Phosphinidenes to Phosphates
Xin, Tiansi
This thesis compiles the published scientific contributions of Tiansi Xin. Chapter 1 consists of a brief collection of eulogies from friends and colleagues, reflecting on his life and time at the Massachusetts Institute of Technology. The subsequent chapters describe the development of novel synthetic methods for the transfer of phosphorus-containing moieties, specifically metaphosphates and phosphinidenes. The work presented here has significant implications for both the fundamental understanding and practical advancement of synthetic inorganic and organic chemistry. Chapters 2 and 3 address the sustainable production and processing of phosphoruscontaining chemicals, focusing on mechanochemical methods to synthesize reduced phosphorus species while circumventing the need to access hazardous white phosphorus as an intermediate. In particular, Chapter 2 describes a solvent-free mechanochemical approach to producing phosphite (HPO₃²⁻) via hydride-mediated reduction of condensed phosphates. Using potassium hydride, a range of inorganic phosphate sources—including pyrophosphate, triphosphate, trimetaphosphate, fluorophosphate, and polyphosphate—were converted to phosphite in moderate to high yields. Mechanistic studies identified overreduction pathways leading to hypophosphite and other low-oxidation P-species. Chapter 3 similarly applies this mechanochemical approach to phosphorus–carbon bond formation, reporting the phosphorylation of acetylides with condensed phosphates to afford phosphonates. Biogenic polyphosphates were also shown to be viable precursors, a proof-of-concept to closing the modern phosphorus cycle using recycled inputs. These results demonstrate the possibility of accessing organophosphorus chemicals directly from condensed phosphates and may offer an opportunity toward a “greener” phosphorus industry. Chapters 4 and 5 shift focus to phosphinidene transfer chemistry and the synthesis of novel phosphorus-containing heterocycles. This expands on previously published studies from the Cummins group on the chemistry of dibenzo-7-phosphanorbornadiene “RPA” reagents. Chapter 4 reports the preparation and structural characterization of iron–phosphido complexes relevant to phosphinidene group transfer catalysis and describes the development of an improved catalytic system based on a simple diiron precursor (Fp₂), enabling efficient synthesis of phosphiranes from electron-deficient alkenes. The mechanism was thoroughly experimentally and computationally interrogated. Chapter 5 describes the novel synthesis of free, uncomplexed phosphet-2-ones via phosphinidene transfer to cyclopropenones, with experimental and theoretical studies supporting a mechanism involving ketene-derived intermediates and transformations to additional phosphorus heterocycles through subsequent reactions.
</summary>
<dc:date>2026-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Host–Guest Complexation by β-Cyclodextrin Enhances the Solubility of an Esterified Protein</title>
<link href="https://hdl.handle.net/1721.1/164975" rel="alternate"/>
<author>
<name>Cheah, Keith M</name>
</author>
<author>
<name>Jun, Joomyung V</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<author>
<name>Raines, Ronald T</name>
</author>
<id>https://hdl.handle.net/1721.1/164975</id>
<updated>2026-02-27T04:16:04Z</updated>
<published>2022-08-29T00:00:00Z</published>
<summary type="text">Host–Guest Complexation by β-Cyclodextrin Enhances the Solubility of an Esterified Protein
Cheah, Keith M; Jun, Joomyung V; Wittrup, K Dane; Raines, Ronald T
The carboxyl groups of a protein can be esterified by reaction with a diazo compound, 2-diazo-2-(p-methylphenyl)-N,N-dimethylacetamide. This esterification enables the entry of the protein into the cytosol of a mammalian cell, where the nascent ester groups are hydrolyzed by endogenous esterases. The low aqueous solubility of the ensuing esterified protein is, however, a major practical challenge. Solubility screening revealed that β-cyclodextrin (β-CD) is an optimal solubilizing agent for esterified green fluorescent protein (est-GFP). Its addition can increase the recovery of est-GFP by 10-fold. α-CD, γ-CD, and cucurbit-7-uril are less effective excipients. 1H NMR titration experiments revealed that β-CD encapsulates the hydrophobic tolyl group of ester conjugates with Ka = 321 M–1. Combining l-arginine and sucrose with β-CD enables the nearly quantitative recovery of est-GFP. Thus, the insolubility of esterified proteins can be overcome with excipients.
</summary>
<dc:date>2022-08-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantifying the Role of Kinematic and Behavioral Features in Driver-Pedestrian Interaction across Environments: An Inverse Reinforcement Learning Approach</title>
<link href="https://hdl.handle.net/1721.1/164974" rel="alternate"/>
<author>
<name>Noonan, T Zach</name>
</author>
<author>
<name>Gershon, Pnina</name>
</author>
<author>
<name>Domeyer, Josh</name>
</author>
<author>
<name>Mehler, Bruce</name>
</author>
<author>
<name>Reimer, Bryan</name>
</author>
<id>https://hdl.handle.net/1721.1/164974</id>
<updated>2026-02-27T04:16:16Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Quantifying the Role of Kinematic and Behavioral Features in Driver-Pedestrian Interaction across Environments: An Inverse Reinforcement Learning Approach
Noonan, T Zach; Gershon, Pnina; Domeyer, Josh; Mehler, Bruce; Reimer, Bryan
This study examined real-world driver-pedestrian encounters to identify key interaction features and assess how the importance of these features is mediated by protection afforded by the environment. Using inverse reinforcement learning, we estimated the utility functions to evaluate the relative importance of different aspects of the interaction for each road user and how they differ between undesignated (e.g., jaywalking) and designated (e.g., zebra crossings) crossings. Pedestrian pausing behavior and dynamic features like acceleration changes and time gaps were important at designated crossings, whereas undesignated crossings relied on distances and bidirectional gaze, highlighting reliance on non-verbal cues. This work builds on previous studies analyzing the role of environmental features on interaction, communication, and negotiation between drivers and pedestrians. Understanding driver-pedestrian communication and identifying the most important interaction features may enhance the design of effective and coordinated driver-pedestrian interaction strategies, especially in the context of automated driving systems.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Preoperative Function, Previous SERM Treatment, and Triple-Negative Tumor Status are Independently Associated With 3-Month Postoperative Function After Surgical Decompression of Metastatic Breast Cancer</title>
<link href="https://hdl.handle.net/1721.1/164973" rel="alternate"/>
<author>
<name>Siraj, Layla</name>
</author>
<author>
<name>Duvall, Julia B.</name>
</author>
<author>
<name>Massaad, Elie</name>
</author>
<author>
<name>Fourman, Mitchell S.</name>
</author>
<author>
<name>Shin, John H.</name>
</author>
<id>https://hdl.handle.net/1721.1/164973</id>
<updated>2026-02-27T04:16:12Z</updated>
<published>2025-11-04T00:00:00Z</published>
<summary type="text">Preoperative Function, Previous SERM Treatment, and Triple-Negative Tumor Status are Independently Associated With 3-Month Postoperative Function After Surgical Decompression of Metastatic Breast Cancer
Siraj, Layla; Duvall, Julia B.; Massaad, Elie; Fourman, Mitchell S.; Shin, John H.
Background:&#13;
The most common cancer in women worldwide, breast cancer most often metastasizes to the bone. Improved chemo- and radiotherapies and novel molecular therapies have prolonged survival in women with osseous metastatic breast cancer, but spinal metastases often cause cord compression that degrades their functional independence.&#13;
Purpose:&#13;
In women with breast cancer metastasized to the spine, we sought to (1) identify independent predictors of a functional deficit 3 months after surgical management and (2) assess the utility of existing metrics at highlighting patients at risk of a postoperative functional deficit.&#13;
Methods:&#13;
We performed a single-institution, retrospective analysis of 92 patients meeting our inclusion criteria between 2004 and 2021. Patients were classified by 3-month postoperative Eastern Cooperative Oncology Group (ECOG) scores into good/independent (ECOG 0 to 2) and poor/dependent (ECOG 3 to 5) functional outcome groups. Univariate and multivariate analyses were performed to identify patient and tumor factors associated with good vs. poor 3-month ECOG scores.&#13;
Results:&#13;
Preoperative use of selective estrogen receptor modulators (SERMs) was significantly associated with good postoperative functional outcomes. Poor preoperative function, the presence of visceral metastases at the time of surgery, and triple-negative primary or metastatic tumor status were independently associated with poor 3-month postoperative function. Host characteristics, sociodemographic factors, and indicators of surgical complexity, including estimated blood loss, front/back surgery, and corpectomy reconstruction, were not associated with 3-month ECOG score. A multivariate model including these significant univariate associations and normalized for patient demographics identified preoperative SERM use, poor preoperative function (ECOG score), and triple-negative primary or metastatic tumor status as independently associated with functional status 3 months after surgery.&#13;
Conclusions:&#13;
Our retrospective analysis found that preoperative SERM use was significantly associated with improved postoperative functional outcomes, while poor preoperative function and triple-negative tumor status were significantly associated with poor function 3 months after surgery. These factors may serve as indicators of function and independence after surgery for patients with metastatic breast cancer to the spine.&#13;
Level of Evidence:&#13;
Level IV: Prognostic Study
</summary>
<dc:date>2025-11-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Influence of Prior Semantic Knowledge in Noisy Channel Interpretation</title>
<link href="https://hdl.handle.net/1721.1/164972" rel="alternate"/>
<author>
<name>Chen, Sihan</name>
</author>
<author>
<name>Washington, Lia</name>
</author>
<author>
<name>Gibson, Edward</name>
</author>
<id>https://hdl.handle.net/1721.1/164972</id>
<updated>2026-02-27T04:16:13Z</updated>
<published>2025-09-25T00:00:00Z</published>
<summary type="text">The Influence of Prior Semantic Knowledge in Noisy Channel Interpretation
Chen, Sihan; Washington, Lia; Gibson, Edward
How do comprehenders interpret semantically implausible sentences? Previous studies proposed a noisy-channel framework of sentence comprehension, where communication between a speaker and a comprehender happens in a noisy channel. The comprehender rationally adopts an interpretation of a sentence based on how likely the interpretation is (the semantic prior) and how likely is the interpretation corrupted into the perceived sentence because of noise (the likelihood). The theory predicted that comprehenders would be more likely to adopt a literal interpretation of an implausible sentence if their prior of implausible sentences were higher. To test this hypothesis, Gibson et al. manipulated the proportion of implausible test sentences in two sets of experiments, where participants read a number of sentences and answer a comprehension question following each sentence. Although their results supported the hypothesis, the experiment could be confounded (a) by participants’ adaptation effect (due to different experiment lengths) and (b) by different participants having different strategies to do the task (due to the between-subject design). In our study, we manipulated the semantic prior and controlled for these potential confounds. We found participants exposed to more implausible sentences were indeed more likely to interpret implausible sentences literally. Our results hence offer additional support for the noisy-channel framework.
</summary>
<dc:date>2025-09-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Politics of Engagement in Platform Governance</title>
<link href="https://hdl.handle.net/1721.1/164971" rel="alternate"/>
<author>
<name>Lewis, Becca</name>
</author>
<author>
<name>Christin, Angèle</name>
</author>
<id>https://hdl.handle.net/1721.1/164971</id>
<updated>2026-02-27T04:16:11Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">The Politics of Engagement in Platform Governance
Lewis, Becca; Christin, Angèle
In recent years, the concept of user engagement has dominated debate over the governance of online platforms, and critics use the term to assign crass commercial interests to social media companies. We argue that social media engagement is a multifaceted ideal that serves both economic and ideological functions for platforms. We show how Facebook’s early leadership used the concept to reconcile the competing demands of expansion, revenue generation, and community-building. In doing so, they synthesized three distinct ideas: the Silicon Valley belief that network expansion correlated with network strength, the ad industry’s contention that media should promote emotional investment from viewers, and the academic claim that civic participation is the most important democratic virtue. Even as the contradictions that these claims yield have come to the foreground, the multiple logics of engagement have proven difficult to evade, and it continues to shape discussions of platform governance.
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Impact of Electrification and Partial Automation on Driver Speeding Behavior</title>
<link href="https://hdl.handle.net/1721.1/164970" rel="alternate"/>
<author>
<name>Gershon, Pnina</name>
</author>
<author>
<name>Noonan, T Zach</name>
</author>
<author>
<name>Lenneman, John</name>
</author>
<id>https://hdl.handle.net/1721.1/164970</id>
<updated>2026-02-27T04:16:15Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">The Impact of Electrification and Partial Automation on Driver Speeding Behavior
Gershon, Pnina; Noonan, T Zach; Lenneman, John
As electric vehicles (EVs) and partial automation systems become increasingly prevalent, their impact on everyday driving behavior remains underexplored. This study utilizes real-world naturalistic data to examine how vehicle type, an electric versus an internal combustion engine (ICE), and the use of partial automation are associated with speeding behavior. Data were collected from 24 drivers over the course of a month each, comparing Tesla Model 3s with Autopilot (EV) and Cadillac CT6s with Super Cruise (ICE), covering about 38,000 miles of driving. Results indicate that EV drivers tended to speed for shorter durations on arterial roads but exhibited higher speeding magnitudes on residential and controlled access roads after their first week of driving. Notably, driving with partial automation, regardless of powertrain, was associated with significantly longer speeding durations and slightly greater speeding magnitudes compared to manual driving. These findings suggest that both electrification and automation contribute to evolving driver behaviors, changing speeding behavior in specific driving contexts. As drivers adapt to new vehicle technologies, understanding how these systems shape behavior is important. Insights from this study may inform the design of future in-vehicle systems and guide driver education strategies to promote safe driving practices in an evolving transportation landscape.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cloud Capitalism and the AI Transition</title>
<link href="https://hdl.handle.net/1721.1/164969" rel="alternate"/>
<author>
<name>Tan, JS</name>
</author>
<author>
<name>Thelen, Kathleen</name>
</author>
<id>https://hdl.handle.net/1721.1/164969</id>
<updated>2026-02-27T04:16:14Z</updated>
<published>2025-12-26T00:00:00Z</published>
<summary type="text">Cloud Capitalism and the AI Transition
Tan, JS; Thelen, Kathleen
This article explores the origins and implications of a new cloud business model that is powering the advance of AI. We document how this model emerged within a handful of the most dominant IT firms whose reach into all corners of the economy makes them a powerful node or “choke point” in the political economy as a whole. We then elaborate how the features of the cloud business model differ from the traditional platform model out of which it grew, as it evolved from asset-light to asset-heavy, from hierarchical organization to semivertical integration, from domination over to collaboration with partner firms, and from embracing consumer- to enterprise-facing strategies. A final section considers the technological, political, and distributional impacts of the rise of this new business model—showing how the current race to artificial general intelligence (AGI) has reinforced and accelerated its underlying dynamics (above all, intensifying the drive for scale and ever-greater asset intensity), analyzing the new techno-nationalist alliance between industry leaders and the state that the model's development has inspired, and considering the new power-distributional dynamics this model has produced.
</summary>
<dc:date>2025-12-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, Vice President for Research</title>
<link href="https://hdl.handle.net/1721.1/164968" rel="alternate"/>
<author>
<name>Waitz, Ian A</name>
</author>
<id>https://hdl.handle.net/1721.1/164968</id>
<updated>2026-02-27T04:17:20Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, Vice President for Research
Waitz, Ian A
This report contains the following sections: Overview, Research Administration, Research Compliance, Office of Research Computing and Data, International Scholars Office, Postdoctoral Services, OVPR Administration, and Lab and Center Leadership.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hexamethylbenzene Elimination Enables the Generation of Transient, Sterically Unhindered Multiply Bonded Boron Species</title>
<link href="https://hdl.handle.net/1721.1/164967" rel="alternate"/>
<author>
<name>Zhang, Chonghe</name>
</author>
<author>
<name>Dabringhaus,  Philipp</name>
</author>
<author>
<name>Tra,  Bi Youan E.</name>
</author>
<author>
<name>Gilliard, Robert J. Jr</name>
</author>
<author>
<name>Cummins, Christopher C.</name>
</author>
<id>https://hdl.handle.net/1721.1/164967</id>
<updated>2026-02-27T04:16:10Z</updated>
<published>2025-05-16T00:00:00Z</published>
<summary type="text">Hexamethylbenzene Elimination Enables the Generation of Transient, Sterically Unhindered Multiply Bonded Boron Species
Zhang, Chonghe; Dabringhaus,  Philipp; Tra,  Bi Youan E.; Gilliard, Robert J. Jr; Cummins, Christopher C.
We present a method for the generation of boron-containing unsaturated small molecules via hexamethylbenzene elimination. The fragmentation precursors are obtained through bond insertion into phenyl boranorbornadiene (PhB(C6Me6), 1). Compound 1 undergoes 1,1-insertion with 2,6-xylyl isocyanide, affording a boron-doped bicyclo[2.2.2]octa-2,5-diene 2. Heating 2 in toluene results in the formation of a base-stabilized boraketenimine PhB(CNxyl)2 (i.e., borylene diisocyanide) as an intermediate via retro-Diels–Alder reaction. Surprisingly, PhB(CNxyl)2 dimerizes to give a boron-doped 6-membered ring (PhB)2C4(CNxyl)64. The reaction of 1 with trimethylamine N-oxide and phenyl azide yields triphenyl boroxine and a BN4 ring, respectively, implying the involvement of transient oxoborane (PhB[triple bond, length as m-dash]O) and iminoborane intermediates (PhB[triple bond, length as m-dash]NPh), respectively. Furthermore, boranorbornadiene also undergoes 2,3-insertion with mesityl isocyanate (MesNCO), affording a fused 6/5-membered heterocycle 11. This insertion profile is analogous to the insertion of phenyl azide into 1.
</summary>
<dc:date>2025-05-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mechanisms and Scale-up Potential of 3D Solar Interfacial-Evaporators</title>
<link href="https://hdl.handle.net/1721.1/164966" rel="alternate"/>
<author>
<name>Zhang,  James H.</name>
</author>
<author>
<name>Mittapally, Rohith</name>
</author>
<author>
<name>Oluwade,  Abimbola</name>
</author>
<author>
<name>Chen, Gang</name>
</author>
<id>https://hdl.handle.net/1721.1/164966</id>
<updated>2026-02-27T04:16:06Z</updated>
<published>2025-04-24T00:00:00Z</published>
<summary type="text">Mechanisms and Scale-up Potential of 3D Solar Interfacial-Evaporators
Zhang,  James H.; Mittapally, Rohith; Oluwade,  Abimbola; Chen, Gang
Evaporation fluxes from porous evaporators under sunlight have been reported to exceed the solar-thermal limit, determined by relating the incoming solar energy to the latent and sensible heat of water, for applications in desalination and brine pond drying. Although flat two-dimensional (2D) evaporators exceeding the solar limit imply a non-thermal process, tall three-dimensional (3D) solar evaporators can exceed it by absorbing additional environmental heat into its cold sidewalls. Through modeling, we explain the physics and identify the critical heights in which a fin transitions from 2D to 3D evaporation and exceeds the solar-thermal limit. Our analyses illustrate that environmental heat absorption in 3D evaporators is determined by the ambient relative humidity and the airflow velocity. The model is then coarse-grained into a large-scale fin array device on the meters scale to analyze their scalability. We identify that these devices are unlikely to scale favorably in closed environment settings such as solar stills. Our modeling clearly illustrates the benefits and limitations of 3D evaporating arrays and pinpoints design choices in previous works that hinder the device's overall performance. This work illustrates the importance in distinguishing 2D from 3D evaporation for mechanisms underlying interfacial evaporation exceeding the solar-thermal limit.
</summary>
<dc:date>2025-04-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Decarbonization Approaches for Ethylene Production: Comparative Techno-Economic and Life-Cycle Analysis</title>
<link href="https://hdl.handle.net/1721.1/164965" rel="alternate"/>
<author>
<name>Shin, Woojae</name>
</author>
<author>
<name>Lin, Bosong</name>
</author>
<author>
<name>Lai, Haoxiang</name>
</author>
<author>
<name>Ibrahima, Gasim</name>
</author>
<author>
<name>Zang, Guiyan</name>
</author>
<id>https://hdl.handle.net/1721.1/164965</id>
<updated>2026-02-27T04:16:09Z</updated>
<published>2025-02-18T00:00:00Z</published>
<summary type="text">Decarbonization Approaches for Ethylene Production: Comparative Techno-Economic and Life-Cycle Analysis
Shin, Woojae; Lin, Bosong; Lai, Haoxiang; Ibrahima, Gasim; Zang, Guiyan
Ethylene, a building block of the chemical industry, significantly contributes to global greenhouse gas (GHG) emissions, prompting interest in decarbonization approaches to align with recent carbon neutrality initiatives. This paper presents a comprehensive techno-economic analysis (TEA) and life cycle analysis (LCA) of GHG emissions, comparing conventional ethane-based ethylene plants with three decarbonization approaches. The study was conducted within the context of the U.S. average, with sensitivity analysis to identify key drivers affecting well-to-gate (WTG) GHG emissions and the levelized cost of ethylene (LCOE). The conventional plant exhibited a GHG emission of 869 kgCO2e per tonne-ethylene and a LCOE of $746 per tonne-ethylene. Substituting external natural gas fuels with grid or renewable electricity decreased the emissions to 806 and 717 kgCO2e per tonne-ethylene, respectively. The emissions of the grid-powered or renewable-powered electrically heated cracker that exports co-produced hydrogen to substitute conventional gray hydrogen were 1031 and −163 kgCO2e per tonne-ethylene, respectively. The application of CCS to purge gas showed 703 and 514 kgCO2e per tonne-ethylene emissions, respectively. The electric cracker showed lower emissions than the conventional plant below 380 kgCO2e per MW h electricity upstream, and at 60 kgCO2e per MW h, it achieved carbon neutrality. Regarding LCOE, when using a grid electricity source, no external natural gas, electric cracker, and adding CCS to purge gas showed $743, 833, and 771 per tonne-ethylene, respectively. When these plants adopt renewable electricity, their LCOEs will be $737, 746 and 757 per tonne-ethylene. Below $41.1 per MW h electricity price, the electric cracker had the lowest value among all cases. With hydrogen prices of $0.5–3.0 per kg-H2, the electric cracker's LCOE ranged from −$45(cost)–128(saving) per tonne-ethylene compared to the conventional concept.
</summary>
<dc:date>2025-02-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Archerfish: A Retrofitted 3D Printer for High-throughput Combinatorial Experimentation via Continuous Printing</title>
<link href="https://hdl.handle.net/1721.1/164964" rel="alternate"/>
<author>
<name>Alexander E. Siemenn,   Basita Das, Eunice Aissi, Fang Sheng, Lleyton Elliott, Blake Hudspeth, Marilyn Meyers, James Serdy and Tonio Buonassisi</name>
</author>
<id>https://hdl.handle.net/1721.1/164964</id>
<updated>2026-02-27T04:16:03Z</updated>
<published>2025-01-31T00:00:00Z</published>
<summary type="text">Archerfish: A Retrofitted 3D Printer for High-throughput Combinatorial Experimentation via Continuous Printing
Alexander E. Siemenn,   Basita Das, Eunice Aissi, Fang Sheng, Lleyton Elliott, Blake Hudspeth, Marilyn Meyers, James Serdy and Tonio Buonassisi
The maturation of 3D printing technology has enabled low-cost, rapid prototyping capabilities for mainstreaming accelerated product design. The materials research community has recognized this need, but no universally accepted rapid prototyping technique currently exists for material design. Toward this end, we develop Archerfish, a 3D printer retrofitted to dispense liquid with in situ mixing capabilities for performing high-throughput combinatorial printing (HTCP) of material compositions. Using this HTCP design, we demonstrate continuous printing throughputs of up to 250 unique compositions per minute, 100× faster than similar tools such as Opentrons that utilize stepwise printing with ex situ mixing. We validate the formation of these combinatorial “prototype” material gradients using hyperspectral image analysis and energy-dispersive X-ray spectroscopy. Furthermore, we describe hardware challenges to realizing reproducible, accurate, and precise composition gradients with continuous printing, including those related to precursor dispensing, mixing, and deposition. Despite these limitations, the continuous printing and low-cost design of Archerfish demonstrate promising accelerated materials screening results across a range of materials systems from nanoparticles to perovskites.
</summary>
<dc:date>2025-01-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Borinine-FLP Ring Expansion: Isolation of Eight-Membered B-P Rings Bridged by µ2 Chalcogenide and Chloronium Ions</title>
<link href="https://hdl.handle.net/1721.1/164963" rel="alternate"/>
<author>
<name>Frey, Nathan C.</name>
</author>
<author>
<name>Sarkar,  Samir Kumar</name>
</author>
<author>
<name>Dickie, Diane A.</name>
</author>
<author>
<name>Molinoa, Andrew</name>
</author>
<author>
<name>Gilliard, Robert J. Jr</name>
</author>
<id>https://hdl.handle.net/1721.1/164963</id>
<updated>2026-02-27T04:15:52Z</updated>
<published>2025-05-10T00:00:00Z</published>
<summary type="text">Borinine-FLP Ring Expansion: Isolation of Eight-Membered B-P Rings Bridged by µ2 Chalcogenide and Chloronium Ions
Frey, Nathan C.; Sarkar,  Samir Kumar; Dickie, Diane A.; Molinoa, Andrew; Gilliard, Robert J. Jr
Boron–phosphorus (B–P) frustrated Lewis pairs (FLPs) are an important class of compounds for activating various small molecules. Utilizing the ring expansion reactivity of 9-chloro-9-borafluorene, a borinine-based FLP was synthesized. Various five-membered main-group element heterocycles were obtained via the reaction of the FLP with Me3NO, S8, and Se. Subsequent reduction of these species yielded the ring-expanded compounds, each featuring bridging B–E–B (E = O, S, Se) bonds. Similarly, halide abstraction from the FLP with AgNTf2 led to the formation of a cationic ring-expanded compound with a bridging B–Cl–B motif. This motif constitutes one of the first examples of a boron-stabilized chloronium ion, as verified using in-depth bonding analysis methods. Mechanistic pathways for the reduction- and halide abstraction-mediated ring expansion reactions are proposed with the aid of density functional theory. Electronic structure computations were performed to determine the best representation of bonding interactions in each compound, suggesting phosophorus(V)–chalcogen double bonding and chalcogen–boron(III) dative interactions within the heterocycles.
</summary>
<dc:date>2025-05-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>High-resolution structure of Zn3(HOTP)2 (HOTP = hexaoxidotriphenylene), a three-dimensional conductive MOF</title>
<link href="https://hdl.handle.net/1721.1/164962" rel="alternate"/>
<author>
<name>Zhang,  Kimberly J.</name>
</author>
<author>
<name>Chen, Tianyang</name>
</author>
<author>
<name>Oppenheim, Julius J.</name>
</author>
<author>
<name>Yang,  Luming</name>
</author>
<author>
<name>Palatinus,  Lukáš</name>
</author>
<author>
<name>Müller,  Peter</name>
</author>
<author>
<name>Van Voorhisa,  Troy</name>
</author>
<author>
<name>Dincă,  Mircea</name>
</author>
<id>https://hdl.handle.net/1721.1/164962</id>
<updated>2026-02-27T04:16:01Z</updated>
<published>2025-06-02T00:00:00Z</published>
<summary type="text">High-resolution structure of Zn3(HOTP)2 (HOTP = hexaoxidotriphenylene), a three-dimensional conductive MOF
Zhang,  Kimberly J.; Chen, Tianyang; Oppenheim, Julius J.; Yang,  Luming; Palatinus,  Lukáš; Müller,  Peter; Van Voorhisa,  Troy; Dincă,  Mircea
Although two-dimensional (2D) electrically conducting metal–organic frameworks (cMOFs) have become prominent due to their numerous potential applications, their structures are often implied or assumed from rather crude powder X-ray diffraction data. Indeed, exceedingly few examples exist of atomic-level structural details coming from single crystal diffraction experiments. Most widely studied among cMOFs are materials based on triphenylene ligands, in particular M3(HOTP)2 (M = Cu, Zn) and [M3(HOTP)2][M3(HOTP)]2 (M = Mg, Ni, Co; H6HOTP = 2,3,6,7,10,11-hexahydroxytriphenylene), which are invariably described as 2D van der Waals materials with sheets of ligands connected by square planar or octahedral metal ions. Here, we employ electron diffraction to show that, unlike the Mg, Co, Ni, and Cu analogs, Zn3(HOTP)2 crystallizes into a three-dimensional network that is analogous to the structures of the lanthanide-based HOTP MOFs. Moreover, similar to the lanthanide frameworks, Zn3(HOTP)2 exhibits incommensurate modulation, likely originating from a frustration between the preferred π–π stacking distance and the Zn–O bond lengths, or from a Peierls distortion. This work reinforces the importance of employing single crystal diffraction measurements for the characterization of conductive MOFs, especially when trying to correlate electronic properties to structural details.
</summary>
<dc:date>2025-06-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Intratumoral nanobody–IL-2 fusions that bind the tumor extracellular matrix suppress solid tumor growth in mice</title>
<link href="https://hdl.handle.net/1721.1/164961" rel="alternate"/>
<author>
<name>Lutz, Emi A</name>
</author>
<author>
<name>Jailkhani, Noor</name>
</author>
<author>
<name>Momin, Noor</name>
</author>
<author>
<name>Huang, Ying</name>
</author>
<author>
<name>Sheen, Allison</name>
</author>
<author>
<name>Kang, Byong H</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<author>
<name>Hynes, Richard O</name>
</author>
<id>https://hdl.handle.net/1721.1/164961</id>
<updated>2026-02-26T03:07:36Z</updated>
<published>2022-11-01T00:00:00Z</published>
<summary type="text">Intratumoral nanobody–IL-2 fusions that bind the tumor extracellular matrix suppress solid tumor growth in mice
Lutz, Emi A; Jailkhani, Noor; Momin, Noor; Huang, Ying; Sheen, Allison; Kang, Byong H; Wittrup, K Dane; Hynes, Richard O
Confining cytokine exposure to the tumors would greatly enhance cancer immunotherapy safety and efficacy. Immunocytokines, cytokines fused to tumor-targeting antibodies, have been developed with this intention, but without significant clinical success to date. A critical limitation is uptake by receptor-expressing cells in the blood, that decreases the dose at the tumor and engenders toxicity. Small-format immunocytokines, constructed with antibody fragments, are hypothesized to improve tumor specificity due to rapid systemic clearance. However, effective design criteria for small-format immunocytokines need further examination. Here, we engineer small interleukin-2 (IL-2) immunocytokines fused to nanobodies with nanomolar to picomolar affinities for the tumor-specific EIIIB domain of fibronectin (also known as EDB). Upon intravenous delivery into immunocompetent mice, such immunocytokines led to similar tumor growth delay as size-matched untargeted IL-2. Intratumoral (i.t.) delivery imparted improved survival dependent on affinity to EIIIB. I.t. administration offers a promising avenue to deliver small-format immunocytokines, given effective affinity for the tumor microenvironment.
</summary>
<dc:date>2022-11-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ablative radiotherapy improves survival but does not cure autochthonous mouse models of prostate and colorectal cancer</title>
<link href="https://hdl.handle.net/1721.1/164960" rel="alternate"/>
<author>
<name>Schmidt, Daniel R</name>
</author>
<author>
<name>Gramatikov, Iva Monique T</name>
</author>
<author>
<name>Sheen, Allison</name>
</author>
<author>
<name>Williams, Christopher L</name>
</author>
<author>
<name>Hurwitz, Martina</name>
</author>
<author>
<name>Dodge, Laura E</name>
</author>
<author>
<name>Holupka, Edward</name>
</author>
<author>
<name>Kiger, WS</name>
</author>
<author>
<name>Cornwall-Brady, Milton R</name>
</author>
<author>
<name>Huang, Wei</name>
</author>
<author>
<name>Mak, Howard H</name>
</author>
<author>
<name>Cormier, Kathleen S</name>
</author>
<author>
<name>Condon, Charlene</name>
</author>
<author>
<name>Dane Wittrup, K</name>
</author>
<author>
<name>Yilmaz, Ömer H</name>
</author>
<author>
<name>Stevenson, Mary Ann</name>
</author>
<author>
<name>Down, Julian D</name>
</author>
<author>
<name>Floyd, Scott R</name>
</author>
<author>
<name>Roper, Jatin</name>
</author>
<author>
<name>Vander Heiden, Matthew G</name>
</author>
<id>https://hdl.handle.net/1721.1/164960</id>
<updated>2026-02-26T03:07:27Z</updated>
<published>2023-08-09T00:00:00Z</published>
<summary type="text">Ablative radiotherapy improves survival but does not cure autochthonous mouse models of prostate and colorectal cancer
Schmidt, Daniel R; Gramatikov, Iva Monique T; Sheen, Allison; Williams, Christopher L; Hurwitz, Martina; Dodge, Laura E; Holupka, Edward; Kiger, WS; Cornwall-Brady, Milton R; Huang, Wei; Mak, Howard H; Cormier, Kathleen S; Condon, Charlene; Dane Wittrup, K; Yilmaz, Ömer H; Stevenson, Mary Ann; Down, Julian D; Floyd, Scott R; Roper, Jatin; Vander Heiden, Matthew G
Background&#13;
Genetically engineered mouse models (GEMMs) of cancer are powerful tools to study mechanisms of disease progression and therapy response, yet little is known about how these models respond to multimodality therapy used in patients. Radiation therapy (RT) is frequently used to treat localized cancers with curative intent, delay progression of oligometastases, and palliate symptoms of metastatic disease.&#13;
&#13;
Methods&#13;
Here we report the development, testing, and validation of a platform to immobilize and target tumors in mice with stereotactic ablative RT (SART). Xenograft and autochthonous tumor models were treated with hypofractionated ablative doses of radiotherapy.&#13;
&#13;
Results&#13;
We demonstrate that hypofractionated regimens used in clinical practice can be effectively delivered in mouse models. SART alters tumor stroma and the immune environment, improves survival in GEMMs of primary prostate and colorectal cancer, and synergizes with androgen deprivation in prostate cancer. Complete pathologic responses were achieved in xenograft models, but not in GEMMs.&#13;
&#13;
Conclusions&#13;
While SART is capable of fully ablating xenografts, it is unable to completely eradicate disease in GEMMs, arguing that resistance to potentially curative therapy can be modeled in GEMMs.&#13;
&#13;
Plain language summary&#13;
Mice can be used to model the types of cancer seen in people to investigate the effects of cancer therapies, such as radiation. Here, we apply radiation therapy treatments that are able to cure cancer in humans to mice that have cancer of the prostate or colorectum. We show that the mice do not experience many side effects and that the tumours reduce in size, but in some cases show progression after treatment. Our study demonstrates that mice can be used to better understand how human cancers respond to radiation treatment, which can lead to the development of improved treatments and treatment schedules.
</summary>
<dc:date>2023-08-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Anti–PD-1 and Extended Half-life IL2 Synergize for Treatment of Murine Glioblastoma Independent of Host MHC Class I Expression</title>
<link href="https://hdl.handle.net/1721.1/164959" rel="alternate"/>
<author>
<name>Tritz, Zachariah P</name>
</author>
<author>
<name>Ayasoufi, Katayoun</name>
</author>
<author>
<name>Wolf, Delaney M</name>
</author>
<author>
<name>Owens, Carley A</name>
</author>
<author>
<name>Malo, Courtney S</name>
</author>
<author>
<name>Himes, Benjamin T</name>
</author>
<author>
<name>Fain, Cori E</name>
</author>
<author>
<name>Goddery, Emma N</name>
</author>
<author>
<name>Yokanovich, Lila T</name>
</author>
<author>
<name>Jin, Fang</name>
</author>
<author>
<name>Hansen, Michael J</name>
</author>
<author>
<name>Parney, Ian F</name>
</author>
<author>
<name>Wang, Chensu</name>
</author>
<author>
<name>Moynihan, Kelly D</name>
</author>
<author>
<name>Irvine, Darrell J</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<author>
<name>Diaz Marcano, Rosa M</name>
</author>
<author>
<name>Vile, Richard G</name>
</author>
<author>
<name>Johnson, Aaron J</name>
</author>
<id>https://hdl.handle.net/1721.1/164959</id>
<updated>2026-02-26T03:07:45Z</updated>
<published>2023-06-02T00:00:00Z</published>
<summary type="text">Anti–PD-1 and Extended Half-life IL2 Synergize for Treatment of Murine Glioblastoma Independent of Host MHC Class I Expression
Tritz, Zachariah P; Ayasoufi, Katayoun; Wolf, Delaney M; Owens, Carley A; Malo, Courtney S; Himes, Benjamin T; Fain, Cori E; Goddery, Emma N; Yokanovich, Lila T; Jin, Fang; Hansen, Michael J; Parney, Ian F; Wang, Chensu; Moynihan, Kelly D; Irvine, Darrell J; Wittrup, K Dane; Diaz Marcano, Rosa M; Vile, Richard G; Johnson, Aaron J
Glioblastoma (GBM) is the most common malignant brain tumor in adults, responsible for approximately 225,000 deaths per year. Despite preclinical successes, most interventions have failed to extend patient survival by more than a few months. Treatment with anti—programmed cell death protein 1 (anti–PD-1) immune checkpoint blockade (ICB) monotherapy has been beneficial for malignant tumors such as melanoma and lung cancers but has yet to be effectively employed in GBM. This study aimed to determine whether supplementing anti–PD-1 ICB with engineered extended half-life IL2, a potent lymphoproliferative cytokine, could improve outcomes. This combination therapy, subsequently referred to as enhanced checkpoint blockade (ECB), delivered intraperitoneally, reliably cures approximately 50% of C57BL/6 mice bearing orthotopic GL261 gliomas and extends median survival of the treated cohort. In the CT2A model, characterized as being resistant to CBI, ECB caused a decrease in CT2A tumor volume in half of measured animals similar to what was observed in GL261-bearing mice, promoting a trending survival increase. ECB generates robust immunologic responses, features of which include secondary lymphoid organ enlargement and increased activation status of both CD4 and CD8 T cells. This immunity is durable, with long-term ECB survivors able to resist GL261 rechallenge. Through employment of depletion strategies, ECB's efficacy was shown to be independent of host MHC class I–restricted antigen presentation but reliant on CD4 T cells. These results demonstrate ECB is efficacious against the GL261 glioma model through an MHC class I–independent mechanism and supporting further investigation into IL2-supplemented ICB therapies for tumors of the central nervous system.
</summary>
<dc:date>2023-06-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Collagen-Anchored Interleukin-2 and Interleukin-12 Safely Reprogram the Tumor Microenvironment in Canine Soft-Tissue Sarcomas</title>
<link href="https://hdl.handle.net/1721.1/164958" rel="alternate"/>
<author>
<name>Stinson, Jordan A</name>
</author>
<author>
<name>Sheen, Allison</name>
</author>
<author>
<name>Momin, Noor</name>
</author>
<author>
<name>Hampel, Jordan</name>
</author>
<author>
<name>Bernstein, Rebecca</name>
</author>
<author>
<name>Kamerer, Rebecca</name>
</author>
<author>
<name>Fadl-Alla, Bahaa</name>
</author>
<author>
<name>Samuelson, Jonathan</name>
</author>
<author>
<name>Fink, Elizabeth</name>
</author>
<author>
<name>Fan, Timothy M</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<id>https://hdl.handle.net/1721.1/164958</id>
<updated>2026-02-26T03:07:43Z</updated>
<published>2023-06-01T00:00:00Z</published>
<summary type="text">Collagen-Anchored Interleukin-2 and Interleukin-12 Safely Reprogram the Tumor Microenvironment in Canine Soft-Tissue Sarcomas
Stinson, Jordan A; Sheen, Allison; Momin, Noor; Hampel, Jordan; Bernstein, Rebecca; Kamerer, Rebecca; Fadl-Alla, Bahaa; Samuelson, Jonathan; Fink, Elizabeth; Fan, Timothy M; Wittrup, K Dane
Purpose:&#13;
Cytokine therapies such as IL2 and IL12 suffer from impractically small therapeutic windows driven by their on-target, off-tumor activity, limiting their clinical potential despite potent antitumor effects. We previously engineered cytokines that bind and anchor to tumor collagen following intratumoral injection, and sought to test their safety and biomarker activity in spontaneous canine soft-tissue sarcomas (STS).&#13;
&#13;
Experimental Design:&#13;
Collagen-binding cytokines were canine-ized to minimize immunogenicity and were used in a rapid dose-escalation study in healthy beagles to identify a maximum tolerated dose. Ten client-owned pet dogs with STS were then enrolled into trial, receiving cytokines at different intervals prior to surgical tumor excision. Tumor tissue was analyzed through IHC and NanoString RNA profiling for dynamic changes within treated tumors. Archived, untreated STS samples were analyzed in parallel as controls.&#13;
&#13;
Results:&#13;
Intratumorally administered collagen-binding IL2 and IL12 were well tolerated by STS-bearing dogs, with only Grade 1/2 adverse events observed (mild fever, thrombocytopenia, neutropenia). IHC revealed enhanced T-cell infiltrates, corroborated by an enhancement in gene expression associated with cytotoxic immune function. We found concordant increases in expression of counter-regulatory genes that we hypothesize would contribute to a transient antitumor effect, and confirmed in mouse models that combination therapy to inhibit this counter-regulation can improve responses to cytokine therapy.&#13;
&#13;
Conclusions:&#13;
These results support the safety and activity of intratumorally delivered, collagen-anchoring cytokines for inflammatory polarization of the canine STS tumor microenvironment. We are further evaluating the efficacy of this approach in additional canine cancers, including oral malignant melanoma.&#13;
&#13;
Translational Relevance&#13;
Successful translation of novel cancer therapies could be accelerated through the inclusion of tumor models that accurately recapitulate natural evolution and malignant transformation processes operative in human tumor development. Spontaneous cancer in pet dogs provides an underutilized opportunity to assess the safety and activity of investigational cancer therapies in tumors that arise following years of immunoediting. Particularly for the evaluation of immunotherapies, canine tumors enable the assessment of clinical potential in the context of an experienced, and often senescent, immune background. Beyond efficacy, such evaluation provides meaningful insight into tumor resistance mechanisms that could influence eventual human clinical success. Herein, we characterize immune activities generated by intratumoral injections of engineered collagen-binding cytokines IL2 and IL12 into naturally occurring canine soft-tissue sarcomas, and demonstrate through comparative assessment in mouse tumors the differential learnings from each model and their combined role in guiding rational design of treatment combinations with greater expected efficacy.
</summary>
<dc:date>2023-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Both intratumoral regulatory T cell depletion and CTLA-4 antagonism are required for maximum efficacy of anti-CTLA-4 antibodies</title>
<link href="https://hdl.handle.net/1721.1/164957" rel="alternate"/>
<author>
<name>Lax, Brianna M</name>
</author>
<author>
<name>Palmeri, Joseph R</name>
</author>
<author>
<name>Lutz, Emi A</name>
</author>
<author>
<name>Sheen, Allison</name>
</author>
<author>
<name>Stinson, Jordan A</name>
</author>
<author>
<name>Duhamel, Lauren</name>
</author>
<author>
<name>Santollani, Luciano</name>
</author>
<author>
<name>Kennedy, Alan</name>
</author>
<author>
<name>Rothschilds, Adrienne M</name>
</author>
<author>
<name>Spranger, Stefani</name>
</author>
<author>
<name>Sansom, David M</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<id>https://hdl.handle.net/1721.1/164957</id>
<updated>2026-02-26T03:07:38Z</updated>
<published>2023-07-24T00:00:00Z</published>
<summary type="text">Both intratumoral regulatory T cell depletion and CTLA-4 antagonism are required for maximum efficacy of anti-CTLA-4 antibodies
Lax, Brianna M; Palmeri, Joseph R; Lutz, Emi A; Sheen, Allison; Stinson, Jordan A; Duhamel, Lauren; Santollani, Luciano; Kennedy, Alan; Rothschilds, Adrienne M; Spranger, Stefani; Sansom, David M; Wittrup, K Dane
Anti-CTLA-4 antibodies have successfully elicited durable tumor regression in the clinic; however, long-term benefit is limited to a subset of patients for select cancer indications. The incomplete understanding of their mechanism of action has hindered efforts at improvement, with conflicting hypotheses proposing either antagonism of the CTLA-4:B7 axis or Fc effector-mediated regulatory T cell (Treg) depletion governing efficacy. Here, we report the engineering of a nonantagonistic CTLA-4 binding domain (b1s1e2) that depletes intratumoral Tregs as an Fc fusion. Comparison of b1s1e2-Fc to 9d9, an antagonistic anti-CTLA-4 antibody, allowed for interrogation of the separate contributions of CTLA-4 antagonism and Treg depletion to efficacy. Despite equivalent levels of intratumoral Treg depletion, 9d9 achieved more long-term cures than b1s1e2-Fc in MC38 tumors, demonstrating that CTLA-4 antagonism provided additional survival benefit. Consistent with prior reports that CTLA-4 antagonism enhances priming, treatment with 9d9, but not b1s1e2-Fc, increased the percentage of activated T cells in the tumor-draining lymph node (tdLN). Treg depletion with either construct was restricted to the tumor due to insufficient surface CTLA-4 expression on Tregs in other compartments. Through intratumoral administration of diphtheria toxin in Foxp3-DTR mice, we show that depletion of both intratumoral and nodal Tregs provided even greater survival benefit than 9d9, consistent with Treg-driven restraint of priming in the tdLN. Our data demonstrate that anti-CTLA-4 therapies require both CTLA-4 antagonism and intratumoral Treg depletion for maximum efficacy—but that potential future therapies also capable of depleting nodal Tregs could show efficacy in the absence of CTLA-4 antagonism.
</summary>
<dc:date>2023-07-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Overcoming lung cancer immunotherapy resistance by combining nontoxic variants of IL-12 and IL-2</title>
<link href="https://hdl.handle.net/1721.1/164956" rel="alternate"/>
<author>
<name>Horton, Brendan L</name>
</author>
<author>
<name>D’Souza, Alicia D</name>
</author>
<author>
<name>Zagorulya, Maria</name>
</author>
<author>
<name>McCreery, Chloe V</name>
</author>
<author>
<name>Abhiraman, Gita C</name>
</author>
<author>
<name>Picton, Lora</name>
</author>
<author>
<name>Sheen, Allison</name>
</author>
<author>
<name>Agarwal, Yash</name>
</author>
<author>
<name>Momin, Noor</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<author>
<name>White, Forest M</name>
</author>
<author>
<name>Garcia, K Christopher</name>
</author>
<author>
<name>Spranger, Stefani</name>
</author>
<id>https://hdl.handle.net/1721.1/164956</id>
<updated>2026-02-26T03:07:35Z</updated>
<published>2023-09-05T00:00:00Z</published>
<summary type="text">Overcoming lung cancer immunotherapy resistance by combining nontoxic variants of IL-12 and IL-2
Horton, Brendan L; D’Souza, Alicia D; Zagorulya, Maria; McCreery, Chloe V; Abhiraman, Gita C; Picton, Lora; Sheen, Allison; Agarwal, Yash; Momin, Noor; Wittrup, K Dane; White, Forest M; Garcia, K Christopher; Spranger, Stefani
Engineered cytokine-based approaches for immunotherapy of cancer are poised to enter the clinic, with IL-12 being at the forefront. However, little is known about potential mechanisms of resistance to cytokine therapies. We found that orthotopic murine lung tumors were resistant to systemically delivered IL-12 fused to murine serum albumin (MSA, IL12-MSA) because of low IL-12 receptor (IL-12R) expression on tumor-reactive CD8+ T cells. IL2-MSA increased binding of IL12-MSA by tumor-reactive CD8+ T cells, and combined administration of IL12-MSA and IL2-MSA led to enhanced tumor-reactive CD8+ T cell effector differentiation, decreased numbers of tumor-infiltrating CD4+ regulatory T cells, and increased survival of lung tumor-bearing mice. Predictably, the combination of IL-2 and IL-12 at therapeutic doses led to significant dose-limiting toxicity. Administering IL-12 and IL-2 analogs with preferential binding to cells expressing Il12rb1 and CD25, respectively, led to a significant extension of survival in mice with lung tumors while abrogating dose-limiting toxicity. These findings suggest that IL-12 and IL-2 represent a rational approach to combination cytokine therapy whose dose-limiting toxicity can be overcome with engineered cytokine variants.
</summary>
<dc:date>2023-09-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Intratumoral aluminum hydroxide–anchored IL-12 drives potent antitumor activity by remodeling the tumor microenvironment</title>
<link href="https://hdl.handle.net/1721.1/164955" rel="alternate"/>
<author>
<name>Battula, Sailaja</name>
</author>
<author>
<name>Papastoitsis, Gregory</name>
</author>
<author>
<name>Kaufman, Howard L</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<author>
<name>Schmidt, Michael M</name>
</author>
<id>https://hdl.handle.net/1721.1/164955</id>
<updated>2026-02-26T03:07:32Z</updated>
<published>2023-12-08T00:00:00Z</published>
<summary type="text">Intratumoral aluminum hydroxide–anchored IL-12 drives potent antitumor activity by remodeling the tumor microenvironment
Battula, Sailaja; Papastoitsis, Gregory; Kaufman, Howard L; Wittrup, K Dane; Schmidt, Michael M
IL-12 is a potent cytokine that can promote innate and adaptive anticancer immunity, but its clinical development has been limited by toxicity when delivered systemically. Intratumoral (i.t.) administration can expand the therapeutic window of IL-12 and other cytokines but is in turn limited by rapid drug clearance from the tumor, which reduces efficacy, necessitates frequent administration, and increases systemic accumulation. To address these limitations, we developed an anchored IL-12 designated ANK-101, composed of an engineered IL-12 variant that forms a stable complex with the FDA-approved vaccine adjuvant aluminum hydroxide (Alhydrogel). Following i.t. administration of murine ANK-101 (mANK-101) in early intervention syngeneic mouse tumors, the complex formed a depot that was locally retained for weeks as measured by IVIS or SPECT/CT imaging, while unanchored protein injected i.t. was cleared within hours. One or 2 i.t. injections of mANK-101 induced single-agent antitumor activity across a diverse range of syngeneic tumors, including models resistant to checkpoint blockade at doses where unanchored IL-12 had no efficacy. Local treatment with mANK-101 further induced regressions of noninjected lesions, especially when combined with systemic checkpoint blockade. Antitumor activity was associated with remodeling of the tumor microenvironment, including prolonged IFN-γ and chemokine expression, recruitment and activation of T and NK cells, M1 myeloid cell skewing, and increased antigen processing and presentation. Subcutaneous administration of ANK-101 in cynomolgus macaques was well tolerated. Together, these data demonstrate that ANK-101 has an enhanced efficacy and safety profile and warrants future clinical development.
</summary>
<dc:date>2023-12-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>CD8+ T cell priming that is required for curative intratumorally anchored anti-4-1BB immunotherapy is constrained by Tregs</title>
<link href="https://hdl.handle.net/1721.1/164954" rel="alternate"/>
<author>
<name>Palmeri, Joseph R</name>
</author>
<author>
<name>Lax, Brianna M</name>
</author>
<author>
<name>Peters, Joshua M</name>
</author>
<author>
<name>Duhamel, Lauren</name>
</author>
<author>
<name>Stinson, Jordan A</name>
</author>
<author>
<name>Santollani, Luciano</name>
</author>
<author>
<name>Lutz, Emi A</name>
</author>
<author>
<name>Pinney, William</name>
</author>
<author>
<name>Bryson, Bryan D</name>
</author>
<author>
<name>Dane Wittrup, K</name>
</author>
<id>https://hdl.handle.net/1721.1/164954</id>
<updated>2026-02-26T03:07:40Z</updated>
<published>2024-03-01T00:00:00Z</published>
<summary type="text">CD8+ T cell priming that is required for curative intratumorally anchored anti-4-1BB immunotherapy is constrained by Tregs
Palmeri, Joseph R; Lax, Brianna M; Peters, Joshua M; Duhamel, Lauren; Stinson, Jordan A; Santollani, Luciano; Lutz, Emi A; Pinney, William; Bryson, Bryan D; Dane Wittrup, K
Although co-stimulation of T cells with agonist antibodies targeting 4-1BB (CD137) improves antitumor immune responses in preclinical studies, clinical success has been limited by on-target, off-tumor activity. Here, we report the development of a tumor-anchored ɑ4-1BB agonist (ɑ4-1BB-LAIR), which consists of a ɑ4-1BB antibody fused to the collagen-binding protein LAIR. While combination treatment with an antitumor antibody (TA99) shows only modest efficacy, simultaneous depletion of CD4+ T cells boosts cure rates to over 90% of mice. Mechanistically, this synergy depends on ɑCD4 eliminating tumor draining lymph node regulatory T cells, resulting in priming and activation of CD8+ T cells which then infiltrate the tumor microenvironment. The cytotoxic program of these newly primed CD8+ T cells is then supported by the combined effect of TA99 and ɑ4-1BB-LAIR. The combination of TA99 and ɑ4-1BB-LAIR with a clinically approved ɑCTLA-4 antibody known for enhancing T cell priming results in equivalent cure rates, which validates the mechanistic principle, while the addition of ɑCTLA-4 also generates robust immunological memory against secondary tumor rechallenge. Thus, our study establishes the proof of principle for a clinically translatable cancer immunotherapy.
</summary>
<dc:date>2024-03-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Estimating Isotope Shifts for $^{227}$Th and $^{229}$Th in Th$^{3+}$: 5F$_{5/2} \rightarrow$ 6D$_{5/2}$ Transition</title>
<link href="https://hdl.handle.net/1721.1/164953" rel="alternate"/>
<author>
<name>Lam, P. Y. Ian</name>
</author>
<author>
<name>MohanMurthy, Prajwal</name>
</author>
<id>https://hdl.handle.net/1721.1/164953</id>
<updated>2026-02-26T03:01:06Z</updated>
<published>2026-02-25T00:00:00Z</published>
<summary type="text">Estimating Isotope Shifts for $^{227}$Th and $^{229}$Th in Th$^{3+}$: 5F$_{5/2} \rightarrow$ 6D$_{5/2}$ Transition
Lam, P. Y. Ian; MohanMurthy, Prajwal
\textbf{Motivation:} Accurate spectroscopic information for isotopes of $^{224-232}$Th are critical for experimental programs investigating such thorium isotopes as candidates for next-generation nuclear optical clocks and as platforms for searches of symmetry-violating effects. Direct experimental data on isotope shifts in the $\text{Th}^{3+}:5F_{5/2} \to 6D_{5/2}$ line at $690$ nm are sparse, with measurements available only for $^{229}\text{Th}$ and $^{230}\text{Th}$ relative to the reference isotope $^{232}\text{Th}$.\\&#13;
&#13;
\textbf{Method:} To address this gap, we employed a King-plot analysis comparing the well-characterized isotope shifts of the $\text{Th}^{+}$ transition at $583.9$ nm to the limited data available for the $690$ nm transition of $\text{Th}^{3+}$. Using nuclear structure information on mean-square charge radii and nuclear quadrupole deformations, we extracted the field-shift constant $F_{690}$ and mass-shift constant $M_{690}$ for the $690$ nm transition. We subsequently calculated the missing isotope shifts by incorporating published values of $\delta\langle r^2\rangle$ where available and estimating $\delta\langle r^2\rangle$ for unmeasured isotopes using nuclear quadrupole deformation coefficients $\beta_2$ from the FRDM model.\\&#13;
&#13;
\textbf{Key Results:} The calculated isotope shifts for the $\text{Th}^{3+}:5F_{5/2} \to 6D_{5/2}$ transition relative to $690~$nm transition of $^{232}\text{Th}$ are:&#13;
&#13;
\begin{align}&#13;
&#13;
\delta\nu^{224,232}_{690} &amp;= -29296(5585) \text{MHz} \nonumber\\&#13;
&#13;
\delta\nu^{225,232}_{690} &amp;= -25840(4930) \text{MHz} \nonumber\\&#13;
&#13;
\delta\nu^{226,232}_{690} &amp;= -22113(4219) \text{MHz} \nonumber\\&#13;
&#13;
\delta\nu^{227,232}_{690} &amp;= -18631(6238) \text{MHz} \nonumber\\&#13;
&#13;
\delta\nu^{228,232}_{690} &amp;= -14970(6181) \text{MHz} \nonumber\\&#13;
&#13;
\delta\nu^{231,232}_{690} &amp;= -3742(715) \nonumber\text{MHz}&#13;
&#13;
\end{align}&#13;
&#13;
Our results for the isotopes of $^{227,228}$Th use experimental $\delta\langle r^2\rangle$ values, whereas the remaining ones use theoretical values of $\delta\langle r^2\rangle$ calculated from quadrupole deformation coefficients. These results provide essential spectroscopic data for future precision measurements with thorium isotopes in various ionized states.
This work is supported by BNL award #460913, a Phi Kappa Phi Fellowship, and generous support from Prof. R. P. Redwine and MIT LNS.
</summary>
<dc:date>2026-02-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Targeting of the CD161 inhibitory receptor enhances T-cell–mediated immunity against hematological malignancies</title>
<link href="https://hdl.handle.net/1721.1/164952" rel="alternate"/>
<author>
<name>Alvarez Calderon, Francesca</name>
</author>
<author>
<name>Kang, Byong H</name>
</author>
<author>
<name>Kyrysyuk, Oleksandr</name>
</author>
<author>
<name>Zheng, Shiwei</name>
</author>
<author>
<name>Wang, Hao</name>
</author>
<author>
<name>Mathewson, Nathan D</name>
</author>
<author>
<name>Luoma, Adrienne M</name>
</author>
<author>
<name>Ning, Xiaohan</name>
</author>
<author>
<name>Pyrdol, Jason</name>
</author>
<author>
<name>Cao, Xuan</name>
</author>
<author>
<name>Suvà, Mario L</name>
</author>
<author>
<name>Yuan, Guo-Cheng</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<author>
<name>Wucherpfennig, Kai W</name>
</author>
<id>https://hdl.handle.net/1721.1/164952</id>
<updated>2026-02-26T03:07:30Z</updated>
<published>2024-03-21T00:00:00Z</published>
<summary type="text">Targeting of the CD161 inhibitory receptor enhances T-cell–mediated immunity against hematological malignancies
Alvarez Calderon, Francesca; Kang, Byong H; Kyrysyuk, Oleksandr; Zheng, Shiwei; Wang, Hao; Mathewson, Nathan D; Luoma, Adrienne M; Ning, Xiaohan; Pyrdol, Jason; Cao, Xuan; Suvà, Mario L; Yuan, Guo-Cheng; Wittrup, K Dane; Wucherpfennig, Kai W
The CD161 inhibitory receptor is highly upregulated by tumor-infiltrating T cells in multiple human solid tumor types, and its ligand, CLEC2D, is expressed by both tumor cells and infiltrating myeloid cells. Here, we assessed the role of the CD161 receptor in hematological malignancies. Systematic analysis of CLEC2D expression using the Cancer Cell Line Encyclopedia revealed that CLEC2D messenger RNA was most abundant in hematological malignancies, including B-cell and T-cell lymphomas as well as lymphocytic and myelogenous leukemias. CLEC2D protein was detected by flow cytometry on a panel of cell lines representing a diverse set of hematological malignancies. We, therefore, used yeast display to generate a panel of high-affinity, fully human CD161 monoclonal antibodies (mAbs) that blocked CLEC2D binding. These mAbs were specific for CD161 and had a similar affinity for human and nonhuman primate CD161, a property relevant for clinical translation. A high-affinity CD161 mAb enhanced key aspects of T-cell function, including cytotoxicity, cytokine production, and proliferation, against B-cell lines originating from patients with acute lymphoblastic leukemia, diffuse large B-cell lymphoma, and Burkitt lymphoma. In humanized mouse models, this CD161 mAb enhanced T-cell–mediated immunity, resulting in a significant survival benefit. Single cell RNA-seq data demonstrated that CD161 mAb treatment enhanced expression of cytotoxicity genes by CD4 T cells as well as a tissue-residency program by CD4 and CD8 T cells that is associated with favorable survival outcomes in multiple human cancer types. These fully human mAbs, thus, represent potential immunotherapy agents for hematological malignancies.
</summary>
<dc:date>2024-03-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Upcycling spent medium-Ni cathodes via novel liquified salts sourcing</title>
<link href="https://hdl.handle.net/1721.1/164951" rel="alternate"/>
<author>
<name>Yoon, Moonsu</name>
</author>
<author>
<name>Park, Jin-Sung</name>
</author>
<author>
<name>Chen, Weiyin</name>
</author>
<author>
<name>Huang,  Yimeng</name>
</author>
<author>
<name>Dai,  Tao</name>
</author>
<author>
<name>Lee,  Yumin</name>
</author>
<author>
<name>Shin,  Jungmin</name>
</author>
<author>
<name>Lee,  Seungmi</name>
</author>
<author>
<name>Kim,  Yongil</name>
</author>
<author>
<name>Lee, Dongsoo</name>
</author>
<author>
<name>Shin, Daiha</name>
</author>
<author>
<name>Cho, Jaephil</name>
</author>
<author>
<name>Dong,  Yanhao</name>
</author>
<author>
<name>Li, Ju</name>
</author>
<id>https://hdl.handle.net/1721.1/164951</id>
<updated>2026-02-26T03:07:25Z</updated>
<published>2025-04-02T00:00:00Z</published>
<summary type="text">Upcycling spent medium-Ni cathodes via novel liquified salts sourcing
Yoon, Moonsu; Park, Jin-Sung; Chen, Weiyin; Huang,  Yimeng; Dai,  Tao; Lee,  Yumin; Shin,  Jungmin; Lee,  Seungmi; Kim,  Yongil; Lee, Dongsoo; Shin, Daiha; Cho, Jaephil; Dong,  Yanhao; Li, Ju
The rapid growth in lithium-ion battery technology underscores the urgent need for sustainable recycling to address the environmental and economic challenges of battery waste. This study introduces a liquified-salts-assisted upcycling approach to transform spent medium-Ni cathodes into high-performance single-crystalline Ni-rich cathodes. Utilizing the LiOH–LiNO3–Ni(NO3)2·6H2O eutectic, this method leverages planetary centrifugal mixing to create a liquid-like environment for accelerated elemental diffusion and microstructural refinement. The in situ liquefaction of these salts ensures seamless precursor integration, achieving compositional uniformity and minimizing impurity formation. Compared to conventional solid-state methods, our method significantly suppresses rock-salt phase formation, and improves electrochemical performance with superior cycling stability and rate capability. The environmental and economic advantages of our approach highlight its potential to reduce greenhouse gas emissions and energy consumption. This scalable, energy-efficient strategy provides a transformative solution for battery waste management, paving the way for the sustainable production of next-generation cathode materials.
</summary>
<dc:date>2025-04-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>CLN-617 Retains IL2 and IL12 in Injected Tumors to Drive Robust and Systemic Immune-Mediated Antitumor Activity</title>
<link href="https://hdl.handle.net/1721.1/164950" rel="alternate"/>
<author>
<name>Mehta, Naveen K</name>
</author>
<author>
<name>Rakhra, Kavya</name>
</author>
<author>
<name>Meetze, Kristan A</name>
</author>
<author>
<name>Li, Bochong</name>
</author>
<author>
<name>Momin, Noor</name>
</author>
<author>
<name>Chang, Jason YH</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<author>
<name>Baeuerle, Patrick A</name>
</author>
<author>
<name>Michaelson, Jennifer S</name>
</author>
<id>https://hdl.handle.net/1721.1/164950</id>
<updated>2026-02-26T03:07:34Z</updated>
<published>2024-08-01T00:00:00Z</published>
<summary type="text">CLN-617 Retains IL2 and IL12 in Injected Tumors to Drive Robust and Systemic Immune-Mediated Antitumor Activity
Mehta, Naveen K; Rakhra, Kavya; Meetze, Kristan A; Li, Bochong; Momin, Noor; Chang, Jason YH; Wittrup, K Dane; Baeuerle, Patrick A; Michaelson, Jennifer S
Despite clinical evidence of antitumor activity, the development of cytokine therapies has been hampered by a narrow therapeutic window and limited response rates. Two cytokines of high interest for clinical development are interleukin 2 (IL2) and interleukin 12 (IL12), which potently synergize to promote the activation and proliferation of T cells and NK cells. However, the only approved human IL2 therapy, Proleukin, is rarely used in the clinic due to systemic toxicities, and no IL12 product has been approved to date due to severe dose-limiting toxicities. Here, we describe CLN-617, a first-in-class therapeutic for intratumoral (IT) injection that co-delivers IL2 and IL12 on a single molecule in a safe and effective manner. CLN-617 is a single-chain fusion protein comprised of IL2, leukocyte-associated immunoglobulin-like receptor 2 (LAIR2), human serum albumin (HSA), and IL12. LAIR2 and HSA function to retain CLN-617 in the treated tumor by binding collagen and increasing molecular weight, respectively. We found that IT administration of a murine surrogate of CLN-617, mCLN-617, eradicated established treated and untreated tumors in syngeneic models, significantly improved response to anti-PD1 checkpoint therapy, and generated a robust abscopal response dependent on cellular immunity and antigen cross-presentation. CLN-617 is being evaluated in a clinical trial in patients with advanced solid tumors (NCT06035744).
</summary>
<dc:date>2024-08-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Porous Organic Materials-Based Atomically Dispersed Metal Electrocatalysts</title>
<link href="https://hdl.handle.net/1721.1/164949" rel="alternate"/>
<author>
<name>Zhang, Hao</name>
</author>
<author>
<name>Wang,  Suwen</name>
</author>
<author>
<name>Lv,  Enmin</name>
</author>
<author>
<name>Qi, Menghui</name>
</author>
<author>
<name>He, Chengchao</name>
</author>
<author>
<name>Dong, Xinglong</name>
</author>
<author>
<name>Qiu,  Jieshan</name>
</author>
<author>
<name>Wang, Yong</name>
</author>
<author>
<name>Wen,  Zhenhai</name>
</author>
<id>https://hdl.handle.net/1721.1/164949</id>
<updated>2026-02-26T03:07:23Z</updated>
<published>2025-03-25T00:00:00Z</published>
<summary type="text">Porous Organic Materials-Based Atomically Dispersed Metal Electrocatalysts
Zhang, Hao; Wang,  Suwen; Lv,  Enmin; Qi, Menghui; He, Chengchao; Dong, Xinglong; Qiu,  Jieshan; Wang, Yong; Wen,  Zhenhai
The transition to renewable energy sources and the need for efficient energy conversion technologies have led to the development of various types of catalysts, among which atomically dispersed metal catalysts (ADMCs) supported by porous organic materials (POMs) have attracted attention for their high catalytic efficiency and stability. This review focuses on the development and application of ADMCs supported by POMs, such as MOFs, COFs, and HOFs, which offer catalytic performance due to their high atomic utilization, stability, and selectivity. This paper systematically explores various strategies for synthesizing ADMCs, including the use of organic linkers, metal nodes, and pore spaces within POMs to stabilize metal atoms and prevent aggregation. Key applications highlighted include energy conversion and storage technologies, such as fuel cells, water splitting, CO2 reduction and nitrogen reduction, where ADMCs demonstrate the potential to replace noble metals. Despite the progress, challenges remain in achieving high metal loading, long-term stability, and cost-effective large-scale production. This study underscores the importance of advanced characterization techniques and computational models to deepen the understanding of ADMCs’ catalytic mechanisms and guide future material design, paving the way for their broader application in sustainable energy technologies.
</summary>
<dc:date>2025-03-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantifying Mining Requirement and Waste for Energy Sustainability</title>
<link href="https://hdl.handle.net/1721.1/164948" rel="alternate"/>
<author>
<name>Ermakova, Dinara</name>
</author>
<author>
<name>Sen,  Drishti</name>
</author>
<author>
<name>Wainwright, Haruko</name>
</author>
<author>
<name>Bae,  Jin Whan</name>
</author>
<author>
<name>Chene, Lisha</name>
</author>
<author>
<name>Vujic, Jasmina</name>
</author>
<id>https://hdl.handle.net/1721.1/164948</id>
<updated>2026-02-26T03:07:18Z</updated>
<published>2025-04-13T00:00:00Z</published>
<summary type="text">Quantifying Mining Requirement and Waste for Energy Sustainability
Ermakova, Dinara; Sen,  Drishti; Wainwright, Haruko; Bae,  Jin Whan; Chene, Lisha; Vujic, Jasmina
This study demonstrates the life-cycle assessment of different energy sources-coal, natural gas, solar, wind, nuclear, and hydro-particularly focused on mining activities and waste per given electricity capacity and generation. It also includes carbon dioxide emissions generated during the transportation of raw materials to build and operate electricity generating systems and their environmental impacts in the US from 2023 to 2050. We identify the raw material and metal requirements for the U.S.-based typical systems in each energy type and synthesize datasets on typical ore fraction and material recycling factors, while taking into account the capacity factor of the power plants. We then compute the total mass and volume of material requirements and waste mass and volume for the front-end (i.e., mining, material needed for construction), operation (i.e., fuel, maintenance), and back-end (i.e., decommissioning) activities. The key findings are that (1) the energy transition from fossil fuel to low-carbon energy sources would reduce mining waste as well as the shipping carbon footprint; (2) the difference in capacity and actual electricity generation is significant for the life-cycle assessment due to low capacity factors of solar and wind energy; (3) several key metals with low abundance or high requirements dominate mining waste, which highlights the need for recycling and establishing a circular economy; (4) mining of critical minerals becomes important during the clean energy transition and (5) nuclear energy generates least waste and contributes least to shipping emissions among the low-carbon sources due to the high energy density and capacity factor and the small mass of materials it requires. Although the waste mass may not necessarily be equal to the environmental impact due to different waste isolation technologies, we aim to highlight the importance of considering mining and decommissioning waste, which are often ignored but important for accounting for the environmental impacts and addressing energy justice issues.
</summary>
<dc:date>2025-04-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Scholarly Knowledge Ecosystem: Challenges and Opportunities for the Field of Information</title>
<link href="https://hdl.handle.net/1721.1/164947" rel="alternate"/>
<author>
<name>Altman, Micah</name>
</author>
<author>
<name>Cohen, Philip N</name>
</author>
<id>https://hdl.handle.net/1721.1/164947</id>
<updated>2026-02-26T03:07:41Z</updated>
<published>2022-01-31T00:00:00Z</published>
<summary type="text">The Scholarly Knowledge Ecosystem: Challenges and Opportunities for the Field of Information
Altman, Micah; Cohen, Philip N
The scholarly knowledge ecosystem presents an outstanding exemplar of the challenges of understanding, improving, and governing information ecosystems at scale. This article draws upon significant reports on aspects of the ecosystem to characterize the most important research challenges and promising potential approaches. The focus of this review article is the fundamental scientific research challenges related to developing a better understanding of the scholarly knowledge ecosystem. Across a range of disciplines, we identify reports that are conceived broadly, published recently, and written collectively. We extract the critical research questions, summarize these using quantitative text analysis, and use this quantitative analysis to inform a qualitative synthesis. Three broad themes emerge from this analysis: the need for multi-sectoral cooperation and coordination, for mixed methods analysis at multiple levels, and interdisciplinary collaboration. Further, we draw attention to an emerging consensus that scientific research in this area should by a set of core human values.
</summary>
<dc:date>2022-01-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Investigation of L2/Ln Pragmatic Competence: Its Core and Route Map</title>
<link href="https://hdl.handle.net/1721.1/164946" rel="alternate"/>
<author>
<name>Mao, Tiaoyuan</name>
</author>
<id>https://hdl.handle.net/1721.1/164946</id>
<updated>2026-02-26T03:07:44Z</updated>
<published>2021-08-17T00:00:00Z</published>
<summary type="text">Investigation of L2/Ln Pragmatic Competence: Its Core and Route Map
Mao, Tiaoyuan
How to use language properly and acquire the capacity for language use has become the focus of linguists and philosophers for centuries. Therefore, pragmatic competence underlying language use arouses enormous interests of language acquisition practitioners. This study reveals the core properties of various models or theories of pragmatic competence, such as the communicative componential models, the form-function mapping proposal of the functionalist, the tripartite cognitive model, and the current integrated model of pragmatic competence. The common core includes (but not limited to) integration of thought and communication, one uniform pragmatic mechanism, dynamic form-function mapping, and complementarity between grammatical and pragmatic competences. With the findings as a departure, a brief outline for further investigation of pragmatic competence is proposed finally, including pathological and neurobiological examination of pragmatic competence.
</summary>
<dc:date>2021-08-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Investigating Structural Biophysical Features for Antigen-Binding Fragment Crystallization via Machine Learning</title>
<link href="https://hdl.handle.net/1721.1/164945" rel="alternate"/>
<author>
<name>Chattaraj, Krishna Gopal</name>
</author>
<author>
<name>Ferreira,  Joana</name>
</author>
<author>
<name>Myerson, Allan S.</name>
</author>
<author>
<name>Trout,  Bernhardt L.</name>
</author>
<id>https://hdl.handle.net/1721.1/164945</id>
<updated>2026-02-26T03:07:12Z</updated>
<published>2025-02-28T00:00:00Z</published>
<summary type="text">Investigating Structural Biophysical Features for Antigen-Binding Fragment Crystallization via Machine Learning
Chattaraj, Krishna Gopal; Ferreira,  Joana; Myerson, Allan S.; Trout,  Bernhardt L.
Antibody-based therapeutics continue to be an important pharmaceutical development modality. Crystallization of antibodies is important for structural characterization, but in addition has the potential for use as a separation method and for use as a dosage form. Nevertheless, bringing about controlled crystallization of an antibody remains a challenging task due to its large size, high degree of segmental flexibility, and the intricacy of all the occurring interactions (e.g., protein–protein interactions, protein–solvent interactions, etc.). Methods to predict important contact sites could help to develop such crystallization methods. However, limited data and understanding have hitherto not allowed the development of such robust methods. This study employs machine learning combined with in silico modelling of crystal structures using available experimental structures to identify the crucial physicochemical features necessary for successful antibody crystallization in an attempt to remedy that gap. The developed method can with good accuracy distinguish crystal-site residues from non-crystal-site residues. A set of 510 descriptors is utilized to characterize each residue, which is treated as a distinct data point. Moreover, new algorithms have been developed to design novel descriptors that improve the model's predictive capabilities. Fragment antigen-binding (Fab) regions are investigated due to the scarcity of full-length monoclonal antibodies (mAbs) crystal structures. The current findings show that the extreme gradient boosting (XGBoost) algorithm effectively identifies crystal site residues, as evidenced by an AUPRC value that is more than 3-fold higher than that of the baseline model. The top-ranked descriptors indicate that crystal-site residues are primarily characterized by solvent-exposed residues with high spatial aggregation propensity (SAP), signifying hydrophobic patches, and their immediate surface-exposed neighbors. Moreover, these high SAP residues are often surrounded by other solvent-exposed residues that are either polar, charged, or both. In contrast, residues not involved in crystal interfaces generally lack these essential features, though some might be excluded due to specific crystal lattice arrangements. Additionally, reducing the feature set from 510 to the top 15% in the XGBoost model yields similar performance while significantly simplifying the model.
</summary>
<dc:date>2025-02-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modeling the Role of Supramolecular Clustering in Multivalent Assembly</title>
<link href="https://hdl.handle.net/1721.1/164944" rel="alternate"/>
<author>
<name>Sbalbi,  Nicholas</name>
</author>
<author>
<name>Petrov, Artem</name>
</author>
<author>
<name>Sass, Jacob</name>
</author>
<author>
<name>Ye,  Matthew</name>
</author>
<author>
<name>Alexander-Katz, Alfredo</name>
</author>
<author>
<name>Macfarlane, Robert J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164944</id>
<updated>2026-02-26T03:07:14Z</updated>
<published>2025-04-23T00:00:00Z</published>
<summary type="text">Modeling the Role of Supramolecular Clustering in Multivalent Assembly
Sbalbi,  Nicholas; Petrov, Artem; Sass, Jacob; Ye,  Matthew; Alexander-Katz, Alfredo; Macfarlane, Robert J.
In self-assembled systems, a combination of multiple weak supramolecular interactions is often utilized to enable strong yet reversible binding. When modeling the behavior of these multivalent interfaces, it is commonly assumed that binding pairs are independent, i.e., the probability of a pair being bound is unaffected by the bound state of neighboring pairs. Inspired by recent experimental work, we report that for a variety of systems this assumption may not hold, leading to the formation of clusters at the binding interface. Through a series of analytical and numerical models of end-functionalized brushes, we reveal the role of cluster size on binding thermodynamics, detail how entropic contributions from polymer chains provide tunable control of cluster size, and provide predictions for cluster size as a function of system architecture. Investigation of these models yields surprising results: within the melting window, the enthalpy of binding of multivalent interfaces is predicted to depend only on cluster size and not on the overall valency of the multivalent system. Moreover, clustering is predicted to be significant even in systems with only weak dipole and dispersion interactions between neighboring groups. Combined, this work brings to light the potential impacts of clustering on multivalent self-assembly, providing theoretical justification for previous experimental observations and paving the way for future work in this area.
</summary>
<dc:date>2025-04-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Elucidating the effect of Fe substitution on structural and redox stability of Na2Mn3O7</title>
<link href="https://hdl.handle.net/1721.1/164943" rel="alternate"/>
<author>
<name>Smith, Hugh B.</name>
</author>
<author>
<name>Lee,  Gi-Hyeok</name>
</author>
<author>
<name>Kumar,  Bachu Sravan</name>
</author>
<author>
<name>Penn, Aubrey N.</name>
</author>
<author>
<name>Venturi, Victor</name>
</author>
<author>
<name>Gao, Yifan</name>
</author>
<author>
<name>Davis,  Ryan C.</name>
</author>
<author>
<name>Stone, Kevin Hunter</name>
</author>
<author>
<name>Hunt,  Adrian</name>
</author>
<author>
<name>Waluyo, Iradwikanari</name>
</author>
<author>
<name>Stavitski,  Eli</name>
</author>
<author>
<name>Yangb, Wanli</name>
</author>
<author>
<name>Abate, Iwnetim I.</name>
</author>
<id>https://hdl.handle.net/1721.1/164943</id>
<updated>2026-02-26T03:07:21Z</updated>
<published>2025-03-11T00:00:00Z</published>
<summary type="text">Elucidating the effect of Fe substitution on structural and redox stability of Na2Mn3O7
Smith, Hugh B.; Lee,  Gi-Hyeok; Kumar,  Bachu Sravan; Penn, Aubrey N.; Venturi, Victor; Gao, Yifan; Davis,  Ryan C.; Stone, Kevin Hunter; Hunt,  Adrian; Waluyo, Iradwikanari; Stavitski,  Eli; Yangb, Wanli; Abate, Iwnetim I.
Sodium-ion batteries have the potential to meet the growing demand for energy storage due to their low costs stemming from natural resource abundances, but their cathode energy densities must be improved to be comparable to those of lithium-ion batteries. One strategy is accessing high voltage capacity through high-valent redox reactions. Such reactions usually cause instability in cathode materials, but Na2Mn3O7 (NMO) has demonstrated excellent performance and reversibility in the high-valent regime due to its unique lattice structure with ordered Mn vacancies. This work expands the universality of the ordered vacancy as a design principle and increases the material candidates with such exceptional electrochemical behavior. Our approach involves synergizing cationic ordered vacancies with tunable metal–ligand hybridization through partial metal substitution. In particular, we successfully incorporated Fe3+ for Mn4+ in NMO to make Na2.25Mn2.75Fe0.25O7 and achieved improved high-valent redox behavior. Fe substitution leads to larger specific capacities (171 vs. 159 mA h g−1 first cycle), enhanced cycle stability (97 vs. 60 mA h g−1 after 50 cycles), and superior rate performance. This study lays the foundation for developing new cathode materials with stable high-valent redox through substitution of redox-active transition metals by employing cationic ordered vacancies and partial transition metal substitution as design principles in tandem.
</summary>
<dc:date>2025-03-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Progress in Computational Methods and Mechanistic Insights on the Growth of Carbon Nanotubes</title>
<link href="https://hdl.handle.net/1721.1/164942" rel="alternate"/>
<author>
<name>Wang,  Linzheng</name>
</author>
<author>
<name>Tricard, Nicolas</name>
</author>
<author>
<name>Chen, Zituo</name>
</author>
<author>
<name>Deng, Sili</name>
</author>
<id>https://hdl.handle.net/1721.1/164942</id>
<updated>2026-02-26T03:07:16Z</updated>
<published>2025-03-19T00:00:00Z</published>
<summary type="text">Progress in Computational Methods and Mechanistic Insights on the Growth of Carbon Nanotubes
Wang,  Linzheng; Tricard, Nicolas; Chen, Zituo; Deng, Sili
Carbon nanotubes (CNTs), as a promising nanomaterial with broad applications across various fields, are continuously attracting significant research attention. Despite substantial progress in understanding their growth mechanisms, synthesis methods, and post-processing techniques, two major goals remain challenging: achieving property-targeted growth and efficient mass production. Recent advancements in computational methods driven by increased computational resources, the development of platforms, and the refinement of theoretical models, have significantly deepened our understanding of the mechanisms underlying CNT growth. This review aims to comprehensively examine the latest computational techniques that shed light on various aspects of CNT synthesis. The first part of this review focuses on progress in computational methods. Beginning with atomistic simulation approaches, we introduce the fundamentals and advancements in density functional theory (DFT), molecular dynamics (MD) simulations, and kinetic Monte Carlo (kMC) simulations. We discuss the applicability and limitations of each method in studying mechanisms of CNT growth. Then, the focus shifts to multiscale modeling approaches, where we demonstrate the coupling of atomic-scale simulations with reactor-scale multiphase flow models. Given that CNT growth inherently spans multiple temporal and spatial scales, the development and application of multiscale modeling techniques are poised to become a central focus of future computational research in this field. Furthermore, this review emphasizes the growing role played by machine learning in CNT growth research. Compared with traditional physics-based simulation methods, data-driven machine learning approaches have rapidly emerged in recent years, revolutionizing research paradigms from molecular simulation to experimental design. In the second part of this review, we highlight the latest advancements in CNT growth mechanisms and synthesis methods achieved through computational techniques. These include novel findings across fundamental growth stages, i.e., from nucleation to elongation and ultimately termination. We also examine the dynamic behaviors of catalyst nanoparticles and chirality-controlled growth processes, emphasizing how these insights contribute to advancing the field. Finally, in the concluding section, we propose future directions for advancements of computational approaches toward deeper understanding of CNT growth mechanisms and better support of CNT manufacturing.
</summary>
<dc:date>2025-03-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Superthermal Solar Interfacial Evaporation is not due to Reduced Latent Heat of Water</title>
<link href="https://hdl.handle.net/1721.1/164941" rel="alternate"/>
<author>
<name>Zhang, James H.</name>
</author>
<author>
<name>Mittapally,  Rohith</name>
</author>
<author>
<name>Lva, Guangxin</name>
</author>
<author>
<name>Chen, Gang</name>
</author>
<id>https://hdl.handle.net/1721.1/164941</id>
<updated>2026-02-26T03:07:09Z</updated>
<published>2025-01-13T00:00:00Z</published>
<summary type="text">Superthermal Solar Interfacial Evaporation is not due to Reduced Latent Heat of Water
Zhang, James H.; Mittapally,  Rohith; Lva, Guangxin; Chen, Gang
To explain reported solar interfacial-evaporation rates from porous materials beyond an apparent 100% efficiency using the thermal evaporation mechanism, many publications hypothesize that intermediate water inside porous materials has a reduced latent heat. Key supporting evidence is that water-only surfaces have lower natural evaporation rates than porous evaporators, with the ratio of the two rates taken as the latent heat reduction. Through simulations and experiments, we study natural evaporation of water and show that reported differences in evaporation rates between porous materials and water are likely due to experimental error from recessed evaporating surfaces. A few millimeter recession of the water surface relative to the container lip can drop evaporation rates by over 50% due to a stagnant air layer, suggesting that the comparative experiments are prone to error. Furthermore, in the reduced latent heat picture, interfacial cooling must occur at the porous sample–water interface due to the enthalpy difference between bulk water and intermediate water. Our transport modeling shows that reduced latent heat cannot explain superthermal evaporation and that new mechanistic directions need to be pursued.
</summary>
<dc:date>2025-01-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Generative design and molecular mechanics characterization of silk proteins based on unfolding behavior</title>
<link href="https://hdl.handle.net/1721.1/164940" rel="alternate"/>
<author>
<name>Lu, Wei</name>
</author>
<author>
<name>Buehler, Markus J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164940</id>
<updated>2026-02-26T03:07:20Z</updated>
<published>2025-05-02T00:00:00Z</published>
<summary type="text">Generative design and molecular mechanics characterization of silk proteins based on unfolding behavior
Lu, Wei; Buehler, Markus J.
Spider silk exhibits exceptional mechanical properties, biocompatibility, and biodegradability, making it a promising material for bioengineered applications. However, the complexity and diversity of silk proteins, coupled with limited experimental data, have hindered the rational design of silk-based biomaterials. Furthermore, the mechanobiology of these proteins and their impact on silk fiber properties remain underexplored. In this study, we introduce a series of novel silk protein sequences and characterize their nonlinear unfolding behavior and mechanical properties through molecular dynamics (MD) simulations. Focusing on major ampullate spidroin (MaSp) silk proteins, we curate a dataset that integrates experimentally acquired sequences with synthetic sequences generated by SilkomeGPT, a generative model for silk-inspired proteins. Structural predictions are performed using OmegaFold, from which high-fidelity regions are extracted and analyzed. Their unfolding responses are assessed via implicit all-atom MD simulations, enabling characterization of their mechanical behavior. This computationally efficient framework facilitates the rational design of spider silk proteins by linking atomistic and sequence features to larger-scale properties. The developed dataset systematically captures structural uncertainties, while simulations provide atomic-level insights into how protein mechanics contribute to fiber properties, advancing the mechanobiological understanding of spider silk and supporting diverse applications in biomaterials design.
</summary>
<dc:date>2025-05-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tumor-Localized Interleukin-2 and Interleukin-12 Combine with Radiation Therapy to Safely Potentiate Regression of Advanced Malignant Melanoma in Pet Dogs</title>
<link href="https://hdl.handle.net/1721.1/164939" rel="alternate"/>
<author>
<name>Stinson, Jordan A</name>
</author>
<author>
<name>Barbosa, Matheus Moreno P</name>
</author>
<author>
<name>Sheen, Allison</name>
</author>
<author>
<name>Momin, Noor</name>
</author>
<author>
<name>Fink, Elizabeth</name>
</author>
<author>
<name>Hampel, Jordan</name>
</author>
<author>
<name>Selting, Kim A</name>
</author>
<author>
<name>Kamerer, Rebecca L</name>
</author>
<author>
<name>Bailey, Keith L</name>
</author>
<author>
<name>Wittrup, Karl D</name>
</author>
<author>
<name>Fan, Timothy M</name>
</author>
<id>https://hdl.handle.net/1721.1/164939</id>
<updated>2026-02-25T07:11:58Z</updated>
<published>2024-09-13T00:00:00Z</published>
<summary type="text">Tumor-Localized Interleukin-2 and Interleukin-12 Combine with Radiation Therapy to Safely Potentiate Regression of Advanced Malignant Melanoma in Pet Dogs
Stinson, Jordan A; Barbosa, Matheus Moreno P; Sheen, Allison; Momin, Noor; Fink, Elizabeth; Hampel, Jordan; Selting, Kim A; Kamerer, Rebecca L; Bailey, Keith L; Wittrup, Karl D; Fan, Timothy M
Purpose:&#13;
Cytokines IL2 and IL12 exhibit potent anticancer activity but suffer a narrow therapeutic window due to off-tumor immune cell activation. Engineering cytokines with the ability to bind and associate with tumor collagen after intratumoral injection potentiated response without toxicity in mice and was previously safe in pet dogs with sarcoma. Here, we sought to test the efficacy of this approach in dogs with advanced melanoma.&#13;
&#13;
Patients and Methods:&#13;
This study examined 15 client-owned dogs with histologically or cytologically confirmed malignant melanoma that received a single 9-Gy fraction of radiotherapy, followed by six cycles of combined collagen-anchored IL2 and IL12 therapy every 2 weeks. Cytokine dosing followed a 3 + 3 dose escalation design, with the initial cytokine dose chosen from prior evaluation in canine sarcomas. No exclusion criteria for tumor stage or metastatic burden, age, weight, or neuter status were applied for this trial.&#13;
&#13;
Results:&#13;
Median survival regardless of the tumor stage or dose level was 256 days, and 10/13 (76.9%) dogs that completed treatment had CT-measured tumor regression at the treated lesion. In dogs with metastatic disease, 8/13 (61.5%) had partial responses across their combined lesions, which is evidence of locoregional response. Profiling by NanoString of treatment-resistant dogs revealed that B2m loss was predictive of poor response to this therapy.&#13;
&#13;
Conclusions:&#13;
Collectively, these results confirm the ability of locally administered tumor-anchored cytokines to potentiate responses at regional disease sites when combined with radiation. This evidence supports the clinical translation of this approach and highlights the utility of comparative investigation in canine cancers.
</summary>
<dc:date>2024-09-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bivalent target-binding bioPROTACs induce potent degradation of oncogenic SHP2</title>
<link href="https://hdl.handle.net/1721.1/164938" rel="alternate"/>
<author>
<name>Hoffman, Megan</name>
</author>
<author>
<name>Krum, David</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<id>https://hdl.handle.net/1721.1/164938</id>
<updated>2026-02-25T07:11:56Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">Bivalent target-binding bioPROTACs induce potent degradation of oncogenic SHP2
Hoffman, Megan; Krum, David; Wittrup, K Dane
Targeted protein degradation is an emergent and rapidly evolving therapeutic strategy. In particular, biologics-based targeted degradation modalities (bioPROTACs) are relatively under explored compared to small molecules. Here, we investigate how target affinity, cellular localization, and valency of bioPROTACs impact efficacy of targeted degradation of the oncogenic phosphatase src-homology 2 containing protein tyrosine phosphatase-2 (SHP2). We identify bivalent recruitment of SHP2 by bioPROTACs as a broadly applicable strategy to improve potency. Moreover, we demonstrate that SHP2-targeted bioPROTACs can effectively counteract gain-of-function SHP2 mutants present in cancer, which are otherwise challenging to selectively target with small molecule constructs. Overall, this study demonstrates the utility of bioPROTACs for challenging targets, and further explicates design principles for therapeutic bioPROTACs.
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Local delivery of cell surface-targeted immunocytokines programs systemic antitumor immunity</title>
<link href="https://hdl.handle.net/1721.1/164937" rel="alternate"/>
<author>
<name>Santollani, Luciano</name>
</author>
<author>
<name>Maiorino, Laura</name>
</author>
<author>
<name>Zhang, Yiming J</name>
</author>
<author>
<name>Palmeri, Joseph R</name>
</author>
<author>
<name>Stinson, Jordan A</name>
</author>
<author>
<name>Duhamel, Lauren R</name>
</author>
<author>
<name>Qureshi, Kashif</name>
</author>
<author>
<name>Suggs, Jack R</name>
</author>
<author>
<name>Porth, Owen T</name>
</author>
<author>
<name>Pinney, William</name>
</author>
<author>
<name>Msari, Riyam Al</name>
</author>
<author>
<name>Walsh, Agnes A</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<author>
<name>Irvine, Darrell J</name>
</author>
<id>https://hdl.handle.net/1721.1/164937</id>
<updated>2026-02-25T07:11:50Z</updated>
<published>2024-08-07T00:00:00Z</published>
<summary type="text">Local delivery of cell surface-targeted immunocytokines programs systemic antitumor immunity
Santollani, Luciano; Maiorino, Laura; Zhang, Yiming J; Palmeri, Joseph R; Stinson, Jordan A; Duhamel, Lauren R; Qureshi, Kashif; Suggs, Jack R; Porth, Owen T; Pinney, William; Msari, Riyam Al; Walsh, Agnes A; Wittrup, K Dane; Irvine, Darrell J
Systemically administered cytokines are potent immunotherapeutics but can cause severe dose-limiting toxicities. To overcome this challenge, cytokines have been engineered for intratumoral retention after local delivery. However, despite inducing regression of treated lesions, tumor-localized cytokines often elicit only modest responses at distal untreated tumors. In the present study, we report a localized cytokine therapy that safely elicits systemic antitumor immunity by targeting the ubiquitous leukocyte receptor CD45. CD45-targeted immunocytokines have lower internalization rates relative to wild-type counterparts, leading to sustained downstream cis and trans signaling between lymphocytes. A single intratumoral dose of αCD45-interleukin (IL)-12 followed by a single dose of αCD45-IL-15 eradicated treated tumors and untreated distal lesions in multiple syngeneic mouse tumor models without toxicity. Mechanistically, CD45-targeted cytokines reprogrammed tumor-specific CD8+ T cells in the tumor-draining lymph nodes to have an antiviral transcriptional signature. CD45 anchoring represents a broad platform for protein retention by host immune cells for use in immunotherapy.
</summary>
<dc:date>2024-08-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tumor Integrin-Targeted Glucose Oxidase Enzyme Promotes ROS-Mediated Cell Death that Combines with Interferon Alpha Therapy for Tumor Control</title>
<link href="https://hdl.handle.net/1721.1/164936" rel="alternate"/>
<author>
<name>Stinson, Jordan A</name>
</author>
<author>
<name>Sheen, Allison</name>
</author>
<author>
<name>Lax, Brianna M</name>
</author>
<author>
<name>Yang, Grace N</name>
</author>
<author>
<name>Duhamel, Lauren</name>
</author>
<author>
<name>Santollani, Luciano</name>
</author>
<author>
<name>Fink, Elizabeth</name>
</author>
<author>
<name>Palmeri, Joseph R</name>
</author>
<author>
<name>Wittrup, Karl Dane</name>
</author>
<id>https://hdl.handle.net/1721.1/164936</id>
<updated>2026-02-25T07:12:00Z</updated>
<published>2025-01-02T00:00:00Z</published>
<summary type="text">Tumor Integrin-Targeted Glucose Oxidase Enzyme Promotes ROS-Mediated Cell Death that Combines with Interferon Alpha Therapy for Tumor Control
Stinson, Jordan A; Sheen, Allison; Lax, Brianna M; Yang, Grace N; Duhamel, Lauren; Santollani, Luciano; Fink, Elizabeth; Palmeri, Joseph R; Wittrup, Karl Dane
Although heightened intratumoral levels of reactive oxygen species (ROS) are typically associated with a suppressive tumor microenvironment, under certain conditions ROS contribute to tumor elimination. Treatment approaches, including some chemotherapy and radiation protocols, increase cancer cell ROS levels that influence their mechanism of cell death and subsequent recognition by the immune system. Furthermore, activated myeloid cells rapidly generate ROS upon encounter with pathogens or infected cells to eliminate disease, and recently, this effector function has been noted in cancer contexts as well. Collectively, ROS-induced cancer cell death may help initiate adaptive antitumor immune responses that could synergize with current approved immunotherapies, for improved control of solid tumors. In this work, we explore the use of glucose oxidase, an enzyme which produces hydrogen peroxide, a type of ROS, to therapeutically mimic the endogenous oxidative burst from myeloid cells to promote antigen generation within the tumor microenvironment. We engineer the enzyme to target pan-tumor-expressed integrins both as a tumor-agnostic therapeutic approach and as a strategy to prolong local enzyme activity following intratumoral administration. We found the targeted enzyme potently induced cancer cell death and enhanced cross-presentation by dendritic cells in vitro and further combined with interferon alpha for long-term tumor control in murine MC38 tumors in vivo. Optimizing the single-dose administration of this enzyme overcomes limitations with immunogenicity noted for other prooxidant enzyme approaches. Overall, our results suggest ROS-induced cell death can be harnessed for tumor control and highlight the potential use of designed enzyme therapies alongside immunotherapy against cancer.
</summary>
<dc:date>2025-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Yeast as a tool for exploring disulfide-rich peptides</title>
<link href="https://hdl.handle.net/1721.1/164935" rel="alternate"/>
<author>
<name>Yap, Kuok</name>
</author>
<author>
<name>Porth, Owen T</name>
</author>
<author>
<name>Xie, Jing</name>
</author>
<author>
<name>Wang, Conan K</name>
</author>
<author>
<name>Durek, Thomas</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<author>
<name>Craik, David J</name>
</author>
<id>https://hdl.handle.net/1721.1/164935</id>
<updated>2026-02-25T07:12:01Z</updated>
<published>2025-12-18T00:00:00Z</published>
<summary type="text">Yeast as a tool for exploring disulfide-rich peptides
Yap, Kuok; Porth, Owen T; Xie, Jing; Wang, Conan K; Durek, Thomas; Wittrup, K Dane; Craik, David J
Cyclic disulfide-rich peptides have become increasingly popular in drug development because their structures enhance molecular stability and allow for mutagenesis to introduce non-native functions. This review focuses on yeast-based platform technologies and their utility in advancing cyclic disulfide-rich peptides as drug modalities and for large-scale biomanufacturing. These technologies include yeast surface display which facilitates the screening of large libraries to develop peptide binders with strong affinity and selectivity for protein targets, while maintaining the innate high stability of the peptide scaffold via protease-based selection pressure. We also describe a recently developed platform that leverages yeast’s ability to secrete correctly folded disulfide-rich peptides while simultaneously displaying peptide or protein tags on their surfaces. In combination with microfluidics technology, the platform creates single-cell yeast-in-droplets reactors, enabling the screening of large libraries based on functional output rather than solely on binding affinity. After identifying cyclic peptide candidates through library-based discovery, these candidates can be produced using a versatile yeast-based bioproduction platform. Traditionally, cyclic disulfide-rich peptides are produced through solid-phase synthesis, a method that generates significant amounts of toxic waste. In contrast, yeast-based bioproduction offers an environmentally sustainable alternative. It has the capability to produce structurally distinct peptides with minimal adjustments and is easily scalable using microbial fermenters, making it an ideal choice for large-scale production.
</summary>
<dc:date>2025-12-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Aligning supply chain design for boosting resilience</title>
<link href="https://hdl.handle.net/1721.1/164934" rel="alternate"/>
<author>
<name>Sáenz, María Jesús</name>
</author>
<author>
<name>Revilla, Elena</name>
</author>
<author>
<name>Acero, Beatriz</name>
</author>
<id>https://hdl.handle.net/1721.1/164934</id>
<updated>2026-02-25T07:12:02Z</updated>
<published>2018-05-01T00:00:00Z</published>
<summary type="text">Aligning supply chain design for boosting resilience
Sáenz, María Jesús; Revilla, Elena; Acero, Beatriz
Many researchers have analyzed the effect of disruptive events, such as natural disasters and economic and market forces, on global supply chains. However, there is a lack of consensus on delineating a universal collection of supply chain risk management practices that will help companies operate in a global market with large-scale disruptions. In this article, we present an analysis, in conjunction with a worldwide online survey, based on successful global brands and their supply chains. We propose a framework that deploys the dynamics of building supply chain resilience, first linking the design of the supply chain portfolio (local versus global scope, as well as strategic responsiveness versus cost reduction) with supply chain vulnerabilities (external versus internal). We describe the transition between different supply chain structures as a way of coping with disruptions and thus proactively developing resilience. In this article, we introduce both a supply chain risk management approach and the reactive-by-deployment mode, as illustrated by successful global company examples.
</summary>
<dc:date>2018-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Pennies, Penny Pools</title>
<link href="https://hdl.handle.net/1721.1/164933" rel="alternate"/>
<author>
<name>Bucciarelli, Louis</name>
</author>
<id>https://hdl.handle.net/1721.1/164933</id>
<updated>2026-02-25T03:01:14Z</updated>
<published>2026-02-24T00:00:00Z</published>
<summary type="text">Pennies, Penny Pools
Bucciarelli, Louis
On Feburay 25, 2025, our president ordered the US Treasury to cease minting pennies. In this essay, I recount how members in Congress have tried to legislate the same - calling for rounding to the nearest nickel - but have not succeeded, some fearing that prevailing price structures (e.g., $xx.89) would leave customers on the short end of the stick over time with rounding up (customer loses) being more prevalent than rounding down (customer wins). I analyze the situation, then suggest how a “penny pool” might be used by retailers to ease the transition to a just and fair penny-less society.
</summary>
<dc:date>2026-02-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Directed evolution-based discovery of ligands for in vivo restimulation of chimeric antigen receptor T cells</title>
<link href="https://hdl.handle.net/1721.1/164932" rel="alternate"/>
<author>
<name>Grzywa, Tomasz M</name>
</author>
<author>
<name>Neeser, Alexandra</name>
</author>
<author>
<name>Ramasubramanian, Ranjani</name>
</author>
<author>
<name>Romanov, Anna</name>
</author>
<author>
<name>Tannir, Ryan</name>
</author>
<author>
<name>Mehta, Naveen K</name>
</author>
<author>
<name>Cossette, Benjamin</name>
</author>
<author>
<name>Morgan, Duncan M</name>
</author>
<author>
<name>Goncalves, Beatriz</name>
</author>
<author>
<name>Sukaj, Ina</name>
</author>
<author>
<name>Bergaggio, Elisa</name>
</author>
<author>
<name>Kadauke, Stephan</name>
</author>
<author>
<name>Myers, Regina M</name>
</author>
<author>
<name>Paruzzo, Luca</name>
</author>
<author>
<name>Ghilardi, Guido</name>
</author>
<author>
<name>Cozzone, Austin</name>
</author>
<author>
<name>Schuster, Stephen J</name>
</author>
<author>
<name>Frey, Noelle</name>
</author>
<author>
<name>Zhang, Libin</name>
</author>
<author>
<name>Yousefpour, Parisa</name>
</author>
<author>
<name>Abraham, Wuhbet</name>
</author>
<author>
<name>Suh, Heikyung</name>
</author>
<author>
<name>Ruella, Marco</name>
</author>
<author>
<name>Grupp, Stephan A</name>
</author>
<author>
<name>Chiarle, Roberto</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<author>
<name>Ma, Leyuan</name>
</author>
<author>
<name>Irvine, Darrell J</name>
</author>
<id>https://hdl.handle.net/1721.1/164932</id>
<updated>2026-04-24T03:15:27Z</updated>
<published>2025-08-25T00:00:00Z</published>
<summary type="text">Directed evolution-based discovery of ligands for in vivo restimulation of chimeric antigen receptor T cells
Grzywa, Tomasz M; Neeser, Alexandra; Ramasubramanian, Ranjani; Romanov, Anna; Tannir, Ryan; Mehta, Naveen K; Cossette, Benjamin; Morgan, Duncan M; Goncalves, Beatriz; Sukaj, Ina; Bergaggio, Elisa; Kadauke, Stephan; Myers, Regina M; Paruzzo, Luca; Ghilardi, Guido; Cozzone, Austin; Schuster, Stephen J; Frey, Noelle; Zhang, Libin; Yousefpour, Parisa; Abraham, Wuhbet; Suh, Heikyung; Ruella, Marco; Grupp, Stephan A; Chiarle, Roberto; Wittrup, K Dane; Ma, Leyuan; Irvine, Darrell J
Chimeric antigen receptor (CAR) T cell therapy targeting CD19 elicits remarkable clinical efficacy in B cell malignancies, but many patients relapse owing to failed expansion and/or progressive loss of CAR-T cells. We recently reported a strategy to potently restimulate CAR-T cells in vivo, enhancing their functionality by administration of a vaccine-like stimulus comprised of surrogate peptide ligands for a CAR linked to a lymph node-targeting amphiphilic PEG-lipid (amph-vax). Here we demonstrate a general strategy to discover and optimize peptide mimotopes enabling amph-vax generation for any CAR. We use yeast surface display to identify peptide binders to FMC63 (the scFv used in clinical CD19 CARs), which are then subsequently affinity matured by directed evolution. CAR-T vaccines using these optimized mimotopes triggered marked expansion and memory development of CD19 CAR-T cells in both syngeneic and humanized mouse models of B-acute lymphoblastic leukaemia/lymphoma, and enhanced control of disease progression compared with CD19 CAR-T-only-treated mice. This approach enables amph-vax boosting to be applied to any clinically relevant CAR-T cell product.
</summary>
<dc:date>2025-08-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Machine learning prediction of antibody aggregation and viscosity for high concentration formulation development of protein therapeutics</title>
<link href="https://hdl.handle.net/1721.1/164931" rel="alternate"/>
<author>
<name>Lai, Pin-Kuang</name>
</author>
<author>
<name>Gallegos, Austin</name>
</author>
<author>
<name>Mody, Neil</name>
</author>
<author>
<name>Sathish, Hasige A</name>
</author>
<author>
<name>Trout, Bernhardt L</name>
</author>
<id>https://hdl.handle.net/1721.1/164931</id>
<updated>2026-04-14T03:39:12Z</updated>
<published>2022-01-25T00:00:00Z</published>
<summary type="text">Machine learning prediction of antibody aggregation and viscosity for high concentration formulation development of protein therapeutics
Lai, Pin-Kuang; Gallegos, Austin; Mody, Neil; Sathish, Hasige A; Trout, Bernhardt L
Machine learning has been recently used to predict therapeutic antibody aggregation rates and viscosity at high concentrations (150 mg/ml). These works focused on commercially available antibodies, which may have been optimized for stability. In this study, we measured accelerated aggregation rates at 45°C and viscosity at 150 mg/ml for 20 preclinical and clinical-stage antibodies. Features obtained from molecular dynamics simulations of the full-length antibody and sequences were used for machine learning model construction. We found a k-nearest neighbors regression model with two features, spatial positive charge map on the CDRH2 and solvent-accessible surface area of hydrophobic residues on the variable fragment, gives the best performance for predicting antibody aggregation rates (r = 0.89). For the viscosity classification model, the model with the highest accuracy is a logistic regression model with two features, spatial negative charge map on the heavy chain variable region and spatial negative charge map on the light chain variable region. The accuracy and the area under precision recall curve of the classification model from validation tests are 0.86 and 0.70, respectively. In addition, we combined data from another 27 commercial mAbs to develop a viscosity predictive model. The best model is a logistic regression model with two features, number of hydrophobic residues on the light chain variable region and net charges on the light chain variable region. The accuracy and the area under precision recall curve of the classification model are 0.85 and 0.6, respectively. The aggregation rates and viscosity models can be used to predict antibody stability to facilitate pharmaceutical development.
</summary>
<dc:date>2022-01-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Enhanced O-glycosylation site prediction using explainable machine learning technique with spatial local environment</title>
<link href="https://hdl.handle.net/1721.1/164930" rel="alternate"/>
<author>
<name>Hong, Seokyoung</name>
</author>
<author>
<name>Chattaraj, Krishna Gopal</name>
</author>
<author>
<name>Guo, Jing</name>
</author>
<author>
<name>Trout, Bernhardt L</name>
</author>
<author>
<name>Braatz, Richard D</name>
</author>
<id>https://hdl.handle.net/1721.1/164930</id>
<updated>2026-04-14T03:39:12Z</updated>
<published>2025-02-04T00:00:00Z</published>
<summary type="text">Enhanced O-glycosylation site prediction using explainable machine learning technique with spatial local environment
Hong, Seokyoung; Chattaraj, Krishna Gopal; Guo, Jing; Trout, Bernhardt L; Braatz, Richard D
Motivation: The accurate prediction of O-GlcNAcylation sites is crucial for understanding disease mechanisms and developing effective treatments. Previous machine learning (ML) models primarily relied on primary or secondary protein structural and related properties, which have&#13;
limitations in capturing the spatial interactions of neighboring amino acids. This study introduces local environmental features as a novel approach that incorporates three-dimensional spatial information, significantly improving model performance by considering the spatial context&#13;
around the target site. Additionally, we utilize sparse recurrent neural networks to effectively capture sequential nature of the proteins and to&#13;
identify key factors influencing O-GlcNAcylation as an explainable ML model.&#13;
Results: Our findings demonstrate the effectiveness of our proposed features with the model achieving an F1 score of 28.3%, as well as feature selection capability with the model using only the top 20% of features achieving the highest F1 score of 32.02%, a 1.4-fold improvement&#13;
over existing PTM models. Statistical analysis of the top 20 features confirmed their consistency with literature. This method not only boosts&#13;
prediction accuracy but also paves the way for further research in understanding and targeting O-GlcNAcylation.&#13;
Availability and implementation: The entire code, data, features used in this study are available in the GitHub repository: https://github.com/&#13;
pseokyoung/o-glcnac-
</summary>
<dc:date>2025-02-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Leveraging microtopography to pattern multi-oriented muscle actuators</title>
<link href="https://hdl.handle.net/1721.1/164929" rel="alternate"/>
<author>
<name>Rossy, Tamara</name>
</author>
<author>
<name>Schwendeman, Laura</name>
</author>
<author>
<name>Kohli, Sonika</name>
</author>
<author>
<name>Bawa,  Maheera</name>
</author>
<author>
<name>Umashankar,  Pavankumar</name>
</author>
<author>
<name>Habba, Roi</name>
</author>
<author>
<name>Tchaicheeyan, Oren</name>
</author>
<author>
<name>Lesmanbc,  Ayelet</name>
</author>
<author>
<name>Raman, Ritu</name>
</author>
<id>https://hdl.handle.net/1721.1/164929</id>
<updated>2026-02-20T03:08:08Z</updated>
<published>2025-03-14T00:00:00Z</published>
<summary type="text">Leveraging microtopography to pattern multi-oriented muscle actuators
Rossy, Tamara; Schwendeman, Laura; Kohli, Sonika; Bawa,  Maheera; Umashankar,  Pavankumar; Habba, Roi; Tchaicheeyan, Oren; Lesmanbc,  Ayelet; Raman, Ritu
Engineering skeletal muscle tissue with precisely defined alignment is of significant importance for applications ranging from drug screening to biohybrid robotics. Aligning 2D contractile muscle monolayers, which are compatible with high-content imaging and can be deployed in planar soft robots, typically requires micropatterned cues. However, current protocols for integrating microscale topographical features in extracellular matrix hydrogels require expensive microfabrication equipment and multi-step procedures involving error-prone manual handling steps. To address this challenge, we present STAMP (simple templating of actuators via micro-topographical patterning), an easily accessible and cost-effective one-step method to pattern microtopography of various sizes and configurations on the surface of hydrogels using reusable 3D printed stamps. We demonstrate that STAMP enables precisely controlling the alignment of mouse and human skeletal muscle fibers without negatively impacting their maturation or function. To showcase the versatility of our technique, we designed a planar soft robot inspired by the iris, which leverages spatially segregated regions of concentric and radial muscle fibers to control pupil dilation. Optogenetic skeletal muscle fibers grown on a STAMPed iris substrates formed a multi-oriented actuator, and selective light stimulation of the radial and concentric fibers was used to control the function of the iris, including pupil constriction. Computational modeling of the biohybrid robot as an active bilayer matched experimental outcomes, showcasing the robustness of our STAMP method for designing, fabricating, and testing planar biohybrid robots capable of complex multi-DOF motion.
</summary>
<dc:date>2025-03-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Enhancing Spray Retention Using Cloaked Droplets to Reduce Pesticide Pollution</title>
<link href="https://hdl.handle.net/1721.1/164928" rel="alternate"/>
<author>
<name>Jayaprakash, Vishnu</name>
</author>
<author>
<name>Rufer, Simon</name>
</author>
<author>
<name>Panata, Sreedath</name>
</author>
<author>
<name>Varanasi,  Kripa K.</name>
</author>
<id>https://hdl.handle.net/1721.1/164928</id>
<updated>2026-02-20T03:08:05Z</updated>
<published>2025-03-25T00:00:00Z</published>
<summary type="text">Enhancing Spray Retention Using Cloaked Droplets to Reduce Pesticide Pollution
Jayaprakash, Vishnu; Rufer, Simon; Panata, Sreedath; Varanasi,  Kripa K.
Enhancing agrochemical spray retention on plant surfaces would have tremendous benefits to global health and the environment. The bouncing of sprayed pesticide droplets from hydrophobic leaves is a major source of water and soil pollution, and the resultant overuse of pesticides is a human health hazard and a financial burden for farmers. Here we report on the development of sustainable agricultural sprays consisting of cloaked droplets that significantly enhance droplet retention on plant surfaces. By leveraging wetting dynamics, we create cloaked droplets that consist of an ultra-thin food and environmentally safe oil layer (&lt;1% by volume) that encapsulates water droplets. We develop a fundamental understanding of the dynamics of cloaked droplet impact and retention on superhydrophobic surfaces. Using high-speed imaging, we capture how the oil cloak transforms into a wetting ridge that pins the droplets and suppresses their rebound. We span a wide range of impact conditions, oils, oil viscosities, and oil volume fractions to demonstrate the robustness of the approach. By considering a balance of kinetic energy, the work of adhesion, and viscous dissipation in this four-phase system, we develop a physical model that allows us to establish a regime map for rebound suppression. Finally, these findings are implemented into a prototype sprayer which leads to a ∼5-fold reduction in spray waste on crop leaves. We believe that our spray approach can greatly reduce agrochemical pollution as well as pesticide and surfactant usage.
</summary>
<dc:date>2025-03-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Total Synthesis and 13C NMR Revision of Nagelamide C</title>
<link href="https://hdl.handle.net/1721.1/164927" rel="alternate"/>
<author>
<name>Tong, Guanghu</name>
</author>
<author>
<name>Nguyen, Long V.</name>
</author>
<author>
<name>Jamison, Timothy F.</name>
</author>
<id>https://hdl.handle.net/1721.1/164927</id>
<updated>2026-02-20T03:08:04Z</updated>
<published>2025-06-04T00:00:00Z</published>
<summary type="text">Total Synthesis and 13C NMR Revision of Nagelamide C
Tong, Guanghu; Nguyen, Long V.; Jamison, Timothy F.
Nagelamide C (1), a dimeric pyrrole–imidazole alkaloid, exhibits antimicrobial and antibacterial activities. We demonstrate herein the first total synthesis of nagelamide C. This concise work was enabled by a series of significant transformations featuring: an imidazole benzylic Wittig olefination, a site selective bromination, and a regioselective trans-hydrostannylation/Stille coupling to construct a unique trisubstituted olefin. In addition, we show the original 13C NMR data of nagelamide C to be in error and revise the data.
</summary>
<dc:date>2025-06-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Symmetry-Constrained Generation of Diverse Low-Bandgap Molecules with Monte Carlo Tree Search</title>
<link href="https://hdl.handle.net/1721.1/164926" rel="alternate"/>
<author>
<name>Subramanian,  Akshay</name>
</author>
<author>
<name>Damewood,  James</name>
</author>
<author>
<name>Nam,  Juno</name>
</author>
<author>
<name>Greenman,  Kevin P.</name>
</author>
<author>
<name>Singhal, Avni P.</name>
</author>
<author>
<name>Gómez-Bombarelli, Rafael</name>
</author>
<id>https://hdl.handle.net/1721.1/164926</id>
<updated>2026-02-20T03:08:03Z</updated>
<published>2025-05-12T00:00:00Z</published>
<summary type="text">Symmetry-Constrained Generation of Diverse Low-Bandgap Molecules with Monte Carlo Tree Search
Subramanian,  Akshay; Damewood,  James; Nam,  Juno; Greenman,  Kevin P.; Singhal, Avni P.; Gómez-Bombarelli, Rafael
Organic optoelectronic materials are a promising avenue for next-generation electronic devices due to their solution processability, mechanical flexibility, and tunable electronic properties. In particular, near-infrared (NIR) sensitive molecules have unique applications in night-vision equipment and biomedical imaging. Molecular engineering has played a crucial role in developing non-fullerene acceptors (NFAs) such as the Y-series molecules, which feature a rigid fused-ring electron donor core flanked by electron-deficient end groups, leading to strong intramolecular charge-transfer and extended absorption into the NIR region. However, systematically designing molecules with targeted optoelectronic properties while ensuring synthetic accessibility remains a challenge. To address this, we leverage structural priors from domain-focused, patent-mined datasets of organic electronic molecules using a symmetry-aware fragment decomposition algorithm and a fragment-constrained Monte Carlo Tree Search (MCTS) generator. Our approach generates candidates that retain symmetry constraints from the patent dataset, while also exhibiting red-shifted absorption, as validated by TD-DFT calculations.
</summary>
<dc:date>2025-05-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Molecular analysis and design using generative artificial intelligence via multi-agent modeling</title>
<link href="https://hdl.handle.net/1721.1/164925" rel="alternate"/>
<author>
<name>Stewart, Isabella</name>
</author>
<author>
<name>Buehler, Markus J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164925</id>
<updated>2026-02-20T03:08:09Z</updated>
<published>2025-01-24T00:00:00Z</published>
<summary type="text">Molecular analysis and design using generative artificial intelligence via multi-agent modeling
Stewart, Isabella; Buehler, Markus J.
We report the use of a multiagent generative artificial intelligence framework, the X-LoRA-Gemma large language model (LLM), to analyze, design and test molecular design. The X-LoRA-Gemma model, inspired by biological principles and featuring 7 billion parameters, dynamically reconfigures its structure through a dual-pass inference strategy to enhance its problem-solving abilities across diverse scientific domains. The model is used to first identify molecular engineering targets through a systematic human–AI and AI–AI self-driving multi-agent approach to elucidate key targets for molecular optimization to improve interactions between molecules. Next, a multi-agent generative design process is used that includes rational steps, reasoning and autonomous knowledge extraction. Target properties of the molecule are identified either using a principal component analysis (PCA) of key molecular properties or sampling from the distribution of known molecular properties. The model is then used to generate a large set of candidate molecules, which are analyzed via their molecular structure, charge distribution, and other features. We validate that as predicted, increased dipole moment and polarizability is indeed achieved in the designed molecules. We anticipate an increasing integration of these techniques into the molecular engineering workflow, ultimately enabling the development of innovative solutions to address a wide range of societal challenges. We conclude with a critical discussion of challenges and opportunities of the use of multi-agent generative AI for molecular engineering, analysis and design.
</summary>
<dc:date>2025-01-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Automated fast-flow synthesis of the immune checkpoint receptors PD-1 and PD-L1</title>
<link href="https://hdl.handle.net/1721.1/164924" rel="alternate"/>
<author>
<name>Fittolani,  Giulio</name>
</author>
<author>
<name>Callahan, Alex J.</name>
</author>
<author>
<name>Loas, Andrei</name>
</author>
<author>
<name>Pentelute, Bradley L.</name>
</author>
<id>https://hdl.handle.net/1721.1/164924</id>
<updated>2026-02-20T03:08:10Z</updated>
<published>2025-03-17T00:00:00Z</published>
<summary type="text">Automated fast-flow synthesis of the immune checkpoint receptors PD-1 and PD-L1
Fittolani,  Giulio; Callahan, Alex J.; Loas, Andrei; Pentelute, Bradley L.
Programmed cell death protein 1 (PD-1) and programmed cell death ligand 1 (PD-L1) are key targets for cancer therapy. Here, we use automated fast-flow peptide synthesis (AFPS) to rapidly produce these challenging β-sheet-rich proteins in their active forms following oxidative refolding protocols. The methods presented here provide rapid access to synthetic, air-stable mutants of PD-1 and PD-L1 in which L-methionine residues are substituted with L-norleucine, potentially enabling investigation of post-translational modifications and mirror-image analogs for drug discovery.
</summary>
<dc:date>2025-03-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Geology of Deception Gulch and the Verde Central mine</title>
<link href="https://hdl.handle.net/1721.1/164923" rel="alternate"/>
<author>
<name>Benedict, P. C.
            (Platt Carrico),
            1900-1969.</name>
</author>
<id>https://hdl.handle.net/1721.1/164923</id>
<updated>2026-02-20T03:04:15Z</updated>
<published>1923-01-01T00:00:00Z</published>
<summary type="text">Geology of Deception Gulch and the Verde Central mine
Benedict, P. C.
            (Platt Carrico),
            1900-1969.
Thesis: M.S., Massachusetts Institute of Technology, Department of Geology and Geophysics, 1923
</summary>
<dc:date>1923-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Structural geology of Eastern Massachusetts</title>
<link href="https://hdl.handle.net/1721.1/164922" rel="alternate"/>
<author>
<name>Ilsley, Ralph,
            1896-</name>
</author>
<id>https://hdl.handle.net/1721.1/164922</id>
<updated>2026-02-20T03:02:14Z</updated>
<published>1934-01-01T00:00:00Z</published>
<summary type="text">Structural geology of Eastern Massachusetts
Ilsley, Ralph,
            1896-
Thesis: Sc. D., Massachusetts Institute of Technology, Department of Geology, 1934; Vita.
</summary>
<dc:date>1934-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The design of a hydraulic draft gear for railway passenger cars</title>
<link href="https://hdl.handle.net/1721.1/164921" rel="alternate"/>
<author>
<name>Pearson, Harry L.</name>
</author>
<author>
<name>McGrady, Charles T.</name>
</author>
<id>https://hdl.handle.net/1721.1/164921</id>
<updated>2026-02-20T03:05:00Z</updated>
<published>1922-01-01T00:00:00Z</published>
<summary type="text">The design of a hydraulic draft gear for railway passenger cars
Pearson, Harry L.; McGrady, Charles T.
Thesis: B.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1922; Includes bibliographical references.
</summary>
<dc:date>1922-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A study of "Chu-Ma" as a textile fiber</title>
<link href="https://hdl.handle.net/1721.1/164920" rel="alternate"/>
<author>
<name>Chou, Cheng Yu,
            1901-</name>
</author>
<author>
<name>Hsueh, Tsu Kang.</name>
</author>
<id>https://hdl.handle.net/1721.1/164920</id>
<updated>2026-02-20T03:04:57Z</updated>
<published>1924-01-01T00:00:00Z</published>
<summary type="text">A study of "Chu-Ma" as a textile fiber
Chou, Cheng Yu,
            1901-; Hsueh, Tsu Kang.
Thesis: B.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1924
</summary>
<dc:date>1924-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The transportation decision making process in metropolitan Boston</title>
<link href="https://hdl.handle.net/1721.1/164919" rel="alternate"/>
<author>
<name>Zinner, Richard Mark.</name>
</author>
<id>https://hdl.handle.net/1721.1/164919</id>
<updated>2026-02-20T03:04:52Z</updated>
<published>1967-01-01T00:00:00Z</published>
<summary type="text">The transportation decision making process in metropolitan Boston
Zinner, Richard Mark.
Thesis: B.S., Massachusetts Institute of Technology, Department of Political Science, 1967; One unnumbered page inserted.; Bibliography: leaf 74.
</summary>
<dc:date>1967-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Oscillographic presentation of impedances on the reflection-coefficient plane</title>
<link href="https://hdl.handle.net/1721.1/164918" rel="alternate"/>
<author>
<name>Eckhart, Myron.</name>
</author>
<author>
<name>Fowler, Earl Bealle.</name>
</author>
<id>https://hdl.handle.net/1721.1/164918</id>
<updated>2026-02-20T03:04:47Z</updated>
<published>1949-01-01T00:00:00Z</published>
<summary type="text">Oscillographic presentation of impedances on the reflection-coefficient plane
Eckhart, Myron.; Fowler, Earl Bealle.
Thesis: B.S., Massachusetts Institute of Technology, Department of Electrical Engineering, 1949
</summary>
<dc:date>1949-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Radiation transfer in massive binary x-ray systems</title>
<link href="https://hdl.handle.net/1721.1/164917" rel="alternate"/>
<author>
<name>Lewis, Wayne Lloyd.</name>
</author>
<id>https://hdl.handle.net/1721.1/164917</id>
<updated>2026-02-20T03:02:25Z</updated>
<published>1991-01-01T00:00:00Z</published>
<summary type="text">Radiation transfer in massive binary x-ray systems
Lewis, Wayne Lloyd.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Physics, 1991; Includes bibliographical references (leaves 167-173).
</summary>
<dc:date>1991-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Laser induced photoionization of helium</title>
<link href="https://hdl.handle.net/1721.1/164916" rel="alternate"/>
<author>
<name>Lewis, Wayne Lloyd.</name>
</author>
<id>https://hdl.handle.net/1721.1/164916</id>
<updated>2026-02-20T03:04:45Z</updated>
<published>1980-01-01T00:00:00Z</published>
<summary type="text">Laser induced photoionization of helium
Lewis, Wayne Lloyd.
Thesis: B.S., Massachusetts Institute of Technology, Department of Physics, 1980; Includes bibliographical references.
</summary>
<dc:date>1980-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Nonlinear elastic analysis of reinforced concrete structures by the finite element method</title>
<link href="https://hdl.handle.net/1721.1/164915" rel="alternate"/>
<author>
<name>Tulga, Said Şahin.</name>
</author>
<id>https://hdl.handle.net/1721.1/164915</id>
<updated>2026-02-20T03:04:07Z</updated>
<published>1979-01-01T00:00:00Z</published>
<summary type="text">Nonlinear elastic analysis of reinforced concrete structures by the finite element method
Tulga, Said Şahin.
Thesis: M.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1979; Includes bibliographical references.
</summary>
<dc:date>1979-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Subcontractor bidding strategy</title>
<link href="https://hdl.handle.net/1721.1/164914" rel="alternate"/>
<author>
<name>Gilbane, Thomas Freeman.</name>
</author>
<id>https://hdl.handle.net/1721.1/164914</id>
<updated>2026-02-20T03:04:10Z</updated>
<published>1975-01-01T00:00:00Z</published>
<summary type="text">Subcontractor bidding strategy
Gilbane, Thomas Freeman.
Thesis: M.S., Massachusetts Institute of Technology, Department of Civil Engineering, 1975; Bibliography: leaves 104-105.
</summary>
<dc:date>1975-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Petrography and geology of the Shoshone mining region in northwestern Wyoming</title>
<link href="https://hdl.handle.net/1721.1/164913" rel="alternate"/>
<author>
<name>Benedict, P. C.
            (Platt Carrico),
            1900-1969.</name>
</author>
<id>https://hdl.handle.net/1721.1/164913</id>
<updated>2026-02-20T03:04:35Z</updated>
<published>1922-01-01T00:00:00Z</published>
<summary type="text">Petrography and geology of the Shoshone mining region in northwestern Wyoming
Benedict, P. C.
            (Platt Carrico),
            1900-1969.
Thesis: B.S., Massachusetts Institute of Technology, Department of Geology, 1922
</summary>
<dc:date>1922-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>GeoXCP: uncertainty quantification of spatial explanations in explainable AI</title>
<link href="https://hdl.handle.net/1721.1/164912" rel="alternate"/>
<author>
<name>Lou, Xiayin</name>
</author>
<author>
<name>Luo, Peng</name>
</author>
<author>
<name>Li, Ziqi</name>
</author>
<author>
<name>Gao, Song</name>
</author>
<author>
<name>Meng, Liqiu</name>
</author>
<id>https://hdl.handle.net/1721.1/164912</id>
<updated>2026-02-20T03:08:01Z</updated>
<published>2025-10-27T00:00:00Z</published>
<summary type="text">GeoXCP: uncertainty quantification of spatial explanations in explainable AI
Lou, Xiayin; Luo, Peng; Li, Ziqi; Gao, Song; Meng, Liqiu
Understanding and explaining complex geographic phenomena—ranging from climate change to socioeconomic disparities—is a central focus in both geography and the broader scientific community. Various methods have been developed to elucidate relationships between variables, from coefficient estimates in linear regression models to the increasingly dominant use of feature attribution scores in Explainable AI (XAI) techniques. However, explanations generated by XAI methods often carry uncertainty, stemming from the model itself and the data used to train the model. Despite the critical importance of accounting for such uncertainty, this issue remains largely overlooked in the geospatial domain. In this study, we developed an uncertainty quantification framework for XAI explanations based on conformal prediction, termed Geospatial eXplanation Conformal Prediction (GeoXCP). By incorporating spatial dependence into the modeling process, GeoXCP produced spatially adaptive explanations with calibrated uncertainty estimates. We validated the effectiveness of GeoXCP through extensive simulation experiments and real-world datasets. The results demonstrated that GeoXCP provided reliable explanations while effectively quantifying uncertainty across diverse geospatial scenarios. Our approach represented a significant advancement in explainable geospatial machine learning, enabling decision-makers to better assess the trustworthiness of model-driven insights. The proposed framework was implemented in a python package, named GeoXCP.
</summary>
<dc:date>2025-10-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Open-source device for high sensitivity magnetic particle spectroscopy, relaxometry, and hysteresis loop tracing</title>
<link href="https://hdl.handle.net/1721.1/164911" rel="alternate"/>
<author>
<name>Mattingly, E.</name>
</author>
<author>
<name>Barksdale, A. C.</name>
</author>
<author>
<name>Śliwiak, M.</name>
</author>
<author>
<name>Chacon-Caldera, J.</name>
</author>
<author>
<name>Mason, E. E.</name>
</author>
<author>
<name>Wald, L. L.</name>
</author>
<id>https://hdl.handle.net/1721.1/164911</id>
<updated>2026-02-19T04:36:04Z</updated>
<published>2024-06-26T00:00:00Z</published>
<summary type="text">Open-source device for high sensitivity magnetic particle spectroscopy, relaxometry, and hysteresis loop tracing
Mattingly, E.; Barksdale, A. C.; Śliwiak, M.; Chacon-Caldera, J.; Mason, E. E.; Wald, L. L.
Magnetic nanoparticles (MNPs) are used extensively across numerous disciples, with applications including Magnetic Particle Imaging (MPI), targeted hyperthermia, deep brain stimulation, immunoassays, and thermometry. The assessment of MNPs, especially those being designed for MPI, is performed with magnetic particle spectrometers, relaxometers, loop tracers, or similar devices. Despite the many applications and the need for particle assessment, there are few consolidated resources for designing or building such a MNP assessment system. Here, we describe the design and performance of an open-source device capable of spectroscopy, relaxometry, and loop tracing. We show example measurements from the device and quantify the detection sensitivity by measuring a dilution series of Synomag-D 70 nm (from 0.5 mg Fe/ml to 7 ng Fe/ml) with a 10 mT drive field at 23.8 kHz. The device measures 260 pg Fe with SNR = 1 and 1.3 ng at SNR = 5 in spectroscopy mode in under one second of measurement time. The system has a dynamic range of 60 μg to 260 pg Fe without changing the hardware configuration. As an example application, we characterize Synomag-D’s relaxation time constant for drive fields 2–18 mT and compare the magnetization responses of two commonly used MNPs.
</summary>
<dc:date>2024-06-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Precise Fermi level engineering in a topological Weyl semimetal via fast ion implantation</title>
<link href="https://hdl.handle.net/1721.1/164910" rel="alternate"/>
<author>
<name>Mandal, Manasi</name>
</author>
<author>
<name>Chotrattanapituk, Abhijatmedhi</name>
</author>
<author>
<name>Woller, Kevin</name>
</author>
<author>
<name>Wu, Lijun</name>
</author>
<author>
<name>Xu, Haowei</name>
</author>
<author>
<name>Hung, Nguyen Tuan</name>
</author>
<author>
<name>Mao, Nannan</name>
</author>
<author>
<name>Okabe, Ryotaro</name>
</author>
<author>
<name>Boonkird, Artittaya</name>
</author>
<author>
<name>Nguyen, Thanh</name>
</author>
<author>
<name>Drucker, Nathan C</name>
</author>
<author>
<name>Chen, Xiaoqian M</name>
</author>
<author>
<name>Momiki, Takashi</name>
</author>
<author>
<name>Li, Ju</name>
</author>
<author>
<name>Kong, Jing</name>
</author>
<author>
<name>Zhu, Yimei</name>
</author>
<author>
<name>Li, Mingda</name>
</author>
<id>https://hdl.handle.net/1721.1/164910</id>
<updated>2026-02-19T04:36:09Z</updated>
<published>2024-06-25T00:00:00Z</published>
<summary type="text">Precise Fermi level engineering in a topological Weyl semimetal via fast ion implantation
Mandal, Manasi; Chotrattanapituk, Abhijatmedhi; Woller, Kevin; Wu, Lijun; Xu, Haowei; Hung, Nguyen Tuan; Mao, Nannan; Okabe, Ryotaro; Boonkird, Artittaya; Nguyen, Thanh; Drucker, Nathan C; Chen, Xiaoqian M; Momiki, Takashi; Li, Ju; Kong, Jing; Zhu, Yimei; Li, Mingda
The precise controllability of the Fermi level is a critical aspect of quantum materials. For topological Weyl semimetals, there is a pressing need to fine-tune the Fermi level to the Weyl nodes and unlock exotic electronic and optoelectronic effects associated with the divergent Berry curvature. However, in contrast to two-dimensional materials, where the Fermi level can be controlled through various techniques, the situation for bulk crystals beyond laborious chemical doping poses significant challenges. Here, we report the milli-electron-volt (meV) level ultra-fine-tuning of the Fermi level of bulk topological Weyl semimetal tantalum phosphide using accelerator-based high-energy hydrogen implantation and theory-driven planning. By calculating the desired carrier density and controlling the accelerator profiles, the Fermi level can be experimentally fine-tuned from 5 meV below, to 3.8 meV below, to 3.2 meV above the Weyl nodes. High-resolution transmission electron microscopy reveals the crystalline structure is largely maintained under irradiation, while electrical transport indicates that Weyl nodes are preserved and carrier mobility is also largely retained. Our work demonstrates the viability of this generic approach to tune the Fermi level in semimetal systems and could serve to achieve property fine-tuning for other bulk quantum materials with ultrahigh precision.
</summary>
<dc:date>2024-06-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>A facility for cryogenic ion irradiation and in situ characterization of rare-earth barium copper oxide superconducting tapes</title>
<link href="https://hdl.handle.net/1721.1/164909" rel="alternate"/>
<author>
<name>Devitre, AR</name>
</author>
<author>
<name>Fischer, DX</name>
</author>
<author>
<name>Woller, KB</name>
</author>
<author>
<name>Clark, BC</name>
</author>
<author>
<name>Short, MP</name>
</author>
<author>
<name>Whyte, DG</name>
</author>
<author>
<name>Hartwig, ZS</name>
</author>
<id>https://hdl.handle.net/1721.1/164909</id>
<updated>2026-02-19T04:36:11Z</updated>
<published>2024-06-26T00:00:00Z</published>
<summary type="text">A facility for cryogenic ion irradiation and in situ characterization of rare-earth barium copper oxide superconducting tapes
Devitre, AR; Fischer, DX; Woller, KB; Clark, BC; Short, MP; Whyte, DG; Hartwig, ZS
Superconducting magnets based on Rare Earth Barium Copper Oxides (REBCO) offer transformative capabilities in the fields of fusion energy, high energy physics, and space exploration. A challenge shared by these applications is the limited lifetime of REBCO due to radiation damage sustained during operation. Here we present a new ion-beam facility that enables simultaneous cryogenic irradiation and in situ characterization of commercial REBCO tapes. The ion source provides spatially uniform fluxes up to 1018 protons/m2s with kinetic energies up to 3.4 MeV, in addition to helium and higher-Z species. Using this facility, we can induce uniform damage profiles in the first 10–20 µm of REBCO tapes with less than 0.25 appm of hydrogen implanted in REBCO after a dose of 1020 protons/m2. The tape can be held between 20 and 300 K with an accuracy of ±0.1 K and is connected to a four-point probe measuring the critical current, Ic, and critical temperature, Tc, before, during, and after irradiation with transport current ranging from 100 nA to 100 A, and a typical voltage noise less than 0.1 μV. These capabilities are presently used to study the effect of irradiation temperature on REBCO performance change during and after proton bombardment, to assess the possibility of Ic and Tc recovery after irradiation through thermal annealing, and to explore the instantaneous and recoverable suppression of Ic and Tc observed during irradiation.
</summary>
<dc:date>2024-06-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>High temperature stability of regrown and alloyed Ohmic contacts to AlGaN/GaN heterostructure up to 500 °C</title>
<link href="https://hdl.handle.net/1721.1/164908" rel="alternate"/>
<author>
<name>Niroula, John</name>
</author>
<author>
<name>Xie, Qingyun</name>
</author>
<author>
<name>Rajput, Nitul S</name>
</author>
<author>
<name>Darmawi-Iskandar, Patrick K</name>
</author>
<author>
<name>Rahman, Sheikh Ifatur</name>
</author>
<author>
<name>Luo, Shisong</name>
</author>
<author>
<name>Palash, Rafid Hassan</name>
</author>
<author>
<name>Sikder, Bejoy</name>
</author>
<author>
<name>Yuan, Mengyang</name>
</author>
<author>
<name>Yadav, Pradyot</name>
</author>
<author>
<name>Micale, Gillian K</name>
</author>
<author>
<name>Chowdhury, Nadim</name>
</author>
<author>
<name>Zhao, Yuji</name>
</author>
<author>
<name>Rajan, Siddharth</name>
</author>
<author>
<name>Palacios, Tomás</name>
</author>
<id>https://hdl.handle.net/1721.1/164908</id>
<updated>2026-02-19T04:36:06Z</updated>
<published>2024-05-15T00:00:00Z</published>
<summary type="text">High temperature stability of regrown and alloyed Ohmic contacts to AlGaN/GaN heterostructure up to 500 °C
Niroula, John; Xie, Qingyun; Rajput, Nitul S; Darmawi-Iskandar, Patrick K; Rahman, Sheikh Ifatur; Luo, Shisong; Palash, Rafid Hassan; Sikder, Bejoy; Yuan, Mengyang; Yadav, Pradyot; Micale, Gillian K; Chowdhury, Nadim; Zhao, Yuji; Rajan, Siddharth; Palacios, Tomás
This Letter reports the stability of regrown and alloyed Ohmic contacts to AlGaN/GaN-on-Si high electron mobility transistors (HEMTs) for high temperature applications up to 500 °C. Transfer length method (TLM) measurements from 25 to 500 °C in air show that the regrown contacts appear to be stable up to 500 °C during short term (approximately 1 h) testing, while alloyed contacts appear to decrease in contact resistance from 300 to 500 °C though increases in the error bounds due to increase sheet resistance make it difficult to conclude definitely. Additionally, longer term testing shows both technologies remain stable at least up to 48 h at 500 °C, after which the large increase in sheet resistance makes the measurement uncertainty too large to conclude definitively. Advanced microscopy images indicate both the regrown and alloyed contact regions remain structurally intact after prolonged high temperature exposure with no visible degradation in crystallinity or metal composition.
</summary>
<dc:date>2024-05-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optical-pump–terahertz-probe spectroscopy in high magnetic fields with kHz single-shot detection</title>
<link href="https://hdl.handle.net/1721.1/164907" rel="alternate"/>
<author>
<name>Dastrup, Blake S</name>
</author>
<author>
<name>Miedaner, Peter R</name>
</author>
<author>
<name>Zhang, Zhuquan</name>
</author>
<author>
<name>Nelson, Keith A</name>
</author>
<id>https://hdl.handle.net/1721.1/164907</id>
<updated>2026-02-19T04:36:14Z</updated>
<published>2024-03-12T00:00:00Z</published>
<summary type="text">Optical-pump–terahertz-probe spectroscopy in high magnetic fields with kHz single-shot detection
Dastrup, Blake S; Miedaner, Peter R; Zhang, Zhuquan; Nelson, Keith A
We demonstrate optical pump–THz probe (OPTP) spectroscopy with a variable external magnetic field (0–9 T), in which the time-dependent THz signal is measured by echelon-based single-shot detection at a repetition rate of 1 kHz. The method reduces data acquisition times by more than an order of magnitude compared to conventional electro-optic sampling using a scanning delay stage. The approach illustrates the wide applicability of the single-shot measurement approach to non-equilibrium systems that are studied through OPTP spectroscopy, especially in cases where parameters such as magnetic field strength (B) or other experimental parameters are varied. We demonstrate the capabilities of our measurement by performing cyclotron resonance experiments in bulk silicon, where we observe B-field-dependent carrier relaxation and distinct relaxation rates for different carrier types. We use a pair of economical linear array detectors to measure 500 time points on each shot, offering an equivalent performance to camera-based detection with possibilities for higher repetition rates.
</summary>
<dc:date>2024-03-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Validation of the OpenMC Code for Fusion Applications: The FNG-Streaming Benchmark Case</title>
<link href="https://hdl.handle.net/1721.1/164906" rel="alternate"/>
<author>
<name>Segantin, Stefano</name>
</author>
<author>
<name>Ebiwonjumi, Bamidele</name>
</author>
<author>
<name>Peterson, Ethan</name>
</author>
<id>https://hdl.handle.net/1721.1/164906</id>
<updated>2026-02-19T04:36:08Z</updated>
<published>2025-07-04T00:00:00Z</published>
<summary type="text">Validation of the OpenMC Code for Fusion Applications: The FNG-Streaming Benchmark Case
Segantin, Stefano; Ebiwonjumi, Bamidele; Peterson, Ethan
In this work, we benchmark OpenMC against the FNG-ITER streaming experiment. FNG-ITER streaming, a high-quality experiment carried out at the ENEA laboratories in Frascati, Italy, was initially included in SINBAD (Shielding Integral Benchmark Archive and Database). More recently, the benchmark was included in the Compilation of Nuclear Data Experiments for Radiation Characterization as well. It consists of a neutron shielding experiment with a rather complex geometry that constitutes an appropriate validation study for the use of weight windows within OpenMC. Measurements include flux detection via four different types of activation foils divided into three batches and a set of thermoluminescent detectors for nuclear heating. The OpenMC results are in very good agreement with those of MCNP and the experimental measurements, with the majority of the discrepancies within the combined statistical error and experimental uncertainty (less than 10% computed measured discrepancy).
</summary>
<dc:date>2025-07-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Use of Bayesian decision analysis to maximize value in patient-centered randomized clinical trials in Parkinson’s disease</title>
<link href="https://hdl.handle.net/1721.1/164905" rel="alternate"/>
<author>
<name>Chaudhuri, Shomesh E</name>
</author>
<author>
<name>Ben Chaouch, Zied</name>
</author>
<author>
<name>Hauber, Brett</name>
</author>
<author>
<name>Mange, Brennan</name>
</author>
<author>
<name>Zhou, Mo</name>
</author>
<author>
<name>Christopher, Stephanie</name>
</author>
<author>
<name>Bardot, Dawn</name>
</author>
<author>
<name>Sheehan, Margaret</name>
</author>
<author>
<name>Donnelly, Anne</name>
</author>
<author>
<name>McLaughlin, Lauren</name>
</author>
<author>
<name>Caldwell, Brittany</name>
</author>
<author>
<name>Benz, Heather L</name>
</author>
<author>
<name>Ho, Martin</name>
</author>
<author>
<name>Saha, Anindita</name>
</author>
<author>
<name>Gwinn, Katrina</name>
</author>
<author>
<name>Sheldon, Murray</name>
</author>
<author>
<name>Lo, Andrew W</name>
</author>
<id>https://hdl.handle.net/1721.1/164905</id>
<updated>2026-02-19T04:36:13Z</updated>
<published>2025-09-03T00:00:00Z</published>
<summary type="text">Use of Bayesian decision analysis to maximize value in patient-centered randomized clinical trials in Parkinson’s disease
Chaudhuri, Shomesh E; Ben Chaouch, Zied; Hauber, Brett; Mange, Brennan; Zhou, Mo; Christopher, Stephanie; Bardot, Dawn; Sheehan, Margaret; Donnelly, Anne; McLaughlin, Lauren; Caldwell, Brittany; Benz, Heather L; Ho, Martin; Saha, Anindita; Gwinn, Katrina; Sheldon, Murray; Lo, Andrew W
A fixed one-sided significance level of 5% is commonly used to interpret the statistical significance of randomized clinical trial (RCT) outcomes. While it is necessary to reduce the false positive rate, the threshold used could be chosen quantitatively and transparently to specifically reflect patient preferences regarding benefit–risk tradeoffs as well as other considerations. How can patient preferences be explicitly incorporated into RCTs in Parkinson’s disease (PD), and what is the impact on statistical thresholds for device approval? In this analysis, we apply Bayesian decision analysis (BDA) to PD patient preference scores elicited from survey data. BDA allows us to choose a sample size (&#119899;) and significance level (&#120572;) that maximizes the overall expected value to patients of a balanced two-arm fixed-sample RCT, where the expected value is computed under both null and alternative hypotheses. For PD patients who had previously received deep brain stimulation (DBS) treatment, the BDA-optimal significance levels fell between 4.0% and 10.0%, similar to or greater than the traditional value of 5%. Conversely, for patients who had never received DBS, the optimal significance level ranged from 0.2% to 4.4%. In both of these populations, the optimal significance level increased with the severity of the patients’ cognitive and motor function symptoms. By explicitly incorporating patient preferences into clinical trial designs and the regulatory decision-making process, BDA provides a quantitative and transparent approach to combine clinical and statistical significance. For PD patients who have never received DBS treatment, a 5% significance threshold may not be conservative enough to reflect their risk-aversion level. However, this study shows that patients who previously received DBS treatment present a higher tolerance to accept therapeutic risks in exchange for improved efficacy which is reflected in a higher statistical threshold.
</summary>
<dc:date>2025-09-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Choice denied: impact of income and credit-based tenant screening on the Housing Choice Voucher program</title>
<link href="https://hdl.handle.net/1721.1/164904" rel="alternate"/>
<author>
<name>So, Wonyoung</name>
</author>
<author>
<name>Gade, Anisha</name>
</author>
<author>
<name>Hangen, Forrest</name>
</author>
<id>https://hdl.handle.net/1721.1/164904</id>
<updated>2026-02-19T04:35:56Z</updated>
<published>2025-04-30T00:00:00Z</published>
<summary type="text">Choice denied: impact of income and credit-based tenant screening on the Housing Choice Voucher program
So, Wonyoung; Gade, Anisha; Hangen, Forrest
The Housing Choice Voucher program supports over 2.5 million households by subsidizing rent payments within the private housing market. However, challenges arise due to exclusionary practices, undermining the program’s goal of ‘choice.’ Tenant screening practices have been critical in exacerbating these challenges, yet their impact remains understudied. Drawing on tenant screening criteria documents from property management websites and the Survey of Consumer Finances, this study finds that while voucher holders generally meet rent-to-income thresholds due to the subsidies—keeping their rent burden relative to their income, they still face barriers related to credit scores, bankruptcy history, and debt. These criteria, which apply to both voucher and non-voucher renters, may exclude approximately one in ten voucher holders, despite the guaranteed portion of rent covered by public assistance. These findings show an urgent need for policy interventions to the potential exclusionary impacts of tenant screening services.
</summary>
<dc:date>2025-04-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>AgentNexus: Accelerating AI Agent Development and Enhancing Interoperability with MCP</title>
<link href="https://hdl.handle.net/1721.1/164903" rel="alternate"/>
<author>
<name>Yae, Jung</name>
</author>
<author>
<name>Hamilton, Lei</name>
</author>
<id>https://hdl.handle.net/1721.1/164903</id>
<updated>2026-02-18T03:09:03Z</updated>
<published>2026-02-17T00:00:00Z</published>
<summary type="text">AgentNexus: Accelerating AI Agent Development and Enhancing Interoperability with MCP
Yae, Jung; Hamilton, Lei
The DoD faces significant challenges in its pursuit&#13;
of AI superiority, as disparate data and development platforms&#13;
create redundant efforts and limit interoperability. Additionally,&#13;
existing DoD systems are ill-equipped to handle the recent&#13;
paradigm shift toward agentic AI, which requires modern standards&#13;
and tools. To address these gaps, this paper introduces&#13;
AgentNexus, an application designed to streamline the development,&#13;
deployment, and servicing of AI agents. AgentNexus&#13;
provides an application featuring an advanced agents processing&#13;
backend, a scalable service layer, and an intuitive user interface.&#13;
It provides pre-built toolkits, sophisticated RAG pipeline, and&#13;
MCP for enhanced interoperability. The successful development&#13;
of an Education Assistant agent validates the application’s capacity&#13;
to support the rapid implementation of multi-agent workflows.&#13;
By fostering a collaborative and standardized environment,&#13;
AgentNexus mitigates critical barriers of interoperability and&#13;
duplicated effort, accelerating the delivery of multi-agent AI to&#13;
warfighters.
</summary>
<dc:date>2026-02-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Intelligent C-17 Load Planning for Flight Optimization</title>
<link href="https://hdl.handle.net/1721.1/164902" rel="alternate"/>
<author>
<name>McAlister, Catherine</name>
</author>
<author>
<name>Jones, Mathew</name>
</author>
<author>
<name>McConville, Sean</name>
</author>
<id>https://hdl.handle.net/1721.1/164902</id>
<updated>2026-02-18T03:08:58Z</updated>
<published>2026-02-17T00:00:00Z</published>
<summary type="text">Intelligent C-17 Load Planning for Flight Optimization
McAlister, Catherine; Jones, Mathew; McConville, Sean
C-17 Globemaster III cargo capacity is significantly&#13;
underutilized, with many sorties transporting only a few pallets&#13;
despite the aircraft’s 170,900-pound payload capability. Historical&#13;
flight data analysis reveals inefficient scheduling practices that&#13;
increase operational costs, crew workload, and overall negatively&#13;
effect mission capability. This paper details the development&#13;
of an AI-powered optimization model to improve C-17 cargo&#13;
utilization and reduce required flight operations. We analyzed&#13;
historical C-17 transportation data and created both traditional&#13;
optimization algorithms and predictive AI models to determine&#13;
optimal flight scheduling for 3-week operational periods. The AI&#13;
model achieved 97.9% accuracy in predicting optimal flight count&#13;
requirements and 89.3% accuracy in predicting optimal flight&#13;
assignment for specific cargo, representing a 23% reduction in&#13;
total flights and a 15% increase in average cargo utilization.&#13;
These results demonstrate that data-driven flight scheduling&#13;
can significantly improve C-17 operational efficiency, reduce&#13;
costs across the airlift community, and enabling additional time&#13;
towards advanced training, contingency support, and critical&#13;
warfighter operations, ultimately increasing the lethality and&#13;
readiness of the Department of Defense.
</summary>
<dc:date>2026-02-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Securing Intelligence: The Strategic Necessity of Air-Gapped AI Systems in the Age of Cloud-Based LLMs</title>
<link href="https://hdl.handle.net/1721.1/164901" rel="alternate"/>
<author>
<name>Viggh, Herbert</name>
</author>
<author>
<name>Tsagaratos, Jennifer</name>
</author>
<id>https://hdl.handle.net/1721.1/164901</id>
<updated>2026-02-18T03:09:05Z</updated>
<published>2026-02-17T00:00:00Z</published>
<summary type="text">Securing Intelligence: The Strategic Necessity of Air-Gapped AI Systems in the Age of Cloud-Based LLMs
Viggh, Herbert; Tsagaratos, Jennifer
The increasing use of large language models (LLMs)&#13;
in applications, from military strategy to customer service, raises&#13;
concerns about data sovereignty, security, and privacy. Cloudbased&#13;
API models, created by companies such as OpenAI, pose&#13;
significant risks due to training data exposure and prompt&#13;
injection attacks, which can compromise sensitive information&#13;
and hidden biases that could influence reporting or executive&#13;
decision-making processes. Real-world incidents, such as the&#13;
leakage of Samsung’s proprietary source code through ChatGPT,&#13;
highlight the dangers of relying on cloud providers with complete&#13;
visibility into client queries. Furthermore, data localization laws&#13;
and regulations, such as the General Data Protection Regulation&#13;
(GDPR), underscore the risks associated with outsourcing&#13;
intelligence and decision support systems to foreign entities. Airgapped&#13;
AI solutions, which run on isolated networks disconnected&#13;
from the outside world, offer a secure alternative for sensitive&#13;
environments such as national defense, research laboratories,&#13;
and critical infrastructure. By maintaining control over AI&#13;
processes, organizations can ensure information safety, comply&#13;
with regulations, and mitigate risks associated with cloud-based&#13;
AI infrastructure, ultimately safeguarding their data integrity,&#13;
privacy, and operational independence.
</summary>
<dc:date>2026-02-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>RAIMOND Requirements AI for Military Operational Needs Development</title>
<link href="https://hdl.handle.net/1721.1/164900" rel="alternate"/>
<author>
<name>Garcia, Fabio</name>
</author>
<author>
<name>Steilberg, Jackson</name>
</author>
<id>https://hdl.handle.net/1721.1/164900</id>
<updated>2026-02-18T03:09:07Z</updated>
<published>2026-02-17T00:00:00Z</published>
<summary type="text">RAIMOND Requirements AI for Military Operational Needs Development
Garcia, Fabio; Steilberg, Jackson
The Joint Capabilities Integration and Development&#13;
System (JCIDS) was created as a means to overhaul military&#13;
procurement processes. Ideally, the requirements development&#13;
process is meant to take a total of 2-4 years from concept&#13;
to manufacturing. However the actual length of concept development&#13;
is much longer. As a result, technologies that are&#13;
conceptualized through the analytical process often enter the&#13;
acquisition too late to need for the warrior. To reduce the&#13;
lengthy timeline in requirements development, we used Large&#13;
Language Models (LLMs) to conduct the necessary research&#13;
and synthesize documents that abide by strict JCIDS guidelines.&#13;
Prompt engineering can achieve these results as a proof of&#13;
concept. However, the output responses lack the content length&#13;
and depth necessary to pass through the requirements validation&#13;
process. Therefore, a combination of agentic workflows, prompt&#13;
engineering, and sufficient context is needed to achieve the desired&#13;
outcomes. This project utilizes a novel framework to derive&#13;
Capabilities Based Assessments (CBAs) at an approximate 80&#13;
percent readiness level requiring the final steps of validation and&#13;
verification by subject matter experts.
</summary>
<dc:date>2026-02-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Machine Learning for the Enhancement of Adaptive Optics</title>
<link href="https://hdl.handle.net/1721.1/164899" rel="alternate"/>
<author>
<name>Hall, Robert</name>
</author>
<author>
<name>Chen, Justin</name>
</author>
<id>https://hdl.handle.net/1721.1/164899</id>
<updated>2026-02-18T03:09:05Z</updated>
<published>2026-02-17T00:00:00Z</published>
<summary type="text">Machine Learning for the Enhancement of Adaptive Optics
Hall, Robert; Chen, Justin
Optical systems (telescopes, lasers, microscopes,&#13;
etc.) have degraded performance over long distances&#13;
due to scintillation caused by Earth’s atmosphere,&#13;
where adaptive optics (AO) is often used to enhance&#13;
its signal-to-noise (SNR) ratio or image quality. Astronomers&#13;
have found success in laser-based adaptive&#13;
optics where they survey the atmosphere with a laser&#13;
and subtract its effects on the resultant image. Although&#13;
effective in most cases, these systems can be extremely&#13;
costly, are computationally intensive in real time, and&#13;
fall short in some edge cases. We propose an autoencoder/&#13;
decoder and a generalized sequence to sequence&#13;
model (LSTM) as a cost-effective method to off-load&#13;
computational complexity from real time and enhance&#13;
performance in edge cases. This study utilizes four&#13;
simulated datasets of wavefront sensor frames for a&#13;
variety of atmospheric conditions, done in collaboration&#13;
with MIT Lincoln Laboratory [1]–found auto-encoding&#13;
performance just shy of traditional methodology and&#13;
found LSTM performance that predicts well the general&#13;
shape on the WFS, but suffers from scaling issues.
</summary>
<dc:date>2026-02-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>From Hype to Reality: Real-World Lessons and Recommendations for AI in Military Applications</title>
<link href="https://hdl.handle.net/1721.1/164898" rel="alternate"/>
<author>
<name>Lynch, Joshua</name>
</author>
<author>
<name>Niss, Laura</name>
</author>
<id>https://hdl.handle.net/1721.1/164898</id>
<updated>2026-02-18T03:09:06Z</updated>
<published>2026-02-17T00:00:00Z</published>
<summary type="text">From Hype to Reality: Real-World Lessons and Recommendations for AI in Military Applications
Lynch, Joshua; Niss, Laura
The current use cases, limitations, and future capacity&#13;
of large language models (LLMs) as assistants to military&#13;
personnel remain an open question. This paper presents a case&#13;
study of an Airman’s interaction with and trust calibration of&#13;
LLMs over three months, both as an everyday assistant and&#13;
for development of ROMAD-AI, a tactical military application.&#13;
Through intuitive, AI-generated software development, an approach&#13;
relying on iterative code generation through natural&#13;
language prompting of LLMs from a technical novice rather&#13;
than human generated programming from a technical expert,&#13;
the research reveals significant gaps between industry curated&#13;
AI capability demonstrations and operational reality, requiring&#13;
systematic trust calibration and realistic scope management.&#13;
Outcomes are analyzed through operational and technical expertise&#13;
perspectives to provide practical guidance for both military&#13;
service members seeking effective AI integration and researchers&#13;
developing military-focused AI systems.
</summary>
<dc:date>2026-02-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Large Language Models and Defense Strategy: Escalation Risks and National Security Challenges</title>
<link href="https://hdl.handle.net/1721.1/164897" rel="alternate"/>
<author>
<name>Hou, Jonathan</name>
</author>
<author>
<name>Lax, Edwin</name>
</author>
<id>https://hdl.handle.net/1721.1/164897</id>
<updated>2026-02-18T03:09:04Z</updated>
<published>2026-02-17T00:00:00Z</published>
<summary type="text">Large Language Models and Defense Strategy: Escalation Risks and National Security Challenges
Hou, Jonathan; Lax, Edwin
This literature review examines the strategic vulnerabilities&#13;
posed by Large Language Models (LLMs) in military&#13;
and national security contexts. It synthesizes recent research&#13;
on their propensity for escalatory reasoning, cultural misalignment,&#13;
semantic manipulation, and dual-use ambiguity. Findings&#13;
from conflict s imulations a nd c oalition p lanning m odels reveal&#13;
how LLMs may default to aggressive or biased outputs under&#13;
ambiguity. These tendencies threaten alliance cohesion, distort&#13;
decision-making, and undermine trust in AI-enabled operations.&#13;
The review concludes by advocating for safeguards such as culturally&#13;
calibrated training, rigorous output verification, a nd the&#13;
integration of human-AI intermediaries to prevent destabilizing&#13;
outcomes.
</summary>
<dc:date>2026-02-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Synchronization-Aware Diffusion Models for Intra-Family RF Signal Classification</title>
<link href="https://hdl.handle.net/1721.1/164896" rel="alternate"/>
<author>
<name>Hayden, Hunter</name>
</author>
<author>
<name>Botero, Joey</name>
</author>
<id>https://hdl.handle.net/1721.1/164896</id>
<updated>2026-02-18T03:09:02Z</updated>
<published>2026-02-17T00:00:00Z</published>
<summary type="text">Synchronization-Aware Diffusion Models for Intra-Family RF Signal Classification
Hayden, Hunter; Botero, Joey
Classification of radio frequency (RF) signals in the&#13;
presence of channel-induced synchronization errors remains a&#13;
critical challenge in spectrum awareness systems. Traditional&#13;
classification pipelines generally rely on fixed synchronization&#13;
algorithms or assume aligned signals, which limits robustness&#13;
under real world timing, phase, and frequency distortions.&#13;
We introduce SyncDiff, a novel encoder-only diffusion model&#13;
architecture that predicts synchronization parameters through&#13;
iterative denoising steps prior to classification. By replacing&#13;
conventional synchronization algorithms with a learned datadriven&#13;
correction mechanism, our approach enables adaptive&#13;
signal alignment based on current channel distortions in unsynchronized&#13;
input data. SyncDiff employs a UNet based encoder&#13;
to refine synchronization parameters across multiple inference&#13;
steps, dynamically reducing channel-induced alignment errors&#13;
while preserving the inherit modulation specific characteristics&#13;
that allow these signals to be discriminable. Evaluations of the&#13;
RadioML2018 RF standard benchmark data set [1] demonstrates&#13;
improved classification accuracy across varying SNRs, modulation&#13;
schemes and synchronization impairments. Our findings&#13;
highlight the potential of diffusion-based synchronization learning&#13;
to improve downstream RF classification without reliance on&#13;
expert-engineered synchronization routines.
</summary>
<dc:date>2026-02-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Three-Dimensional Full-Core BEAVRS Using OpenMOC with Transport Equivalence</title>
<link href="https://hdl.handle.net/1721.1/164895" rel="alternate"/>
<author>
<name>Giudicelli, G</name>
</author>
<author>
<name>Forget, B</name>
</author>
<author>
<name>Smith, K</name>
</author>
<id>https://hdl.handle.net/1721.1/164895</id>
<updated>2026-02-18T03:07:45Z</updated>
<published>2025-04-04T00:00:00Z</published>
<summary type="text">Three-Dimensional Full-Core BEAVRS Using OpenMOC with Transport Equivalence
Giudicelli, G; Forget, B; Smith, K
Using an optimized implementation of the three-dimensional (3D) method of characteristics for neutron transport, along with a novel equivalence method for transport calculations that was designed to correct self-shielding errors from neglecting the angular dependence of resonant group absorption, a 3D full-core light water reactor hybrid stochastic-deterministic eigenvalue calculation was achieved. This paper presents the optimizations developed and compares the transport solutions obtained. For the statepoint, run times near 10 000 CPU hours are achieved—improving on previous works by an order of magnitude—with near 1% error on pin fission to 238U capture ratios and a few dozen pcms on the eigenvalue.
</summary>
<dc:date>2025-04-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Considering a US-Supported Self-Defense Option for Taiwan</title>
<link href="https://hdl.handle.net/1721.1/164894" rel="alternate"/>
<author>
<name>Glaser, Charles L.</name>
</author>
<id>https://hdl.handle.net/1721.1/164894</id>
<updated>2026-02-18T03:07:50Z</updated>
<published>2025-01-02T00:00:00Z</published>
<summary type="text">Considering a US-Supported Self-Defense Option for Taiwan
Glaser, Charles L.
There is wide agreement that Taiwan is the most dangerous issue dividing the United States and China. China believes Taiwan is part of its homeland, views unification with Taiwan as a core interest, and is determined to gain full control of the island. China continues to prefer peaceful unification, but explicitly retains the option of using military forces to achieve unification and seeks to use the threat of military force to strengthen its negotiating hand. Current US policy includes an ambiguous commitment to defend Taiwan if attacked or severely coerced by China—it leaves open whether and how the United States would respond. In addition, the United States provides Taiwan with weapons to improve its ability to defend itself. The United States is pressing Taiwan to deploy smaller mobile weapons that would increase the survivability and lethality of its forces; these forces would support a “porcupine strategy” that makes Taiwan harder to invade and conquer and would, at a minimum, provide time for US forces to arrive to aid Taiwan’s defense.
</summary>
<dc:date>2025-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Needs, Wants . . . and Excuses: What Executives Can Learn from Zig Ziglar About Working with Universities</title>
<link href="https://hdl.handle.net/1721.1/164893" rel="alternate"/>
<author>
<name>Wright, Randall S.</name>
</author>
<id>https://hdl.handle.net/1721.1/164893</id>
<updated>2026-02-18T03:07:49Z</updated>
<published>2025-04-09T00:00:00Z</published>
<summary type="text">Needs, Wants . . . and Excuses: What Executives Can Learn from Zig Ziglar About Working with Universities
Wright, Randall S.
Zig Ziglar was a famous sales trainer, motivational speaker, and author on salesmanship. When he died on November 28, 2012, Kevin Kruse (Citation2024)—best-selling author of Emotional Intelligence: 52 Strategies, coach to Fortune 500 CEOs, Marine Corps generals, and Silicon Valley entrepreneurs—wrote this in Forbes: “Zig Ziglar died today at age 86. A World War II veteran, Zig Ziglar became the top salesperson in several organizations before striking out on his own as a motivational speaker and trainer. With a Southern charm and lessons grounded in Christianity, Ziglar wrote over two dozen books and amassed a following of millions who were encouraged by his lessons for success.”
</summary>
<dc:date>2025-04-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Computational studies of electric field effects in CO2 methanation on Ni metal surfaces</title>
<link href="https://hdl.handle.net/1721.1/164892" rel="alternate"/>
<author>
<name>Wakamatsu, Katsuhiro</name>
</author>
<author>
<name>Yasuda, Takaaki</name>
</author>
<author>
<name>Aratani, Masato</name>
</author>
<author>
<name>Ogura, Teppei</name>
</author>
<id>https://hdl.handle.net/1721.1/164892</id>
<updated>2026-02-18T03:07:48Z</updated>
<published>2024-03-14T00:00:00Z</published>
<summary type="text">Computational studies of electric field effects in CO2 methanation on Ni metal surfaces
Wakamatsu, Katsuhiro; Yasuda, Takaaki; Aratani, Masato; Ogura, Teppei
Non-Faradaic electrochemical modification of catalytic activity (NEMCA) with an electric field (EF) has attracted attention as one of the methods to improve catalyst performance. However, this activation mechanism is not still clear. In this study, we focused on the NEMCA mechanism in CO2 methanation on Ni metal catalyst with solid oxide electrolysis cell (SOEC) and calculated two possible effects of the NEMCA mechanism; direct EF applications and oxygen atom co-adsorptions, using the density functional theory calculations and detailed kinetic simulations. Compared with these effects in terms of kinetic energy changes in the rate-determining steps, it has been revealed that the spillover effect of lattice oxygen toward the catalyst surface is dominant in the NEMCA mechanism. Also, we have found that overall CO2 methanation is promoted in SOEC mode with oxygen atom co-adsorptions in both cases of Ni flat and step sites.
</summary>
<dc:date>2024-03-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Equilibrium configurations of line arrays with respect to the deviatoric mean drift forces</title>
<link href="https://hdl.handle.net/1721.1/164891" rel="alternate"/>
<author>
<name>Tokić, Grgur</name>
</author>
<author>
<name>Yue, Dick KP</name>
</author>
<id>https://hdl.handle.net/1721.1/164891</id>
<updated>2026-02-18T03:07:47Z</updated>
<published>2024-05-02T00:00:00Z</published>
<summary type="text">Equilibrium configurations of line arrays with respect to the deviatoric mean drift forces
Tokić, Grgur; Yue, Dick KP
Monochromatic waves incident on an array of structures give rise to nonlinear, time-constant mean drift forces (MDFs). These forces depend on the array's spatial configuration; their magnitude and the direction is, in general, different for every structure in the array. If the spatial configuration of an array is not fixed, as is the case in arrays of individually anchor-moored structures, the time-constant differences in MDF on individual bodies can lead to a change in spatial configuration, which could, in turn, significantly affect both the first-order, time-harmonic response of the array, as well as the downwave component of the MDF. Here, we explore the dependency of these deviatoric forces on array configurations and on the frequency of the incident monochromatic waves. We consider configurations of line arrays (consisting of 2–5 vertical circular cylinders) that are described by 1 or 2 parameters, and we focus on the along-array component of deviatoric forces. Using multiple scattering computational simulations, we identify the array configurations in which the deviatoric drift forces are zero, and we discuss the stability of these equilibrium configurations with respect to class-preserving configuration perturbations. Both stable and unstable equilibria exist, but the relative number of unstable equilibria grows as the number of degrees of freedom of the configuration perturbations increases. Interestingly, the stable configurations experience a generally lower downwave mean drift force on the entire array than the unstable ones. Overall, the variations in the deviatoric and the downwave MDFs between equilibria are significant (on the order of the isolated body MDF).
</summary>
<dc:date>2024-05-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>1000-MW CSP with 100-gigawatt-hour crushed-rock heat storage to replace dispatchable fossil-fuel electricity</title>
<link href="https://hdl.handle.net/1721.1/164890" rel="alternate"/>
<author>
<name>Forsberg, Charles</name>
</author>
<id>https://hdl.handle.net/1721.1/164890</id>
<updated>2026-02-18T03:07:41Z</updated>
<published>2023-10-06T00:00:00Z</published>
<summary type="text">1000-MW CSP with 100-gigawatt-hour crushed-rock heat storage to replace dispatchable fossil-fuel electricity
Forsberg, Charles
We are developing 100-GWh heat-storage systems for use with 1000-MW Concentrated Solar Power (CSP) and nuclear reactor systems with capital cost goals of several dollars per kWh of heat storage—a factor of 50 under lithium ion batteries per unit of electricity. The capabilities of a 100-GWh heat storage system are similar to the Tennessee Valley Authority Raccoon Mountain pumped hydro facility that can provide 1652 MW(e) for 22 hours to address daily to weekly storage. The low capital cost of the Crushed Rock Ultra-large Stored Heat (CRUSH) system is only possible in large-capacity systems; thus, the CSP system average 24/7 heat inputs may exceed 1000 MW to match the heat storage capacity. Hot oil or nitrate salt is pumped from multiple solar farms or towers to the central CRUSH system and associated power block. The peak power block output may be 2 to 4 times average output with large economics of scale relative to the smaller power blocks associated with existing CSP systems. The cost savings from the large storage and the power block exceed the cost of hot oil or hot nitrate salt insulated pipelines over 10+ kilometers. The heat is stored in crushed rock in piles 20 m high and up to 250 m by 250 m on a side within an insulated floor and building structure. The sides of the rock pile are sloped rock that allow rock expansion and contraction with temperature without generating mechanical forces against walls. Heat is transferred from CSP to the crushed rock and then to the power cycle using (1) heat transfer oils for lower-temperature power systems to 400°C or (2) nitrate salts for higher-temperature power systems to 600°C. In charging mode, hot heat transfer fluid is sprayed over crushed rock and drains through the rock to the collection pans at the bottom to be reheated. Sections of rock are heated sequentially. In discharge mode cold heat transfer fluid is sprayed over crushed rock and drains through the rock to the collection pans below to deliver hot fluid to the power cycle. Heat storage costs are minimized by three features. Crushed rock is the lowest-cost storage material. The large building size minimizes the surface-to-volume ratio and thus building, insulation and foundation costs. The inventory and thus cost of oil and nitrate salt is minimized by using these fluids to transfer heat from CSP collectors to storage and then to the power block—but not for heat storage.
</summary>
<dc:date>2023-10-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>The way forward: The path to monolithic additive manufacture of lower hybrid current drive launchers</title>
<link href="https://hdl.handle.net/1721.1/164889" rel="alternate"/>
<author>
<name>Seltzman, AH</name>
</author>
<author>
<name>Wukitch, SJ</name>
</author>
<id>https://hdl.handle.net/1721.1/164889</id>
<updated>2026-02-18T03:07:38Z</updated>
<published>2023-08-18T00:00:00Z</published>
<summary type="text">The way forward: The path to monolithic additive manufacture of lower hybrid current drive launchers
Seltzman, AH; Wukitch, SJ
Additive Manufacturing (AM) is a key enabling technology for the rapid production of complex radio-frequency (RF) structures used in lower hybrid current drive (LHCD) launchers. Glenn Research Copper 84 (GRCop-84), a Niobium Chromide (Cr2Nb) 8 at. % Cr, 4 at. % Nb precipitation hardened alloy, is suitable for AM with Laser Powder Bed Fusion (L-PBF), achieving 99.5% density, Ra=3-4 µm surface roughness, yield strength of 470 MPa and an ultimate tensile strength (UTS) of 710 MPa in as-printed condition. AM of a high field side (HFS) lower LHCD launcher from GRCop-84 alloy demonstrated several critical advancements in AM of RF launchers. Waveguides with a pentagonal cross-section were designed to support the top internal waveguide surface with 45-degree chamfers from the sidewall, eliminating collapse of the ceiling, while maintaining RF properties near identical to a rectangular cross section. Hot Isostatic Pressing (HIPing) consolidated residual voids within the material, increasing density from 99.5% to 100%. Chemical-Mechanical Polishing (CMP) reduced residual surface roughness from the L-PBF process to Ra=0.1 µm / Rq=0.4 µm to lower RF losses. Advancements in L-PBF for the AM of copper alloys have increased the maximum build volume from 250x250x300mm on the Concept Laser M2 printer to 400x400x400mm on the EOS M400 printer. This increased build volume now enables monolithic AM of complete LHCD launchers with integrated cooling channels that eliminate the time-consuming laser welding assembly of launcher segments previously required by the smaller build volume.
</summary>
<dc:date>2023-08-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Particle-in-cell simulations of parasitic electrostatic wave excitation in the ion cyclotron range of frequencies and high harmonic fast wave regimes</title>
<link href="https://hdl.handle.net/1721.1/164888" rel="alternate"/>
<author>
<name>Diab, Raymond</name>
</author>
<author>
<name>Baek, Seung-Gyou</name>
</author>
<author>
<name>Bonoli, Paul</name>
</author>
<author>
<name>Jenkins, Thomas G</name>
</author>
<author>
<name>Ono, Masayuki</name>
</author>
<author>
<name>Smithe, David</name>
</author>
<id>https://hdl.handle.net/1721.1/164888</id>
<updated>2026-02-18T03:07:31Z</updated>
<published>2023-08-18T00:00:00Z</published>
<summary type="text">Particle-in-cell simulations of parasitic electrostatic wave excitation in the ion cyclotron range of frequencies and high harmonic fast wave regimes
Diab, Raymond; Baek, Seung-Gyou; Bonoli, Paul; Jenkins, Thomas G; Ono, Masayuki; Smithe, David
Using the open-source code SMILEI [J. Derouillat et al., Comput. Phys. Commun. 222, 351-373 (2018)], we perform one-dimensional full-f particle-in-cell (PIC) simulations of parasitic electrostatic wave excitation in the Ion Cyclotron Range of Frequencies (ICRF) and High Harmonic Fast Wave (HHFW) regimes in an inhomogeneous plasma. We first study direct coupling from the fast wave to electrostatic waves at the lower hybrid (LH) resonance (S=0). In the ICRF regime, we show that the fast wave can couple to the Ion Bernstein Wave (IBW), which propagates beyond the LH resonance layer. On the other hand, in the HHFW regime, no direct coupling to the IBW is observed, but electrostatic waves, likely to be Hot Ion Plasma Waves (HIPW or HPW), are seen on the low-density side of the LH resonance layer. The coupling efficiency to electrostatic waves is seen to increase with ion temperature. Parametric decay instabilities (PDIs) are then investigated in both regimes. In the ICRF regime, both resonant and non-resonant decay channels are observed and compared with theory. In the HHFW regime, we observe multiple sidebands separated by the ion cyclotron frequency, as measured experimentally on NSTX [J. R. Wilson et al., AIP Conf. Proc. 787, 66 (2005)]. The nature of these waves is discussed. Perpendicular ion heating is also found in the region where PDIs occur, consistent with experimental observations.
</summary>
<dc:date>2023-08-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Towards fast, accurate predictions of RF simulations via data-driven modeling: Forward and lateral models</title>
<link href="https://hdl.handle.net/1721.1/164887" rel="alternate"/>
<author>
<name>Wallace, GM</name>
</author>
<author>
<name>Bai, Z</name>
</author>
<author>
<name>Bertelli, N</name>
</author>
<author>
<name>Bethel, EW</name>
</author>
<author>
<name>Perciano, T</name>
</author>
<author>
<name>Shiraiwa, S</name>
</author>
<author>
<name>Wright, JC</name>
</author>
<id>https://hdl.handle.net/1721.1/164887</id>
<updated>2026-02-18T03:07:43Z</updated>
<published>2023-08-18T00:00:00Z</published>
<summary type="text">Towards fast, accurate predictions of RF simulations via data-driven modeling: Forward and lateral models
Wallace, GM; Bai, Z; Bertelli, N; Bethel, EW; Perciano, T; Shiraiwa, S; Wright, JC
Three machine learning techniques (multilayer perceptron, random forest, and Gaussian process) provide fast surrogate models for lower hybrid current drive (LHCD) simulations. A single GENRAY/CQL3D simulation without radial diffusion of fast electrons requires several minutes of wall-clock time to complete, which is acceptable for many purposes, but too slow for integrated modeling and real-time control applications. More accurate simulations with fast electron diffusion are even slower, requiring multiple hours of run time with parallel processing. The machine learning models use a database of 16,000+ GEN-RAY/CQL3D simulations for training, validation, and testing. Latin hypercube sampling methods implemented in πScope ensure that the database covers the range of 9 input parameters (ne0, Te0, Ip, Bt, R0, n∥︀, Ze f f, Vloop, PLHCD) with sufficient density in all regions of parameter space. The surrogate models reduce the computation time from minutes-hours to ms with high accuracy across the input parameter space. Data-driven surrogate models also allow for solving inverse and “lateral” problems. A surrogate model for the inverse problem maps from a desired current drive or power deposition profile to a set of input parameters that would result in such a profile, while a surrogate model for the lateral problem maps from a measured experimental quantity such as hard x-ray emission to a current drive or power deposition profile. The πScope database creation workflow is flexible and applicable to other RF simulation codes such as TORIC.
</summary>
<dc:date>2023-08-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Decrypting the mechanisms of wicking and evaporation heat transfer on micro-pillars during the pool boiling of water using high-resolution infrared thermometry</title>
<link href="https://hdl.handle.net/1721.1/164886" rel="alternate"/>
<author>
<name>Wang, Chi</name>
</author>
<author>
<name>Rahman, Md Mahamudur</name>
</author>
<author>
<name>Bucci, Matteo</name>
</author>
<id>https://hdl.handle.net/1721.1/164886</id>
<updated>2026-02-18T03:07:40Z</updated>
<published>2023-03-08T00:00:00Z</published>
<summary type="text">Decrypting the mechanisms of wicking and evaporation heat transfer on micro-pillars during the pool boiling of water using high-resolution infrared thermometry
Wang, Chi; Rahman, Md Mahamudur; Bucci, Matteo
Surfaces with micrometer-scale pillars have shown great potential in delaying the boiling crisis and enhancing the critical heat flux (CHF). However, physical mechanisms enabling this enhancement remain unclear. This knowledge gap is due to a lack of diagnostics that allow elucidating how micro-pillars affect thermal transport phenomena on the engineered surface. In this study, for the first time, we are able to measure time-dependent temperature and heat flux distributions on a boiling surface with engineered micro-pillars using infrared thermometry. Using these data, we reveal the presence of an intra-pillar liquid layer, created by the nucleation of bubbles and partially refilled by capillary effects. However, contrarily to conventional wisdom, the energy removed by the evaporation of this liquid cannot explain the observed CHF enhancement. Yet, predicting its dry out is the key to delaying the boiling crisis. We achieve this goal using simple analytic models and demonstrate that this process is driven by conduction effects in the boiling substrates and, importantly, in the intra-pillar liquid layer itself. Importantly, these effects also control the wicking flow rate and its penetration length. The boiling crisis occurs when, by coalescing, the size of the intra-pillar liquid layer becomes too large for the wicking flow to reach its innermost region. Our study reveals and quantifies unidentified physical aspects, key to the performance optimization of boiling surfaces for cooling applications.
</summary>
<dc:date>2023-03-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>APP2 Status Summary: Proposed New VLBI Capabilities for Cycle 8</title>
<link href="https://hdl.handle.net/1721.1/164885" rel="alternate"/>
<author>
<name>Matthews, Lynn D.</name>
</author>
<author>
<name>Crew, Geoffrey B.</name>
</author>
<id>https://hdl.handle.net/1721.1/164885</id>
<updated>2026-03-19T03:15:26Z</updated>
<published>2019-11-21T00:00:00Z</published>
<summary type="text">APP2 Status Summary: Proposed New VLBI Capabilities for Cycle 8
Matthews, Lynn D.; Crew, Geoffrey B.
This document contains material regarding the new capabilities proposed for ALMA Cycle 8. These included a passive phasing mode (for weaker sources), an ALMA Band 3 pulsar observing mode, a prototype spectral line mode, also for Band 3, and minor improvements to the code for operational reasons. In the event, the first two were accepted for a Cycle 8 that was delayed by the COVID-19 pandemic. The spectral line capability was deferred until Cycle 9. In response to reviewer questions, a modified figure was prepared and presented as an addendum. Both documents are presented here as a single PDF.
This report was prepared for the formal acceptance of the software required for Cycle 8.&#13;
Notionally it is ALMA Technical Note #21, but not (yet) published as such.
</summary>
<dc:date>2019-11-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Final Report: Enabling New VLBI Science with the ALMA Phasing System - Phase 3 (APP3): An ALMA North America Development Project</title>
<link href="https://hdl.handle.net/1721.1/164884" rel="alternate"/>
<author>
<name>Matthews, Lynn D.</name>
</author>
<author>
<name>Crew, Geoffrey B.</name>
</author>
<id>https://hdl.handle.net/1721.1/164884</id>
<updated>2026-03-04T18:34:05Z</updated>
<published>2024-07-19T00:00:00Z</published>
<summary type="text">Final Report: Enabling New VLBI Science with the ALMA Phasing System - Phase 3 (APP3): An ALMA North America Development Project
Matthews, Lynn D.; Crew, Geoffrey B.
Executive Summary: This document provides a summary of activities undertaken as part of the ALMA North America Development Project “Enabling New VLBI Science with the ALMA Phasing System - Phase 3 (APP3)”, whose period of performance ex- tended from January 17, 2022 to July 16, 2024. The successful completion of this project has resulted in the introduction of flexible tuning for ALMA very long baseline interfer- ometry (VLBI) operations, a fully flexible spectral line VLBI observing mode, and the enabling of panchromatic VLBI, allowing ALMA in principle to operate as a phased array in any available receiver band. The project also carried out a series of activities aimed at maintaining and optimizing existing VLBI infrastructure and provided training to staff at the Joint ALMA Observatory (JAO) to enable a transition to autonomous VLBI observing. A video feature and accompanying news article were produced near the conclusion of this project to make the results accessible to a broader audience.
This report was prepared as a final report on the activities undertaken under the NA Development program mentioned in the abstract.
</summary>
<dc:date>2024-07-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Open Access Task Force - Implementation Team Progress Report</title>
<link href="https://hdl.handle.net/1721.1/164883" rel="alternate"/>
<author>
<name>Bebergal, Peter</name>
</author>
<author>
<name>Bourg, Chris</name>
</author>
<author>
<name>Dunn, Katharine H.</name>
</author>
<author>
<name>Nurnberger, Amy</name>
</author>
<author>
<name>Pierce, Marianna</name>
</author>
<author>
<name>Shirer, Karen</name>
</author>
<author>
<name>Weeramuni, Lindsey</name>
</author>
<author>
<name>Wilcoxson, Jaren D.</name>
</author>
<id>https://hdl.handle.net/1721.1/164883</id>
<updated>2026-02-14T03:08:05Z</updated>
<published>2020-11-09T00:00:00Z</published>
<summary type="text">Open Access Task Force - Implementation Team Progress Report
Bebergal, Peter; Bourg, Chris; Dunn, Katharine H.; Nurnberger, Amy; Pierce, Marianna; Shirer, Karen; Weeramuni, Lindsey; Wilcoxson, Jaren D.
This report outlines the progress to date of the Open Access Task Force Implementation Team (OATF-IT), first convened in December 2019 to prioritize, shepherd, and support the final recommendations (October 2019) of the MIT-wide Ad Hoc Task Force on Open Access to MIT’s Research (OATF). The OATF launched in 2017 to update and revise the Institute’s policies and practices around open publications, data, educational materials, and software.
</summary>
<dc:date>2020-11-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Recommendations of the MIT Ad Hoc Task Force on Open Access to MIT's Research</title>
<link href="https://hdl.handle.net/1721.1/164882" rel="alternate"/>
<author>
<name>Abelson, Harold</name>
</author>
<author>
<name>Bourg, Chris</name>
</author>
<author>
<name>Bebergal, Peter</name>
</author>
<author>
<name>Bond, Robert A.</name>
</author>
<author>
<name>Cheng, Herng Yi</name>
</author>
<author>
<name>Chuang, Isaac L.</name>
</author>
<author>
<name>Cummins, Christopher C</name>
</author>
<author>
<name>Fitzgerald, Deborah K</name>
</author>
<author>
<name>Jarzombek, Mark</name>
</author>
<author>
<name>Lindsay, Nick</name>
</author>
<author>
<name>Pollard, Tom Joseph</name>
</author>
<author>
<name>Reid, Jack</name>
</author>
<author>
<name>Shirer, Karen</name>
</author>
<author>
<name>Trout, Bernhardt L.</name>
</author>
<author>
<name>Vander Heiden, Matthew G.</name>
</author>
<author>
<name>von Hippel, Eric A</name>
</author>
<author>
<name>Wilcoxson, Jaren D.</name>
</author>
<id>https://hdl.handle.net/1721.1/164882</id>
<updated>2026-02-14T03:08:04Z</updated>
<published>2019-10-17T00:00:00Z</published>
<summary type="text">Recommendations of the MIT Ad Hoc Task Force on Open Access to MIT's Research
Abelson, Harold; Bourg, Chris; Bebergal, Peter; Bond, Robert A.; Cheng, Herng Yi; Chuang, Isaac L.; Cummins, Christopher C; Fitzgerald, Deborah K; Jarzombek, Mark; Lindsay, Nick; Pollard, Tom Joseph; Reid, Jack; Shirer, Karen; Trout, Bernhardt L.; Vander Heiden, Matthew G.; von Hippel, Eric A; Wilcoxson, Jaren D.
</summary>
<dc:date>2019-10-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Regulating Wait-Driven Requests in Queues</title>
<link href="https://hdl.handle.net/1721.1/164881" rel="alternate"/>
<author>
<name>Freund, Daniel</name>
</author>
<author>
<name>Hausman, David</name>
</author>
<author>
<name>Weng, Wentao</name>
</author>
<id>https://hdl.handle.net/1721.1/164881</id>
<updated>2026-04-14T03:20:27Z</updated>
<published>2025-07-02T00:00:00Z</published>
<summary type="text">Regulating Wait-Driven Requests in Queues
Freund, Daniel; Hausman, David; Weng, Wentao
The study of rational queueing has a long and distinguished history focused on individuals' preference to avoid waiting. Surprisingly, there are settings in which some potential arrivals (which we also refer to as requests) derive utility from waiting and disutility from service. Our primary example is the U.S. affirmative asylum process. In this context, applicants obtain a work permit while waiting for an asylum interview; hence, if the (expected) wait is long enough, then even an applicant who knows that their application will be denied and lead to deportation proceedings, may find it in their interest to apply and thus benefit from legally working during the wait. Similar dynamics could occur in other settings like content moderation in social networks.&#13;
The common thread of these examples is the potentially self-exciting queue: when wait times are long, many arrivals are incentivized to join, and wait times become even longer. However, the system designer usually wants to avoid a large backlog. Indeed, the US Citizenship and Immigration Services (USCIS) mostly schedules asylum interviews in a Last-In-First-Out (LIFO) manner with the explicit goal of dissuading applicants with non-meritorious cases trying to exploit the long backlog. Despite this interesting scheduling choice in practice, and the potential prevalence of similar settings in other applications, the existing literature on rational queueing lacks frameworks to study the impact of wait-driven requests.&#13;
Motivated by this gap in the literature, we formalize a dynamical system where in each round, a given scheduling policy and a realized request rate determine the wait time distribution in a fluid queueing system. Observing the expected benefit from waiting in one round, requests update their decisions, setting the request rate for the next round. Assuming a concave benefit function from waiting, alongside general conditions, we prove that, for minimizing the backlog, LIFO is most effective while First-In-First-Out (FIFO) is least effective among all work-conserving policies. Moreover, we show that the dynamical system exhibits metastability: for either FIFO or LIFO, the system converges to either a zero-wait or a congested equilibrium.&#13;
Although some asylum practitioners support the use of LIFO, critics often admonish the real-world use of LIFO for its failure to maintain FIFO's order fairness: earlier requests should get earlier service. Our results demonstrate this trade-off between LIFO and FIFO. But we also show limitations of hybrid policies, which probabilistically follow either LIFO or FIFO, in navigating the trade-off between LIFO's efficiency and FIFO's fairness. Our work formalizes the concept of order fairness in queueing systems with abandonment and demonstrates that hybrid policies can be Pareto-dominated by LIFO: they may have both longer backlog and worse order fairness. Finally, we use real-world data on the scheduling of affirmative asylum applications to evaluate the change in fairness over the past 20 years under different policies.
EC ’25, July 7–10, 2025, Stanford, CA, USA
</summary>
<dc:date>2025-07-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>DeepSeek Inside: Origins, Technology, and Impact</title>
<link href="https://hdl.handle.net/1721.1/164880" rel="alternate"/>
<author>
<name>Cusumano, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/164880</id>
<updated>2026-04-14T03:20:37Z</updated>
<published>2025-06-18T00:00:00Z</published>
<summary type="text">DeepSeek Inside: Origins, Technology, and Impact
Cusumano, Michael
The release of DeepSeek V3 and R1 in January 2025 caused steep declines in the stock prices of companies that provide generative artificial intelligence (GenAI) infrastructure technology and datacenter services. These two large language models (LLMs) came from a little-known Chinese startup with approximately 200 employees compared to at least 3,500 employees for industry-leader OpenAI. DeepSeek seemed to have developed this powerful technology much more cheaply than previously thought possible. If true, DeepSeek had the potential to disrupt the economics of the entire GenAI ecosystem and the dominance of U.S. companies ranging from OpenAI to Nvidia.
</summary>
<dc:date>2025-06-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Density-Dependent Graph Orientation and Coloring in Scalable MPC</title>
<link href="https://hdl.handle.net/1721.1/164879" rel="alternate"/>
<author>
<name>Ghaffari, Mohsen</name>
</author>
<author>
<name>Grunau, Christoph</name>
</author>
<id>https://hdl.handle.net/1721.1/164879</id>
<updated>2026-04-14T03:20:40Z</updated>
<published>2025-06-13T00:00:00Z</published>
<summary type="text">Density-Dependent Graph Orientation and Coloring in Scalable MPC
Ghaffari, Mohsen; Grunau, Christoph
This paper presents massively parallel computation (MPC) algorithms in the strongly sublinear memory regime (aka, scalable MPC) for orienting and coloring graphs as a function of its subgraph density. Our algorithms run in poly(log log n) rounds and compute an orientation of the edges with maximum outdegree O (α log log n) as well as a coloring of the vertices with O (α log log n) colors. Here, α denotes the density of the densest subgraph. Our algorithm's round complexity is notable because it breaks the [EQUATION] barrier, which applied to the previously best known density-dependent orientation algorithm [Ghaffari, Lattanzi, and Mitrovic ICML'19] and is common to many other scalable MPC algorithms.
PODC ’25, Huatulco, Mexico
</summary>
<dc:date>2025-06-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Privacy-Preserving Mechanisms for Coordinating Airspace Usage in Advanced Air Mobility</title>
<link href="https://hdl.handle.net/1721.1/164878" rel="alternate"/>
<author>
<name>Maheshwari, Chinmay</name>
</author>
<author>
<name>Mendoza, Maria</name>
</author>
<author>
<name>Tuck, Victoria</name>
</author>
<author>
<name>Su, Pan-Yang</name>
</author>
<author>
<name>Qin, Victor</name>
</author>
<author>
<name>Seshia, Sanjit</name>
</author>
<author>
<name>Balakrishnan, Hamsa</name>
</author>
<author>
<name>Sastry, Shankar</name>
</author>
<id>https://hdl.handle.net/1721.1/164878</id>
<updated>2026-04-14T03:20:23Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Privacy-Preserving Mechanisms for Coordinating Airspace Usage in Advanced Air Mobility
Maheshwari, Chinmay; Mendoza, Maria; Tuck, Victoria; Su, Pan-Yang; Qin, Victor; Seshia, Sanjit; Balakrishnan, Hamsa; Sastry, Shankar
Advanced Air Mobility (AAM) operations are expected to transform air transportation while challenging current air traffic management practices. By introducing a novel market-based mechanism, we address the problem of on-demand allocation of capacity-constrained airspace to AAM vehicles with heterogeneous and private valuations. We model airspace and air infrastructure as a collection of contiguous regions (or sectors) with constraints on the number of vehicles that simultaneously enter, stay, or exit each region. Vehicles request access to airspace with trajectories spanning multiple regions at different times. We use the graph structure of our airspace model to formulate the allocation problem as a path allocation problem on a time-extended graph. To ensure that the cost information of AAM vehicles remains private, we introduce a novel mechanism that allocates each vehicle a budget of "air-credits" (an artificial currency) and anonymously charges prices for traversing the edges of the time-extended graph. We seek to compute a competitive equilibrium that ensures that: (i) capacity constraints are satisfied, (ii) a strictly positive resource price implies that the sector capacity is fully utilized, and (iii) the allocation is integral and optimal for each AAM vehicle given current prices, without requiring access to individual vehicle utilities. However, a competitive equilibrium with integral allocations may not always exist. We provide sufficient conditions for the existence and computation of a fractional-competitive equilibrium, where allocations can be fractional. Building on these theoretical insights, we propose a distributed, iterative, two-step algorithm that: 1) computes a fractional competitive equilibrium,  and 2) derives an integral allocation from this equilibrium. We validate the effectiveness of our approach in allocating trajectories for the emerging urban air mobility service of drone delivery.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Meschers: Geometry Processing of Impossible Objects</title>
<link href="https://hdl.handle.net/1721.1/164877" rel="alternate"/>
<author>
<name>Dodik, Ana</name>
</author>
<author>
<name>Yu, Isabella</name>
</author>
<author>
<name>Chandra, Kartik</name>
</author>
<author>
<name>Ragan-Kelley, Jonathan</name>
</author>
<author>
<name>Tenenbaum, Joshua</name>
</author>
<author>
<name>Sitzmann, Vincent</name>
</author>
<author>
<name>Solomon, Justin</name>
</author>
<id>https://hdl.handle.net/1721.1/164877</id>
<updated>2026-04-14T03:20:38Z</updated>
<published>2025-07-27T00:00:00Z</published>
<summary type="text">Meschers: Geometry Processing of Impossible Objects
Dodik, Ana; Yu, Isabella; Chandra, Kartik; Ragan-Kelley, Jonathan; Tenenbaum, Joshua; Sitzmann, Vincent; Solomon, Justin
Impossible objects, geometric constructions that humans can perceive but that cannot exist in real life, have been a topic of intrigue in visual arts, perception, and graphics, yet no satisfying computer representation of such objects exists. Previous work embeds impossible objects in 3D, cutting them or twisting/bending them in the depth axis. Cutting an impossible object changes its local geometry at the cut, which can hamper downstream graphics applications, such as smoothing, while bending makes it difficult to relight the object. Both of these can invalidate geometry operations, such as distance computation. As an alternative, we introduce Meschers, meshes capable of representing impossible constructions akin to those found in M.C. Escher's woodcuts.  Our representation has a theoretical foundation in discrete exterior calculus and supports the use-cases above, as we demonstrate in a number of example applications. Moreover, because we can do discrete geometry processing on our representation, we can inverse-render impossible objects. We also compare our representation to cut and bend representations of impossible objects.
</summary>
<dc:date>2025-07-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Learning-Augmented Competitive Algorithms for Spatiotemporal Online Allocation with Deadline Constraints</title>
<link href="https://hdl.handle.net/1721.1/164876" rel="alternate"/>
<author>
<name>Lechowicz, Adam</name>
</author>
<author>
<name>Christianson, Nicolas</name>
</author>
<author>
<name>Sun, Bo</name>
</author>
<author>
<name>Bashir, Noman</name>
</author>
<author>
<name>Hajiesmaili, Mohammad</name>
</author>
<author>
<name>Wierman, Adam</name>
</author>
<author>
<name>Shenoy, Prashant</name>
</author>
<id>https://hdl.handle.net/1721.1/164876</id>
<updated>2026-04-14T03:20:40Z</updated>
<published>2025-06-09T00:00:00Z</published>
<summary type="text">Learning-Augmented Competitive Algorithms for Spatiotemporal Online Allocation with Deadline Constraints
Lechowicz, Adam; Christianson, Nicolas; Sun, Bo; Bashir, Noman; Hajiesmaili, Mohammad; Wierman, Adam; Shenoy, Prashant
We introduce and study spatiotemporal online allocation with deadline constraints (SOAD), a new online problem motivated by emerging challenges in sustainability and energy. In SOAD, an online player completes a workload by allocating and scheduling it on the points of a metric space (X, d) while subject to a deadline T. At each time step, a service cost function is revealed that represents the cost of servicing the workload at each point, and the player must irrevocably decide the current allocation of work to points. Whenever the player moves this allocation, they incur a movement cost defined by the distance metric d(•, •) that captures, e.g., an overhead cost. SOAD formalizes the open problem of combining general metrics and deadline constraints in the online algorithms literature, unifying problems such as metrical task systems and online search. We propose a competitive algorithm for SOAD along with a matching lower bound establishing its optimality. Our main algorithm, ST-CLIP, is a learning-augmented algorithm that takes advantage of predictions (e.g., forecasts of relevant costs) and achieves an optimal consistency-robustness trade-off. We evaluate our proposed algorithms in a simulated case study of carbon-aware spatiotemporal workload management, an application in sustainable computing that schedules a delay-tolerant batch compute job on a distributed network of data centers. In these experiments, we show that ST-CLIP substantially improves on heuristic baseline methods.
SIGMETRICS Abstracts ’25, Stony Brook, NY, USA
</summary>
<dc:date>2025-06-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Faraday Cage Estimation of Normals for Point Clouds and Ribbon Sketches</title>
<link href="https://hdl.handle.net/1721.1/164875" rel="alternate"/>
<author>
<name>Scrivener, Daniel</name>
</author>
<author>
<name>Cui, Daniel</name>
</author>
<author>
<name>Coldren, Ellis</name>
</author>
<author>
<name>Abulnaga, Mazdak</name>
</author>
<author>
<name>Bessmeltsev, Mikhail</name>
</author>
<author>
<name>Chien, Edward</name>
</author>
<id>https://hdl.handle.net/1721.1/164875</id>
<updated>2026-04-14T03:20:47Z</updated>
<published>2025-07-25T00:00:00Z</published>
<summary type="text">Faraday Cage Estimation of Normals for Point Clouds and Ribbon Sketches
Scrivener, Daniel; Cui, Daniel; Coldren, Ellis; Abulnaga, Mazdak; Bessmeltsev, Mikhail; Chien, Edward
We propose a novel method (FaCE) for normal estimation of unoriented point clouds and VR ribbon sketches that leverages a modeling of the Faraday cage effect. Input points, or a sampling of the ribbons, form a conductive cage and shield the interior from external fields. The gradient of the maximum field strength over external field scenarios is used to estimate a normal at each input point or ribbon. The electrostatic effect is modeled with a simple Poisson system, accommodating intuitive user-driven sculpting via the specification of point charges and Faraday cage points. On inputs sampled from clean, watertight meshes, our method achieves comparable normal quality to existing methods tailored for this scenario. On inputs containing interior structures and artifacts, our method produces superior surfacing output when combined with Poisson Surface Reconstruction. In the case of ribbon sketches, our method accommodates sparser ribbon input while maintaining an accurate geometry, allowing for greater flexibility in the artistic process. We demonstrate superior performance to an existing approach for surfacing ribbon sketches in this sparse setting.
</summary>
<dc:date>2025-07-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Draft Recommendations of the MIT Ad Hoc Faculty Task Force on Open Access to MIT's Research</title>
<link href="https://hdl.handle.net/1721.1/164874" rel="alternate"/>
<author>
<name>Abelson, Harold</name>
</author>
<author>
<name>Bourg, Chris</name>
</author>
<author>
<name>Bebergal, Peter</name>
</author>
<author>
<name>Bond, Robert A.</name>
</author>
<author>
<name>Cheng, Herng Yi</name>
</author>
<author>
<name>Chuang, Isaac L.</name>
</author>
<author>
<name>Cummins, Christopher C</name>
</author>
<author>
<name>Fitzgerald, Deborah K</name>
</author>
<author>
<name>Jarzombek, Mark</name>
</author>
<author>
<name>Lindsay, Nick</name>
</author>
<author>
<name>Pollard, Tom Joseph</name>
</author>
<author>
<name>Reid, Jack</name>
</author>
<author>
<name>Shirer, Karen</name>
</author>
<author>
<name>Trout, Bernhardt L.</name>
</author>
<author>
<name>Vander Heiden, Matthew G.</name>
</author>
<author>
<name>von Hippel, Eric A</name>
</author>
<author>
<name>Wilcoxson, Jaren D.</name>
</author>
<author>
<name>Finnie, Ellen</name>
</author>
<author>
<name>Dunn, Katharine H.</name>
</author>
<id>https://hdl.handle.net/1721.1/164874</id>
<updated>2026-02-14T03:08:03Z</updated>
<published>2019-03-16T00:00:00Z</published>
<summary type="text">Draft Recommendations of the MIT Ad Hoc Faculty Task Force on Open Access to MIT's Research
Abelson, Harold; Bourg, Chris; Bebergal, Peter; Bond, Robert A.; Cheng, Herng Yi; Chuang, Isaac L.; Cummins, Christopher C; Fitzgerald, Deborah K; Jarzombek, Mark; Lindsay, Nick; Pollard, Tom Joseph; Reid, Jack; Shirer, Karen; Trout, Bernhardt L.; Vander Heiden, Matthew G.; von Hippel, Eric A; Wilcoxson, Jaren D.; Finnie, Ellen; Dunn, Katharine H.
</summary>
<dc:date>2019-03-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Networking Systems for Video Anomaly Detection: A Tutorial and Survey</title>
<link href="https://hdl.handle.net/1721.1/164873" rel="alternate"/>
<author>
<name>Liu, Jing</name>
</author>
<author>
<name>Liu, Yang</name>
</author>
<author>
<name>Lin, Jieyu</name>
</author>
<author>
<name>Li, Jielin</name>
</author>
<author>
<name>Cao, Liang</name>
</author>
<author>
<name>Sun, Peng</name>
</author>
<author>
<name>Hu, Bo</name>
</author>
<author>
<name>Song, Liang</name>
</author>
<author>
<name>Boukerche, Azzedine</name>
</author>
<author>
<name>Leung, Victor</name>
</author>
<id>https://hdl.handle.net/1721.1/164873</id>
<updated>2026-04-14T03:20:25Z</updated>
<published>2025-05-07T00:00:00Z</published>
<summary type="text">Networking Systems for Video Anomaly Detection: A Tutorial and Survey
Liu, Jing; Liu, Yang; Lin, Jieyu; Li, Jielin; Cao, Liang; Sun, Peng; Hu, Bo; Song, Liang; Boukerche, Azzedine; Leung, Victor
The increasing utilization of surveillance cameras in smart cities, coupled with the surge of online video applications, has heightened concerns regarding public security and privacy protection, which propelled automated Video Anomaly Detection (VAD) into a fundamental research task within the Artificial Intelligence (AI) community. With the advancements in deep learning and edge computing, VAD has made significant progress and advances synergized with emerging applications in smart cities and video internet, which has moved beyond the conventional research scope of algorithm engineering to deployable Networking Systems for VAD (NSVAD), a practical hotspot for intersection exploration in the AI, IoVT, and computing fields. In this article, we delineate the foundational assumptions, learning frameworks, and applicable scenarios of various deep learning-driven VAD routes, offering an exhaustive tutorial for novices in NSVAD. In addition, this article elucidates core concepts by reviewing recent advances and typical solutions and aggregating available research resources accessible at https://github.com/fdjingliu/NSVAD. Lastly, this article projects future development trends and discusses how the integration of AI and computing technologies can address existing research challenges and promote open opportunities, serving as an insightful guide for prospective researchers and engineers.
</summary>
<dc:date>2025-05-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analysis and Performance Evaluation of Blockchain Consensus Mechanisms for  Network Sharing</title>
<link href="https://hdl.handle.net/1721.1/164872" rel="alternate"/>
<author>
<name>Zeydan, Engin</name>
</author>
<author>
<name>MANGUES-BAFALLUY, JOSEP</name>
</author>
<author>
<name>Arslan, Suayb</name>
</author>
<author>
<name>Turk, Yekta</name>
</author>
<author>
<name>Antevski, Kiril</name>
</author>
<id>https://hdl.handle.net/1721.1/164872</id>
<updated>2026-04-14T03:20:35Z</updated>
<published>2026-01-27T00:00:00Z</published>
<summary type="text">Analysis and Performance Evaluation of Blockchain Consensus Mechanisms for  Network Sharing
Zeydan, Engin; MANGUES-BAFALLUY, JOSEP; Arslan, Suayb; Turk, Yekta; Antevski, Kiril
The growing demand for mobile data services has made it necessary to find efficient and cost-effective ways to share networks. Blockchain technology is a promising solution to the challenges of network sharing, such as interoperability, trust, and accountability. This paper presents a comprehensive classification and categorization of blockchain-based network sharing scenarios, highlighting their advantages and limitations. Seven network sharing scenarios are identified, ranging from centralized network sharing to fully decentralized spectrum sharing. The suitability of some selected blockchain consensus algorithms (namely Proof-of-Work (PoW) with Ethereum, Proof-of-Authority (PoA) with Ethereum, Practical Byzantine Fault Tolerance (PBFT) with Tendermint and Proof-of-Stake (PoS) with Cosmo) is assessed for selected scenarios through extensive evaluations. This paper also identifies gaps and opportunities in blockchain-based network sharing solutions, and presents future research directions.
</summary>
<dc:date>2026-01-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>MapTune: Versatile ASIC Technology Mapping via Reinforcement Learning Guided Library Tuning</title>
<link href="https://hdl.handle.net/1721.1/164871" rel="alternate"/>
<author>
<name>Liu, Mingju</name>
</author>
<author>
<name>Robinson, Daniel</name>
</author>
<author>
<name>Li, Yingjie</name>
</author>
<author>
<name>Maximilian Kuehn, Johannes</name>
</author>
<author>
<name>Liang, Rongjian</name>
</author>
<author>
<name>Ren, Haoxing</name>
</author>
<author>
<name>Yu, Cunxi</name>
</author>
<id>https://hdl.handle.net/1721.1/164871</id>
<updated>2026-04-14T03:20:28Z</updated>
<published>2025-07-11T00:00:00Z</published>
<summary type="text">MapTune: Versatile ASIC Technology Mapping via Reinforcement Learning Guided Library Tuning
Liu, Mingju; Robinson, Daniel; Li, Yingjie; Maximilian Kuehn, Johannes; Liang, Rongjian; Ren, Haoxing; Yu, Cunxi
Technology mapping involves mapping logical circuits to a library of cells. Traditionally, the full technology library is used, leading to a large search space and potential overhead. Motivated by randomly sampled technology mapping case studies, we propose a MapTune framework that addresses this challenge by utilizing reinforcement learning to make design-specific choices during cell selection. By learning from the environment, MapTune refines the cell selection process, resulting in a reduced search space and potentially improved mapping quality. The effectiveness of MapTune is evaluated on a wide range of benchmarks, different technology libraries, and various technology mappers. The experimental results demonstrate that MapTune achieves higher mapping accuracy and reduces delay/area across diverse circuit designs, technology libraries, and mappers. The paper also discusses the Pareto-Optimal exploration and confirms the perpetual delay-area trade-off. Conducted on benchmark suites ISCAS 85/89, ITC/ISCAS 99, VTR8.0, and EPFL benchmarks, the post-technology mapping and post-sizing quality-of-results (QoR) have been significantly improved, with average Area-Delay Product (ADP) improvement of 16.56\% among all different exploration settings in MapTune. The improvements consistently remained for four different technologies (7nm, 45nm, 130nm, and 180 nm) with various mappers from both state-of-the-art open-source and commercial synthesis tools.
</summary>
<dc:date>2025-07-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Two-Stage Approach to Improve Poverty Mapping Spatial Resolution</title>
<link href="https://hdl.handle.net/1721.1/164870" rel="alternate"/>
<author>
<name>Salas, Joaquín</name>
</author>
<author>
<name>Zea-Ortiz, Marivel</name>
</author>
<author>
<name>Vera, Pablo</name>
</author>
<author>
<name>Wood, Danielle</name>
</author>
<id>https://hdl.handle.net/1721.1/164870</id>
<updated>2026-04-14T03:38:39Z</updated>
<published>2026-01-28T00:00:00Z</published>
<summary type="text">A Two-Stage Approach to Improve Poverty Mapping Spatial Resolution
Salas, Joaquín; Zea-Ortiz, Marivel; Vera, Pablo; Wood, Danielle
Global extreme poverty has fallen dramatically over the past two centuries, yet hundreds of millions remain impoverished, underscoring the need for scalable monitoring tools. In Mexico, poverty metrics are available only sporadically in terms of time and space (e.g., every 5 years at the municipal level), making it difficult for decision-makers to access reliable, up-to-date, and sufficiently detailed information, highlighting the need for higher-resolution, timely methods. To address this problem, we propose a two-stage approach that combines socioeconomic and Earth Observations-based data. Initially, a machine learning model maps census variables to official poverty indicators belonging to a multidimensional model, yielding fine-scale poverty estimates. A census-based model trained with eXtreme Gradient Boosting (XGBoost) achieved a determination coefficient (&#119877;2) of approximately 0.842, indicating strong agreement with official poverty figures and providing high-resolution proxies. Afterward, we use features based on remote observations to predict these poverty estimates at a 469 m grid scale. In this case, advanced foundation models outperformed other machine learning (ML) approaches, achieving an &#119877;2 of 0.683. While foundation models enable more accurate, fine-scale poverty mapping and could accelerate poverty assessments, their use comes at a heavy price in terms of carbon emissions.
</summary>
<dc:date>2026-01-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Effectiveness of a Participatory Voice Intervention on Psychological Well-Being Among Warehouse Workers: Results From the Fulfillment Center Intervention Study, United States, 2021‒2023</title>
<link href="https://hdl.handle.net/1721.1/164869" rel="alternate"/>
<author>
<name>Siebach, Kirsten F.</name>
</author>
<author>
<name>Diaz-Linhart, Yaminette</name>
</author>
<author>
<name>Kubzansky, Laura D.</name>
</author>
<author>
<name>Berkman, Lisa F.</name>
</author>
<author>
<name>Wang, Molin</name>
</author>
<author>
<name>Ge, Lin</name>
</author>
<author>
<name>Kowalski, Alexander M.</name>
</author>
<author>
<name>Rahmandad, Hazhir</name>
</author>
<author>
<name>Kelly, Erin L.</name>
</author>
<id>https://hdl.handle.net/1721.1/164869</id>
<updated>2026-04-14T03:38:43Z</updated>
<published>2026-01-15T00:00:00Z</published>
<summary type="text">Effectiveness of a Participatory Voice Intervention on Psychological Well-Being Among Warehouse Workers: Results From the Fulfillment Center Intervention Study, United States, 2021‒2023
Siebach, Kirsten F.; Diaz-Linhart, Yaminette; Kubzansky, Laura D.; Berkman, Lisa F.; Wang, Molin; Ge, Lin; Kowalski, Alexander M.; Rahmandad, Hazhir; Kelly, Erin L.
Objectives. To examine whether a novel workplace intervention designed to increase worker voice can&#13;
reduce psychological distress and improve emotional vitality at 6- and 12-months follow-up.&#13;
Methods. We conducted a cluster-randomized trial in 16 fulfillment centers throughout the United States&#13;
between 2021-2023. Data were collected at three time points; 2813 workers participated in at least one&#13;
survey. Treated fulfillment centers established a new, participatory committee called the Health and&#13;
Well-Being Committee (HaWC). We compared differences in psychological distress and emotional&#13;
vitality and explored differential treatment effects by gender.&#13;
Results. At baseline, moderate or severe psychological distress was 51%. Intervention sites had lower&#13;
average psychological distress at the 6-month follow-up compared to control sites, with no significant&#13;
differences at 12-month follow-up. Gender moderation analyses suggest the HaWC was particularly&#13;
effective in reducing psychological distress among men at 6-month follow-up.&#13;
Conclusions. Our findings suggest that opportunities for workers to share concerns to a committee of&#13;
their peers tasked with identifying solutions can support mental health. Our study contributes important&#13;
experimental evidence on workplace interventions that improve the well-being of low-wage U.S.&#13;
populations.
</summary>
<dc:date>2026-01-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>ML Prediction Models to Identify Novel Beyond Visual Range Tactics and Error Analysis for DARPA AIR Agents</title>
<link href="https://hdl.handle.net/1721.1/164868" rel="alternate"/>
<author>
<name>Li, William</name>
</author>
<author>
<name>Castor, Jeremy</name>
</author>
<id>https://hdl.handle.net/1721.1/164868</id>
<updated>2026-02-13T05:07:40Z</updated>
<published>2026-02-12T00:00:00Z</published>
<summary type="text">ML Prediction Models to Identify Novel Beyond Visual Range Tactics and Error Analysis for DARPA AIR Agents
Li, William; Castor, Jeremy
This paper investigates the utility of using machine&#13;
learning models to predict the outcome of simulated 2 vs. 2&#13;
Tactical Intercept engagements flown by autonomous agents in&#13;
support of the DARPA Artificial Intelligence Reinforcements&#13;
(AIR) program. We investigated the performance of four models:&#13;
Feed Forward Neural Network, Random Forest, Extreme&#13;
Gradient Boost, and Long Short Term Memory (LSTM). We&#13;
examined their ability to successfully predict the outcomes of&#13;
simulated engagements, tactical errors, and the execution of novel&#13;
game plans by autonomous agents. The models were trained on&#13;
53 features pertaining to the agents including distance between&#13;
aircraft, altitude, speed, missile availability, and other eventbased&#13;
features from simulated runs. The LSTM model had the&#13;
best performance towards the beginning of a run and was able to&#13;
predict the correct winner with 87.8% accuracy only one minute&#13;
into a run while the XGBoost model achieved the best overall&#13;
performance with a 91.7% classification accuracy and an R² of&#13;
0.712. The XGB model was also able to correctly predict the&#13;
winner of 84.7% of the runs after only seven minutes into the&#13;
simulated engagement. These results demonstrate the utility and&#13;
need for further investigation into other ML models potential&#13;
to identify unique attributes and predictive analysis of more&#13;
complex multi-agent scenarios that include additional criteria&#13;
such as varying rules of engagement, incorporating acceptable&#13;
levels of risk as well as other requirements fighter pilots must take&#13;
into account during offensive and defensive operations needed to&#13;
gain air superiority and support the objectives of the Joint Forces&#13;
Commander.
</summary>
<dc:date>2026-02-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Open Access at MIT and Beyond: A White Paper of the MIT Ad Hoc Task Force on Open Access to MIT's Research</title>
<link href="https://hdl.handle.net/1721.1/164867" rel="alternate"/>
<author>
<name>Dunn, Katharine H.</name>
</author>
<author>
<name>Abelson, Harold</name>
</author>
<author>
<name>Bourg, Chris</name>
</author>
<author>
<name>Finnie, Ellen</name>
</author>
<id>https://hdl.handle.net/1721.1/164867</id>
<updated>2026-02-13T04:26:28Z</updated>
<published>2018-01-01T00:00:00Z</published>
<summary type="text">Open Access at MIT and Beyond: A White Paper of the MIT Ad Hoc Task Force on Open Access to MIT's Research
Dunn, Katharine H.; Abelson, Harold; Bourg, Chris; Finnie, Ellen
</summary>
<dc:date>2018-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Enabling New Science with the ALMA Phasing System - Phase 2 (APP2):  An ALMA North America Development Project</title>
<link href="https://hdl.handle.net/1721.1/164864" rel="alternate"/>
<author>
<name>Matthews, L. D.</name>
</author>
<author>
<name>Crew, G. B.</name>
</author>
<id>https://hdl.handle.net/1721.1/164864</id>
<updated>2026-03-04T18:32:50Z</updated>
<published>2024-10-18T00:00:00Z</published>
<summary type="text">Enabling New Science with the ALMA Phasing System - Phase 2 (APP2):  An ALMA North America Development Project
Matthews, L. D.; Crew, G. B.
This document provides a summary of activities undertaken as part of the Cycle 5 ALMA North America Development Project “Enabling New Science with the ALMA Phasing System - Phase 2 (APP2)”, whose period of performance extended from January 1, 2018 to August 31, 2024. APP2 provided a series of enhancements to ALMA’s very long baseline interferometry (VLBI) and phased array capabilities, leading to the introduction of submillimeter (Band 7) phasing and VLBI capabilities, a passive phasing mode, a Phased Array (pulsar) observing mode, a prototype spectral line VLBI capability, an improved method of handling baseband delays, and a number of other minor system enhancements.
This report was prepared as a final report on the activities undertaken under the NA Development program mentioned in the abstract.
</summary>
<dc:date>2024-10-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mechanisms of Interaction Between Hydraulic and Natural Fractures in Shale Rocks</title>
<link href="https://hdl.handle.net/1721.1/164863" rel="alternate"/>
<author>
<name>Arzuaga García, Ignacio Martín</name>
</author>
<id>https://hdl.handle.net/1721.1/164863</id>
<updated>2026-02-13T03:10:59Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Mechanisms of Interaction Between Hydraulic and Natural Fractures in Shale Rocks
Arzuaga García, Ignacio Martín
Understanding the interaction between hydraulically induced fractures and pre-existing natural fractures in geologic formations is key for optimizing subsurface energy systems that rely on fluid injection into fractured rocks. These include Enhanced Geothermal Systems (EGS), CO₂ sequestration, hydrogen storage in depleted reservoirs, unconventional oil and gas development in shale formations, and nuclear waste disposal, among others. In all these applications, controlling fracture propagation and interaction is essential for ensuring operational efficiency, safety, and long-term integrity of the system. This thesis presents a comprehensive experimental and theoretical investigation of hydraulic fracture (HF) interactions with natural fractures (NFs), using Opalinus Clayshale as a representative anisotropic material.&#13;
&#13;
The experimental work involved a series of hydraulic fracturing tests on Opalinus Clayshale specimens under controlled quasi-true-triaxial stress conditions, comparing normal and dried states. Novel monitoring techniques, including high-resolution imaging, high-speed video, acoustic emissions (AE), and pressure tracking, were employed to capture the fracturing process in real-time. Three dominant interaction modes (Crossing, Arrest, and Opening) were systematically characterized and linked to key parameters, including stress ratio, fracture geometry, and injection rates. A critical stress ratio (σ₁/σ₃) of approximately 20 was identified as the threshold for achieving fracture crossing under our experimental conditions: cohesionless, “open” natural fractures, with a low viscosity injection fluid, in a toughness-dominated regime. In dried specimens, high flaw pressurization rates were necessary to overcome matrix fluid loss and achieve crossing.&#13;
&#13;
To complement and interpret the experimental results, existing theoretical models were reviewed and implemented. Furthermore, a simplified version of the OpenT model (Chuprakov et al., 2014) was developed and applied for Opalinus Clayshale, incorporating stress, energy, friction, and permeability effects. By integrating laboratory results with theoretical frameworks, this thesis offers an integral approach to predictive understanding of fracture propagation in naturally fractured rocks, stating that not only the characteristics of the discontinuity or the far-field stresses involved in the process are important in determining the mechanism of interaction, but also the dynamic energy balance at the fracture tip, which is influenced by injection rate, fluid viscosity, and discontinuity properties.&#13;
&#13;
Overall, this thesis bridges the gap between laboratory experiments and theoretical models, advancing a more comprehensive understanding of fracture propagation in naturally fractured media. The findings highlight the importance of considering both mechanical and hydraulic parameters, particularly in low-viscosity, toughness-dominated regimes, for accurately predicting fracture behavior.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Satellite Drag and Sustainable Space Operations in a Dynamic Thermosphere</title>
<link href="https://hdl.handle.net/1721.1/164862" rel="alternate"/>
<author>
<name>Parker, William E.</name>
</author>
<id>https://hdl.handle.net/1721.1/164862</id>
<updated>2026-02-13T03:11:02Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Satellite Drag and Sustainable Space Operations in a Dynamic Thermosphere
Parker, William E.
Earth’s orbit has become increasingly congested and contested in recent years. The surge in launched payloads, combined with satellite failures, explosions, and collisions, has contributed to a large and growing population of orbital debris objects that can remain in orbit for decades, centuries, or longer. Meanwhile, decreasing launch costs and maturing satellite technology have created conditions favorable for rapid commercialization across orbital regimes, especially in low Earth orbit (LEO). Today, a small number of commercial entities operate the large majority of the world’s active satellites as part of proliferated LEO constellations. Sustaining productive activity in an increasingly crowded orbital environment has made satellite conjunction assessment and collision avoidance essential for safe operations. These efforts require not just accurate trajectory predictions, but also credible estimates of uncertainty. In LEO, variability in atmospheric drag is by far the dominant source of propagation error, often leading to deviations of several kilometers per day due to unpredictable solar and geomagnetic activity. Even over short timescales, trajectory prediction is challenging because existing forecasts exhibit limited predictive skill. Although forecast errors are often non-Gaussian and heteroscedastic, operational products are generally presented as deterministic, and atmospheric models rarely provide rigorous uncertainty characterization. This work introduces a new approach for probabilistic satellite drag modeling based on historical correlations between space weather drivers and satellite dynamics. Unlike traditional methods, it models satellite behavior directly without reconstructing thermospheric mass density or requiring detailed knowledge of satellite properties such as the ballistic coefficient. This end-to-end strategy offers substantial computational and operational advantages for many space domain awareness tasks. Capturing both trajectory predictions and their associated uncertainty is critical for enabling informed collision avoidance decisions, particularly during geomagnetic storms when current infrastructure frequently fails. Because the orbital lifetime of debris objects can exceed hundreds of years, population dynamics in space critically depend on long-term variability in the composition of Earth’s thermosphere. Rising concentrations of carbon dioxide and other greenhouse gases have caused warming in the troposphere but cooling and contraction in the upper atmosphere. This contraction decreases atmospheric density in LEO, reducing drag and extending the orbital lifetime of debris objects. Longer-lived debris populations pose a persistent collision hazard for all active satellites as long as they remain in orbit. Even natural events, such as a prolonged grand solar minimum, could further reduce thermospheric density and contribute to longer debris lifetime in LEO. With little ability to predict such an event, it is necessary to understand the potential consequences and to identify strategies that enable the continued safe and productive use of LEO. This work models the impact of such long-term environmental changes on limits for sustainable satellite deployments. LEO is a finite respource increasingly at risk of overexploitation. Conserving it and sharing it fairly requires that we first understand its fundamental capacity and our current occupation of that capacity. Some metrics have been proposed to measure the satellite carrying capacity of Earth’s orbit, but none have previously accounted for the potential influence of a changing space climate. This work develops new methods for defining carrying capacity as a common currency, enabling clear constraint-driven thresholds on activity and a better understanding of how existing and proposed missions consume available capacity. These new metrics provide insight into how environmental variability may affect the long-term sustainability of operations in LEO. Respecting and understanding this influence that the natural environment has on our collective ability to operate spacecraft in LEO is critical to preventing the overexploitation of this regime and protecting it for future generations.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evaluating Large Language Models as Circuit Design Assistants</title>
<link href="https://hdl.handle.net/1721.1/164861" rel="alternate"/>
<author>
<name>Cox, Matthew J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164861</id>
<updated>2026-02-13T03:49:28Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">Evaluating Large Language Models as Circuit Design Assistants
Cox, Matthew J.
Large language models (LLMs) have exploded in capability in recent years. Previous attempts at AI systems for circuit design have had limited proficiency and been restricted in problem scope. LLMs, with their breadth of knowledge and reasoning ability, are a promising technology for a much more general-purpose circuit design assistant. We developed a dataset of electrical engineering problems and solutions with which to test an LLM-based system, since no such publicly available dataset exists to our knowledge; unmodified GPT-4 was able to solve 42% of the problems. We did a preliminary comparison of several knowledge bases to use for RAG knowledge injection, finding that a small, curated set of resources performed better than a larger, less-focused set of resources, though there were confounding factors which may have skewed the result. While this work is a start, significant future work is needed to continue developing an LLM-based circuit design assistant.
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Increasing Program Code Coverage Using Fuzzing and Targeted Branch Exploration</title>
<link href="https://hdl.handle.net/1721.1/164860" rel="alternate"/>
<author>
<name>Nguyen, Gary</name>
</author>
<id>https://hdl.handle.net/1721.1/164860</id>
<updated>2026-02-13T03:49:33Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Increasing Program Code Coverage Using Fuzzing and Targeted Branch Exploration
Nguyen, Gary
Code coverage is a longstanding metric for evaluating how thoroughly a program has been tested. Achieving high coverage remains a priority goal for quality assurance and software stability. Exhaustive enumeration of possible input paths to every code region is desirable in theory but computationally infeasible in practice, especially in large-scale codebases. Fuzzing is a widely used technique for input generation and is effective at exploring smaller programs but often struggles with more complex conditional logic and nested modules. Concolic execution, which exhaustively explores paths using constraint solving, can work effectively with complex conditional logic but suffers from path explosion. Targeted branch exploration is a similar approach for input generation but sidesteps the path explosion problem by focusing more on specific constraint paths of interest.&#13;
&#13;
In this thesis, I introduce a hybrid system that combines fuzzing and targeted branch exploration with the goal of improving code coverage by leveraging the complementary strengths of each. The system uses fuzzing to quickly generate a broad input corpus and follows up with targeted branch exploration to explore paths that fuzzing struggles to reach. Findings from experiments on two C projects of different complexities show that the system did not outperform the individual techniques in terms of raw coverage, revealing limitations of the approach and opportunities for future improvement.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Essays in Financial Economics and Econometrics</title>
<link href="https://hdl.handle.net/1721.1/164859" rel="alternate"/>
<author>
<name>Orestes, Victor M.</name>
</author>
<id>https://hdl.handle.net/1721.1/164859</id>
<updated>2026-02-13T03:10:50Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Essays in Financial Economics and Econometrics
Orestes, Victor M.
This thesis comprises three essays in finance and econometrics. The first two essays focus on the role of credit access and liquidity in shaping real firm outcomes. The first essay examines the transmission of modern monetary policy through corporate asset markets. Exploiting quasi-experimental variation in the Central Bank of Brazil’s collateral framework and implementing a novel dynamic regression discontinuity design, it shows that monetary policy can ease expected future borrowing constraints, reduce firms’ precautionary cash holdings, and stimulate employment. The second essay analyzes how receivables financing through factoring helps firms smooth cash flows. Using a shift-share instrument and matched administrative data, it finds that cheaper liquidity leads firms to rely more on permanent labor. The third essay develops a new method for distributional inference—nonparametric quantile mixture models. This framework can be applied to financial settings such as tail risk estimation and density forecasting, as well as to causal inference when the objective is to estimate the distributional effects of interventions. It is used here to quantify the heterogeneous wage effects of a major environmental disaster.&#13;
&#13;
The first chapter (joint with Luis Alvarez and Thiago Christiano Silva) studies how modern monetary policy tools, which increasingly operate through corporate asset markets, affect real firm outcomes. We exploit quasi-experimental variation from the inclusion of specific corporate debt instruments in the Central Bank of Brazil’s collateral framework and implement a novel dynamic regression discontinuity design. We find that eligibility increases firms’ debt issuance, modestly lowers spreads, and reduces cash holdings, reflecting a decline in precautionary savings. These effects translate into higher employment and greater supply chain liquidity. We interpret the mechanism through the lens of segmented financial markets: by relaxing firms’ expected future borrowing constraints, the policy acts as a persistent borrowing subsidy and liquidity injection. This encourages firms to reduce cash hoarding and expand production. Using a semi-structural framework calibrated to our reduced-form estimates, we find that an induced 0.8% borrowing subsidy leads to a 1% increase in debt issuance, a 0.2% reduction in cash holdings, and a 0.4% increase in the wage bill.&#13;
&#13;
The second chapter (joint with Thiago Christiano Silva and Henry Zhang) &#13;
shows that firms experience large increases in sales and purchases after receiving cheaper liquidity. We focus on factoring, defined as the supplier-initiated sale of receivables. In Brazil, receivables funds (FIDCs) securitize receivables for institutional investors. By assembling a novel transaction-level dataset of factoring with other credit operations for all registered firms and FIDCs, we construct a shift-share instrument for factoring financing supply based on FIDC flows. We then use a novel combination of electronic payments, trade credit, and employer-employee matched data to estimate the impacts. A flow-induced increase in receivables demand reduces firms’ factoring interest rate. In response, firms demand more permanent labor and less temporary labor. In our model, these effects arise from factoring’s purpose of reducing cash inflow volatility, helping firms match inflows to outflows, which firms otherwise achieve at an efficiency cost through substitution across labor types.&#13;
&#13;
The third chapter (joint with Luis Alvarez) introduces nonparametric quantile mixture models as a computationally convenient and flexible alternative to standard nonparametric density mixtures, which are widely used in Statistics and Econometrics but face significant computational and inferential challenges. We propose a sieve estimator based on a generalized method of L-moments and develop a full inferential theory. In doing so, we contribute to the statistical literature by extending a numerical bootstrap method to high-dimensional settings. As a direct application of our theory, we provide the first inference method for the distributional synthetic controls of Gunsilius (2023), a novel tool for counterfactual analysis that previously lacked formal inference procedures. We apply this method to evaluate the effects of the Brumadinho dam collapse—a large-scale environmental disaster—on the local wage distribution. The results reveal substantial heterogeneity across the distribution, with evidence of displacement effects in which median-paying jobs are replaced by lower-wage contracts.&#13;
JEL Codes: C1, E4, E5, G2, G3
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Machine-Learned Representations of Basis Sets and Their&#13;
Application in Quantum Computational Chemistry</title>
<link href="https://hdl.handle.net/1721.1/164858" rel="alternate"/>
<author>
<name>He, Wenhao</name>
</author>
<id>https://hdl.handle.net/1721.1/164858</id>
<updated>2026-02-13T03:49:30Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Machine-Learned Representations of Basis Sets and Their&#13;
Application in Quantum Computational Chemistry
He, Wenhao
Quantum simulations of electronic structure promise to deliver significant speedups over classical methods, but remain limited by the number of qubits on near-term devices. A key strategy to reduce quantum resource requirements is to truncate the molecular Hilbert space via compact and efficient basis sets. However, most optimized basis sets either rely on predefined heuristics or require expensive classical computations, such as CASSCF orbital optimization or ℓ1-norm minimization of the Hamiltonian. In this work, we introduce a general machine learning framework for fast basis set prediction in quantum computational chemistry. Our method employs an equivariant graph neural network that outputs a Hermitian matrix encoding optimized molecular orbitals. The eigenvectors of this matrix define a transferable and efficient basis set, trained on orbitals obtained via CASSCF and Hamiltonian ℓ1 norm optimization. We evaluate our model on hydrogen chains and demonstrate that the predicted bases achieve energy accuracy and Hamiltonian sparsity comparable to orbital-optimized methods, while reducing classical preprocessing time. In addition, the predicted orbitals can be directly used as high-quality initial guesses for CASSCF calculations, further accelerating their convergence.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Signaling at the Tumor-Immune Interface in Glioblastoma</title>
<link href="https://hdl.handle.net/1721.1/164857" rel="alternate"/>
<author>
<name>D'Souza, Alicia D.</name>
</author>
<id>https://hdl.handle.net/1721.1/164857</id>
<updated>2026-02-13T03:10:43Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Signaling at the Tumor-Immune Interface in Glioblastoma
D'Souza, Alicia D.
Glioblastoma (GBM) is a devastating brain cancer, and the standard of care has not changed in over 20 years. GBM tumors are composed of a milieu of cancer cells and innate immune cells, which are co-opted by the cancer cells to promote an anti-inflammatory environment. Despite tremendous success in immunotherapy in several cancers over the past 10 years, immunotherapies have failed to show efficacy in GBM. A systems biology approach to characterizing temporal changes in tumor-immune interface of glioblastoma could illuminate new strategies to activate an anti-tumor immune response by examining changes in cell signaling and antigen presentation.&#13;
&#13;
In the first part of my thesis, I investigated how macrophages alter their phenotype in response to tumor co-culture and how these changes are reflected at the level of the phosphoproteome. To characterize signaling changes in distinct cell populations during co-culture, I developed a method to preserve and analyze cell-type-specific signaling using fixation. This approach enables phosphoproteomic profiling of two interacting cell types, capturing dynamic signaling events with cell-type resolution. I applied this method to study co-cultures of glioblastoma (GBM) cells and primary human macrophages. When cultured together, GBM cells induced an anti-inflammatory, immunosuppressive phenotype in macrophages, mirroring features observed in the glioblastoma tumor microenvironment. Phosphoproteomic analysis revealed that this phenotypic shift was accompanied by distinct signaling alterations in macrophages, including the upregulation of ABL kinase activity. To test this finding, I treated macrophages with an ABL kinase inhibitor and observed a reduction in the anti-inflammatory phenotype, suggesting that ABL signaling plays a role in supporting immunosuppressive macrophage polarization. Furthermore, in a mouse model of GBM, treatment with an ABL kinase inhibitor led to a reduction in the abundance of anti-inflammatory macrophages within the tumor and was associated with a modest extension of survival.&#13;
&#13;
In the second part, I examined changes in antigen presentation and signaling in glioblastoma tumors in response to treatment with an oncolytic virus (OV). In patient derived tumor (PDX) models in mice, mice treated with OV have increased antigen presentation, pointing to the use of OV therapy to reshape the tumor micro-environment to a more inflammatory state. Finally, tissue obtained from serial biopsies of GBM patients treated with OV shows an increase in antigen presentation and both Class I and Class II MHC protein expression. We also observed an increase in interferon alpha and interferon gamma signaling pathways as well as early induction of apoptotic pathways. These findings highlight the role of therapeutics in altering the tumor microenvironment and potentially priming it for combination immunotherapies. This thesis explores the dynamic nature of the tumor and immune compartments in glioblastoma and underscores how therapies can act on the immune compartment to promote anti-tumor activity.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>SmellNet: A Large-scale Dataset for Real-world Smell&#13;
Recognition</title>
<link href="https://hdl.handle.net/1721.1/164856" rel="alternate"/>
<author>
<name>Feng, Dewei</name>
</author>
<id>https://hdl.handle.net/1721.1/164856</id>
<updated>2026-02-13T03:49:31Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">SmellNet: A Large-scale Dataset for Real-world Smell&#13;
Recognition
Feng, Dewei
The ability of AI to sense and identify various substances based on their smell alone can have profound impacts on allergen detection (e.g., smelling gluten or peanuts in a cake), monitoring the manufacturing process, and sensing hormones that indicate emotional states, stress levels, and diseases. Despite these broad impacts, there are virtually no large-scale benchmarks, and therefore little progress, for training and evaluating AI systems’ ability to smell in the real world. In this paper, we use portable gas and chemical sensors to create SmellNet, the first large-scale database that digitizes a diverse range of smells in the natural world. SmellNet contains about 180,000 time steps of 50 substances (spanning nuts, spices, herbs, fruits, and vegetables) with 50 hours of data. Using SmellNet, we trained AI models for real-time classification of substances based on their smell alone. Our best methods leverage sequence models, contrastive learning to integrate high-resolution Gas Chromatography–Mass Spectrometry molecular data, and a new temporal difference method that identifies sharp changes in sensor readings. Our best models achieve up to 65.35% accuracy on pre-recorded data, and generalize to real-world conditions with 10.71% accuracy on nuts and 25.38% on spices in the challenging 50-way online classification task. Despite these promising results, SmellNet highlights many technical challenges in building AI for smell, including richer feature learning, on-edge smell models, and robustness to environmental changes.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Towards Zero-Shot Pretrained Models for Efficient Black-Box Optimization</title>
<link href="https://hdl.handle.net/1721.1/164855" rel="alternate"/>
<author>
<name>Meindl, Jamison Chivvis</name>
</author>
<id>https://hdl.handle.net/1721.1/164855</id>
<updated>2026-02-13T03:49:16Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Towards Zero-Shot Pretrained Models for Efficient Black-Box Optimization
Meindl, Jamison Chivvis
Global optimization of expensive, derivative-free black-box functions requires extreme sample efficiency. While Bayesian optimization (BO) is the current state-of-the-art, its performance hinges on surrogate and acquisition function hyperparameters that are often hand-tuned and fail to generalize across problem landscapes. We present ZeroShotOpt, the first general-purpose, pretrained model for continuous black-box optimization tasks ranging from 2 D to 20 D. Our approach leverages offline reinforcement learning on large-scale optimization trajectories collected from 12 BO variants. To scale pretraining, we generate millions of synthetic Gaussian process-based functions with diverse landscapes, enabling the model to learn transferable optimization policies. As a result, ZeroShotOpt achieves robust zero-shot generalization on a wide array of unseen synthetic and real-world benchmarks, matching or surpassing the sample efficiency of leading global optimizers, including BO, while also offering a reusable foundation for future extensions.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Temperature Characterization of Colloidal Quantum Dot&#13;
Light Emitting Diodes</title>
<link href="https://hdl.handle.net/1721.1/164854" rel="alternate"/>
<author>
<name>Nguyen, Thienan D.</name>
</author>
<id>https://hdl.handle.net/1721.1/164854</id>
<updated>2026-02-13T03:49:26Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Temperature Characterization of Colloidal Quantum Dot&#13;
Light Emitting Diodes
Nguyen, Thienan D.
Colloidal quantum dot light emitting diodes reveal to be promising candidates for the next generation of display technologies. Their brighter emissions, greater color purity, and higher efficiency make them highly desirable in consumer electronics. As such, research into the performance and stability of these novel LEDs are crucial for their operation in displays. These investigations are ongoing, with focused efforts on improving the operating stability through different quantum dot materials and passivation methods. However, less attention is paid in confidently understanding the fundamental relationships between current, voltage, and luminance by which these devices operate. These electrical characteristics reveal insights into the operation of these devices and the behavior of charge carriers. Additionally, temperature-dependent electrical measurements can showcase different behavior at different temperatures and deviations from the expected performance at set temperatures. Temperature dependent processes are revealed and from such, a better understanding of how the device operates is gained. In this thesis, an investigation into the temperature-dependent electrical characteristics of quantum dot light emitting diodes was conducted by measuring the current-voltage-luminance, JVL, relationships at various cryogenic temperatures. These temperatures ranged from 78K, liquid nitrogen boiling point, to 293K, room temperature. This investigation revealed the temperature dependent nature and origin of turn-on voltage, current, EQE, EQE roll-off, and hysteresis.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Uncertainty-Aware Knowledge Graph Retrieval Methods and Their Use in LLM Question-Answering</title>
<link href="https://hdl.handle.net/1721.1/164853" rel="alternate"/>
<author>
<name>Rich, Benjamin R.</name>
</author>
<id>https://hdl.handle.net/1721.1/164853</id>
<updated>2026-02-13T03:49:13Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Uncertainty-Aware Knowledge Graph Retrieval Methods and Their Use in LLM Question-Answering
Rich, Benjamin R.
Knowledge Graph Question Answering (KGQA) encompasses a set of techniques aimed at generating accurate, interpretable responses to natural language queries posed over structured, graph-based datasets. Recent approaches to KGQA involve reducing the knowledge graph (KG) to a relevant subgraph, which is then encoded in natural language as a series of triples (subject, predicate, object) and passed to a large language model (LLM) for interpretation and answer generation. These methods have shown state-of-the-art accuracy. However, this paradigm is undermined by a critical vulnerability: the retrieval of irrelevant or erroneous facts can amplify LLM hallucinations and degrade system trustworthiness, while the reasoning process remains opaque. This thesis addresses this challenge by extending an existing stateof-the-art KGQA architecture with uncertainty-aware subgraph retrieval methods. To achieve this, we modify the retrieval component to learn the epistemic uncertainty of each candidate triple’s relevance to a given query. We implement these modifications using Bayesian methods and learn a well-calibrated approximation of the posterior distribution over triple relevance. By explicitly modeling this uncertainty, the retriever model is shown to provide a fine-grained confidence score for each piece of evidence. We expose these metrics downstream to the LLM during reasoning and evaluate whether LLMs can reason over uncertainty-related metrics to improve KGQA. We find that LLMs cannot reason effectively over uncertainties in most cases, but that agentic workflows that provide selective access to uncertainty metrics may enhance performance. We evaluate our approach against established benchmarks using HIT-rate and set-comparison accuracy metrics. Additionally, we introduce reasoning-path and statistical trust metrics derived from calibrated uncertainty scores. Our analysis reveals a significant positive correlation between path-based uncertainty metrics and the veracity of the Large Language Model’s (LLM) answers. These findings establish a robust foundation for developing uncertainty-grounded trust mechanisms in LLM-agnostic KGQA systems. As a proof of concept, a lightweight classifier trained exclusively on the LLM’s inputs and outputs demonstrates substantial predictive power in identifying correct responses. Finally, we briefly explore using uncertainty to identify out-of-distribution (OOD) queries.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Applied Compiler Optimizations for Proving Code</title>
<link href="https://hdl.handle.net/1721.1/164852" rel="alternate"/>
<author>
<name>Ruiz, Ricardo</name>
</author>
<id>https://hdl.handle.net/1721.1/164852</id>
<updated>2026-02-13T03:49:29Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Applied Compiler Optimizations for Proving Code
Ruiz, Ricardo
The recent popularity of massively distributed, trustless systems has created a demand for cryptographic proofs: systems to prove that a piece of data is a valid output for a given program. These systems exist, but face very high runtimes for the generation of proofs. Significant effort has been invested in optimizing the prover systems, but relatively less has been focused on optimizing the code that gets read as an input. This paper proposes a new approach to optimizing prover systems by modifying the compiler to produce proof-ready code. It proposes a benchmarking framework for comparing the relative proof costs of RISC-V instructions; the resulting analyis find that shift instructions do not offer heavy savings over multiplication. The finding suggests that strength reduction, a fundamental optimization in modern compilers, can sabotage end-to-end performance. The paper proposes methods for applying this knowledge to better optimize code, leaving the door open for future researchers to continue to make code proofs more performant and accessible.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reconstructing Cross-Species Ancestral Adeno-Associated&#13;
Viruses for Enhanced Gene Therapy Delivery</title>
<link href="https://hdl.handle.net/1721.1/164850" rel="alternate"/>
<author>
<name>Xie, Yuxin</name>
</author>
<id>https://hdl.handle.net/1721.1/164850</id>
<updated>2026-02-13T03:49:32Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Reconstructing Cross-Species Ancestral Adeno-Associated&#13;
Viruses for Enhanced Gene Therapy Delivery
Xie, Yuxin
Adeno-associated viruses (AAV) are one of the most promising vectors for gene therapy because of their established safety, low immunogenicity, and capability to achieve sustained gene expression. However, many naturally occurring AAV variants have limitations in their potency, particularly in penetrating biological barriers like the blood-brain barrier (BBB). Additionally, their broad and nonspecific tropism can translate into suboptimal cross-species transduction efficiency and potential toxicity, complicating the clinical transition from animal model to humans. These challenges impede the use of naturally occurring AAVs for therapeutic gene delivery in many neurological disorders-such as autism spectrum disorders (ASD), Parkinson’s disease (PD), Huntington’s disease (HD)—as well as other systemic conditions like cystic fibrosis (CF). To overcome these barriers, we developed a computational framework based on ancestral sequence reconstruction (ASR) to engineer synthetic ancestral AAV capsids with the goal of enhanced targeting specificity and potency. We first validated this computational framework by replicating the previously engineered Anc80L65 capsid. Then, with 75 naturally occurring functional AAV sequences and additional experimentally screened variants exhibiting brain-targeting potency, we built an evolutionary framework. We applied multiple computational methods such as enhanced multiple sequence alignment, maximum-likelihood-based phylogenetic tree inference, and ancestral sequence reconstruction with Bayesian inference. With this methodology, we predicted several novel ancestral AAV capsid sequences at critical evolutionary nodes, particularly those representing functional transitions with potential improved blood-brain barrier penetration and CNS tropism. Our computational framework thus streamlines and accelerates the process of designing ancestral AAV variants with targeted gene therapy applications.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Intercellular flow-mediated force relaxation measurement on the three-dimensional multicellular tissue</title>
<link href="https://hdl.handle.net/1721.1/164849" rel="alternate"/>
<author>
<name>Liu, Fan</name>
</author>
<id>https://hdl.handle.net/1721.1/164849</id>
<updated>2026-02-13T03:10:55Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Intercellular flow-mediated force relaxation measurement on the three-dimensional multicellular tissue
Liu, Fan
Three-dimensional (3D) multicellular tissues are prevailing over 2D monolayer or single cells; their mechanical properties like stiffness, surface tension, and viscosity have been shown to relate to diseases like fibrosis or tumor metastasis. Multicellular tissues have been traditionally modeled as a viscoelastic material due to their apparent shape rearrangement, which hardly considers the internal structure, including the extracellular matrix (ECM) and resulting intercellular water flow. These intercellular communications usually provide significant information on diseases such as tumor invasion, but immediate supporting evidence of this behavior is lacking. In this work, we investigate the bulk response of 3D multicellular tissues due to such intercellular flows and explore the related mechanism through a tailored micro-mechanics platform. &#13;
Firstly, we design and establish a micro-mechanics platform based on the parallel plate compression (PPC) method. We adopt a precise micro-balance as the sensor to detect the force variation of the sample during compression. A piezo linear stage is incorporated to exert such tiny vertical displacement. Besides, a lateral microscope is designed to monitor the compression process instantaneously. This platform has proved to be applicable to various samples, including hydrogels, cell spheroids, and natural tissues or organs. &#13;
Then, we propose the critical criterion, the size dependency of force relaxation time, to distinguish a material's properties, i.e., viscoelasticity and poroelasticity. For poroelastic material, the force relaxation is due to water redistribution; hence, the speed highly depends on the sample sizes. In contrast, for viscoelastic material, it is determined by the bulk material properties, thus independent of the size. We theoretically verify this criterion via Abaqus simulation and experimentally on classic poro-/visco-elastic materials with various dimensions. &#13;
Next, we apply the size-dependency criterion on the 3D multicellular tissues to distinguish the poro-/visco-elasticity in this biomaterial. We take the PPC on multiple cell spheroids with different sizes through the platform. It is observed that the force relaxation times are linearly proportional to the size of all tested cell lines, demonstrating poroelasticity in our experimental time range. Intriguingly, we take tests on the natural organs of the mouse islets and find such linear correlation as well. Hence, both cultured spheroids and natural tissues are poroelastic.&#13;
Finally, we explore the mechanism determining the poroelasticity inside the 3D multicellular tissues. By inhibiting the cell-cell junctions, we demonstrate the intercellular water flow through the extracellular gaps dominates this poroelastic force relaxation in the biomaterial. Further experiments show that the stiffness of the structure and the extracellular gaps inside the 3D multicellular tissues couple to contribute to the intercellular water flow, i.e., the stiffer the structure and/or the larger the gaps, the faster the water flows, thus quicker the force decays after compression.&#13;
These findings highlight the fundamental role of intercellular water flow in the mechanical properties of 3D multicellular tissues. The designed micro-mechanics platform is also beneficial to research at the tissue level with micro-newton forces owing to the development of artificial organoids for early disease diagnosis and treatment.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Generating Unprecedented Extreme Scenarios with Limited Data</title>
<link href="https://hdl.handle.net/1721.1/164848" rel="alternate"/>
<author>
<name>Chang, Kai</name>
</author>
<id>https://hdl.handle.net/1721.1/164848</id>
<updated>2026-02-13T03:49:19Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Generating Unprecedented Extreme Scenarios with Limited Data
Chang, Kai
Quantifying and predicting rare and extreme events persists as a crucial yet challenging task in understanding complex dynamical systems, ubiquitous in science and engineering. Many practical challenges arise from the infrequency and severity of these events, including the considerable variance of simple sampling methods and the substantial computational cost of high-fidelity numerical simulations. Numerous data-driven methods have recently been developed to tackle these challenges. However, a typical assumption for the success of these methods is the occurrence of multiple extreme events, either within the training dataset or during the sampling process. This leads to accurate models in regions of quiescent events but with high epistemic uncertainty in regions associated with extremes. To overcome this limitation, we introduce the framework of Extreme Event Aware (e2a or eta) or η-learning which does not assume the existence of extreme events in the available data. η-learning reduces the uncertainty even in ‘unchartered’ extreme event regions, by enforcing the extreme event statistics of a few observables during training, which can be available or assumed through qualitative arguments or other forms of analysis. This type of statistical regularization results in models that fit the observed data, but also enforces consistency with the prescribed statistics of some observables, enabling the generation of unprecedented extreme events even when the training data lack extremes therein. Theoretical results based on optimal transport offer a rigorous justification and highlight the optimality of the introduced method. Additionally, extensive numerical experiments illustrate the favorable properties of the ηlearning framework on several prototype problems and real-world precipitation downscaling problems.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A*-Decoding: Token-Efficient Inference Scaling</title>
<link href="https://hdl.handle.net/1721.1/164846" rel="alternate"/>
<author>
<name>Chatziveroglou, Ioannis</name>
</author>
<id>https://hdl.handle.net/1721.1/164846</id>
<updated>2026-02-13T03:49:18Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A*-Decoding: Token-Efficient Inference Scaling
Chatziveroglou, Ioannis
Inference-time scaling has emerged as a powerful alternative to parameter scaling for improving language model performance on complex reasoning tasks. While existing methods have shown strong performance gains under fixed compute budgets, there has been little focus on optimally utilizing that budget during inference. In this work, we introduce A*-decoding, a search-based inference-time strategy that builds on the A* search algorithm to optimally utilize a fixed compute budget by prioritizing high-quality reasoning paths during generation. We frame language model decoding as a structured search in a state space of partial solutions, applying the A* transition model to identify promising continuations guided by an external process supervision signal. In our experiments, A*-decoding reaches the performance levels of strong inference scaling baselines like best-of-N and particle filtering while using up to 3x fewer tokens and 30% fewer PRM passes under equivalent compute budgets. On the MATH500 and AIME 2024 benchmarks, A*-decoding enables Llama-3.2-1B-Instruct to match the performance of the 70x larger Llama-3.1-70B-Instruct, and allows Qwen3-1.7B to reach o1-like reasoning accuracy. These results highlight the power of structured search in decoding, offering an alternative to brute-force sampling or scale-driven gains. Our work demonstrates how thoughtful inference-time strategies can enhance reasoning in SLMs, pointing toward future advances in more efficient and scalable language model deployment.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>U-Net Network Enhancements to Facilitate Rapid Electron Microscopy Imaging for Connectomics</title>
<link href="https://hdl.handle.net/1721.1/164845" rel="alternate"/>
<author>
<name>Varma, Vikram</name>
</author>
<id>https://hdl.handle.net/1721.1/164845</id>
<updated>2026-02-13T03:49:27Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">U-Net Network Enhancements to Facilitate Rapid Electron Microscopy Imaging for Connectomics
Varma, Vikram
Imaging the structural and functional connections between cells in the brain allows neuroscientists to understand the brain by studying neuronal wiring diagrams. To automatically segment and classify images that are used in the construction of these neuronal wiring diagrams, or connectomes today, machine learning segmentation techniques require an image scanned with an electron microscope at either a slow dwell time or with small pixel sizes. However, a scalable and more rapid implementation of connectome construction has not yet been realized because of the significant cost of multi-beam electron microscopes and the relatively slow time in which connectomes can be constructed using a single-beam electron microscope. Segmented connectomes include sections that can be segmented properly with a fast scanned image as well as sections that require slow scanning for proper segmentation. Due to this fact, a potential way to enhance the time in which connectomes can be produced and segmented is to first scan samples at fast resolution and perform segmentation using a convolutional neural network, identify those areas of interest that require more detailed imaging through a learning-based error detection network, and then rescan only those identified high interest areas to produce a fused image for segmentation. The proposed thesis will analyze various machine learning methods for segmentation using the U-Net network and review proposed enhancements to the U-Net network that can better utilize electron microscopy images for construction of segmented connectomes. The successful use of fused electron microscopy images will potentially enable higher speed and lower cost electron microscopy imaging for connectomics.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Low-Temperature Germanium Waveguides for Mid-Infrared Sensing Applications</title>
<link href="https://hdl.handle.net/1721.1/164844" rel="alternate"/>
<author>
<name>Zhang, Erin Wei</name>
</author>
<id>https://hdl.handle.net/1721.1/164844</id>
<updated>2026-02-13T03:49:21Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Low-Temperature Germanium Waveguides for Mid-Infrared Sensing Applications
Zhang, Erin Wei
Waveguide integrated devices that operate in the mid-infrared (mid-IR) wavelength range (2.5-12 µm) are used for sensing the fundamental absorption bands in a variety of molecules. Germanium (Ge) is commonly used for photodetection in the nearinfrared (near-IR) wavelength range of 1.2-1.6 µm due to its strong absorption from a 0.8 eV direct band gap. At longer wavelengths in the mid-IR range, Ge exhibits transparency that makes it a desirable waveguide material for sensing applications. Its epitaxial growth compatibility with silicon (Si) substrates makes Ge-on-Si an effective platform for mid-IR waveguides. For back-end-of-line (BEOL) integration of waveguides in sensing applications, the thermal budget limits the temperature to below 450°C. In this work, we investigated the use of h-line exposure as a commercially viable, low-cost option for patterning low temperature (LT) Ge-on-Si waveguides using direct write lithography. Waveguide dimensions for optimal confinement in single-mode transverse electric (TE) polarization at wavelengths of 3 µm and 10.4- 11.3 µm were modeled and the direct lithography process was refined. Through dose testing and adjustments to the raster direction and pixel resolution, it was found that direct write lithography lacked the resolution required for low-loss waveguides. Scanning electron microscopy (SEM) revealed inconsistent waveguide widths and sidewall roughness, and e-beam lithography was identified as the preferred lithography process. For future integration of LT-Ge in a foundry process design kit (PDK), a universal thickness of 1.7 µm was found to support single-mode waveguide operation from 3-11.3 µm wavelength.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Assessing Log-Based Coordination Systems for Managed Cloud Environments</title>
<link href="https://hdl.handle.net/1721.1/164843" rel="alternate"/>
<author>
<name>Jimenez, Gabriel</name>
</author>
<id>https://hdl.handle.net/1721.1/164843</id>
<updated>2026-02-13T03:49:14Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Assessing Log-Based Coordination Systems for Managed Cloud Environments
Jimenez, Gabriel
The distributed systems landscape is undergoing a significant shift toward managed cloud environments, reducing the prevalence of self-hosted coordination services such as ZooKeeper. While ZooKeeper remains a proven and feature-rich solution for coordination tasks, its deployment in cloud environments can introduce component redundancy. This is because the underlying cloud platform already provides internal mechanisms to ensure coordination guarantees. This thesis investigates the design and evaluates the performance of a log-based coordination service library tailored for managed cloud environments. The proposed library removes the ensemble management overhead inherent in ZooKeeper by delegating durability and consistency responsibilities to the cloud provider’s data layer. This architectural simplification enables a modular design, allowing for tailored implementations that exploit the strengths and mitigate the limitations of a system's specified data layer. The library demonstrated feature parity with ZooKeeper for a targeted subset of coordination features, including leader election, membership tracking, and ephemeral state management. The same is noted for migration from an existing ZooKeeper-based application to this work's library, requiring minimal design changes while preserving coordination guarantees. While the results show that this design does not yet match mature coordination services in raw performance, they highlight potential avenues for further research, particularly in optimizing log-based coordination systems for the unique characteristics of cloud-managed data layers. Given the industry’s steady movement toward cloud-native infrastructure, these findings provide a foundation for future exploration into lightweight, platform-integrated coordination solutions.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Language Comprehension, Production, and Reasoning in&#13;
Humans and Neural Language Models</title>
<link href="https://hdl.handle.net/1721.1/164842" rel="alternate"/>
<author>
<name>Eisape, Tiwalayo</name>
</author>
<id>https://hdl.handle.net/1721.1/164842</id>
<updated>2026-02-13T03:10:48Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Language Comprehension, Production, and Reasoning in&#13;
Humans and Neural Language Models
Eisape, Tiwalayo
How closely do neural language models mirror human language processing, and what can this alignment teach us about cognition? This dissertation presents convergent evidence in comprehension, production, and reasoning that neural language models (LMs) can serve as productive instruments for understanding naturalistic human language use at scale. Studies 1-2 examine comprehension with complementary methods. First, Cloze Distillation—a novel method for aligning models with human next-word predictions—improves both language modeling and reading time prediction, demonstrating that LMs and humans make distinct, complementary predictions. Second, new methods for identifying syntactic information in LM hidden states demonstrate that models learn to implicitly represent incremental syntactic state. These probes also enable targeted interventions, allowing us to manipulate representations to resolve (or induce) temporary misinterpretations, confirming mechanistic understanding. While these studies demonstrate prediction’s role in comprehension, a complete account requires examining whether these mechanisms also shape how humans produce language in real-time. Study 3 analyzes a massive corpus of 2.3 million competitive typing events from TypeRacer.com, uncovering the first evidence of in-context predictability effects in this domain of production. Finally, Study 4 compares human and LM reasoning systematically—LMs achieve higher syllogistic reasoning accuracy than humans while still replicating several fine-grained human-like error patterns that are orthogonal to logical accuracy, including premise ordering effects. These converging findings reveal prediction as a fundamental mechanism in comprehension, production, and reasoning in both humans and LMs. While models achieve this through statistical learning rather than specialized cognitive architecture—often outperforming humans yet replicating their systematic biases—this alignment supports predictive processing theories of cognition. This work establishes LMs as scalable cognitive laboratories that can complement traditional experiments, and contributes psycholinguistically principled methods for understanding and controlling LMs.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Proof-of-Work Based Mitigation of Real Time Video DDoS Attacks</title>
<link href="https://hdl.handle.net/1721.1/164841" rel="alternate"/>
<author>
<name>Echezona, Chukwuemekalum</name>
</author>
<id>https://hdl.handle.net/1721.1/164841</id>
<updated>2026-02-13T03:49:20Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Proof-of-Work Based Mitigation of Real Time Video DDoS Attacks
Echezona, Chukwuemekalum
As the Internet continues to grow in size and complexity, Distributed Denial of Service (DDoS) attacks grow in size and complexity alongside it. One particularly common form of DDoS attack is the TCP SYN flood, which exploits the TCP handshake process to exhaust server resources. This thesis investigates the use of a novel proof-of-work (PoW) based mitigation method to respond to such attacks, specifically in the context of WebRTC video conferencing applications. PoW aims to shift the computational burden from the server to the client, by utilizing a hard to solve puzzle that is easily verifiable. Guided by the same evaluation framework used by the original contributors, we conducted controlled experiments using SPHERE, a national research testbed, and the open-source Jitsi Meet video conference application to simulate DDoS attacks and measure their impact on video quality metrics such as upload/download bitrate and video framerate. Our experiments involved multiple scenarios with and without active attacks and PoW mitigation activate. Results demonstrate that PoW imposes minimal overhead on legitimate clients while maintaining high efficacy when faced with the threat of a SYN Flood attack, regardless of whether the attackers do the proof-of-work before sending traffic. These findings highlight PoW as a promising low overhead mitigation method for WebRTC conference systems under the threat of DDoS attacks.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimizing Priority-Based Search for Lifelong Multi-Agent Path Finding</title>
<link href="https://hdl.handle.net/1721.1/164840" rel="alternate"/>
<author>
<name>Huang, Natalie</name>
</author>
<id>https://hdl.handle.net/1721.1/164840</id>
<updated>2026-02-13T03:49:13Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Optimizing Priority-Based Search for Lifelong Multi-Agent Path Finding
Huang, Natalie
The lifelong Multi-Agent Path Finding (MAPF) problem requires planning collision-free trajectories for agents operating continuously in dynamic environments. Traditional solvers such as Priority-Based Search (PBS) use fixed branching heuristics, which can be inefficient in high-congestion scenarios. This work explores how learning-based methods can improve PBS decision-making. We develop supervised learning (SL) policies trained from high-quality beam search trajectories and reinforcement learning (RL) policies learned directly through simulation, enabling adaptive branching strategies. Evaluations on warehouse-style and Kiva-style maps with varying agent densities show that learned policies can significantly boost throughput in congested warehouse layouts, while identifying scenarios where classical heuristics remain competitive. Our findings provide guidance on solver selection based on environment layout and congestion characteristics.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Learning to Interpret Language Model Diffs</title>
<link href="https://hdl.handle.net/1721.1/164839" rel="alternate"/>
<author>
<name>Goel, Avichal</name>
</author>
<id>https://hdl.handle.net/1721.1/164839</id>
<updated>2026-02-13T03:49:23Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Learning to Interpret Language Model Diffs
Goel, Avichal
Finetuning-induced changes to a model’s weights (a “model diff”) are semantically meaningful but often difficult to interpret. This makes us wonder: can we describe the content of an unknown model diff using natural language? We introduce diff interpretation training, a method that teaches a model describe its own finetuning-induced modifications. Our approach uses synthetic model diffs to train a lightweight adapter, which in turn can be applied to a compatible finetuned model to make it self-describing. Using two simple task settings, we demonstrate that our method can successfully decode model diffs into accurate natural language descriptions.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Product architectures for solar-powered drip irrigation (SPDI) systems in the Middle East and North Africa</title>
<link href="https://hdl.handle.net/1721.1/164838" rel="alternate"/>
<author>
<name>Grant, Fiona R.</name>
</author>
<id>https://hdl.handle.net/1721.1/164838</id>
<updated>2026-02-13T03:10:44Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Product architectures for solar-powered drip irrigation (SPDI) systems in the Middle East and North Africa
Grant, Fiona R.
To feed the growing global population, agriculture production must be intensified using existing land and resources. Sustainable agriculture intensification is particularly important in the Middle East and North Africa (MENA), the most water-stressed region in the world. Solar-powered drip irrigation (SPDI) has the potential to increase water use efficiency and reduce fossil fuel use for irrigation. Despite these benefits, SPDI adoption is limited by its high investment cost and the misalignment between farmers' risk tolerance and broader sustainability goals. Past work has explored three areas of SPDI innovation: low-pressure drip emitters, system cost optimization, and precision irrigation control. This thesis integrates previous innovations in an end-to-end design process to generate SPDI architectures that are accessible to resource-constrained farmers.&#13;
A market study was conducted to understand farmers' priorities and constraints and articulate SPDI value propositions for the target users. Stakeholder surveys were conducted in Jordan and Morocco for farms ranging from 1–130 hectares. Three market segments were identified, grouping farmers who face similar economic and knowledge barriers. While farmers generally prioritized irrigation reliability and low system costs, the observed variety in farm size, production volume, and technical expertise suggested that SPDI architectures must be tailored to each market segment.&#13;
This thesis proposes an energetic framework that captures system parametric relationships to identify feasible SPDI design trade-offs. The optimized solar power systems were 14%–80% less expensive than conventionally-sized designs. Despite significant changes to the hydraulic operating parameters, the proposed SPDI architectures were as reliable as existing systems. For farms with long irrigation times, it was optimal to pair low-pressure drip emitters with an irrigation schedule that tracks the daily solar profile, termed “solar profile matching” (SPM), to maximize direct solar power use. The SPM schedule reduced system cost by minimizing the battery capacity. An economic analysis demonstrated that the optimal SPDI designs could be made cost-competitive with grid power through SPDI retrofit subsidies, which some local governments already support. Researchers and industry professionals could use the energetic framework and techno-economic analysis presented in this thesis to inform system design and policy decisions and promote SPDI adoption.&#13;
Finally, this work created guidelines for designing a precision irrigation controller in resource-constrained markets. A controller was conceptualized to implement the SPDI-SPM architecture. The controller functional requirements and design specifications were iteratively defined with stakeholders, and a prototype was tested on two farms in the MENA region. The controller reduced water and energy use by up to 44% and 43%, respectively, while maintaining crop yield. However, the controller relied on battery power to execute the irrigation schedule. A yield loss sensitivity analysis found that using 72%–79% of the available solar energy on average, an increase of about 40% from the experiment SPM schedules, would have been sufficient to reliably irrigate with solar alone. The results suggest that, with software modifications, the proposed controller could eliminate the need for a battery and enable low-cost SPDI systems. If adopted, the proposed controller could make sustainable irrigation practices more accessible to farmers.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Approximate L² Error Control by Solution Post-Processing for Finite Element Solutions of PDEs with Higher-Order Adaptive Methods</title>
<link href="https://hdl.handle.net/1721.1/164837" rel="alternate"/>
<author>
<name>Botto Tornielli, Marcos Julian</name>
</author>
<id>https://hdl.handle.net/1721.1/164837</id>
<updated>2026-02-13T03:49:17Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Approximate L² Error Control by Solution Post-Processing for Finite Element Solutions of PDEs with Higher-Order Adaptive Methods
Botto Tornielli, Marcos Julian
With the substantial computing resources available today, computational fluid dynamics simulations allow scientists and engineers to simulate physical problems very accurately. However, achieving this accuracy requires a sufficiently refined computational mesh, which is a primary driver for the high cost of complex simulations. Mesh adaptation methods provide an automated way to determine the regions where a mesh needs the most refinement and generate a new mesh that efficiently targets these regions. In this thesis, we build on previous work in a posteriori error estimation and mesh adaptation for finite element methods to propose a new mesh adaptation method based on L² error control by solution post-processing. A key feature of our method is its natural extension to higher-order discretizations while providing a problem-independent adaptation methodology. Problem-independent adaptation methods do not depend on specific information about the partial differential equation (PDE) problem being solved, and can therefore be applied to a wide range of problems without modification. We present numerical results applying the approximate L² error control method to a two-dimensional advection-diffusion problem with anisotropic features. These results demonstrate the proposed method’s ability to generate well-adapted anisotropic meshes for solutions with polynomial orders 1, 2, and 3. We also apply the approximate L² error control method to a more complex two-dimensional Reynolds-Averaged Navier-Stokes problem with turbulent flow over a flat plate. We compare the convergence of the drag coefficient and the characteristics of adapted meshes obtained with the proposed method and with an output-based adaptation approach. As expected, the approximate L² error control method is not as effective as the output-based approach in reaching a converged drag coefficient value, but it nevertheless demonstrates the ability to effectively control the approximate L² error in the Mach field.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Advancing Ubiquitous Tactile Sensing through&#13;
Comprehensive Tooling for Resistive Matrix-Based&#13;
Sensors</title>
<link href="https://hdl.handle.net/1721.1/164836" rel="alternate"/>
<author>
<name>Murphy, Devin</name>
</author>
<id>https://hdl.handle.net/1721.1/164836</id>
<updated>2026-02-13T03:49:25Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Advancing Ubiquitous Tactile Sensing through&#13;
Comprehensive Tooling for Resistive Matrix-Based&#13;
Sensors
Murphy, Devin
Resistive matrix-based tactile sensors offer a scalable and intuitive approach to capturing human-environment interactions, yet deploying them in real-world systems remains challenging because they must remain portable, adaptive, and long-lasting. This thesis presents the WiReSens Toolkit, an open-source hardware and software platform for developing resistive tactile sensing systems that meet the demands of real world applications. The toolkit features adaptive hardware for interfacing with resistive sensors and a web-based GUI that mediates access to otherwise complex functionality, including 1) multi-device programming and wireless visualization across three distinct communication protocols 2) autocalibration methods for adaptive sensitivity and 3) intermittent data transmission for low-power operation. As a use case for the toolkit, the thesis then introduces a method for the automatic design and fabrication of custom tactile sensing gloves using flexible printed circuit boards (FPCBs), enabling rapid, scalable production. Together, these contributions lower barriers to adoption and support broader exploration of tactile sensing in HCI, robotics, and ubiquitous computing.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Topics in Geometric Machine Learning</title>
<link href="https://hdl.handle.net/1721.1/164835" rel="alternate"/>
<author>
<name>Tahmasebi, Behrooz</name>
</author>
<id>https://hdl.handle.net/1721.1/164835</id>
<updated>2026-02-13T03:10:46Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Topics in Geometric Machine Learning
Tahmasebi, Behrooz
Recent advances and the widespread adoption of neural networks have revolutionized machine learning and artificial intelligence. These developments demand learning paradigms capable of processing data from diverse applications and sources. In structured domains such as molecules, graphs, sets, and 3D objects, as well as fields such as drug discovery, materials science, and astronomy, models must account for data structures. The emerging field of geometric machine learning has gained attention for enabling neural networks to handle geometric structures, unlocking novel solutions across scientific disciplines. Despite recent advances, theoretical gaps remain. This thesis aims to address these gaps by studying the benefits and limitations of leveraging geometric structures and symmetries in data. We explore sample complexity, generalization bounds, hypothesis testing for the presence of symmetries in data, time complexity of learning under symmetries, and regularization and optimization in symmetric settings. The goal is to build a robust theoretical framework that validates recent successes and sheds light on unexplored aspects, fostering future progress in geometric machine learning.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantization Methods for Matrix Multiplication and Efficient Transformers</title>
<link href="https://hdl.handle.net/1721.1/164834" rel="alternate"/>
<author>
<name>Savkin, Semyon</name>
</author>
<id>https://hdl.handle.net/1721.1/164834</id>
<updated>2026-02-13T03:49:20Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Quantization Methods for Matrix Multiplication and Efficient Transformers
Savkin, Semyon
We study quantization in Machine Learning. First, we introduce NestQuant — a technique for quantization of matrix products and post-training quantization of LLMs. Beyond reducing the memory footprint, quantization accelerates inference, as the primary bottleneck during autoregressive generation is often the memory bandwidth. NestQuant leverages two nested lattices to construct an efficient vector codebook for quantization, along with practical encoding and decoding algorithms. The approach is grounded in recent theoretical work that characterizes the optimal rate–distortion trade-off for matrix products. Empirically, on Llama-3-8B, it reduces the perplexity gap between full-precision and quantized models by more than 55% relative to the current state-of-the-art technique (SpinQuant). Second, we investigate data-domain quantization for RF signals. We propose a tokenized transformer for source separation that discretizes RF waveforms into learned tokens and operates directly on the resulting sequences, outperforming strong convolutional baselines. Together, these contributions connect information-theoretic limits with deployable systems: structured vector quantizers accelerate LLM inference and enable competitive discrete representations for RF tasks.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Improving Data-Driven Contact Localization and Force Estimation for Barometric Tactile Sensors</title>
<link href="https://hdl.handle.net/1721.1/164833" rel="alternate"/>
<author>
<name>Chun, Ethan</name>
</author>
<id>https://hdl.handle.net/1721.1/164833</id>
<updated>2026-02-13T03:49:15Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Improving Data-Driven Contact Localization and Force Estimation for Barometric Tactile Sensors
Chun, Ethan
Barometric tactile sensors offer a cheap, robust, and customizable means for robots to perceive the world. Central to their operation are models that extract useful information from the sensors’ raw pressure readings. In this work, I focus on improving data-driven methods for single-point contact localization and force estimation using a previously presented three-quarter sphere barometric tactile sensor. To allow modeling of time-dependent effects in the sensor material, I introduce a multi-threaded data collection system that captures ground truth contact and sensor data at exactly 100 Hz. I construct both feed-forward and recurrent networks using this data, finding that a recurrent network achieves a 15% lower mean absolute error for angular contact localization on the sphere compared to prior methods. The recurrent architecture’s computational efficiency ensures that the architecture can still run within the constraints of the sensors’ microcontroller. Despite this improvement, I find that more expressive models such as LSTMs tend to overfit on the collected data and physical phenomena observed during deployment were not well represented by the training metrics. To better understand the extent that these data-driven methods alone can improve sensor performance, I shift focus away from the modeling and analyze the physical sensor instead. I find that viscous effects in the sensor can render the prediction task unlearnable without historical data and that thermal effects introduce a train-test distribution shift. Finally, I discuss design criteria for a theoretical future barometric tactile sensor that may mitigate the effects found during my modeling and analysis.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Probabilistic Programming over Heterogeneous Language&#13;
and Hardware Targets</title>
<link href="https://hdl.handle.net/1721.1/164832" rel="alternate"/>
<author>
<name>Rojas Collins, Elias G.</name>
</author>
<id>https://hdl.handle.net/1721.1/164832</id>
<updated>2026-02-13T03:49:09Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Probabilistic Programming over Heterogeneous Language&#13;
and Hardware Targets
Rojas Collins, Elias G.
Modern probabilistic programming applications, from large-scale Bayesian inference to real-time decision making, require both the expressiveness of CPU-oriented languages such as Gen.jl and the massive parallelism of GPU-backed array languages such as GenJAX, yet existing platforms force users to trade modeling flexibility for performance. This thesis introduces GenUflect, a metalanguage that embeds multiple Gen-compatible dialects inside a single program, allowing each sub-component to run on the most appropriate language and hardware target while preserving Gen’s programmable-inference interface. GenUflect extends Gen’s dynamic-modeling language with the @union, @vmap, @amortize, @amortize≤, and @runtime_union combinators; these macros compile at build-time (or justin-time) to autonomous generative functions written in the target dialect, link them through a lightweight FFI layer, and manage cross-device data via zero-copy MirrorArrays and lazily materialized traces. The resulting programs remain sound by construction because each foreign subtrace is itself a valid Gen generative function. Empirical studies demonstrate that this hybrid approach yields large practical gains. On a split linear-vs-sinusoidal regression task, GenUflect matches pure GenJAX throughput while running higher-order control logic on the CPU, and is up to two orders of magnitude faster than a pure Gen implementation for datasets of 105 points. In a collapsed-Gibbs sampler for a Dirichlet-process mixture model, GenUflect’s elastic allocation (@amortize≤) lets vectorized GPU kernels adapt to a growing number of clusters; the same inference that takes over an hour in Gen executes in seconds with GenUflect. A probabilistic inverse-graphics pipeline further showcases how heterogeneous submodels can cooperate seamlessly within unified inference code. By coupling language interoperability with automated data movement and compile-time code generation, GenUflect bridges the gap between flexibility and speed, enabling scalable, expressive probabilistic programs that natively exploit both CPUs and accelerators.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Under-Coverage of Double Machine Learning Due to Implementation Choices</title>
<link href="https://hdl.handle.net/1721.1/164831" rel="alternate"/>
<author>
<name>Siegmann, Charlotte B.</name>
</author>
<id>https://hdl.handle.net/1721.1/164831</id>
<updated>2026-02-13T03:49:08Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Under-Coverage of Double Machine Learning Due to Implementation Choices
Siegmann, Charlotte B.
Double ML estimators can estimate coefficients of interest with far fewer functional form assumptions than linear econometric methods. However, DML requires researchers to make a range of implementation choices, including the selection of the function class, the random seed, and hyperparameter configurations. While asymptotic theory suggests these choices should not affect final estimates, we show that for 10 economic analyses (8 of them published and peer-reviewed), implementation choices affect the results. In half of the datasets, different implementation choices even change the interpretation of findings between negative, null, or positive effects. We link these results to a framework for empirically assessing the performance of machine-learning-based estimators, focusing on precision, coverage, and susceptibility to manipulation. This is meant to complement asymptotic theory. We demonstrate that the coverage of DML confidence intervals is too low—placing an upper bound of 48% on the expected coverage of conventional 95% confidence intervals for published DML economics papers. We show that in the status quo, the susceptibility of DML to manipulation by researchers is high, but propose ways to mitigate this susceptibility.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimizing Irreversible Perturbations of the Unadjusted Langevin Algorithm</title>
<link href="https://hdl.handle.net/1721.1/164830" rel="alternate"/>
<author>
<name>Zhu, Qianyu Julie</name>
</author>
<id>https://hdl.handle.net/1721.1/164830</id>
<updated>2026-02-13T03:49:05Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Optimizing Irreversible Perturbations of the Unadjusted Langevin Algorithm
Zhu, Qianyu Julie
A central task in Bayesian inference and scientific computing is to compute expectations with respect to probability distributions that are only known up to a normalizing constant. Markov chain Monte Carlo (MCMC) methods, and in particular Langevin dynamics, provide a powerful framework for this task by constructing stochastic processes that converge to the target distribution. However, practical implementations face two challenges: slow mixing when the target distribution is anisotropic or multimodal, and persistent discretization bias introduced by numerical schemes. This thesis investigates irreversible perturbations of overdamped Langevin dynamics, aiming to accelerate mixing while controlling discretization error. Irreversible perturbations introduce skew-symmetric drift terms that preserve the target distribution while inducing rotational flow, thereby enhancing exploration. Although prior work has established their benefits in continuous-time settings, the impact of discretization and the design of optimal perturbations for discrete-time algorithms remain open problems. We develop a framework for optimizing constant (position-independent) irreversible perturbations in the Unadjusted Langevin Algorithm (ULA). Our approach balances two competing objectives: maximizing the spectral gap of the continuous dynamics to accelerate convergence, and minimizing discretization error that drives estimation bias. Motivated by this, we introduce new criteria that jointly evaluate bias and efficiency, and we show how these criteria identify perturbations that improve performance beyond existing constructions. Theoretical analysis is complemented by numerical experiments on Gaussian and nonGaussian targets. These experiments demonstrate that appropriately designed irreversible perturbations can reduce mean-squared error without sacrificing stability, while poorly chosen perturbations can degrade performance. The results highlight the importance of geometry-aware design and motivate systematic optimization strategies for irreversible perturbations. Overall, this work extends the theoretical and practical understanding of irreversible Langevin dynamics, bridging the gap between continuous-time spectral analysis and discrete-time numerical performance. It provides principled tools for constructing efficient MCMC samplers, with potential applications in high-dimensional Bayesian inference and modern machine learning.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Single Camera Motion Compensated Viewpoint Shift</title>
<link href="https://hdl.handle.net/1721.1/164829" rel="alternate"/>
<author>
<name>Snowdon, Adam</name>
</author>
<id>https://hdl.handle.net/1721.1/164829</id>
<updated>2026-02-13T03:49:03Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Single Camera Motion Compensated Viewpoint Shift
Snowdon, Adam
Eye contact is a necessary tool for human connection and in most video conferencing situations, eye contact is not possible. Standard laptop and webcam configurations position the camera at the top of the screen, meaning that when the user looks at other people’s faces in the center of the screen, the camera captures the user looking downward, creating the impression of poor eye contact for remote participants. Solutions involving 3D modeling of the face to synthesize a gaze-corrected view have been explored and exist but are too computationally costly for most personal computers. To address this computational challenge, we draw inspiration from 2D frame interpolation techniques to synthesize a virtual camera view that repositions the user’s apparent gaze toward the camera. Our method uses a single camera located at the top of the user’s screen and requires only a brief setup period. Assuming there is only one user, our approach creates a virtual camera view that transforms the user’s viewpoint from the screen center to the camera position, enabling more realistic eye contact in video conference calls.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Framework for 3D Mouse Brain Reconstruction: RNA-based Stitching of Adjacent Tissue Slices and Co-Registration of Multimodal Imaging Data</title>
<link href="https://hdl.handle.net/1721.1/164828" rel="alternate"/>
<author>
<name>Pan, Jessica N.</name>
</author>
<id>https://hdl.handle.net/1721.1/164828</id>
<updated>2026-02-13T03:48:56Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A Framework for 3D Mouse Brain Reconstruction: RNA-based Stitching of Adjacent Tissue Slices and Co-Registration of Multimodal Imaging Data
Pan, Jessica N.
Mapping the brain’s complex neural networks requires tracing the long-distance pathways of individual axons, a task that demands a comprehensive 3D reconstruction of the brain. Recently, spatially resolved transcriptomics (SRT) methods enable the study of gene expression and biomolecule distribution in each neuron in its spatial context, opening the door to more thoroughly investigating cell-cell interactions between neurons. However, SRT methods are limited to slices of tissue; therefore, computational alignment is essential to reconstruct a cohesive 3D volume while correcting for both batch effects and inherent sample variability. This thesis presents a novel framework that addresses these challenges through three primary contributions. First, a memory-efficient, non-referenced-based algorithm was developed to align the superficial surfaces of adjacent, high-resolution tissue slices. Second, these surface transformations were interpolated through the tissue slices on a proof-of-concept dataset of three adjacent slices. Third, methods for co-transforming fluorescent protein imaging data were explored to fully resolve the cell boundaries between neurons. These three methods are necessary steps towards creating a fully-resolved, multimodal 3D model of the brain.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimizing Non-Convex Objectives to Plan More Optimal&#13;
Motion for Manipulators</title>
<link href="https://hdl.handle.net/1721.1/164827" rel="alternate"/>
<author>
<name>Garg, Shruti</name>
</author>
<id>https://hdl.handle.net/1721.1/164827</id>
<updated>2026-02-13T03:49:11Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Optimizing Non-Convex Objectives to Plan More Optimal&#13;
Motion for Manipulators
Garg, Shruti
Non-convex optimization is essential to tackle increasingly complex and practical problems in kinematic motion planning. Although introducing non-convexity often sacrifices guarantees of feasibility and optimality–making solutions more susceptible to local minima or failure to converge–many robotic systems and tasks are non-convex by nature, necessitating at least somewhat non-convex formulations. In this thesis, we aim to mostly constrain non-convexity to the objective. This optimization structure helps preserve certain feasibility guarantees in theory and usability in practice while enhancing optimality of solutions, even if global optimality is not achieved. In the first chapter, we demonstrate the effectiveness of non-convex objectives in scenarios where motion planning involves a non-convex parameterization of the configuration space. We keep constraints strictly convex, with the non-convexity quarantined to the objective. This structure guarantees a feasible solution given a feasible initial guess. We primarily use our method to post-process Graphs of Convex Sets solutions in three domains: constrained bimanual motion, motion with guaranteed non-collision, and planning in SO(3). In each case, the non-convex objective compensates for distortion introduced by the parameterization, resulting in more efficient and natural motion. In the second chapter, we propose teleoperation scheme with full-body motion planning for non-holonomic mobile manipulators. Our key contribution is a Differential Inverse Kinematics (DiffIK) formulation that crafts non-convex objectives to avoid singularities and joint limits leading to more robust feasible motion. Unlike before, the constraints are not strictly convex, so the optimization has no guarantees of feasibility. However, we mitigate the non-convexity in the constraints as much as we can by linearizing around the robot’s current position and approximating the highly non-convex non-holonomic constraint. We explore multiple formulations for singularity avoidance and empirically demonstrate that integrating these objectives into DiffIK improves motion quality for teleoperation for the RBY-1 robot.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>CableSplat: Optimized 3D Gaussian Splatting for 1D Deformable Pose Estimation</title>
<link href="https://hdl.handle.net/1721.1/164826" rel="alternate"/>
<author>
<name>Pai, Sameer</name>
</author>
<id>https://hdl.handle.net/1721.1/164826</id>
<updated>2026-02-13T03:49:02Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">CableSplat: Optimized 3D Gaussian Splatting for 1D Deformable Pose Estimation
Pai, Sameer
A key challenge in the robotic manipulation of deformable objects is the lack of accurate and efficient systems for estimating their pose in real-time, especially in the presence of occlusion. In this thesis we propose CableSplat, a novel non-parametric method leveraging 3D Gaussian Splatting to estimate the pose of a linear deformable object given RGB images of the object from multiple viewpoints. To facilitate the evaluation of the performance of this method, we develop both simulated and real-world pipelines to collect calibrated and segmented recordings of cables undergoing various manipulations and transformations. We find that our method is consistently able to estimate cable pose to within an average error of ∼2.5mm across simulated tasks. Furthermore, performance on a scene reconstruction metric drops only slightly between simulated and real-world data, suggesting high-fidelity state estimation even in the real world. CableSplat is therefore a promising candidate for the extension of existing manipulation systems to deformables.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>scPhen: Single-Cell Phenotype Predictor for Alzheimer’s&#13;
Disease</title>
<link href="https://hdl.handle.net/1721.1/164825" rel="alternate"/>
<author>
<name>Guo, Sophie J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164825</id>
<updated>2026-02-13T03:49:10Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">scPhen: Single-Cell Phenotype Predictor for Alzheimer’s&#13;
Disease
Guo, Sophie J.
Advances in artificial intelligence (AI) and generative AI for representation learning have transformed our ability to model complex biological systems. Single-cell RNA sequencing (scRNA-seq) provides unprecedented resolution into cellular heterogeneity, offering a powerful substrate for modeling disease circuitry. However, predicting patient-level phenotypes from scRNA-seq remains challenging due to limited sample sizes, variable cell counts, and the computational burden of modeling long-context dependencies. We present scPhen, a flexible, parametric deep-learning framework for phenotype prediction from single-cell transcriptomic data, applied here to Alzheimer’s disease (AD) as a paradigm of complex, heterogeneous pathology. scPhen consists of a cell embedding module and a patient embedding module, designed to capture both fine-grained molecular patterns and higher-order cell–cell relationships. The framework supports multiple architectural backbones, including Transformers, Graph Neural Networks (GNNs), and state-space models such as Mamba, Mamba2, and BiMamba2, allowing exploration of tunable components for optimized performance. Across classification and regression tasks, state-space models, and in particular BiMamba2, demonstrated superior predictive accuracy and computational efficiency compared to Transformer-based and hybrid approaches. We further integrated attention-based multiple instance learning to enable variable cell counts per patient and to prioritize phenotype-informative cellular subsets. Interpretability analyses using Integrated Gradients and cell-level attention scores revealed gene programs and cell populations associated with AD progression, highlighting known neuroinflammatory signatures and suggesting novel molecular targets. By unifying cutting-edge sequence modeling architectures with scalable single-cell analysis, scPhen provides a generalizable, high-resolution approach to phenotype prediction. While demonstrated here in AD, this framework is readily extensible to other complex diseases and multi-modal cellular datasets, bridging computational innovation and biological discovery.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Predicting Task Functional Localizers Using Naturalistic fMRI</title>
<link href="https://hdl.handle.net/1721.1/164824" rel="alternate"/>
<author>
<name>Wilke, Jordan</name>
</author>
<id>https://hdl.handle.net/1721.1/164824</id>
<updated>2026-02-13T03:49:09Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Predicting Task Functional Localizers Using Naturalistic fMRI
Wilke, Jordan
Functional magnetic resonance imaging (fMRI) data collected during naturalistic stimuli has shown promise for predicting individual traits, biomarkers of disease and functional brain localizations, potentially offering advantages over traditional resting-state approaches. This study investigated the use of interpretable deep learning models to predict demographics and functional task localizer activations from fMRI time-series data collected while participants viewed naturalistic stimuli. Using the data of 143 subjects from the Human Connectome Project, I analyzed 7T fMRI scans from participants watching movies to predict sex, age, and functional localizer activations across multiple cognitive tasks. I employed state-of-the-art machine learning architectures, including DICE and Glacier models, specifically chosen for their interpretable design features that build directed connectivity matrices and produce weighted temporal attention maps. These models aimed to capture dynamic brain activity patterns while maintaining the ability to understand which temporal features drive predictions. The results successfully reproduced previous findings for sex classification but showed poor performance for age prediction, with correlations ranging from -0.175 to 0.243. For functional localizer predictions, models initially appeared to achieve high performance with some specific contrasts having correlations around 0.9 and Dice scores generally above 0.6. However, detailed analysis revealed that these models were primarily predicting group averages rather than learning meaningful inter-subject variability, as evidenced by chance-level subject identification accuracy. This finding contrasts with previous works that demonstrated successful prediction of individual differences in functional localizations. The failure to capture inter-subject variability represents a significant limitation, as individual differences in functional regions of interest are crucial for applications such as pre-surgical mapping and disease prediction. My findings suggest that predicting from raw fMRI time-series may require different approaches than those used here, with preprocessed functional connectivity matrices showing promising results, and highlight the importance of sufficient training data to separate signal from noise when learning directly from naturalistic stimuli. Despite these challenges, this work establishes important methodological foundations and identifies key limitations that must be addressed in future research combining naturalistic stimuli with machine learning for fMRI prediction tasks. The findings emphasize the need for models that can capture individual functional differences while maintaining the interpretability necessary for understanding how naturalistic stimuli drive brain-based predictions.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Probabilistic Programming with Low-Level, High-Performance GPU Programmable Inference</title>
<link href="https://hdl.handle.net/1721.1/164823" rel="alternate"/>
<author>
<name>Chung, Karen</name>
</author>
<id>https://hdl.handle.net/1721.1/164823</id>
<updated>2026-02-13T03:49:04Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Probabilistic Programming with Low-Level, High-Performance GPU Programmable Inference
Chung, Karen
GPU-compatible probabilistic programming languages (PPLs) have enabled high-performance, data-parallel programmable inference. However, these systems face fundamental trade-offs between expressiveness and performance, as their GPU code generation is automated and black-boxed, limiting optimization opportunities and imposing restrictions on program expressivity. This thesis introduces GenCUDA, a probabilistic programming system that addresses this limitation by embedding the CUDA GPU programming language directly into a C++/CUDA frontend, enabling GPU programmable inference with fine-grained control over runtime and memory profiles. GenCUDA extends the Gen probabilistic programming architecture by providing a dynamic modeling language (DML) that allows users to write performance-critical sections of generative functions as CUDA kernels while maintaining automatic trace management and the generative function interface (GFI). The system supports both sequential and parallel execution contexts through specialized effect handlers that seamlessly compose CPU and GPU code paths. Key technical contributions include: (1) a high-performance GPU distributions library achieving 10-100× speedups over TensorFlow-Probability, (2) memory-efficient trace management via template-optimized parallel effect handlers, and (3) vectorized generative functions that enable massive parallelization of inference algorithms. We demonstrate GenCUDA’s capabilities through comprehensive benchmarks on inference algorithms applied to diverse models including factor graphs, mixture models, and Hidden Markov Models. Results show significant performance improvements over JAX-based implementations: up to 3× speedup for importance sampling on a hierarchical model, 5.7× speedup for parallel Gibbs sampling on factor graphs, and memory efficiency improvements for large-scale mixture models supporting up to 6× as many clusters compared to existing frameworks’ limits. The system maintains the composability and expressiveness of probabilistic programming while unlocking GPU performance optimization techniques such as kernel fusion and memory hierarchy exploitation that are inaccessible to higher-level frameworks. GenCUDA demonstrates that embedding low-level GPU programming within automated probabilistic inference workflows can achieve both performance gains and algorithmic expressivity without sacrificing the modularity of probabilistic programming paradigms.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Simplifying Equivariant GPU Kernels through Tile-based&#13;
Programming</title>
<link href="https://hdl.handle.net/1721.1/164822" rel="alternate"/>
<author>
<name>Kotak, Mit</name>
</author>
<id>https://hdl.handle.net/1721.1/164822</id>
<updated>2026-02-13T03:49:00Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Simplifying Equivariant GPU Kernels through Tile-based&#13;
Programming
Kotak, Mit
E(3)-equivariant neural networks have demonstrated success across a wide range of 3D modeling tasks. Until recently, they were bottlenecked due to their high memory and wall-time requirements. In this thesis we first provide an overview of recent GPU kernel efforts by both academia and industry that address this issue. These approaches tradeoff performance for engineering complexity, while still being algorithmically bottlenecked at 10 % GPU utilization. We instead trade off engineering complexity for performance. This not only lowers the barrier to GPU programming but also builds an abstraction layer to reason about future algorithmic innovations that can improve GPU utilization. Our kernel &#119861;3, based on the tiling- optimizations in just 100 lines of PyTorch-like code. We explore the performance-simplicity tradeoff with two case studies and demonstrate the practicality of our kernel workflow through downstream integration with a production model. We hope this work serves as inspiration to broaden and deepen existing equivariant kernel efforts.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Chemical exposures in drinking water: contaminant analysis and physicochemical behavior</title>
<link href="https://hdl.handle.net/1721.1/164821" rel="alternate"/>
<author>
<name>Bugher, Nicolette A.</name>
</author>
<id>https://hdl.handle.net/1721.1/164821</id>
<updated>2026-02-13T03:10:41Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Chemical exposures in drinking water: contaminant analysis and physicochemical behavior
Bugher, Nicolette A.
Environmental chemical exposures pose an understudied risk to human health. The quality and accessibility of data on occurrence in the environment and physicochemical behavior of industrial chemicals are integral for accurate exposure risk assessment. In this dissertation, analytical chemistry techniques were developed and leveraged to characterize human exposures to contaminants in drinking water and improve methods for assessing such risks. The occurrence of organic industrial pollutants in domestic well waters was investigated, with a particular focus on the impacts of region-specific industrial activity (e.g., hydraulic fracturing), legacy pollution sites (e.g., Superfund sites), and geochemistry. The exposure risk to water contaminants of domestic well users was further interrogated by evaluating trends in contaminant concentrations resulting from the implementation and maintenance of in-home water treatment devices. The results show widespread, low-dose mixtures of organic pollutants, where the efficacy of removal by in-home water treatment varied by water contaminant class and maintenance frequency. Additionally, analytical methods were optimized to quantify a group of organic water contaminants (i.e., probable carcinogens, N-nitrosamines), improving method sensitivity and critically identifying false-positive interferences. Finally, methods were evaluated and deployed for the determination of physicochemical properties of N-nitrosamines. The results of which demonstrate gaps in existing experimental data, provide a valuable methodological intercomparison (two experimental and two computational approaches), and contribute novel partitioning data. This dissertation addresses gaps in occurrence data, analytical method sensitivity, and reliability of physicochemical parameters for risk assessment. The combination of method development and implementation enables the study of exposures to water contaminant mixtures at health-relevant concentrations, representative of prevalent exposure pathways.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>From coarse fate choice to precise pattern: post-mitotic progenitor targeting</title>
<link href="https://hdl.handle.net/1721.1/164820" rel="alternate"/>
<author>
<name>Nie, Mel F.</name>
</author>
<id>https://hdl.handle.net/1721.1/164820</id>
<updated>2026-02-13T03:49:07Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">From coarse fate choice to precise pattern: post-mitotic progenitor targeting
Nie, Mel F.
Planarians possess remarkable regenerative abilities, driven by pluripotent stem cells called neoblasts. While neoblasts are known to give rise to progenitor cells that form various tissues, whether and the extent to which these progenitors migrate across the animal remains unclear. Irradiation experiments eliminate all neoblasts outside shielded areas, allowing for the visualization of cell migration from the remaining neoblasts, but irradiated animals may not reflect homeostatic progenitor migration patterns. To address this, 5-ethynyl-2’-deoxyuridine (EdU) labeling and plug transplant techniques were used to trace progenitor movement in non-irradiated planarians. Using whole-mount fluorescence in situ hybridization (FISH) and the quantification of EdU-labeled cells, this study demonstrates that progenitor cells are capable of migrating long distances and exhibit a pronounced anterior bias in their movement and integration.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimizing Data Layouts for Evolving Cloud Table Storage</title>
<link href="https://hdl.handle.net/1721.1/164819" rel="alternate"/>
<author>
<name>Sudhir, Sivaprasad</name>
</author>
<id>https://hdl.handle.net/1721.1/164819</id>
<updated>2026-02-13T03:10:39Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Optimizing Data Layouts for Evolving Cloud Table Storage
Sudhir, Sivaprasad
Modern data analytics platforms increasingly adopt disaggregated architectures, storing data in cost-effective cloud object stores. While this approach enables a clean separation of concerns, allowing each layer to be independently managed and scaled, it introduces significant performance bottlenecks due to expensive data movement. Effective data layouts, which organize data to minimize unnecessary data reads, are thus critical to achieving high query performance. However, existing techniques typically rely on manually specified layouts, collect limited metadata, or lack mechanisms to dynamically adapt to changing data and workloads.&#13;
&#13;
This thesis investigates adaptive, metadata-rich, expressive data layouts for cloud table storage. First, we introduce Pando, a correlation-aware layout technique that leverages rich metadata on query predicates to significantly improve data skipping. Next, we propose CopyRight, a partial replication strategy that selectively replicates subsets of data and optimizes each replica differently, efficiently serving heterogeneous query patterns. Finally, we describe Self-Organizing Data Containers (SDCs), a practical table storage layer for the cloud that incrementally reorganizes complex data layouts based on changes in data and workload distributions.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of Ensemble Strategies for Generalization in&#13;
Deepfake Image Detection</title>
<link href="https://hdl.handle.net/1721.1/164818" rel="alternate"/>
<author>
<name>Wagh, Rohan M.</name>
</author>
<id>https://hdl.handle.net/1721.1/164818</id>
<updated>2026-02-13T03:49:01Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Development of Ensemble Strategies for Generalization in&#13;
Deepfake Image Detection
Wagh, Rohan M.
The growing accessibility of generative models has enabled the rapid proliferation of deepfake content, posing significant challenges in image-based biometric security and media authenticity. In this thesis, six diverse facial deepfake image datasets are assembled, and four modern detection models are evaluated in a cross-domain scenario. We observe that individual models fail to generalize to images generated by techniques outside the scope of their training data. This often hinders the applicability of a single model in real-world deepfake detection. This thesis proposes ensemble strategies as a means of addressing this lack of generalization. We find that the ensemble models outperform individual models in classifying deepfake images, particularly in terms of accuracy and recall. An exhaustive evaluation of combinations of models shows that ensembles of similar models provide limited benefit, whereas ensembles of complementary models lead to significant improvements in classification performance. Ensembling models based specifically on accuracy and recall metrics also produces models that lower the rate of more harmful false negative predictions. This work highlights the value of ensemble models in improving generalization across diverse image families and provides a framework for building robustness in real-world deepfake detection systems.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantum information science and underground facilities</title>
<link href="https://hdl.handle.net/1721.1/164817" rel="alternate"/>
<author>
<name>Formaggio, Joseph A</name>
</author>
<id>https://hdl.handle.net/1721.1/164817</id>
<updated>2026-04-14T03:39:00Z</updated>
<published>2023-09-05T00:00:00Z</published>
<summary type="text">Quantum information science and underground facilities
Formaggio, Joseph A
As both nuclear physics and particle physics involve the quantum interactions of many sub-atomic particles, there has&#13;
always existed a strong interplay between these fields and the study of quantum physics and quantum information&#13;
systems (QIS). This interplay has accelerated in recent years, particularly with the emergence of new, highly sensitive&#13;
technologies, nascent access to quantum computing environments at the O(10)-O(100)-bit scale, and the use of coherence and entanglement to enhance sensitivity to novel and exotic phenomena. One unusual area of interplay between the two disciplines that has recently emerged is the role of background radiation and background mitigation on highly sensitive systems such as qubits.
</summary>
<dc:date>2023-09-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reduced-order model to predict thermal conductivity of dimensionally confined materials</title>
<link href="https://hdl.handle.net/1721.1/164816" rel="alternate"/>
<author>
<name>Hosseini, S Aria</name>
</author>
<author>
<name>Greaney, Alex</name>
</author>
<author>
<name>Romano, Giuseppe</name>
</author>
<id>https://hdl.handle.net/1721.1/164816</id>
<updated>2026-04-14T03:38:54Z</updated>
<published>2023-06-27T00:00:00Z</published>
<summary type="text">Reduced-order model to predict thermal conductivity of dimensionally confined materials
Hosseini, S Aria; Greaney, Alex; Romano, Giuseppe
Predicting nanoscale thermal transport in dielectrics requires models, such as the Boltzmann transport equation (BTE), that account for phonon boundary scattering in structures with complex geometries. Although the BTE has been validated against several key experiments, its computational expense limits its applicability. Here, we demonstrate the use of an analytic reduced-order model for predicting the thermal conductivity in dimensionally confined materials, i.e., monolithic and porous thin films, and rectangular and cylindrical nanowires. The approach uses the recently developed “Ballistic Correction Model,” which accounts for materials' full distribution of phonon mean-free-paths. The model is validated against BTE simulations for a selection of base materials, obtaining excellent agreement. By furnishing a precise yet easy-to-use prediction of thermal transport in nanostructures, our work strives to accelerate the identification of materials for energy-conversion and thermal-management applications.
</summary>
<dc:date>2023-06-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Parametric decay instabilities driven by high power helicon waves in DIII-D</title>
<link href="https://hdl.handle.net/1721.1/164815" rel="alternate"/>
<author>
<name>Porkolab, M</name>
</author>
<author>
<name>Pinsker, RI</name>
</author>
<author>
<name>DeGrandchamp, GH</name>
</author>
<author>
<name>Baek, SG</name>
</author>
<author>
<name>Compernolle, B Van</name>
</author>
<author>
<name>Denk, S</name>
</author>
<author>
<name>Petty, CC</name>
</author>
<author>
<name>Tang, SX</name>
</author>
<author>
<name>Thome, KE</name>
</author>
<id>https://hdl.handle.net/1721.1/164815</id>
<updated>2026-04-14T03:38:53Z</updated>
<published>2023-08-18T00:00:00Z</published>
<summary type="text">Parametric decay instabilities driven by high power helicon waves in DIII-D
Porkolab, M; Pinsker, RI; DeGrandchamp, GH; Baek, SG; Compernolle, B Van; Denk, S; Petty, CC; Tang, SX; Thome, KE
High power helicon waves (whistler or very high harmonic fast lower hybrid waves) at a frequency of 476 MHz are being tested for efficient off-axis current drive on DIII-D with the goal of demonstrating profile control in AT plasmas [1-4]. In agreement with earlier theoretical predictions, strong Parametric Decay Instability (PDI) has been observed at injected RF power levels in the range of 0.05-0.5 MW with corresponding electric fields of 10-30 kV/m [5,6]. The dominant driver of the PDI is the E×B and the polarization drift velocity which can drive ion cyclotron quasi-modes and lower hybrid (or IBW) sideband waves unstable [5,6]. Initial experimental results have been obtained with powers up to 0.3 MW showing evidence of strong PDI measured with high-frequency one-turn magnetic probes located at both the outboard and the inboard wall at frequencies set by the usual selection rules [7,8]. Here we review the appropriate analytic formulation to predict such instabilities and present numerical evaluation of frequencies and growth rates relevant to DIII-D plasma parameters. We also assess the convective thresholds for the PDIs, and compared them with experimental observations.
</summary>
<dc:date>2023-08-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Experimental footprints of a water-rich depletion layer in the Herschel–Bulkley pipe flow of solidifying polyelectrolytes</title>
<link href="https://hdl.handle.net/1721.1/164814" rel="alternate"/>
<author>
<name>Nazari, B.</name>
</author>
<author>
<name>Moghimi, E.</name>
</author>
<author>
<name>Bousfield, D. W.</name>
</author>
<id>https://hdl.handle.net/1721.1/164814</id>
<updated>2026-04-14T03:38:58Z</updated>
<published>2023-01-27T00:00:00Z</published>
<summary type="text">Experimental footprints of a water-rich depletion layer in the Herschel–Bulkley pipe flow of solidifying polyelectrolytes
Nazari, B.; Moghimi, E.; Bousfield, D. W.
A fundamental understanding of the transition from fluid-like to gel-like behavior is critical for a range of applications including personal care, pharmaceuticals, food products, batteries, painting, biomaterials, and concrete. The pipe flow behavior of a Herschel–Bulkley fluid is examined by a combination of rheology, ultrasound imaging velocimetry, and pressure measurements together with modeling. The system is a solution of 0.50 wt. % polyelectrolytes of sulfated polysaccharides in water that solidifies on cooling. Fluids with different ionic strengths were pumped at various rates from a reservoir at 80 °C into a pipe submerged in a bath maintained at 20 °C. The fluid velocity, pressure drop ΔP, and temperature were monitored. The same quantities were extracted by solving continuity, energy, and momentum equations. Moreover, the modeling results demonstrate that the local pressure gradient along the pipe dPdx|x is related to the local yield stress near the pipe wall τywall|x, which explains the variations of dPdx|x along the pipe. Experimental results show much lower values for ΔP compared to those from modeling. This discrepancy is exacerbated at higher ionic strengths and smaller flow rates, where fluid shows a higher degree of solidification. The tabulated experimental ΔP data against the solidification onset length Lonset (where the fluid is cool enough to solidify) along with the ultrasound imaging velocimetry associate these discrepancies between experiments and models to a depletion layer of ∼1 μm, reflecting the lubrication effects caused by the water layer at the wall.
</summary>
<dc:date>2023-01-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Radiation pressure of radio frequency waves on turbulence in edge plasmas</title>
<link href="https://hdl.handle.net/1721.1/164813" rel="alternate"/>
<author>
<name>Ram, Abhay K</name>
</author>
<author>
<name>Hizanidis, Kyriakos</name>
</author>
<id>https://hdl.handle.net/1721.1/164813</id>
<updated>2026-04-14T03:39:05Z</updated>
<published>2023-08-18T00:00:00Z</published>
<summary type="text">Radiation pressure of radio frequency waves on turbulence in edge plasmas
Ram, Abhay K; Hizanidis, Kyriakos
The scattering of radio frequency (RF) waves – lower hybrid and helicon waves – by a single cylindrical filament, embedded in a background plasma, is studied using a full-wave analytical theory. While a filament can affect the propagation of RF waves, the radiation force exerted by the waves can influence the filament. The force on a filament is determined using the Maxwell stress tensor. The radiation force can either pull the filament towards the RF source or push it away. The radiation force, in the two frequency ranges, is large enough to impact the motion of a filament and could be measured experimentally. Consequently, it may be possible to modify the edge turbulence using RF waves.
</summary>
<dc:date>2023-08-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Replies to Moran, Gallois, and Bar-On and Johnson</title>
<link href="https://hdl.handle.net/1721.1/164812" rel="alternate"/>
<author>
<name>Byrne, Alex</name>
</author>
<id>https://hdl.handle.net/1721.1/164812</id>
<updated>2026-04-14T03:39:04Z</updated>
<published>2026-01-04T00:00:00Z</published>
<summary type="text">Replies to Moran, Gallois, and Bar-On and Johnson
Byrne, Alex
I am very grateful to Dorit Bar-On, Drew Johnson, André Gallois, and Dick Moran for their thoughtful commentaries. Bar-On, Gallois, and Moran are discussed extensively in Transparency and Self-Knowledge (hereafter T&amp;SK), and their work has been an important source of inspiration for my own. In order to make my contribution to this symposium reasonably compact, I have not attempted to reply to every single point. (One especially notable omission is the alternative account of self-knowledge sketched by Bar-On and Johnson.) Instead, I have concentrated on the main objections.
</summary>
<dc:date>2026-01-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>The end of MAD? Technological innovation and the future of nuclear retaliatory capabilities</title>
<link href="https://hdl.handle.net/1721.1/164811" rel="alternate"/>
<author>
<name>Glaser, Charles L.</name>
</author>
<id>https://hdl.handle.net/1721.1/164811</id>
<updated>2026-04-14T03:38:56Z</updated>
<published>2025-01-30T00:00:00Z</published>
<summary type="text">The end of MAD? Technological innovation and the future of nuclear retaliatory capabilities
Glaser, Charles L.
This article motivates the special issue, explaining the new debate over whether emerging technologies – including small satellites, machine learning, cyber weapons, and quantum technologies – will enable major powers to undermine each others’ nuclear retaliatory capabilities. The first article analyzes key relevant emerging technologies. Following articles explore how emerging technologies will influence the vulnerability of mobile missiles, ballistic missile submarines, and nuclear command-and-control; and the ability of missile defenses against intercontinental range missiles. The final article explores China’s views on the requirements of nuclear deterrence. Overall, the articles suggest that U.S. prospects for achieving a damage-limitation capability are poor and declining.
</summary>
<dc:date>2025-01-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Prototyping longevity services: Tech-driven or human-assisted service?</title>
<link href="https://hdl.handle.net/1721.1/164810" rel="alternate"/>
<author>
<name>Lee, Sheng-Hung</name>
</author>
<author>
<name>Coughlin, Joseph F</name>
</author>
<author>
<name>Yang, Maria</name>
</author>
<id>https://hdl.handle.net/1721.1/164810</id>
<updated>2026-04-14T03:39:02Z</updated>
<published>2025-05-04T00:00:00Z</published>
<summary type="text">Prototyping longevity services: Tech-driven or human-assisted service?
Lee, Sheng-Hung; Coughlin, Joseph F; Yang, Maria
The study investigates the design of longevity services through an experimental comparison of tech-driven and human-assisted service encounters, focusing on six key features: learnability, efficiency, safety, trustworthiness, confidence, and satisfaction. The controlled experiment, which involved 12 gender-balanced participants from Boston, USA, employed four qualitative methods, including surveys, the Think-aloud technique, semi-structured interviews, and transcript analysis supported by computer-assisted qualitative data analysis software (CAQDAS) and its AI-empowered coding function. The study concluded with two insights: 1. Tech-driven services can improve safety, trust, confidence, and satisfaction; and 2. both service encounters are context-sensitive, shaped by participants’ demographics, personality, culture, and environmental factors. Although the small sample size limits the study’s generalizability, the participants’ stories and perceptions offered valuable insights into their implicit needs and subtle behaviors in learning, experiencing, and addressing sensitive, private, and vulnerable topics related to longevity planning.
</summary>
<dc:date>2025-05-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Iraq Petroleum Company’s Infrastructure of “Desert Control” during the British Mandate in the Middle East</title>
<link href="https://hdl.handle.net/1721.1/164809" rel="alternate"/>
<author>
<name>Freeman, Margaret</name>
</author>
<id>https://hdl.handle.net/1721.1/164809</id>
<updated>2026-04-14T03:38:51Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">The Iraq Petroleum Company’s Infrastructure of “Desert Control” during the British Mandate in the Middle East
Freeman, Margaret
This article discusses the infrastructure of the Iraq Petroleum Company (IPC) in the interwar British Mandatory Middle East as belonging to a larger British imperial project for “desert control” through architecture. Britain’s so-called “desert control” was, more accurately, a programme for control over the pastoralist Bedouin tribespeople who were the primary inhabitants of the Mandatory territories’ desert zones. This article identifies the two pillars of Britain’s “desert control” strategy: the use of Bedouin police forces, and the architectural annexation and restriction of water resources from Bedouin tribes. It argues that Mandate Britain’s “desert control” programme was replicated and adapted by the IPC for its own needs to protect its commercial infrastructural investment, the Iraq–Mediterranean Pipeline, in the British Mandatory territories. It compares two building typologies, the Mandate’s “desert outposts” and the IPC pipeline’s pumping stations, as sites where the Bedouin were alternately welcomed into and excluded from imperial and commercial projects in the interest of controlling them.
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Surrogate modelling of surface roughness for asphalt pavements using artificial neural networks: a mechanistic-empirical approach</title>
<link href="https://hdl.handle.net/1721.1/164808" rel="alternate"/>
<author>
<name>Li, Haoran</name>
</author>
<author>
<name>AzariJafari, Hessam</name>
</author>
<author>
<name>Kirchain, Randolph</name>
</author>
<author>
<name>Santos, João</name>
</author>
<author>
<name>Khazanovich, Lev</name>
</author>
<id>https://hdl.handle.net/1721.1/164808</id>
<updated>2026-04-14T03:38:49Z</updated>
<published>2024-12-09T00:00:00Z</published>
<summary type="text">Surrogate modelling of surface roughness for asphalt pavements using artificial neural networks: a mechanistic-empirical approach
Li, Haoran; AzariJafari, Hessam; Kirchain, Randolph; Santos, João; Khazanovich, Lev
Pavement surface smoothness (or roughness) is crucial for traffic safety, driving comfort, and fuel efficiency. As a widely applied roughness indicator, an accurate forecasting of the International Roughness Index (IRI) and its deterioration is essential for the design, maintenance, and management of asphalt pavements. Previous studies have used field measurement data or AASHTOWare Pavement ME Design simulations for the development of machine learning (ML) models to streamline the IRI modelling. However, these models frequently lack the accuracy and robustness of the measurement data or high-fidelity computational simulations they are intended to surrogate. To address this issue, we employed a new adaptive sampling technique to generate an informative yet efficient pavement damage database from Pavement ME simulations. Utilising Artificial Neural Networks (ANNs), we engineered two types of surrogate ML models: (a) Model I, an ANN-based IRI predictive model, and (b) Model II, a hybrid model combining ANN-based predictions of rutting, fatigue damage, and thermal cracking with closed-form relationships between these indicators and IRI. Our findings show that Model II outperforms Model I in IRI modelling accuracy both globally and locally. Moreover, Model II matches IRI simulations of Pavement ME while providing enhanced efficiency and adaptability to a broader spectrum of design considerations.
</summary>
<dc:date>2024-12-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Honoring practices of community-based educators: lessons learned from the collaborative design of a creative mobile app</title>
<link href="https://hdl.handle.net/1721.1/164807" rel="alternate"/>
<author>
<name>Rusk, Natalie</name>
</author>
<author>
<name>Jain, Rupal</name>
</author>
<author>
<name>Martin, Caitlin K.</name>
</author>
<author>
<name>Roque, Ricarose</name>
</author>
<author>
<name>Freitas, João Adriano</name>
</author>
<author>
<name>Molaodi, Linford</name>
</author>
<id>https://hdl.handle.net/1721.1/164807</id>
<updated>2026-04-14T03:38:41Z</updated>
<published>2024-11-29T00:00:00Z</published>
<summary type="text">Honoring practices of community-based educators: lessons learned from the collaborative design of a creative mobile app
Rusk, Natalie; Jain, Rupal; Martin, Caitlin K.; Roque, Ricarose; Freitas, João Adriano; Molaodi, Linford
This paper shares reflections and stories from a collaborative design process between the Lifelong Kindergarten group at the MIT Media Lab and a global network of community-based educators to develop a creative coding app called OctoStudio, which supports children and families to create and share interactive projects on mobile devices. The app design is grounded in practices that community-based educators who are primarily from the Global South have developed around strengths, needs, and interests of children and their communities, as well as constraints and affordances of local infrastructure. We use the lens of minimal computing – which focuses on community context and constraints in decisions about technology – to describe our collaborative work on OctoStudio. We describe trade-offs involved in the design decisions, and highlight insights from the process of collaboration to develop tools and practices that are more responsive and meaningful to communities who are often excluded from design decisions that impact them.
</summary>
<dc:date>2024-11-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Expected Constant Round Byzantine Broadcast under Dishonest Majority</title>
<link href="https://hdl.handle.net/1721.1/164806" rel="alternate"/>
<author>
<name>Wan, Jun</name>
</author>
<author>
<name>Xiao, Hanshen</name>
</author>
<author>
<name>Shi, Elaine</name>
</author>
<author>
<name>Devadas, Srinivas</name>
</author>
<id>https://hdl.handle.net/1721.1/164806</id>
<updated>2026-02-12T03:06:52Z</updated>
<summary type="text">Expected Constant Round Byzantine Broadcast under Dishonest Majority
Wan, Jun; Xiao, Hanshen; Shi, Elaine; Devadas, Srinivas
Byzantine Broadcast (BB) is a central question in distributed systems, and an important challenge is to understand its round complexity. Under the  honest majority setting, it is long known that there exist randomized protocols that can achieve BB in expected constant rounds, regardless of the number of nodes n. However, whether we can match the expected constant round complexity in the corrupt majority setting --- or more precisely, when f &gt; n/2 --- remains unknown, where f denotes the number of corrupt nodes.     In this paper, we are the first to resolve this long-standing question. We show how to achieve BB in expected O((n/(n-f))2) rounds. Our results hold under a weakly adaptive adversary who cannot perform ``after-the-fact removal' of messages already sent by a node before it becomes corrupt. We also assume trusted setup and the Decision Linear (DLIN) assumption in bilinear groups.
</summary>
</entry>
<entry>
<title>Minimum Plane Bichromatic Spanning Trees</title>
<link href="https://hdl.handle.net/1721.1/164805" rel="alternate"/>
<author>
<name>Akitaya, Hugo</name>
</author>
<author>
<name>Biniaz, Ahmad</name>
</author>
<author>
<name>Demaine, Erik</name>
</author>
<author>
<name>Kleist, Linda</name>
</author>
<author>
<name>Stock, Frederick</name>
</author>
<author>
<name>T?th, Csaba D.</name>
</author>
<id>https://hdl.handle.net/1721.1/164805</id>
<updated>2026-02-12T03:06:50Z</updated>
<summary type="text">Minimum Plane Bichromatic Spanning Trees
Akitaya, Hugo; Biniaz, Ahmad; Demaine, Erik; Kleist, Linda; Stock, Frederick; T?th, Csaba D.
For a set of red and blue points in the plane, a minimum bichromatic spanning tree (MinBST) is a shortest spanning tree of the points  such that every edge has a red and a blue endpoint. A MinBST can be computed in O(n log n) time where n is the number of points.  In contrast to the standard Euclidean MST, which is always plane (noncrossing), a MinBST may have edges that cross each other.  However, we prove that a MinBST is quasi-plane, that is, it does not contain three pairwise crossing edges, and we determine the  maximum number of crossings.    Moreover, we study the problem of finding a minimum plane bichromatic spanning tree (MinPBST) which is a shortest bichromatic  spanning tree with pairwise noncrossing edges. This problem is known to be NP-hard. The previous best approximation algorithm,  due to Borgelt et al. (2009), has a ratio of O(sqrt(n)). It is also known that the optimum solution can be computed in polynomial time in  some special cases, for instance, when the points are in convex position, collinear, semi-collinear, or when one color class has constant  size. We present an O(log n)-factor approximation algorithm for the general case.
</summary>
</entry>
<entry>
<title>Nested Dissection Meets IPMs: Planar Min-Cost Flow in Nearly-Linear Time</title>
<link href="https://hdl.handle.net/1721.1/164804" rel="alternate"/>
<author>
<name>Dong, Sally</name>
</author>
<author>
<name>Gao, Yu</name>
</author>
<author>
<name>Goranci, Gramoz</name>
</author>
<author>
<name>Lee, Yin Tat</name>
</author>
<author>
<name>Sachdeva, Sushant</name>
</author>
<author>
<name>Peng, Richard</name>
</author>
<author>
<name>Ye, Guanghao</name>
</author>
<id>https://hdl.handle.net/1721.1/164804</id>
<updated>2026-02-12T03:07:19Z</updated>
<published>2025-07-26T00:00:00Z</published>
<summary type="text">Nested Dissection Meets IPMs: Planar Min-Cost Flow in Nearly-Linear Time
Dong, Sally; Gao, Yu; Goranci, Gramoz; Lee, Yin Tat; Sachdeva, Sushant; Peng, Richard; Ye, Guanghao
We present a nearly-linear time algorithm for finding a minimum-cost flow in planar graphs with polynomially bounded integer costs and  capacities. The previous fastest algorithm for this problem is based on interior point methods (IPMs) and works for general sparse graphs in O(n1.5 polylog n)) time [Daitch-Spielman, STOC'.     Intuitively, ?(n1.5) is a natural runtime barrier for IPM-based methods, since they require ?n iterations, each routing a possibly-dense electrical flow. To break this barrier, we develop a new implicit representation for flows based on generalized nested dissection [Lipton-Rose-Tarjan, SINUM'79] and approximate Schur complements [Kyng-Sachdeva, FOCS'. This implicit representation permits us to design a data structure to route an electrical flow with sparse demands in roughly ?n update time, resulting in a total runtime of O(n polylog n).    Our results immediately extend to all families of separable graphs.
</summary>
<dc:date>2025-07-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Enhancing Electric Vehicle Security and Privacy through Decentralized Identity Management</title>
<link href="https://hdl.handle.net/1721.1/164803" rel="alternate"/>
<author>
<name>Aydeger, Abdullah</name>
</author>
<author>
<name>Zeydan, Engin</name>
</author>
<author>
<name>Mangues-Bafalluy, Josep</name>
</author>
<author>
<name>Arslan, Suayb</name>
</author>
<author>
<name>Turk, Yekta</name>
</author>
<id>https://hdl.handle.net/1721.1/164803</id>
<updated>2026-02-12T03:06:49Z</updated>
<published>2025-09-12T00:00:00Z</published>
<summary type="text">Enhancing Electric Vehicle Security and Privacy through Decentralized Identity Management
Aydeger, Abdullah; Zeydan, Engin; Mangues-Bafalluy, Josep; Arslan, Suayb; Turk, Yekta
In the next decade, electric vehicles (EVs) are expected to contribute to reducing climate change and transforming road mobility significantly. However, the security and privacy of EV charging systems present considerable challenges that need to be addressed. This paper introduces a novel approach by integrating blockchain-based self-sovereign identity (SSI) to enhance the security and privacy of EV charging systems. By leveraging decentralized and immutable nature of blockchain, the proposed SSI framework can ensure secure and private data exchanges between EVs, charging stations, and backend systems. This three-way integration addresses the vulnerabilities identified in existing EV charging methods, such as conductive, inductive, and battery swapping, and complies with cybersecurity regulations like UNECE R155. This paper provides a comprehensive analysis, practical case study, and evaluation of the security and privacy enhancements achieved through the proposed SSI framework, offering valuable insights for industry professionals and researchers. We have conducted extensive end-to-end testing to evaluate the performance of our blockchain-based SSI framework in the EV charging ecosystem, focusing on identity verification, credential management and service orchestration. The results show that the system enables fast wallet creation, efficient metadata retrieval and low-latency service deployment, ensuring seamless identity management and service orchestration.
</summary>
<dc:date>2025-09-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Local Distributed Rounding: Generalized to MIS, Matching, Set Cover, and Beyond</title>
<link href="https://hdl.handle.net/1721.1/164802" rel="alternate"/>
<author>
<name>Faour, Salwa</name>
</author>
<author>
<name>Ghaffari, Mohsen</name>
</author>
<author>
<name>Grunau, Christoph</name>
</author>
<author>
<name>Kuhn, Fabian</name>
</author>
<author>
<name>Rozho?, V?clav</name>
</author>
<id>https://hdl.handle.net/1721.1/164802</id>
<updated>2026-02-12T03:06:46Z</updated>
<summary type="text">Local Distributed Rounding: Generalized to MIS, Matching, Set Cover, and Beyond
Faour, Salwa; Ghaffari, Mohsen; Grunau, Christoph; Kuhn, Fabian; Rozho?, V?clav
We develop a general deterministic distributed method for locally rounding fractional solutions of graph problems for which the analysis can be broken down into analyzing pairs of vertices. Roughly speaking, the method can transform fractional/probabilistic label assignments of the vertices into integral/deterministic label assignments for the vertices, while approximately preserving a potential function that is a linear combination of functions, each of which depends on at most two vertices (subject to some conditions usually satisfied in pairwise analyses). The method unifies and significantly generalizes prior work on deterministic local rounding techniques [Ghaffari, Kuhn FOCS'21; Harris FOCS'19; Fischer, Ghaffari, Kuhn FOCS'17; Fischer DISC' to obtain polylogarithmic-time deterministic distributed solutions for combinatorial graph problems. Our general rounding result enables us to locally and efficiently derandomize a range of distributed algorithms for local graph problems, including maximal independent set (MIS), maximum-weight independent set approximation, and minimum-cost set cover approximation.
</summary>
</entry>
<entry>
<title>Feasibility Study on Heat Pipes for Radio Frequency Antennas</title>
<link href="https://hdl.handle.net/1721.1/164801" rel="alternate"/>
<author>
<name>Jung, Minuk</name>
</author>
<author>
<name>Watterson, Amy</name>
</author>
<author>
<name>Wallace, Gregory M</name>
</author>
<id>https://hdl.handle.net/1721.1/164801</id>
<updated>2026-02-12T03:07:33Z</updated>
<published>2026-02-17T00:00:00Z</published>
<summary type="text">Feasibility Study on Heat Pipes for Radio Frequency Antennas
Jung, Minuk; Watterson, Amy; Wallace, Gregory M
The applicability of a heat pipe is investigated for the cooling of radio frequency antennas in fusion reactors operating at high temperatures. A heat pipe is a passive cooling device that transfers a large amount of heat through the liquid-vapor phase change and pumps the working fluid by the surface tension of the wick structure without moving parts. As the heat pipe is expected to operate near 1000 K, refractory metals or ceramics should be used for wall materials, and liquid metals are primarily considered as the working fluid. However, liquid metals are electrically conductive, and the strong magnetic field perpendicular to the flow direction imposes significant magnetohydrodynamic (MHD) flow resistance in addition to viscous friction, which impairs heat transfer performance. Since a strong magnetic field is inevitable in magnetic confinement fusion reactors, materials with low electrical conductivity should be applied to wall coatings to reduce the MHD effect. Heat flux limitations at a magnetic field of 10 T and a condenser coolant temperature of 773 K are estimated using COMSOL multiphysics, which can capture the fully developed MHD wick flow, laminar/turbulent vapor flow, and heat transfer simultaneously. For simplicity, the generic heat pipe geometry of a straight horizontal cylinder with a length of 2 ft (0.6096 m) is employed. Optimal geometrical parameters are evaluated to meet radial evaporator/condenser heat fluxes greater than 0.1 MW/m2, even under a strong MHD effect.
</summary>
<dc:date>2026-02-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Regional incidence and persistence of high-growth firms: testing ideas from the entrepreneurial ecosystems literature</title>
<link href="https://hdl.handle.net/1721.1/164800" rel="alternate"/>
<author>
<name>Coad, Alex</name>
</author>
<author>
<name>Domnick, Clemens</name>
</author>
<author>
<name>Santoleri, Pietro</name>
</author>
<author>
<name>Srhoj, Stjepan</name>
</author>
<id>https://hdl.handle.net/1721.1/164800</id>
<updated>2026-02-12T03:07:25Z</updated>
<published>2025-01-08T00:00:00Z</published>
<summary type="text">Regional incidence and persistence of high-growth firms: testing ideas from the entrepreneurial ecosystems literature
Coad, Alex; Domnick, Clemens; Santoleri, Pietro; Srhoj, Stjepan
Policymakers and scholars often assume that a higher incidence of high-growth firms (HGFs) is synonymous with vibrant regional economic dynamics, and that HGF shares are persistent over time as entrepreneurial ecosystems (EEs) have slowly changing features. In this paper we test these hypotheses, which are deeply rooted in the EE literature. Results do not provide strong support for the hypothesis that more developed regions feature higher HGF shares. We do find evidence consistent with HGF shares displaying persistency over time. However, we show that more developed regions do not have higher persistence in their HGF shares, and that the strength in persistence does not increase across the HGFs distribution, which does not support path-dependency as the main mechanism behind the observed persistence. Overall, we call for a more nuanced interpretation of both regional HGF shares and the EEs literature.
</summary>
<dc:date>2025-01-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Knives out: response to critics</title>
<link href="https://hdl.handle.net/1721.1/164799" rel="alternate"/>
<author>
<name>Khoo, Justin</name>
</author>
<id>https://hdl.handle.net/1721.1/164799</id>
<updated>2026-02-12T03:07:34Z</updated>
<published>2025-08-09T00:00:00Z</published>
<summary type="text">Knives out: response to critics
Khoo, Justin
Writing a book can feel like a solitary endeavor. You labor for (in my case) years, sometimes talking about parts of the project with others, but mostly toiling alone to work out the consequences of commitments you made months and years prior. I'm grateful for the opportunity to engage with three brilliant interlocutors about these ideas, which for so long seemed to matter to no one besides myself (and maybe my publisher).
</summary>
<dc:date>2025-08-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Toward Ontological Alignment: Coordinating Student Ideas with the Representational System of a Computational Modeling Unit for Science Learning</title>
<link href="https://hdl.handle.net/1721.1/164798" rel="alternate"/>
<author>
<name>Wagh, Aditi</name>
</author>
<author>
<name>Rosenbaum, Leah F.</name>
</author>
<author>
<name>Fuhrmann, Tamar</name>
</author>
<author>
<name>Eloy, Adelmo</name>
</author>
<author>
<name>Blikstein, Paulo</name>
</author>
<author>
<name>Wilkerson, Michelle</name>
</author>
<id>https://hdl.handle.net/1721.1/164798</id>
<updated>2026-02-12T03:07:10Z</updated>
<published>2024-11-18T00:00:00Z</published>
<summary type="text">Toward Ontological Alignment: Coordinating Student Ideas with the Representational System of a Computational Modeling Unit for Science Learning
Wagh, Aditi; Rosenbaum, Leah F.; Fuhrmann, Tamar; Eloy, Adelmo; Blikstein, Paulo; Wilkerson, Michelle
Computational modeling tools present unique opportunities and challenges for student learning. Each tool has a representational system that impacts the kinds of explorations students engage in. Inquiry aligned with a tool’s representational system can support more productive engagement toward target learning goals. However, little research has examined how teachers can make visible the ways students’ ideas about a phenomenon can be expressed and explored within a tool’s representational system. In this paper, we elaborate on the construct of ontological alignment—that is, identifying and leveraging points of resonance between students’ existing ideas and the representational system of a tool. Using interaction analysis, we identify alignment practices adopted by a science teacher and her students in a computational agent-based modeling unit. Specifically, we describe three practices: (1) Elevating student ideas relevant to the tool’s representational system; (2) Exploring and testing links between students’ conceptual and computational models; and (3) Drawing on evidence resonant with the tool’s representational system to differentiate between theories. Finally, we discuss the pedagogical value of ontological alignment as a way to leverage students’ ideas in alignment with a tool’s representational system and suggest the presented practices as exemplary ways to support students’ computational modeling for science learning.
</summary>
<dc:date>2024-11-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Stand Up and Split. Desiring Desertion in Jean Giono and Emmanuelle Lambert</title>
<link href="https://hdl.handle.net/1721.1/164797" rel="alternate"/>
<author>
<name>Perreau, Bruno</name>
</author>
<id>https://hdl.handle.net/1721.1/164797</id>
<updated>2026-02-12T03:07:22Z</updated>
<published>2024-10-19T00:00:00Z</published>
<summary type="text">Stand Up and Split. Desiring Desertion in Jean Giono and Emmanuelle Lambert
Perreau, Bruno
To face the powers that be, contemporary French writer Virginie Despentes proposes a straightforward solution: “stand up and split!” But where to go and with whom? How do we stop the proliferation of contested norms if we clear the decks? In a context of ecological crisis, desiring desertion is not rare even if we have only one world to inhabit. This article analyzes the desire to desert from two texts: Le Déserteur et autres récits (Citation1966 [1973]) by Jean Giono and La Désertion (Citation2018a) by Emmanuelle Lambert. It demonstrates that desertion does not make a clean sweep of the past but rather accepts the desert at the heart of existence. That is, both presence and disappearance.
</summary>
<dc:date>2024-10-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fuel Behavior Implications of Reactor Design Choices in Pressurized Water SMRs</title>
<link href="https://hdl.handle.net/1721.1/164796" rel="alternate"/>
<author>
<name>Halimi, Assil</name>
</author>
<author>
<name>Shirvan, Koroush</name>
</author>
<id>https://hdl.handle.net/1721.1/164796</id>
<updated>2026-02-12T03:07:18Z</updated>
<published>2025-08-03T00:00:00Z</published>
<summary type="text">Fuel Behavior Implications of Reactor Design Choices in Pressurized Water SMRs
Halimi, Assil; Shirvan, Koroush
Small pressurized water reactors can feature boron-free operation, natural circulation mode, reduced-height assemblies, and/or long refueling cycles. This paper attempts to explore core design optimization for each of these design evolutions. In consequence, five core design layouts are developed incorporating boron-free operation with continuous control rod insertion, natural circulation with low burnup/low power density design, natural circulation with high burnup/low power density design, forced circulation with standard core power density design, and forced circulation with high power density design. These cores’ performance is compared to a standard four-loop pressurized water reactor. The design process aims to improve the fuel cycle cost under safety constraints through core design optimization using the CASMO4E/SIMULATE3 reactor physics codes and the FRAPCON4.1 fuel performance assessment tool. Core modeling assumes standard 17×17 PWR fuel assemblies loaded with low enriched uranium up to 5 wt% or low enriched uranium plus (i.e. below 10 wt% enrichment) pellets with gadolinium oxide as the burnable poison. Satisfactory core and fuel performances are obtained for all the designed cores under steady state and considered overpower transients. For low power density operation, long cycle lengths are achieved reaching 2.5-year and 5-year cycles, and peak rod-average burnup is pushed to 83 MWd/kgU. Other cycle lengths are maintained at 18 months. Boron-free operation exhibits the ability to achieve longer cycle lengths at the cost of higher peaking factors leading to high local power and fuel temperatures, which prevents sizable power uprates and is deemed uneconomical. Fuel assembly height reduction allows coolant velocity retrofit, which enables higher core power density without violating the structural integrity of the fuel assembly. As a result, a core power density of 123 kW/L is reached where total cladding hoop strain becomes the limiting parameter.
</summary>
<dc:date>2025-08-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shades of authoritarian digital sovereignty: divergences in Russian and Chinese data localisation regimes</title>
<link href="https://hdl.handle.net/1721.1/164795" rel="alternate"/>
<author>
<name>Khasanova, Liliya</name>
</author>
<author>
<name>Tai, Katharin</name>
</author>
<id>https://hdl.handle.net/1721.1/164795</id>
<updated>2026-02-12T03:07:21Z</updated>
<published>2024-01-02T00:00:00Z</published>
<summary type="text">Shades of authoritarian digital sovereignty: divergences in Russian and Chinese data localisation regimes
Khasanova, Liliya; Tai, Katharin
The concept of sovereignty is now referred to in cyberspace-related policy by a range of governments, both authoritarian and democratic. At the same time, the most prominent proponents of state – or sovereignty-centric models of internet governance are Russia and China, whose positions are often characterised as a shared ‘Sino-Russian’ model. This paper subjects this idea of a shared Sino-Russian approach to empirical scrutiny by conducting a comparative analysis of rules, regulations and policies on data localisation in both countries. By delimiting the research question to regulations on data localisation and cross-border data transfers in both countries, we identify an important set of similarities and differences between the Russian and Chinese approaches. They share some features associated with authoritarian regimes, such as uncertainty around the selective enforcement of broadly formulated rules and a centralised assessment of outbound data transfers. However, we also find significant differences in the level of institutional centralisation, degrees of responsiveness within the policymaking process, and economic logics driving data localisation and cross-border transfer regulations. Based on these findings, we argue that despite a perception that Russia and China adhere to a similar model of authoritarian digital sovereignty, there are significant disparities in their data localisation regimes.
</summary>
<dc:date>2024-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Race, profit, and algorithms: Neighborhood-level analysis of iBuyers’ profit margin</title>
<link href="https://hdl.handle.net/1721.1/164794" rel="alternate"/>
<author>
<name>So, Wonyoung</name>
</author>
<id>https://hdl.handle.net/1721.1/164794</id>
<updated>2026-02-12T03:07:08Z</updated>
<published>2024-10-29T00:00:00Z</published>
<summary type="text">Race, profit, and algorithms: Neighborhood-level analysis of iBuyers’ profit margin
So, Wonyoung
iBuyers are firms that use automated valuation models (AVMs), streamline home buying processes, and provide all-cash offers to purchase homes. Although the previous literature has explored the roles and limitations of iBuyers in the housing market, empirical research on the racial implications of these algorithmic home buying processes remains understudied. Using a spatial lag model, this study shows the spatial clustering of iBuyer profit margins, that iBuyers gain more profits when they resell to individuals than institutions, and that some iBuyers have a statistically significant correlation between their profit margins and the proportion of marginalized racial groups within a census tract, while controlling for individual housing characteristics, neighborhood housing quality and demand, and neighborhood amenities and socioeconomic factors. These findings suggest that the more adeptly iBuyers can forecast housing values, the greater the potential to maximize profits from homeowners in communities of color. Consequently, this research contributes to the understanding of how technological mechanisms operate within a purportedly race-neutral framework and advocates for the development and deployment of algorithmic systems guided by the principles of antisubordination, rather than relying solely on notions of “fairness” and anticlassification.
</summary>
<dc:date>2024-10-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Powering Through the Turn: Finding Time for Concept Exploration Before Industry Stagnation</title>
<link href="https://hdl.handle.net/1721.1/164793" rel="alternate"/>
<author>
<name>Noble, Connery</name>
</author>
<author>
<name>Cameron, Bruce G</name>
</author>
<id>https://hdl.handle.net/1721.1/164793</id>
<updated>2026-02-12T03:07:29Z</updated>
<published>2025-03-15T00:00:00Z</published>
<summary type="text">Powering Through the Turn: Finding Time for Concept Exploration Before Industry Stagnation
Noble, Connery; Cameron, Bruce G
This study examines how the tension between exploration and exploitation affects early-stage development within the engineering teams of large corporations. Using survey data collected from over 900 system engineers and managers, it was observed that exploration decreased as an organization’s market growth declined, but dire market projections prompted a refocus on exploration. In addition, engineers routinely desire more concept exploration time than they perceive that they have available. The authors argue that engineering teams should more intentionally consider their innovation strategy, and that companies with stagnant market growth should invest in concept exploration before they get to a period of market decline.
</summary>
<dc:date>2025-03-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Vital Biodiversity Systems: A Companion Paper</title>
<link href="https://hdl.handle.net/1721.1/164792" rel="alternate"/>
<author>
<name>Westerlaken, Michelle</name>
</author>
<author>
<name>Bischoff, Amanda</name>
</author>
<author>
<name>Mertens, Krishen</name>
</author>
<author>
<name>Pertusa, Alejandro</name>
</author>
<id>https://hdl.handle.net/1721.1/164792</id>
<updated>2026-02-12T03:01:00Z</updated>
<published>2026-02-11T00:00:00Z</published>
<summary type="text">Vital Biodiversity Systems: A Companion Paper
Westerlaken, Michelle; Bischoff, Amanda; Mertens, Krishen; Pertusa, Alejandro
Regenerative and diverse ecosystems are essential to living futures. Healthy ecosystems are more resilient to climate change and are better able to absorb and store carbon. Communities and corporations worldwide are currently establishing how environmental data can best support these processes. This Companion Paper provides the rationale for the Design Brief and synthesizes findings from four years of research across academia, corporate sustainability teams, and community stakeholders. It argues that biodiversity data systems are not neutral repositories but designed artefacts that embed assumptions and values. To redirect innovation, the paper supports the Brief by expanding on its key design principles, criteria, constraints, and propositions that together chart a pathway for ‘vital biodiversity systems’: platforms that embed the aliveness of the ecosystems they mediate.
</summary>
<dc:date>2026-02-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Molecular dynamics simulations and structural bioinformatics of bacterial integral alpha-helical membrane enzymes and their AlphaFold2-predicted water-soluble QTY analogues</title>
<link href="https://hdl.handle.net/1721.1/164791" rel="alternate"/>
<author>
<name>Sajeev-Sheeja, Akash</name>
</author>
<author>
<name>Karagöl, Alper</name>
</author>
<author>
<name>Karagöl, Taner</name>
</author>
<author>
<name>Zhang, Shuguang</name>
</author>
<id>https://hdl.handle.net/1721.1/164791</id>
<updated>2026-02-12T03:07:30Z</updated>
<published>2025-09-29T00:00:00Z</published>
<summary type="text">Molecular dynamics simulations and structural bioinformatics of bacterial integral alpha-helical membrane enzymes and their AlphaFold2-predicted water-soluble QTY analogues
Sajeev-Sheeja, Akash; Karagöl, Alper; Karagöl, Taner; Zhang, Shuguang
The study of integral membrane proteins has long been challenging because of their poor solubility in aqueous environments. We previously used QTY code to enhance the hydrophilicity in alpha-helices, beta-barrels, and monoclonal antibodies by systematically pairwise replacing the hydrophobic amino acids L (leucine) to Q (glutamine), V(valine)/I(isoleucine) to T (threonine), and F (phenylalanine) to Y (tyrosine). The superposed AlphaFold2-predicted structures of alpha-helical transmembrane enzyme variants with &gt;41% amino acid substitutions displayed remarkable similarity to native structures (RMSD 0.3Å-0.7 Å). We conducted molecular dynamics (MD) simulations, which revealed that, even in the absence of a lipid bilayer, the QTY-modified enzymes retained stable dynamics comparable to their membrane-bound forms. Root mean square fluctuation (RMSF) values remained below 2 Å across the transmembrane and core regions, and residue-wise root mean square deviation (RMSD) values were minimal (&lt;3 Å), indicating that the structural integrity of the protein core was largely preserved. These results suggest that the QTY variants, designed for soluble environments, effectively mimic the stability and conformational rigidity of natural membrane-bound enzymes. Our findings show that the QTY code is a simple method for designing water-soluble membrane protein enzymes in different biological scenarios, and it may encourage further experiments to validate our structural bioinformatics research.
</summary>
<dc:date>2025-09-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>City of ‘social saints’: the role of place in driving impact entrepreneurship in Turin, Italy</title>
<link href="https://hdl.handle.net/1721.1/164790" rel="alternate"/>
<author>
<name>Burke, Mary Kathleen</name>
</author>
<author>
<name>Sydow, Alisa</name>
</author>
<author>
<name>Torchia, Daniel</name>
</author>
<author>
<name>Corazza, Laura</name>
</author>
<id>https://hdl.handle.net/1721.1/164790</id>
<updated>2026-02-12T03:07:27Z</updated>
<published>2025-09-15T00:00:00Z</published>
<summary type="text">City of ‘social saints’: the role of place in driving impact entrepreneurship in Turin, Italy
Burke, Mary Kathleen; Sydow, Alisa; Torchia, Daniel; Corazza, Laura
This paper theorizes impact entrepreneurship (IE) in relation to place by examining dynamics at the individual, community, and organizational levels. While existing IE literature emphasizes entrepreneurship aimed at addressing grand challenges, it often adopts an aggregate view that overlooks how locally embedded entrepreneurs access and mobilize social and economic resources. We introduce a novel, multidimensional framework to show how sense of place, community embeddedness and IE interrelate to shape approaches to current social/environmental challenges. Adopting a qualitative approach, this paper investigates how different actors in Turin, Italy, contribute to IE through building on a legacy of social sector institutions. We find that individuals identifying with a place-based vocation of social impact find communities with a shared volition to work together and across organizations. We contribute to understanding how individuals’ senses of place can be leveraged into wider community efforts to support IE in the region. The paper advances the IE concept to account for the individual perspectives influencing local organizing practices and visions for IE rooted in place.
</summary>
<dc:date>2025-09-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Plane Delivery: Towards a Physical Grammar for Large-Scale Digital Fabrication</title>
<link href="https://hdl.handle.net/1721.1/164789" rel="alternate"/>
<author>
<name>Sass, Lawrence</name>
</author>
<id>https://hdl.handle.net/1721.1/164789</id>
<updated>2026-02-12T03:07:12Z</updated>
<published>2025-07-03T00:00:00Z</published>
<summary type="text">Plane Delivery: Towards a Physical Grammar for Large-Scale Digital Fabrication
Sass, Lawrence
There will come a day when computers and robots will participate regularly in designing, fabricating, and delivering homes as customized kits of parts (Sass Citation2008). They will not replace builders. Instead, one possible future is where computers and robots operate as intelligent assistants, discovering, reasoning, and inferring the best solutions using large language models (LLMs). This language will be vector-based on points, lines, and planes of the type Stiny described (Stiny Citation2006). A standard design and builder language is a first step towards automation. The proposed system is of a Lego-style approach to physical house production, used to manage costs, enhance design variety, improve design quality, and, most importantly, facilitate building.
</summary>
<dc:date>2025-07-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Techno-statecraft and industrial strategy: semiconductor development in Arizona</title>
<link href="https://hdl.handle.net/1721.1/164788" rel="alternate"/>
<author>
<name>Kollar, Justin</name>
</author>
<id>https://hdl.handle.net/1721.1/164788</id>
<updated>2026-02-12T03:07:24Z</updated>
<published>2025-05-27T00:00:00Z</published>
<summary type="text">Techno-statecraft and industrial strategy: semiconductor development in Arizona
Kollar, Justin
The resurgence of U.S. industrial strategy discourse is not a centralised return of the state but a territorially fragmented form of techno-statecraft. This article analyzes Arizona's semiconductor expansion as a case in which subnational actors – agencies, utilities, universities, and developers – mobilise infrastructure, land-use policy, and regulatory coordination to attract global capital. Rather than a coherent national plan, Arizona's strategy reflects speculative governance oriented toward risk absorption and territorial readiness. The article situates this conjuncture within longer histories of militarised growth and infrastructural overbuild, contributing to debates on state capitalism, industrial strategy, and the spatial politics of techno-industrial transformation.
</summary>
<dc:date>2025-05-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ideology, Equity, and Structure: Comments on Tzu-wei Hung’s ‘Equity and Marxist Buddhism’</title>
<link href="https://hdl.handle.net/1721.1/164787" rel="alternate"/>
<author>
<name>Haslanger, Sally</name>
</author>
<id>https://hdl.handle.net/1721.1/164787</id>
<updated>2026-02-12T03:07:35Z</updated>
<published>2024-10-01T00:00:00Z</published>
<summary type="text">Ideology, Equity, and Structure: Comments on Tzu-wei Hung’s ‘Equity and Marxist Buddhism’
Haslanger, Sally
In his essay, ‘Equity and Marxist Buddhism’, Tzu-wei Hung argues that Marxist Buddhism brings a commitment to social justice together with a distinctive form of virtue theory. In my commentary, I raise several questions from a Marxian perspective: (1) Might it be argued that Marxist Buddhism is (in the critical sense) ideological (similar to religion) because the spiritual goal of ‘transcendence’ distracts us from the need to fight for emancipation? (2) Can justice as equity be achieved by promoting individual altruism? (3) Aren’t both mainstream accounts of justice and Marxist Buddhism aspirational and so need to rely on non-ideal theory to achieve justice?
</summary>
<dc:date>2024-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A data-driven and context-aware approach for demand forecasting in the beverage industry</title>
<link href="https://hdl.handle.net/1721.1/164786" rel="alternate"/>
<author>
<name>Ma, Benedict Jun</name>
</author>
<author>
<name>Jackson, Ilya</name>
</author>
<author>
<name>Huang, Maggie</name>
</author>
<author>
<name>Villegas, Sebastian</name>
</author>
<author>
<name>Macias-Aguayo, Jaime</name>
</author>
<id>https://hdl.handle.net/1721.1/164786</id>
<updated>2026-02-12T03:07:07Z</updated>
<published>2025-10-10T00:00:00Z</published>
<summary type="text">A data-driven and context-aware approach for demand forecasting in the beverage industry
Ma, Benedict Jun; Jackson, Ilya; Huang, Maggie; Villegas, Sebastian; Macias-Aguayo, Jaime
Accurate demand forecasting is essential for logistics and supply chain management as it enables efficient inventory planning, reduces operational costs, and ensures high service levels across the network. However, in practice, diverse demand patterns of items make this task challenging, and a one-size-fits-all forecasting approach is inadequate. This paper proposes a data-driven and context-aware forecasting framework and tests it by using both endogenous data from a large private-label beverage manufacturer and exogenous features (such as holidays and temperature). Our method begins by classifying SKUs based on demand volume, volatility, and intermittency, and then refining the derived clusters by taking volume distribution into account. Totally, we obtain four distinct clusters, which are (i) stable and high volume, (ii) stable with low volume, (iii) erratic and intermittent, and (iv) lumpy. To explore the appropriate forecasting models for different demand patterns, we employ statistical models (exponential smoothing, ARIMA, and Croston), machine learning models (XGBoost), deep learning models (TiDE and N-BEATS), and even qualitative approaches such as collaborative planning, forecasting, and replenishment (CPFR). Our experimental results suggest which forecasting models are recommended for each demand pattern, and insightful implications are provided for the managers.
</summary>
<dc:date>2025-10-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Adversarial Network Optimization under Bandit Feedback: Maximizing Utility in Non-Stationary Multi-Hop Networks</title>
<link href="https://hdl.handle.net/1721.1/164785" rel="alternate"/>
<author>
<name>Dai, Yan</name>
</author>
<author>
<name>Huang, Longbo</name>
</author>
<id>https://hdl.handle.net/1721.1/164785</id>
<updated>2026-02-11T04:36:10Z</updated>
<published>2025-06-09T00:00:00Z</published>
<summary type="text">Adversarial Network Optimization under Bandit Feedback: Maximizing Utility in Non-Stationary Multi-Hop Networks
Dai, Yan; Huang, Longbo
Stochastic Network Optimization (SNO) concerns scheduling in stochastic queueing systems and has been widely studied in network theory. Classical SNO algorithms require network conditions to be stationary w.r.t. time, which fails to capture the non-stationary components in increasingly many real-world scenarios. Moreover, most existing algorithms in network optimization assume perfect knowledge of network conditions before decision, which again rules out applications where unpredictability in network conditions presents.&#13;
Motivated by these issues, this paper considers Adversarial Network Optimization (ANO) under bandit feedback. Specifically, we consider the task of i) maximizing some unknown and time-varying utility function associated with scheduler's actions, where ii) the underlying network topology is a non-stationary multi-hop network whose conditions change arbitrarily with time, and iii) only bandit feedback (the effect of actually deployed actions) is revealed after decision-making. We propose the UMO2 algorithm, which does not require any pre-decision knowledge or counterfactual feedback, ensures network stability, and also matches the utility maximization performance of any ''mildly varying'' reference policy up to a polynomially decaying gap. To our knowledge, no previous algorithm can handle multi-hop networks or achieve utility maximization guarantees in ANO problems with bandit feedback, whereas ours is able to do both.&#13;
Technically, our method builds upon a novel integration of online learning techniques into the Lyapunov drift-plus-penalty method. Specifically, we propose meticulous analytical techniques to jointly balance online learning and Lyapunov arguments, which is used to handle the complex inter-dependency among queues in multi-hop networks. To tackle the learning obstacles due to potentially unbounded queue sizes and negative queue differences, we design a new online linear optimization algorithm that automatically adapts to the unknown (potentially negative) loss magnitudes. Finally, we also propose a bandit convex optimization algorithm with novel queue-dependent learning rate scheduling that suites drastically varying queue lengths in utility maximization. Our new insights and techniques in online learning can also be of independent interest.
SIGMETRICS Abstracts ’25, Stony Brook, NY, USA
</summary>
<dc:date>2025-06-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>IDAT: A Multi-Modal Dataset and Toolkit for Building and Evaluating Interactive Task-Solving Agents</title>
<link href="https://hdl.handle.net/1721.1/164784" rel="alternate"/>
<author>
<name>Mohanty, Shrestha</name>
</author>
<author>
<name>Arabzadeh, Negar</name>
</author>
<author>
<name>Tupini, Andrea</name>
</author>
<author>
<name>Sun, Yuxuan</name>
</author>
<author>
<name>Skrynnik, Alexey</name>
</author>
<author>
<name>Zholus, Artem</name>
</author>
<author>
<name>C?t?, Marc-Alexandre</name>
</author>
<author>
<name>Kiseleva, Julia</name>
</author>
<id>https://hdl.handle.net/1721.1/164784</id>
<updated>2026-02-11T04:36:14Z</updated>
<published>2025-07-13T00:00:00Z</published>
<summary type="text">IDAT: A Multi-Modal Dataset and Toolkit for Building and Evaluating Interactive Task-Solving Agents
Mohanty, Shrestha; Arabzadeh, Negar; Tupini, Andrea; Sun, Yuxuan; Skrynnik, Alexey; Zholus, Artem; C?t?, Marc-Alexandre; Kiseleva, Julia
Seamless interaction between AI agents and humans using natural language remains a key goal in AI research. This paper addresses the challenges of developing interactive agents capable of understanding and executing grounded natural language instructions through the IGLU competition. Despite advancements, challenges such as a scarcity of appropriate datasets and the need for effective evaluation platforms persist. We introduce a scalable data collection tool for gathering interactive grounded language instructions within a Minecraft-like environment, resulting in a Multi-Modal dataset with around 9,000 utterances and over 1,000 clarification questions. Additionally, we present a Human-in-the-Loop interactive evaluation platform for qualitative analysis and comparison of agent performance through multi-turn communication with human annotators. We offer to the community these assets referred to as IDAT (IGLU Dataset And Toolkit) which aim to advance the development of intelligent, interactive AI agents and provide essential resources for further research.
SIGIR ’25, Padua, Italy
</summary>
<dc:date>2025-07-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Theory to Estimate, Bound, and Manage Systemic Cyber-Risk</title>
<link href="https://hdl.handle.net/1721.1/164783" rel="alternate"/>
<author>
<name>Pal, Ranjan</name>
</author>
<author>
<name>Duan, Konnie</name>
</author>
<author>
<name>Sequeira, Rohan</name>
</author>
<id>https://hdl.handle.net/1721.1/164783</id>
<updated>2026-02-11T04:36:11Z</updated>
<published>2025-06-22T00:00:00Z</published>
<summary type="text">A Theory to Estimate, Bound, and Manage Systemic Cyber-Risk
Pal, Ranjan; Duan, Konnie; Sequeira, Rohan
The market to manage critical infrastructure cyber-risks using cyber insurance (CI) has been growing steadily (but not fast enough) as it is still skeptical of the extent of economic and societal impact of systemic risk across networked supply chains in interdependent IT-driven enterprises. To demystify this skepticism, we first study in this paper the role of (a) the statistical nature of multiple enterprise cyber-risks contributing to aggregate supply chain risk and (b) the graph structure of the underlying enterprise supply chain network, in the statistical spread of aggregate cyber-risk. We provide statistical tail bounds on the aggregate cyber-risk that a risk managing firm such as a cyber insurer is exposed to in a supply chain. Subsequently, we study the problem of aggregate cyber-risk management by cyber re-insurance firms via portfolio design to optimally diversify aggregate/systemic cyber-risk sourced from multiple CIs insuring enterprises on a supply chain. We propose the first mathematical framework for re-insurers to test the operational sustainability of systemic cyber-risk diversification portfolios with respect to the standard Value-at-Risk (VaR) metric for general aggregate cyber risk distributions. We also propose a statistical copula methodology to make systemic cyber-risk portfolio diversification sustainable for re-insurers in scenarios where the sustainability test fails. We validate our theory via Monte Carlo simulations.
SIGSIM-PADS ’25, Santa Fe, NM, USA
</summary>
<dc:date>2025-06-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>14.41 Public Finance and Public Policy, Fall 2010</title>
<link href="https://hdl.handle.net/1721.1/164782" rel="alternate"/>
<author>
<name>Gruber, Jonathan</name>
</author>
<id>https://hdl.handle.net/1721.1/164782</id>
<updated>2026-02-10T18:32:40Z</updated>
<published>2010-01-01T00:00:00Z</published>
<summary type="text">14.41 Public Finance and Public Policy, Fall 2010
Gruber, Jonathan
Explores the role of government in the economy, applying tools of basic microeconomics to answer important policy questions such as government response to global warming, school choice by K-12 students, Social Security versus private retirement savings accounts, government versus private health insurance, setting income tax rates for individuals and corporations.
</summary>
<dc:date>2010-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dynamic Incentive Allocation for City-Scale Deep Decarbonization</title>
<link href="https://hdl.handle.net/1721.1/164781" rel="alternate"/>
<author>
<name>Sitaraman, Anupama</name>
</author>
<author>
<name>Lechowicz, Adam</name>
</author>
<author>
<name>Bashir, Noman</name>
</author>
<author>
<name>Liu, Xutong</name>
</author>
<author>
<name>Hajiesmaili, Mohammad</name>
</author>
<author>
<name>Shenoy, Prashant</name>
</author>
<id>https://hdl.handle.net/1721.1/164781</id>
<updated>2026-02-11T04:35:56Z</updated>
<published>2025-07-16T00:00:00Z</published>
<summary type="text">Dynamic Incentive Allocation for City-Scale Deep Decarbonization
Sitaraman, Anupama; Lechowicz, Adam; Bashir, Noman; Liu, Xutong; Hajiesmaili, Mohammad; Shenoy, Prashant
Greenhouse gas emissions from the residential sector represent a large fraction of global emissions and must be significantly curtailed to achieve ambitious climate goals. To stimulate the adoption of relevant technologies such as rooftop PV and heat pumps, governments and utilities have designed incentives that encourage adoption of decarbonization technologies. However, studies have shown that many of these incentives are inefficient since a substantial fraction of spending does not actually promote adoption. Further, these incentives are not equitably distributed across socioeconomic groups. In this paper, we present a novel data-driven approach that adopts a holistic, emissions-based, and city-scale perspective on decarbonization.  &#13;
We propose an optimization model that dynamically allocates a total incentive budget to households to directly maximize the resultant carbon emissions reduction -- this is in contrast to prior work, which focuses on metrics such as the number of new installations.  We leverage techniques from the multi-armed bandits problem to estimate human factors, such as a household's willingness to adopt new technologies given a certain incentive. We apply our proposed dynamic incentive framework to a city in the Northeast U.S., using real household energy data, grid carbon intensity data, and future price scenarios.  We compare our learning-based technique to two baselines, one "status-quo' baseline using incentives offered by a state and utility, and one simple heuristic baseline. With these baselines, we show that our learning-based technique significantly outperforms both the status-quo baseline and the heuristic baseline, achieving up to 37.88% higher carbon reductions than the status-quo baseline and up to 28.76% higher carbon reductions compared to the heuristic baseline. Additionally, our incentive allocation approach is able to achieve significant carbon reduction even in a broad set of environments, with varying values for electricity and gas prices, and for carbon intensity of the grid. Finally, we show that our framework can accommodate equity-aware constraints to preserve an equitable allocation of incentives across socioeconomic groups while achieving 83.34% of the carbon reductions of the optimal solution on average.
</summary>
<dc:date>2025-07-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Economics of Large Language Models: Token Allocation, Fine-Tuning, and Optimal Pricing</title>
<link href="https://hdl.handle.net/1721.1/164780" rel="alternate"/>
<author>
<name>Bergemann, Dirk</name>
</author>
<author>
<name>Bonatti, Alessandro</name>
</author>
<author>
<name>Smolin, Alex</name>
</author>
<id>https://hdl.handle.net/1721.1/164780</id>
<updated>2026-02-11T04:36:05Z</updated>
<published>2025-07-02T00:00:00Z</published>
<summary type="text">The Economics of Large Language Models: Token Allocation, Fine-Tuning, and Optimal Pricing
Bergemann, Dirk; Bonatti, Alessandro; Smolin, Alex
We develop an economic framework to analyze the optimal pricing and product design of Large Language Models (LLM). Our framework captures several key features of LLMs: variable operational costs of processing input and output tokens; the ability to customize models through fine-tuning; and high-dimensional user heterogeneity in terms of task requirements and error sensitivity. In our model, a monopolistic seller offers multiple versions of LLMs through a menu of products. The optimal pricing structure depends on whether token allocation across tasks is contractible and whether users face scale constraints.&#13;
When it is possible to contract on the entire assignment of tokens to tasks, the seller's problem ("Token Allocations") is an infinite-dimensional screening problem, which is well-known to be difficult. We are nonetheless able to make progress in two important classes of environments: binary environment and two dimensional value-scale heterogeneity, in which case users with similar aggregate value-scale characteristics choose similar levels of fine-tuning and token consumption. When only the total number of tokens is contractible ("Token Packages"), we leverage the tractability of a constant elasticity of substitution framework to drastically simplify the problem: the buyer's type-a function mapping each task to a value of precision- is an index. This index for the value of precision allows the seller to solve a one-dimensional screening problem. The optimal mechanism can be implemented through menus of two-part tariffs, with higher markups for more intensive users. Our results rationalize observed industry practices such as tiered pricing based on model customization and usage levels.
EC ’25, July 7–10, 2025, Stanford, CA, USA
</summary>
<dc:date>2025-07-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Alternates, Assemble! Selecting Optimal Alternates for Citizens’ Assemblies</title>
<link href="https://hdl.handle.net/1721.1/164779" rel="alternate"/>
<author>
<name>Assos, Angelos</name>
</author>
<author>
<name>Baharav, Carmel</name>
</author>
<author>
<name>Flanigan, Bailey</name>
</author>
<author>
<name>Procaccia, Ariel</name>
</author>
<id>https://hdl.handle.net/1721.1/164779</id>
<updated>2026-02-11T04:36:09Z</updated>
<published>2025-07-02T00:00:00Z</published>
<summary type="text">Alternates, Assemble! Selecting Optimal Alternates for Citizens’ Assemblies
Assos, Angelos; Baharav, Carmel; Flanigan, Bailey; Procaccia, Ariel
Citizens' assemblies are an increasingly influential form of deliberative democracy, where randomly selected people discuss policy questions. The legitimacy of these assemblies hinges on their representation of the broader population, but participant dropout often leads to an unbalanced composition. In practice, dropouts are replaced by preselected alternates, but existing methods do not address how to choose these alternates. To address this gap, we introduce an optimization framework for alternate selection. Our algorithmic approach, which leverages learning-theoretic machinery, estimates dropout probabilities using historical data and selects alternates to minimize expected misrepresentation. Our theoretical bounds provide guarantees on sample complexity (with implications for computational efficiency) and on loss due to dropout probability mis-estimation. Empirical evaluation using real-world data demonstrates that, compared to the status quo, our method significantly improves representation while requiring fewer alternates.
EC ’25, July 7–10, 2025, Stanford, CA, USA
</summary>
<dc:date>2025-07-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Does Firm Size Influence the Collection of Sensitive Data?: A Study of Child-Orientated Apps</title>
<link href="https://hdl.handle.net/1721.1/164778" rel="alternate"/>
<author>
<name>Cecere, Grazia</name>
</author>
<author>
<name>Tucker, Catherine</name>
</author>
<author>
<name>Lefrere, Vincent</name>
</author>
<id>https://hdl.handle.net/1721.1/164778</id>
<updated>2026-02-11T04:36:07Z</updated>
<published>2025-07-02T00:00:00Z</published>
<summary type="text">Does Firm Size Influence the Collection of Sensitive Data?: A Study of Child-Orientated Apps
Cecere, Grazia; Tucker, Catherine; Lefrere, Vincent
How does firm size affect the privacy protections offered to customers? On the one hand, it could be that larger firms use their size to amass more data. On the other hand, smaller firms may be less careful in their data protection practices, because they have a different perception of risk. Using data from the Google Play Store over a three-year period, we explore this empirical question in the U.S. children's app market. Our findings indicate that larger app developers consistently implement stronger privacy protections, requesting less sensitive data compared to smaller developers. These results hold across empirical approaches, including instrumental variables and the propensity-score matching approach. Additionally, our analysis shows that mergers between developers and sudden increases in size of the user-bases of the product are associated with reduced data collection. We show that newly created and updated apps produced by large developers collect less data compared to existing apps. Our findings indicate a trend toward standardized privacy practices across different national regulatory regimes. This research highlights the potential for growth-driven improvements in data privacy practices among app developers, regardless of their regulatory context.
EC ’25, July 7–10, 2025, Stanford, CA, USA
</summary>
<dc:date>2025-07-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Inertial Coordination Games</title>
<link href="https://hdl.handle.net/1721.1/164777" rel="alternate"/>
<author>
<name>Koh, Andrew</name>
</author>
<author>
<name>Li, Ricky</name>
</author>
<author>
<name>Uzui, Kei</name>
</author>
<id>https://hdl.handle.net/1721.1/164777</id>
<updated>2026-02-11T04:36:06Z</updated>
<published>2025-07-02T00:00:00Z</published>
<summary type="text">Inertial Coordination Games
Koh, Andrew; Li, Ricky; Uzui, Kei
Coordination lies at the heart of many economic phenomena. A well-known example is currency crises, in which traders decide whether to launch a speculative attack. On one hand, shocks to the currency's fundamentals can propagate: as more traders attack, the central bank's foreign reserves are depleted, which in turn encourages further attacks as traders seek to exploit a weakening currency. On the other hand, shocks can also fizzle out: traders may quickly learn that the central bank's balance sheet is strong, causing pessimism to dissipate and attacks to subside. When do shocks propagate, and when do they fizzle out? In particular, how do these outcomes depend on the speed at which traders learn about the fundamental?&#13;
Motivated by these questions, we propose a model of inertial coordination games—dynamic coordination games where players repeatedly decide whether to take a risky action. The payoff from this risky action depends on (i) a persistent fundamental; and (ii) an endogenous component that depends on others' past play. Players receive private signals about the persistent fundamental over time and form beliefs about the current state. Notably, the current state depends on past play, which in turn depends on past beliefs about play yet farther back into the past. Thus, expectations about histories shape behavior in the present which, in turn, drives the evolution of future states and future play.&#13;
Our main result develops a tight connection between the speed of learning and limit aggregate play: the risk-dominant action is played in the limit if and only if posterior precisions grow sub-quadratically. This has sharp implications for the long-run propagation of shocks. With slow (sub-quadratic) learning, limit play exhibits history independence: initial shocks have no lasting effect, and limit play is determined solely by fundamentals. By contrast, with fast (super-quadratic) learning, limit play is history dependent: initial shocks can be self-fulfilling, and whether they propagate depends jointly on fundamentals, the size of the shock, and the speed of learning. Our results offer a novel perspective on whether 'history' or 'expectations' shape long-run coordination outcomes: in our model, expectations about histories is what matters for whether self-fulfilling spirals occur.&#13;
Finally, we show that the speed of learning also shapes the path of play, focusing on the case of sub-quadratic learning. When signals are precise, aggregate play exhibits a sudden transition from nearly all players choosing the non-risk-dominant action to nearly all players choosing the risk-dominant action. In contrast, when signals are noisy, the transition is gradual, with the share of players choosing the risk-dominant action increasing gradually over time. This suggests that "spikes" in aggregate behavior (such as a sudden and massive sell-off of a currency) can be consistent with transition to limit equilibrium play, and need not indicate an "equilibrium shift."
EC ’25, July 7–10, 2025, Stanford, CA, USA
</summary>
<dc:date>2025-07-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Galley: Modern Query Optimization for Sparse Tensor Programs</title>
<link href="https://hdl.handle.net/1721.1/164776" rel="alternate"/>
<author>
<name>Deeds, Kyle</name>
</author>
<author>
<name>Ahrens, Willow</name>
</author>
<author>
<name>Balazinska, Magdalena</name>
</author>
<author>
<name>Suciu, Dan</name>
</author>
<id>https://hdl.handle.net/1721.1/164776</id>
<updated>2026-02-11T04:36:13Z</updated>
<published>2025-06-18T00:00:00Z</published>
<summary type="text">Galley: Modern Query Optimization for Sparse Tensor Programs
Deeds, Kyle; Ahrens, Willow; Balazinska, Magdalena; Suciu, Dan
The tensor programming abstraction is a foundational paradigm which allows users to write high performance programs via a high-level imperative interface. Recent work on sparse tensor compilers has extended this paradigm to sparse tensors (i.e., tensors where most entries are not explicitly represented). With these systems, users define the semantics of the program and the algorithmic decisions in a concise language that can be compiled to efficient low-level code. However, these systems still require users to make complex decisions about program structure and memory layouts to write efficient programs.&#13;
This work presents .Galley, a system for declarative tensor programming that allows users to write efficient tensor programs without making complex algorithmic decisions. Galley is the first system to perform cost based lowering of sparse tensor algebra to the imperative language of sparse tensor compilers, and the first to optimize arbitrary operators beyond Σ and *. First, it decomposes the input program into a sequence of aggregation steps through a novel extension of the FAQ framework. Second, Galley optimizes and converts each aggregation step to a concrete program, which is compiled and executed with a sparse tensor compiler. We show that Galley produces programs that are 1-300x faster than competing methods for machine learning over joins and 5-20x faster than a state-of-the-art relational database for subgraph counting workloads with a minimal optimization overhead.
</summary>
<dc:date>2025-06-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Virtualizing Cloud Data Infrastructures with BRAD</title>
<link href="https://hdl.handle.net/1721.1/164775" rel="alternate"/>
<author>
<name>Yu, Geoffrey</name>
</author>
<author>
<name>Wu, Ziniu</name>
</author>
<author>
<name>Kossmann, Ferdi</name>
</author>
<author>
<name>Li, Tianyu</name>
</author>
<author>
<name>Markakis, Markos</name>
</author>
<author>
<name>Ngom, Amadou</name>
</author>
<author>
<name>Zhang, Sophie</name>
</author>
<author>
<name>Kraska, Tim</name>
</author>
<author>
<name>Madden, Samuel</name>
</author>
<id>https://hdl.handle.net/1721.1/164775</id>
<updated>2026-02-11T04:36:16Z</updated>
<published>2025-06-22T00:00:00Z</published>
<summary type="text">Virtualizing Cloud Data Infrastructures with BRAD
Yu, Geoffrey; Wu, Ziniu; Kossmann, Ferdi; Li, Tianyu; Markakis, Markos; Ngom, Amadou; Zhang, Sophie; Kraska, Tim; Madden, Samuel
Organizations usually manage their data using multiple specialized cloud database engines (e.g., Aurora, BigQuery, etc.). However, designing and managing multi-engine infrastructures is hard; there can be many designs, each with different performance and costs. Changing the design afterwards (e.g., due to growth) is even more challenging since application code usually ends up tightly coupled to the engines. We propose data infrastructure virtualization. The key idea is to declare a set of virtual database engines (VDBEs), which specify an engine's application-facing properties (e.g., query interface, performance) and its tables, but do not prescribe a concrete engine. An automated planner then decides how to best realize the VDBEs onto physical engines based on the workload. Clients connect to VDBE endpoints and are oblivious to the underlying physical engines-allowing for seamless infrastructure changes. We implemented VDBEs and an automated planner in BRAD: the first data infrastructure virtualization runtime. Our demo will showcase VDBEs and BRAD's automated planner under different workloads.
SIGMOD-Companion ’25, Berlin, Germany
</summary>
<dc:date>2025-06-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>An Efficient Subcritical Multiplication Mode for Monte Carlo Solvers</title>
<link href="https://hdl.handle.net/1721.1/164774" rel="alternate"/>
<author>
<name>Forget, Benoit</name>
</author>
<id>https://hdl.handle.net/1721.1/164774</id>
<updated>2026-02-11T04:36:46Z</updated>
<published>2025-10-20T00:00:00Z</published>
<summary type="text">An Efficient Subcritical Multiplication Mode for Monte Carlo Solvers
Forget, Benoit
This paper presents an efficient Monte Carlo mode for simulating subcritical systems with external sources. While solving these systems as a fixed source is possible, the length of the histories grows significantly as the system nears criticality, making run time significant. Instead, a hybrid method is proposed that leverages the traditional eigensolver while including elements of the external source. The method builds on prior work,but proposes an approach that maintains the size of the source bank and also provides a natural way of scaling tallies with the true multiplication factor. The method is demonstrated on a subcritical sphere with varying point source position and energy spectrum, as well as an approach to criticality problem. The results demonstrate good agreement with the fixed-source mode, with much improved particle tracking rates for near-critical problems.
</summary>
<dc:date>2025-10-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Afterword: Reflections from Afar, with Hope for our Collective Future</title>
<link href="https://hdl.handle.net/1721.1/164773" rel="alternate"/>
<author>
<name>Henderson, Diana E</name>
</author>
<id>https://hdl.handle.net/1721.1/164773</id>
<updated>2026-02-11T04:36:44Z</updated>
<published>2025-10-02T00:00:00Z</published>
<summary type="text">Afterword: Reflections from Afar, with Hope for our Collective Future
Henderson, Diana E
Appearing in the wake of a decade of rapid growth in Indian screen Shakespeare as an academic subspeciality, ‘Adapting Shakespearean Romance in Indian Cinema’ reveals how cross-cultural comparison and attention to popular reception can profitably modify inherited critical assumptions for all Shakespeare’s readership. Taking ‘romance’ as a key term, this afterword considers the possibilities and potential problems of recasting its dominant meaning as thematic, focusing on modern love, rather than as a dramatic subgenre. In a time of increasing political censorship and existential threats to gender studies, greater engagement and exchange between those in other areas of Shakespeare studies with this rich cinematic corpus and its aligned subfield of cross-disciplinary criticism provides reasons for hope and renewed community.
</summary>
<dc:date>2025-10-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Resolving the Contested Future of the GSEs: The Stakes Are High</title>
<link href="https://hdl.handle.net/1721.1/164772" rel="alternate"/>
<author>
<name>Golding, Edward</name>
</author>
<author>
<name>Wachter, Susan</name>
</author>
<id>https://hdl.handle.net/1721.1/164772</id>
<updated>2026-02-11T04:36:37Z</updated>
<published>2025-11-17T00:00:00Z</published>
<summary type="text">Resolving the Contested Future of the GSEs: The Stakes Are High
Golding, Edward; Wachter, Susan
Seventeen years after entering conservatorship, Fannie Mae and Freddie Mac remain central to the future of U.S. housing finance. This paper evaluates the feasibility of their exit from conservatorship without Congressional action, assessing repayment of the federal bailout, capital adequacy under current regulatory frameworks, and the durability of structural reforms. It puts forth a utility model that preserves liquidity, affordability, and mission alignment while mitigating risks of increased mortgage costs. Treasury mechanisms—including commitment fees and stock warrant monetization—are examined as tools to support affordable housing and fulfill charter mandates. A carefully structured exit, supported by robust oversight and capital standards, can balance adequate financial returns with public purpose. A regulatory framework that maintains stable lending standards and pricing over the business cycle is essential to reducing investor-required returns and enhancing affordability, thereby resolving the contested future of the GSEs.
</summary>
<dc:date>2025-11-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Stabilizing far-from-equilibrium (Mo,Ti)S2 thin films by metal sulfurization at reduced temperature</title>
<link href="https://hdl.handle.net/1721.1/164771" rel="alternate"/>
<author>
<name>Li, Yifei</name>
</author>
<author>
<name>Reidy, Kate</name>
</author>
<author>
<name>Penn, Aubrey</name>
</author>
<author>
<name>Lee, Seng Huat</name>
</author>
<author>
<name>Wang, Baoming</name>
</author>
<author>
<name>Ye, Kevin</name>
</author>
<author>
<name>Mao, Zhiqiang</name>
</author>
<author>
<name>Ross, Frances M</name>
</author>
<author>
<name>Jaramillo, R</name>
</author>
<id>https://hdl.handle.net/1721.1/164771</id>
<updated>2026-02-11T04:36:42Z</updated>
<published>2023-02-16T00:00:00Z</published>
<summary type="text">Stabilizing far-from-equilibrium (Mo,Ti)S2 thin films by metal sulfurization at reduced temperature
Li, Yifei; Reidy, Kate; Penn, Aubrey; Lee, Seng Huat; Wang, Baoming; Ye, Kevin; Mao, Zhiqiang; Ross, Frances M; Jaramillo, R
We report the synthesis of large-area, high-Ti-content, Mo1−xTixS2 alloy thin films in the 2H phase at temperature as low as 500 °C using a scalable two-step method of metal film deposition, followed by sulfurization in H2S. Film processing at higher temperature accelerates Ti segregation, film coarsening, and the formation of TiS2 in the 1T phase. Crystal growth at higher temperature results in the formation of multiple binary sulfide phases, in agreement with the equilibrium phase diagram. Making highly metastable, smooth, and uniform single-phase alloy films, therefore, hinges on developing low-temperature processing. Our results are relevant to the development of technologies based on designer transition metal dichalcogenide alloys, including in photonic integrated circuits and gas sensing.
</summary>
<dc:date>2023-02-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Experimental study of lower hybrid wave power absorption on EAST</title>
<link href="https://hdl.handle.net/1721.1/164770" rel="alternate"/>
<author>
<name>Baek, S-G</name>
</author>
<author>
<name>Li, MH</name>
</author>
<author>
<name>Bonoli, PT</name>
</author>
<author>
<name>Ding, BJ</name>
</author>
<author>
<name>Wallace, GM</name>
</author>
<author>
<name>Chen, JL</name>
</author>
<author>
<name>Duan, YM</name>
</author>
<author>
<name>Gong, XZ</name>
</author>
<author>
<name>Qian, JP</name>
</author>
<author>
<name>Wang, L</name>
</author>
<author>
<name>Yang, H</name>
</author>
<author>
<name>Zang, Q</name>
</author>
<author>
<name>Zhang, JY</name>
</author>
<author>
<name>Zhang, XJ</name>
</author>
<id>https://hdl.handle.net/1721.1/164770</id>
<updated>2026-02-11T04:36:40Z</updated>
<published>2023-08-18T00:00:00Z</published>
<summary type="text">Experimental study of lower hybrid wave power absorption on EAST
Baek, S-G; Li, MH; Bonoli, PT; Ding, BJ; Wallace, GM; Chen, JL; Duan, YM; Gong, XZ; Qian, JP; Wang, L; Yang, H; Zang, Q; Zhang, JY; Zhang, XJ
Lower hybrid power absorption analysis is presented on the EAST high-density plasmas using the power modulation technique. The change in the plasma and magnetic energy is monitored to evaluate the power absorption coefficient by linearizing the change for the first 10 msec for the given input power. The power absorption coefficient evaluated is approximately 0.44 (0.35) for 4.6 GHz (2.45 GHz) at n̄e = 3.5x1019 m-3 GENRAY/CQL3D current drive modeling suggests a combination of antenna spectrum, accessibility, and edge losses could primarily be responsible for the observed level of power absorption. Evidence of first-pass parasite LH power flow causing impurity sputtering is also reported, suggesting a need for optimum power coupling. Implications of the experimental findings are discussed.
</summary>
<dc:date>2023-08-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Limiting role of dislocations in high-current AlGaN/GaN hot electron transistors</title>
<link href="https://hdl.handle.net/1721.1/164769" rel="alternate"/>
<author>
<name>Daulton, J. W.</name>
</author>
<author>
<name>Molnar, R. J.</name>
</author>
<author>
<name>Brinkerhoff, J. A.</name>
</author>
<author>
<name>Weir, T. J.</name>
</author>
<author>
<name>Hollis, M. A.</name>
</author>
<author>
<name>Zaslavsky, A.</name>
</author>
<id>https://hdl.handle.net/1721.1/164769</id>
<updated>2026-02-11T04:36:38Z</updated>
<published>2024-02-06T00:00:00Z</published>
<summary type="text">Limiting role of dislocations in high-current AlGaN/GaN hot electron transistors
Daulton, J. W.; Molnar, R. J.; Brinkerhoff, J. A.; Weir, T. J.; Hollis, M. A.; Zaslavsky, A.
III-nitride-based hot electron transistors (HETs) hold significant promise as high-speed, high-power devices. In our previous work, we demonstrated high current density and common-emitter gain at room temperature. Here, we measure multiple devices at cryogenic temperatures, extending the Gummel characteristics past the onset of intervalley scattering at 77 K. We demonstrate a Gummel current gain of 4.7 at a collector current density of 2.6 MA/cm2 at 77 K as well as a peak current density exceeding 3 MA/cm2. From these data, we determine that dislocation-associated inhomogeneities play a limiting role in AlGaN/GaN HETs, controlling the current gain, density, knee voltage, and base-collector leakage. A comparison of two nominally identical devices suggests that even a modest reduction in dislocation density would result in a substantial improvement in HET performance.
</summary>
<dc:date>2024-02-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>SeerCuts: Explainable Attribute Discretization</title>
<link href="https://hdl.handle.net/1721.1/164768" rel="alternate"/>
<author>
<name>Lai, Eugenie</name>
</author>
<author>
<name>Croitoru, Inbal</name>
</author>
<author>
<name>Bitton, Noam</name>
</author>
<author>
<name>Shalem, Ariel</name>
</author>
<author>
<name>Youngmann, Brit</name>
</author>
<author>
<name>Galhotra, Sainyam</name>
</author>
<author>
<name>Rezig, El Kindi</name>
</author>
<author>
<name>Cafarella, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/164768</id>
<updated>2026-02-10T03:07:40Z</updated>
<published>2025-06-22T00:00:00Z</published>
<summary type="text">SeerCuts: Explainable Attribute Discretization
Lai, Eugenie; Croitoru, Inbal; Bitton, Noam; Shalem, Ariel; Youngmann, Brit; Galhotra, Sainyam; Rezig, El Kindi; Cafarella, Michael
This demonstration showcases SeerCuts - a tool that suggests useful and semantically meaningful discretization strategies (partitions) for numerical attributes. SeerCuts is a generic, interactive framework where users specify attributes to discretize and their utility measure for a downstream task of choice. It uses GPT-4o to assess the semantic meaningfulness of candidate partitions and employs an efficient search strategy to explore the vast space of discretization options. With hierarchical clustering to group related partitions and a multi-armed bandit policy to identify useful partitions with only a few samples, SeerCuts quickly finds meaningful and useful partitions. In the demo, we will provide an overview of SeerCuts and allow the audience to explore various datasets and tasks, including data visualization and comprehensive modeling. The users will be able to evaluate how SeerCuts identifies meaningful discretization strategies and compare the tradeoff between different discretization options.
SIGMOD-Companion ’25, Berlin, Germany
</summary>
<dc:date>2025-06-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>PalimpChat: Declarative and Interactive AI analytics</title>
<link href="https://hdl.handle.net/1721.1/164767" rel="alternate"/>
<author>
<name>Liu, Chunwei</name>
</author>
<author>
<name>Vitagliano, Gerardo</name>
</author>
<author>
<name>Rose, Brandon</name>
</author>
<author>
<name>Printz, Matthew</name>
</author>
<author>
<name>Samson, David Andrew</name>
</author>
<author>
<name>Cafarella, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/164767</id>
<updated>2026-02-10T03:07:41Z</updated>
<published>2025-06-22T00:00:00Z</published>
<summary type="text">PalimpChat: Declarative and Interactive AI analytics
Liu, Chunwei; Vitagliano, Gerardo; Rose, Brandon; Printz, Matthew; Samson, David Andrew; Cafarella, Michael
Thanks to the advances in generative architectures and large language models, data scientists can now code pipelines of AI operations to process large collections of unstructured data. Recent progress has seen the rise of declarative AI frameworks (e.g., Palimpzest, Lotus, and DocETL) to build optimized and increasingly complex pipelines, but these systems often remain accessible only to expert programmers. In this demonstration, we present PalimpChat, a chat-based interface to Palimpzest that bridges this gap by letting users create and run sophisticated AI pipelines through natural language alone. By integrating Archytas, a ReAct-based reasoning agent, and Palimpzest's suite of relational and LLM-based operators, PalimpChat provides a practical illustration of how a chat interface can make declarative AI frameworks truly accessible to non-experts.&#13;
Our demo system is publicly available online. At SIGMOD'25, participants can explore three real-world scenarios-scientific discovery, legal discovery, and real estate search-or apply PalimpChat to their own datasets. In this paper, we focus on how PalimpChat, supported by the Palimpzest optimizer, simplifies complex AI workflows such as extracting and analyzing biomedical data.
SIGMOD-Companion ’25, Berlin, Germany
</summary>
<dc:date>2025-06-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>CauSumX: Summarized Causal Explanations For Group-By-Average Queries</title>
<link href="https://hdl.handle.net/1721.1/164766" rel="alternate"/>
<author>
<name>Levy, Nativ</name>
</author>
<author>
<name>Cafarella, Michael</name>
</author>
<author>
<name>Gilad, Amir</name>
</author>
<author>
<name>Roy, Sudeepa</name>
</author>
<author>
<name>Youngmann, Brit</name>
</author>
<id>https://hdl.handle.net/1721.1/164766</id>
<updated>2026-02-10T03:07:39Z</updated>
<published>2025-06-22T00:00:00Z</published>
<summary type="text">CauSumX: Summarized Causal Explanations For Group-By-Average Queries
Levy, Nativ; Cafarella, Michael; Gilad, Amir; Roy, Sudeepa; Youngmann, Brit
Group-by-average SQL queries are a cornerstone of data analysis, often employed to uncover patterns and trends within datasets. However, interpreting the results of these queries can be challenging and time-intensive, particularly when working with large, high-dimensional datasets. Automating the generation of explanations for such queries can greatly enhance analysts' ability to derive meaningful insights while reducing human effort. Effective explanations must balance succinctness and depth, offering insights into different patterns across aggregate results, while crucially reflecting cause-effect relationships rather than mere correlations. This ensures that users can make informed, data-driven decisions grounded in reality. In this demonstration, we present CauSumX, a system that produces concise and causal explanations for group-by-average queries. Leveraging background causal knowledge, CauSumX identifies the key causal factors driving variations in the outcome variable across different groups. The system employs an efficient algorithm based on a recently published paper. We will demonstrate the utility of CauSumX for generating useful summarized causal explanations by interacting with the SIGMOD'25 participants, who will act as data analysts aiming to explain their query results.
SIGMOD-Companion ’25, Berlin, Germany
</summary>
<dc:date>2025-06-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>CausaLens: A System for Summarizing Causal DAGs</title>
<link href="https://hdl.handle.net/1721.1/164765" rel="alternate"/>
<author>
<name>Chen, Noam</name>
</author>
<author>
<name>Zeng, Anna</name>
</author>
<author>
<name>Cafarella, Michael</name>
</author>
<author>
<name>Kenig, Batya</name>
</author>
<author>
<name>Markakis, Markos</name>
</author>
<author>
<name>Mishali, Oren</name>
</author>
<author>
<name>Youngmann, Brit</name>
</author>
<author>
<name>Salimi, Babak</name>
</author>
<id>https://hdl.handle.net/1721.1/164765</id>
<updated>2026-02-10T03:07:04Z</updated>
<published>2025-06-22T00:00:00Z</published>
<summary type="text">CausaLens: A System for Summarizing Causal DAGs
Chen, Noam; Zeng, Anna; Cafarella, Michael; Kenig, Batya; Markakis, Markos; Mishali, Oren; Youngmann, Brit; Salimi, Babak
Causal inference aids researchers in discovering causal relationships, leading to scientific insights. Pearl's causal model uses causal DAGs to estimate causal effects, so DAG correctness is essential for reliable causal conclusions. However, for high-dimensional data, the causal DAGs are often complex beyond human verifiability. Graph summarization is a logical next step, but current methods for general-purpose graph summarization are inadequate for causal DAG summarization, as they are not designed to preserve causal information. In this demonstration, we present a system called CausaLens that summarizes a given causal DAG and balances graph simplification for better understanding and retention of essential causal information for reliable inference directly on the summary DAG. We illustrate that causal inference on the summary DAG is more robust to misspecification in the initial causal DAG compared to performing inference directly on the initial causal DAG, thereby enhancing the robustness of causal inference. We will demonstrate the utility of CausaLens for generating useful summary causal DAGs by interacting with the SIGMOD'25 participants, who will act as data analysts aiming to perform causal analysis on high dimensional datasets.
SIGMOD-Companion ’25, Berlin, Germany
</summary>
<dc:date>2025-06-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>First Workshop on Novel Optimizations for Visionary AI Systems (NOVAS)</title>
<link href="https://hdl.handle.net/1721.1/164764" rel="alternate"/>
<author>
<name>Vitagliano, Gerardo</name>
</author>
<author>
<name>Liu, Chunwei</name>
</author>
<author>
<name>Cao, Lei</name>
</author>
<author>
<name>Sun, Huan</name>
</author>
<author>
<name>Papotti, Paolo</name>
</author>
<id>https://hdl.handle.net/1721.1/164764</id>
<updated>2026-02-10T03:06:46Z</updated>
<published>2025-06-22T00:00:00Z</published>
<summary type="text">First Workshop on Novel Optimizations for Visionary AI Systems (NOVAS)
Vitagliano, Gerardo; Liu, Chunwei; Cao, Lei; Sun, Huan; Papotti, Paolo
The first NOVAS workshop (Novel Optimizations for Visionary AI Systems) is aimed at hosting novel work at the intersection between artificial intelligence and data management. This area has emerged with the rise of transformer-based architectures, which have revolutionized data processing across modalities. While these models benefit from massive pre-training and large-context inference, there are significant challenges related to scalability, determinism, and resource constraints. These issues-long studied in the data management community-have sparked a convergence between generative AI and traditional database research.&#13;
The workshop will be held on June 22nd, in conjunction with SIGMOD/PODS 2025. The workshop solicits regular and short papers on topics including hardware and execution optimizations, high-level programming abstractions, integration of LLMs with relational databases, and new transformer architectures for structured data. By bridging together the different communities of machine learning, data systems, and information retrieval, NOVAS aims at becoming the venue to discuss, share ideas and early results, and spark new research collaborations for the next-generation of data-driven AI systems.
SIGMOD-Companion ’25, Berlin, Germany
</summary>
<dc:date>2025-06-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Data-Efficient Discovery of Hyperelastic TPMS Metamaterials with Extreme Energy Dissipation</title>
<link href="https://hdl.handle.net/1721.1/164763" rel="alternate"/>
<author>
<name>Perroni-Scharf, Maxine</name>
</author>
<author>
<name>Ferguson, Zachary</name>
</author>
<author>
<name>Butruille, Thomas</name>
</author>
<author>
<name>Portela, Carlos</name>
</author>
<author>
<name>Konakovi? Lukovi?, Mina</name>
</author>
<id>https://hdl.handle.net/1721.1/164763</id>
<updated>2026-02-10T03:07:38Z</updated>
<published>2025-07-27T00:00:00Z</published>
<summary type="text">Data-Efficient Discovery of Hyperelastic TPMS Metamaterials with Extreme Energy Dissipation
Perroni-Scharf, Maxine; Ferguson, Zachary; Butruille, Thomas; Portela, Carlos; Konakovi? Lukovi?, Mina
Triply periodic minimal surfaces (TPMS) are a class of metamaterials with a variety of applications and well-known primitive morphologies. We present a new method for discovering novel microscale TPMS structures with exceptional energy-dissipation capabilities, achieving double the energy absorption of the best existing TPMS primitive structure. Our approach employs a parametric representation, allowing seamless interpolation between structures and representing a rich TPMS design space. As simulations are intractable for efficiently optimizing microscale hyperelastic structures, we propose a sample-efficient computational strategy for rapid discovery with limited empirical data from 3D-printed and tested samples that ensures high-fidelity results. We achieve this by leveraging a predictive uncertainty-aware Deep Ensembles model to identify which structures to fabricate and test next. We iteratively refine our model through batch Bayesian optimization, selecting structures for fabrication that maximize exploration of the performance space and exploitation of our energy-dissipation objective. Using our method, we produce the first open-source dataset of hyperelastic microscale TPMS structures, including a set of novel structures that demonstrate extreme energy dissipation capabilities, and show several potential applications of these structures.
SIGGRAPH Conference Papers ’25, Vancouver, BC, Canada
</summary>
<dc:date>2025-07-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Splat and Replace: 3D Reconstruction with Repetitive Elements</title>
<link href="https://hdl.handle.net/1721.1/164762" rel="alternate"/>
<author>
<name>Violante, Nicolas</name>
</author>
<author>
<name>Meuleman, Andr?as</name>
</author>
<author>
<name>Gauthier, Alban</name>
</author>
<author>
<name>Durand, Fredo</name>
</author>
<author>
<name>Groueix, Thibault</name>
</author>
<author>
<name>Drettakis, George</name>
</author>
<id>https://hdl.handle.net/1721.1/164762</id>
<updated>2026-02-10T03:07:03Z</updated>
<published>2025-07-27T00:00:00Z</published>
<summary type="text">Splat and Replace: 3D Reconstruction with Repetitive Elements
Violante, Nicolas; Meuleman, Andr?as; Gauthier, Alban; Durand, Fredo; Groueix, Thibault; Drettakis, George
We leverage repetitive elements in 3D scenes to improve novel view synthesis. Neural Radiance Fields (NeRF) and 3D Gaussian Splatting (3DGS) have greatly improved novel view synthesis but renderings of unseen and occluded parts remain low-quality if the training views are not exhaustive enough. Our key observation is that our environment is often full of repetitive elements. We propose to leverage those repetitions to improve the reconstruction of low-quality parts of the scene due to poor coverage and occlusions. We propose a method that segments each repeated instance in a 3DGS reconstruction, registers them together, and allows information to be shared among instances. Our method improves the geometry while also accounting for appearance variations across instances. We demonstrate our method on a variety of synthetic and real scenes with typical repetitive elements, leading to a substantial improvement in the quality of novel view synthesis.
SIGGRAPH Conference Papers ’25, Vancouver, BC, Canada
</summary>
<dc:date>2025-07-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Variational Elastodynamic Simulation</title>
<link href="https://hdl.handle.net/1721.1/164761" rel="alternate"/>
<author>
<name>Mattos Da Silva, Leticia</name>
</author>
<author>
<name>Sell?n, Silvia</name>
</author>
<author>
<name>Pacheco-Tallaj, Natalia</name>
</author>
<author>
<name>Solomon, Justin</name>
</author>
<id>https://hdl.handle.net/1721.1/164761</id>
<updated>2026-02-10T03:07:26Z</updated>
<published>2025-07-27T00:00:00Z</published>
<summary type="text">Variational Elastodynamic Simulation
Mattos Da Silva, Leticia; Sell?n, Silvia; Pacheco-Tallaj, Natalia; Solomon, Justin
Numerical schemes for time integration are the cornerstone of dynamical simulations for deformable solids. The most popular time integrators for isotropic distortion energies rely on nonlinear root-finding solvers, most prominently, Newton’s method. These solvers are computationally expensive and sensitive to ill-conditioned Hessians and poor initial guesses; these difficulties can particularly hamper the effectiveness of variational integrators, whose momentum conservation properties require reliable root-finding. To tackle these difficulties, this paper shows how to express variational time integration for a large class of elastic energies as an optimization problem with a “hidden” convex substructure. This hidden convexity suggests uses of optimization techniques with rigorous convergence analysis, guaranteed inversion-free elements, and conservation of physical invariants up to tolerance/numerical precision. In particular, we propose an Alternating Direction Method of Multipliers (ADMM) algorithm combined with a proximal operator step to solve our formulation. Empirically, our integrator improves the performance of elastic simulation tasks, as we demonstrate in a number of examples.
SIGGRAPH Conference Papers ’25, Vancouver, BC, Canada
</summary>
<dc:date>2025-07-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Strain-Tunable Thermal Conductivity in Largely Amorphous Polyolefin Fibers via Alignment-Induced Vibrational Delocalization</title>
<link href="https://hdl.handle.net/1721.1/164760" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/164760</id>
<updated>2026-02-10T03:08:05Z</updated>
<published>2026-02-09T00:00:00Z</published>
<summary type="text">Strain-Tunable Thermal Conductivity in Largely Amorphous Polyolefin Fibers via Alignment-Induced Vibrational Delocalization
Developing fast, reversible, and recyclable thermal switches is essential to advance adaptive thermal management. Here, we present a strain-tunable thermal switch based on largely amorphous olefin block copolymer (OBC) fibers, achieving a continuous switching ratio above 2 over 1000 cycles, as well as very short response times below 0.22 s. Using Raman spectroscopy, we quantify vibrational delocalization with increasing strain and demonstrate its direct connection to the observed thermal conductivity changes. We show that unlike prior assumptions linking propagating heat carriers primarily to crystalline domains, alignment in amorphous systems can enable phonon-like modes that dominate transport. To our best knowledge, this work is the first to experimentally probe vibrational delocalization using Raman spectroscopy and to demonstrate that alignment alone can govern the dominant carrier in disordered polymers. These findings establish design strategies for fatigue-resistant, high-performance, and recyclable polymer thermal switches for advanced thermal energy transport applications.
</summary>
<dc:date>2026-02-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Introducing synchromodality: One missing link between transportation and supply chain management</title>
<link href="https://hdl.handle.net/1721.1/164759" rel="alternate"/>
<author>
<name>Acero, Beatriz</name>
</author>
<author>
<name>Saenz, Maria Jesus</name>
</author>
<author>
<name>Luzzini, Davide</name>
</author>
<id>https://hdl.handle.net/1721.1/164759</id>
<updated>2026-02-10T03:07:55Z</updated>
<published>2021-05-24T00:00:00Z</published>
<summary type="text">Introducing synchromodality: One missing link between transportation and supply chain management
Acero, Beatriz; Saenz, Maria Jesus; Luzzini, Davide
This study develops and tests the synchromodality construct, a novel supply chain concept that integrates the flexible use of different transport modes based on real-time information. At a time when global supply chains are complex and subject to uncertainty, synchromodality has emerged at the forefront of research and practice as a tool to ensure efficient delivery performance and thus supply chain competitiveness. Despite synchromodality is attracting the attention of leading companies and policy makers, only scholars within the transport research community have engaged with the topic so far. We believe a supply chain management perspective is missing, but essential, to develop the full potential of synchromodality. Our study shows that synchromodality capabilities encapsulate four key elements: visibility, integration, multi-modal transport, and flexibility. Thanks to a three-stage research approach exploiting multiple methods, this study conceptualizes, develops, and validates the first synchromodality measurement model, which reflects the multidimensional nature of the concept. We hope to set the stage for a number of potential future research opportunities that can explore synchromodality implementation and outcomes.
</summary>
<dc:date>2021-05-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shape Space Spectra</title>
<link href="https://hdl.handle.net/1721.1/164758" rel="alternate"/>
<author>
<name>Chang, Yue</name>
</author>
<author>
<name>Benchekroun, Otman</name>
</author>
<author>
<name>Chiaramonte, Maurizio M.</name>
</author>
<author>
<name>Chen, Peter Yichen</name>
</author>
<author>
<name>Grinspun, Eitan</name>
</author>
<id>https://hdl.handle.net/1721.1/164758</id>
<updated>2026-02-10T03:07:07Z</updated>
<published>2025-07-27T00:00:00Z</published>
<summary type="text">Shape Space Spectra
Chang, Yue; Benchekroun, Otman; Chiaramonte, Maurizio M.; Chen, Peter Yichen; Grinspun, Eitan
Eigenanalysis of differential operators, such as the Laplace operator or elastic energy Hessian, is typically restricted to a single shape and its discretization, limiting reduced order modeling (ROM). We introduce the first eigenanalysis method for continuously parameterized shape families. Given a parametric shape, our method constructs spatial neural fields that represent eigen-functions across the entire shape space. It is agnostic to the specific shape representation, requiring only an inside/outside indicator function that depends on shape parameters. Eigenfunctions are computed by minimizing a variational principle over nested spaces with orthogonality constraints. Since eigenvalues may swap dominance at points of multiplicity, we jointly train multiple eigenfunctions while dynamically reordering them based on their eigenvalues at each step. Through causal gradient filtering, this reordering is reflected in backpropagation. Our method enables applications to operate over shape space, providing a single ROM that encapsulates vibration modes for all shapes, including previously unseen ones. Since our eigenanalysis is differentiable with respect to shape parameters, it facilitates eigenfunction-aware shape optimization. We evaluate our approach on shape optimization for sound synthesis and locomotion, as well as reduced-order modeling for elastodynamic simulation.
</summary>
<dc:date>2025-07-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dynamic Mesh Processing on the GPU</title>
<link href="https://hdl.handle.net/1721.1/164757" rel="alternate"/>
<author>
<name>Mahmoud, Ahmed H.</name>
</author>
<author>
<name>Porumbescu, Serban D.</name>
</author>
<author>
<name>Owens, John D.</name>
</author>
<id>https://hdl.handle.net/1721.1/164757</id>
<updated>2026-04-14T03:20:37Z</updated>
<published>2025-07-27T00:00:00Z</published>
<summary type="text">Dynamic Mesh Processing on the GPU
Mahmoud, Ahmed H.; Porumbescu, Serban D.; Owens, John D.
We present a system for dynamic triangle mesh processing entirely on the GPU. Our system features an efficient data structure that enables rapid updates to mesh connectivity and attributes. By partitioning the mesh into small patches, we process all dynamic updates for each patch within the GPU's fast shared memory. This approach leverages speculative processing for conflict handling, minimizing rollback costs, maximizing parallelism, and reducing locking overhead. Additionally, we introduce a new programming model for dynamic mesh processing. This model provides concise semantics for dynamic updates, abstracting away concerns about conflicting updates during parallel execution. At the core of our model is the cavity operator, a general mesh update operator that facilitates any dynamic operation by removing a set of mesh elements and inserting new ones into the resulting void. We applied our system to various GPU applications, including isotropic remeshing, surface tracking, mesh decimation, and Delaunay edge flips. On large inputs, our system achieves an order-of-magnitude speedup compared to multi-threaded CPU solutions and is more than two orders of magnitude faster than state-of-the-art single-threaded CPU solutions. Furthermore, our data structure outperforms state-of-the-art GPU static data structures in terms of both speed and memory efficiency.
</summary>
<dc:date>2025-07-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Exciton Fine Structure in 2D Perovskites: The Out‐of‐Plane Excitonic State</title>
<link href="https://hdl.handle.net/1721.1/164756" rel="alternate"/>
<author>
<name>Posmyk, Katarzyna</name>
</author>
<author>
<name>Dyksik, Mateusz</name>
</author>
<author>
<name>Surrente, Alessandro</name>
</author>
<author>
<name>Maude, Duncan K</name>
</author>
<author>
<name>Zawadzka, Natalia</name>
</author>
<author>
<name>Babiński, Adam</name>
</author>
<author>
<name>Molas, Maciej R</name>
</author>
<author>
<name>Paritmongkol, Watcharaphol</name>
</author>
<author>
<name>Mączka, Mirosław</name>
</author>
<author>
<name>Tisdale, William A</name>
</author>
<author>
<name>Plochocka, Paulina</name>
</author>
<author>
<name>Baranowski, Michał</name>
</author>
<id>https://hdl.handle.net/1721.1/164756</id>
<updated>2026-04-14T03:38:37Z</updated>
<published>2024-07-23T00:00:00Z</published>
<summary type="text">Exciton Fine Structure in 2D Perovskites: The Out‐of‐Plane Excitonic State
Posmyk, Katarzyna; Dyksik, Mateusz; Surrente, Alessandro; Maude, Duncan K; Zawadzka, Natalia; Babiński, Adam; Molas, Maciej R; Paritmongkol, Watcharaphol; Mączka, Mirosław; Tisdale, William A; Plochocka, Paulina; Baranowski, Michał
2D Ruddlesden-Popper metal-halide perovskites feature particularly strong excitonic effects, making them a fascinating playground for studying exciton physics. A complete understanding of the properties of this quasi-particle is crucial to fully exploit the tremendous potential of 2D perovskites (2DP) in light emission applications. Despite intense investigations, some of the exciton properties remain elusive to date, for example, the energy-ordering of the exciton states within the so-called fine structure manifold. Using optical spectroscopy, it demonstrates that in the archetypical 2DP (PEA)2PbI4, in contradiction to theoretical predictions, the energy of the bright out-of-plane exciton state is higher than that of two in-plane states. Having elucidated the order of exciton fine structure, it determines the g-factor of the dark exciton transition, together with the values of the electron and hole g-factors in the direction parallel to the c-axis of the crystal. In this way, it provides for the first time, a complete picture of the exciton fine structure in (PEA)2PbI4 2DP.
</summary>
<dc:date>2024-07-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Discovery of enhanced lattice dynamics in a single-layered hybrid perovskite</title>
<link href="https://hdl.handle.net/1721.1/164755" rel="alternate"/>
<author>
<name>Zhang, Zhuquan</name>
</author>
<author>
<name>Zhang, Jiahao</name>
</author>
<author>
<name>Liu, Zi-Jie</name>
</author>
<author>
<name>Dahod, Nabeel S</name>
</author>
<author>
<name>Paritmongkol, Watcharaphol</name>
</author>
<author>
<name>Brown, Niamh</name>
</author>
<author>
<name>Stollmann, Alexia</name>
</author>
<author>
<name>Lee, Woo Seok</name>
</author>
<author>
<name>Chien, Yu-Che</name>
</author>
<author>
<name>Dai, Zhenbang</name>
</author>
<author>
<name>Nelson, Keith A</name>
</author>
<author>
<name>Tisdale, William A</name>
</author>
<author>
<name>Rappe, Andrew M</name>
</author>
<author>
<name>Baldini, Edoardo</name>
</author>
<id>https://hdl.handle.net/1721.1/164755</id>
<updated>2026-04-14T03:38:36Z</updated>
<published>2023-08-16T00:00:00Z</published>
<summary type="text">Discovery of enhanced lattice dynamics in a single-layered hybrid perovskite
Zhang, Zhuquan; Zhang, Jiahao; Liu, Zi-Jie; Dahod, Nabeel S; Paritmongkol, Watcharaphol; Brown, Niamh; Stollmann, Alexia; Lee, Woo Seok; Chien, Yu-Che; Dai, Zhenbang; Nelson, Keith A; Tisdale, William A; Rappe, Andrew M; Baldini, Edoardo
Layered hybrid perovskites exhibit emergent physical properties and exceptional functional performances, but the coexistence of lattice order and structural disorder severely hinders our understanding of these materials. One unsolved problem regards how the lattice dynamics are affected by the dimensional engineering of the inorganic frameworks and their interaction with the molecular moieties. Here, we address this question by using a combination of spontaneous Raman scattering, terahertz spectroscopy, and molecular dynamics simulations. This approach reveals the structural dynamics in and out of equilibrium and provides unexpected observables that differentiate single- and double-layered perovskites. While no distinct vibrational coherence is observed in double-layered perovskites, an off-resonant terahertz pulse can drive a long-lived coherent phonon mode in the single-layered system. This difference highlights the dramatic change in the lattice environment as the dimension is reduced, and the findings pave the way for ultrafast structural engineering and high-speed optical modulators based on layered perovskites.
</summary>
<dc:date>2023-08-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bright Excitonic Fine Structure in Metal-Halide Perovskites: From Two-Dimensional to Bulk</title>
<link href="https://hdl.handle.net/1721.1/164754" rel="alternate"/>
<author>
<name>Posmyk, Katarzyna</name>
</author>
<author>
<name>Zawadzka, Natalia</name>
</author>
<author>
<name>Łucja Kipczak</name>
</author>
<author>
<name>Dyksik, Mateusz</name>
</author>
<author>
<name>Surrente, Alessandro</name>
</author>
<author>
<name>Maude, Duncan K</name>
</author>
<author>
<name>Kazimierczuk, Tomasz</name>
</author>
<author>
<name>Babiński, Adam</name>
</author>
<author>
<name>Molas, Maciej R</name>
</author>
<author>
<name>Bumrungsan, Wakul</name>
</author>
<author>
<name>Chooseng, Chanisara</name>
</author>
<author>
<name>Paritmongkol, Watcharaphol</name>
</author>
<author>
<name>Tisdale, William A</name>
</author>
<author>
<name>Baranowski, Michał</name>
</author>
<author>
<name>Plochocka, Paulina</name>
</author>
<id>https://hdl.handle.net/1721.1/164754</id>
<updated>2026-04-14T03:39:08Z</updated>
<published>2024-02-07T00:00:00Z</published>
<summary type="text">Bright Excitonic Fine Structure in Metal-Halide Perovskites: From Two-Dimensional to Bulk
Posmyk, Katarzyna; Zawadzka, Natalia; Łucja Kipczak; Dyksik, Mateusz; Surrente, Alessandro; Maude, Duncan K; Kazimierczuk, Tomasz; Babiński, Adam; Molas, Maciej R; Bumrungsan, Wakul; Chooseng, Chanisara; Paritmongkol, Watcharaphol; Tisdale, William A; Baranowski, Michał; Plochocka, Paulina
The optical response of two-dimensional (2D) perovskites, often referred to as natural quantum wells, is primarily governed by excitons, whose properties can be readily tuned by adjusting the perovskite layer thickness. We have investigated the exciton fine structure splitting in the archetypal 2D perovskite (PEA)2(MA)n−1PbnI3n+1 with varying numbers of inorganic octahedral layers n = 1, 2, 3, and 4. We demonstrate that the in-plane excitonic states exhibit splitting and orthogonally oriented dipoles for all confinement regimes. The evolution of the exciton states in an external magnetic field provides further insights into the g-factors and diamagnetic coefficients. With increasing n, we observe a gradual evolution of the excitonic parameters characteristic of a 2D to three-dimensional transition. Our results provide valuable information concerning the evolution of the optoelectronic properties of 2D perovskites with the changing confinement strength.
</summary>
<dc:date>2024-02-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Persistent enhancement of exciton diffusivity in CsPbBr3 nanocrystal solids</title>
<link href="https://hdl.handle.net/1721.1/164753" rel="alternate"/>
<author>
<name>Shcherbakov-Wu, Wenbi</name>
</author>
<author>
<name>Saris, Seryio</name>
</author>
<author>
<name>Sheehan, Thomas John</name>
</author>
<author>
<name>Wong, Narumi Nagaya</name>
</author>
<author>
<name>Powers, Eric R</name>
</author>
<author>
<name>Krieg, Franziska</name>
</author>
<author>
<name>Kovalenko, Maksym V</name>
</author>
<author>
<name>Willard, Adam P</name>
</author>
<author>
<name>Tisdale, William A</name>
</author>
<id>https://hdl.handle.net/1721.1/164753</id>
<updated>2026-04-14T03:38:35Z</updated>
<published>2024-02-21T00:00:00Z</published>
<summary type="text">Persistent enhancement of exciton diffusivity in CsPbBr3 nanocrystal solids
Shcherbakov-Wu, Wenbi; Saris, Seryio; Sheehan, Thomas John; Wong, Narumi Nagaya; Powers, Eric R; Krieg, Franziska; Kovalenko, Maksym V; Willard, Adam P; Tisdale, William A
In semiconductors, exciton or charge carrier diffusivity is typically described as an inherent material property. Here, we show that the transport of excitons among CsPbBr3 perovskite nanocrystals (NCs) depends markedly on how recently those NCs were occupied by a previous exciton. Using transient photoluminescence microscopy, we observe a striking dependence of the apparent exciton diffusivity on excitation laser power that does not arise from nonlinear exciton-exciton interactions or thermal heating. We interpret our observations with a model in which excitons cause NCs to transition to a long-lived metastable configuration that markedly increases exciton transport. The exciton diffusivity observed here (&gt;0.15 square centimeters per second) is considerably higher than that observed in other NC systems, revealing unusually strong excitonic coupling between NCs. The finding of a persistent enhancement in excitonic coupling may help explain other photophysical behaviors observed in CsPbBr3 NCs, such as superfluorescence, and inform the design of optoelectronic devices.
</summary>
<dc:date>2024-02-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>All-Perovskite Multicomponent Nanocrystal Superlattices</title>
<link href="https://hdl.handle.net/1721.1/164752" rel="alternate"/>
<author>
<name>Sekh, Taras V</name>
</author>
<author>
<name>Cherniukh, Ihor</name>
</author>
<author>
<name>Kobiyama, Etsuki</name>
</author>
<author>
<name>Sheehan, Thomas J</name>
</author>
<author>
<name>Manoli, Andreas</name>
</author>
<author>
<name>Zhu, Chenglian</name>
</author>
<author>
<name>Athanasiou, Modestos</name>
</author>
<author>
<name>Sergides, Marios</name>
</author>
<author>
<name>Ortikova, Oleksandra</name>
</author>
<author>
<name>Rossell, Marta D</name>
</author>
<author>
<name>Bertolotti, Federica</name>
</author>
<author>
<name>Guagliardi, Antonietta</name>
</author>
<author>
<name>Masciocchi, Norberto</name>
</author>
<author>
<name>Erni, Rolf</name>
</author>
<author>
<name>Othonos, Andreas</name>
</author>
<author>
<name>Itskos, Grigorios</name>
</author>
<author>
<name>Tisdale, William A</name>
</author>
<author>
<name>Stöferle, Thilo</name>
</author>
<author>
<name>Rainò, Gabriele</name>
</author>
<author>
<name>Bodnarchuk, Maryna I</name>
</author>
<author>
<name>Kovalenko, Maksym V</name>
</author>
<id>https://hdl.handle.net/1721.1/164752</id>
<updated>2026-04-14T03:38:33Z</updated>
<published>2024-03-06T00:00:00Z</published>
<summary type="text">All-Perovskite Multicomponent Nanocrystal Superlattices
Sekh, Taras V; Cherniukh, Ihor; Kobiyama, Etsuki; Sheehan, Thomas J; Manoli, Andreas; Zhu, Chenglian; Athanasiou, Modestos; Sergides, Marios; Ortikova, Oleksandra; Rossell, Marta D; Bertolotti, Federica; Guagliardi, Antonietta; Masciocchi, Norberto; Erni, Rolf; Othonos, Andreas; Itskos, Grigorios; Tisdale, William A; Stöferle, Thilo; Rainò, Gabriele; Bodnarchuk, Maryna I; Kovalenko, Maksym V
Nanocrystal superlattices (NC SLs) have long been sought as promising metamaterials, with nanoscale-engineered properties arising from collective and synergistic effects among the constituent building blocks. Lead halide perovskite (LHP) NCs come across as outstanding candidates for SL design, as they demonstrate collective light emission, known as superfluorescence, in single- and multicomponent SLs. Thus far, LHP NCs have only been assembled in single-component SLs or coassembled with dielectric NC building blocks acting solely as spacers between luminescent NCs. Here, we report the formation of multicomponent LHP NC-only SLs, i.e., using only CsPbBr3 NCs of different sizes as building blocks. The structural diversity of the obtained SLs encompasses the ABO6, ABO3, and NaCl structure types, all of which contain orientationally and positionally locked NCs. For the selected model system, the ABO6-type SL, we observed efficient NC coupling and Förster-like energy transfer from strongly confined 5.3 nm CsPbBr3 NCs to weakly confined 17.6 nm CsPbBr3 NCs, along with characteristic superfluorescence features at cryogenic temperatures. Spatiotemporal exciton dynamics measurements reveal that binary SLs exhibit enhanced exciton diffusivity compared to single-component NC assemblies across the entire temperature range (from 5 to 298 K). The observed coherent and incoherent NC coupling and controllable excitonic transport within the solid NC SLs hold promise for applications in quantum optoelectronic devices.
</summary>
<dc:date>2024-03-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Electrical manipulation of dissipation in microwave photon–magnon hybrid system through the spin Hall effect</title>
<link href="https://hdl.handle.net/1721.1/164751" rel="alternate"/>
<author>
<name>Hou, Justin T</name>
</author>
<author>
<name>Chou, Chung-Tao</name>
</author>
<author>
<name>Han, Jiahao</name>
</author>
<author>
<name>Fan, Yabin</name>
</author>
<author>
<name>Liu, Luqiao</name>
</author>
<id>https://hdl.handle.net/1721.1/164751</id>
<updated>2026-04-14T03:39:09Z</updated>
<published>2024-02-12T00:00:00Z</published>
<summary type="text">Electrical manipulation of dissipation in microwave photon–magnon hybrid system through the spin Hall effect
Hou, Justin T; Chou, Chung-Tao; Han, Jiahao; Fan, Yabin; Liu, Luqiao
Hybrid dynamic systems combine advantages from different subsystems for realizing information processing tasks in both classical and quantum domains. However, the lack of controlling knobs in tuning system parameters becomes a severe challenge in developing scalable, versatile hybrid systems for useful applications. Here, we report an on-chip microwave photon–magnon hybrid system where the dissipation rates and the coupling cooperativity can be electrically influenced by the spin Hall effect. Through magnon–photon coupling, the linewidths of the resonator photon mode and the hybridized magnon polariton modes are effectively changed by the spin injection into the magnetic wires from an applied direct current, which exhibit different trends in samples with low and high coupling strengths. Moreover, the linewidth modification by the spin Hall effect shows strong dependence on the detuning of the two subsystems, in contrast to the classical behavior of a standalone magnonic device. Our results point to a direction of realizing tunable, on-chip, scalable magnon-based hybrid dynamic systems, where spintronic effects provide useful control mechanisms.
</summary>
<dc:date>2024-02-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Human Factors Observations in Flightcrew Response to System Failure Events in Transport Category Aircraft from 2000 to 2024</title>
<link href="https://hdl.handle.net/1721.1/164750" rel="alternate"/>
<author>
<name>Perez Gago, Cecilia</name>
</author>
<author>
<name>Hansman, R. John</name>
</author>
<id>https://hdl.handle.net/1721.1/164750</id>
<updated>2026-02-06T03:00:48Z</updated>
<published>2026-02-05T00:00:00Z</published>
<summary type="text">Human Factors Observations in Flightcrew Response to System Failure Events in Transport Category Aircraft from 2000 to 2024
Perez Gago, Cecilia; Hansman, R. John
</summary>
<dc:date>2026-02-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>When Will (Game) Wars End?</title>
<link href="https://hdl.handle.net/1721.1/164749" rel="alternate"/>
<author>
<name>Bhatia, Manan</name>
</author>
<author>
<name>Chin, Byron</name>
</author>
<author>
<name>Mani, Nitya</name>
</author>
<author>
<name>Mossel, Elchanan</name>
</author>
<id>https://hdl.handle.net/1721.1/164749</id>
<updated>2026-04-14T03:38:36Z</updated>
<published>2026-01-02T00:00:00Z</published>
<summary type="text">When Will (Game) Wars End?
Bhatia, Manan; Chin, Byron; Mani, Nitya; Mossel, Elchanan
We study several variants of the classical card game war. As anyone who has played this game knows, the game can take some time to terminate, but it usually does. Here, we analyze a number of asymptotic variants of the game, where the number of cards is n, and show that all have an expected termination time of order &#119899;2. This is the same expected termination time as the game where at each turn a fair coin toss decides which player wins a card, known as Gambler’s Ruin and was studied by Blaise Pascal, Pierre de Fermat and others in the seventeenth century.
</summary>
<dc:date>2026-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Semiconductor-free, monolithically 3D-printed logic gates and resettable fuses</title>
<link href="https://hdl.handle.net/1721.1/164748" rel="alternate"/>
<author>
<name>Cañada, Jorge</name>
</author>
<author>
<name>Velásquez-García, Luis Fernando</name>
</author>
<id>https://hdl.handle.net/1721.1/164748</id>
<updated>2026-04-14T03:38:39Z</updated>
<published>2024-09-21T00:00:00Z</published>
<summary type="text">Semiconductor-free, monolithically 3D-printed logic gates and resettable fuses
Cañada, Jorge; Velásquez-García, Luis Fernando
Additive manufacturing has the potential to enable the inexpensive, single-step fabrication of fully functional electromechanical devices. However, while the 3D printing of mechanical parts and passive electrical components is well developed, the fabrication of fully 3D-printed active electronics, which are the cornerstone of intelligent devices, remains a challenge. Existing examples of 3D-printed active electronics show potential but lack integrability and accessibility. This work reports the first active electronics fully 3D-printed via material extrusion, i.e. one of the most accessible and versatile additive manufacturing processes. The technology is proof-of-concept demonstrated through the implementation of the first fully 3D-printed, semiconductor-free, solid-state logic gates, and the first fully 3D-printed resettable fuses. The devices take advantage of a positive temperature coefficient phenomenon found to affect narrow traces of 3D-printed copper-reinforced, polylactic acid. Although the reported devices don’t perform competitively against semiconductor-enabled integrated circuits, the customisability and accessibility intrinsic to material extrusion additive manufacturing make this technology promisingly disruptive. This work serves as a steppingstone for the semiconductor-free democratisation of electronic device fabrication and is of immediate relevance for the manufacture of custom, intelligent devices far from traditional manufacturing centres.
</summary>
<dc:date>2024-09-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rapid large-scale building damage level classification after earthquakes using deep learning with Lidar and satellite optical data</title>
<link href="https://hdl.handle.net/1721.1/164747" rel="alternate"/>
<author>
<name>Liu, Chang</name>
</author>
<author>
<name>Ge, Linlin</name>
</author>
<author>
<name>Bai, Ting</name>
</author>
<id>https://hdl.handle.net/1721.1/164747</id>
<updated>2026-04-14T03:39:10Z</updated>
<published>2024-12-31T00:00:00Z</published>
<summary type="text">Rapid large-scale building damage level classification after earthquakes using deep learning with Lidar and satellite optical data
Liu, Chang; Ge, Linlin; Bai, Ting
In post-earthquake scenarios, the swift assessment of building damage levels is pivotal for efficient emergency response and recovery planning. Nevertheless, conventional in-situ damage evaluations consume time. Current satellite-based deep learning methods save time but often lack detail, usually classifying damage as either collapsed or intact. This two-level information is not enough for rescue or recovery planning. Light Detection and Ranging (Lidar)-based deep learning methods, which provide three-dimensional (3D) information, could address this issue of damage details. Therefore, this paper proposes a deep learning-based building damage level classification method using both Lidar and satellite data. The proposed method classifies damage into four levels, including no/minor damage, partially collapsed, totally collapsed, and story failure. The developed network builds upon RandLA-Net, incorporating surface normal vectors to enhance accuracy. A colourised Lidar dataset was created for the network. The network underscores the advantage of incorporating surface normal information. A framework is also proposed based on the damage level outcomes of the developed network, which aids in emergency response efforts. Consequently, this paper demonstrates the practical utility of deep learning networks in rapidly assessing detailed building damage levels after earthquakes. Its practical contribution is guiding decision-making during the critical phases of post-earthquake response and recovery.
</summary>
<dc:date>2024-12-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cortical somatostatin innervation follows a unique experience-independent developmental trajectory</title>
<link href="https://hdl.handle.net/1721.1/164746" rel="alternate"/>
<author>
<name>Boivin, Josiah R</name>
</author>
<author>
<name>Schmerl, Bettina</name>
</author>
<author>
<name>Martin, Kendyll B</name>
</author>
<author>
<name>Lee, Chia-Fang</name>
</author>
<author>
<name>Nedivi, Elly</name>
</author>
<id>https://hdl.handle.net/1721.1/164746</id>
<updated>2026-04-14T03:38:32Z</updated>
<published>2026-01-13T00:00:00Z</published>
<summary type="text">Cortical somatostatin innervation follows a unique experience-independent developmental trajectory
Boivin, Josiah R; Schmerl, Bettina; Martin, Kendyll B; Lee, Chia-Fang; Nedivi, Elly
&lt;jats:p&gt;Despite the critical role of inhibition in regulating developmental plasticity, there are significant gaps in our understanding of inhibitory synapse development, particularly for the vast majority of inhibitory synapses that reside on dendrites. Dendritic inhibitory synapses, canonically arising from somatostatin (SST)-expressing neurons, are challenging to detect electrophysiologically and difficult to visualize without a molecular tag. Here, we integrate a genetic synapse labeling strategy with epitope-preserving magnified analysis of proteome (eMAP), a combination of tissue expansion and clearing, to reveal the development of SST innervation in the primary visual cortex of male and female mice. Unlike excitatory innervation, which follows a deep to shallow progression and undergoes pruning, we find that SST bouton formation occurs simultaneously across all cortical layers and is not subject to a period of net pruning. SST bouton and synapse formation occur most dramatically in the days following eye opening and during the opening of the critical period for ocular dominance plasticity. Yet, despite a coincidence with these visual milestones, neither SST bouton nor synapse formation depend on visual experience. This is in contrast to excitatory and non-SST inhibitory synapses, whose development has been shown to depend heavily on visual experience. Thus, SST cortical innervation follows a unique developmental trajectory that is independent of sensory experience and is optimally timed to regulate processes that are fundamental to cortical circuit maturation.&lt;/jats:p&gt;&#13;
                  &lt;jats:p&gt;&#13;
                    &lt;jats:bold&gt;Significance statement&lt;/jats:bold&gt;&#13;
                    During development, neurons form extensive synaptic connections while maintaining a delicate balance of excitation and inhibition. It is critical to understand how different subpopulations of synapses form during development, because perturbations in this precisely coordinated process can cause neurodevelopmental disorders. Here, we reveal at unprecedented resolution the development of cortical inhibitory innervation from somatostatin-expressing neurons, which canonically target dendrites. We show that somatostatin neurons follow different rules than other cell types during development, and somatostatin innervation is well-timed to contribute to developmental processes that are central to healthy cortical function. Our results provide new insights on how somatostatin neurons, a critically influential cell type, integrate into cortical circuitry during development.&#13;
                  &lt;/jats:p&gt;
</summary>
<dc:date>2026-01-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Neruda through copper-coloured glasses: the role of place attachment in the embeddedness of Chilean entrepreneurship</title>
<link href="https://hdl.handle.net/1721.1/164745" rel="alternate"/>
<author>
<name>Burke, M. Kathleen</name>
</author>
<author>
<name>Conley, Mark A.</name>
</author>
<author>
<name>Jack, Sarah L.</name>
</author>
<id>https://hdl.handle.net/1721.1/164745</id>
<updated>2026-04-14T03:38:38Z</updated>
<published>2025-01-11T00:00:00Z</published>
<summary type="text">Neruda through copper-coloured glasses: the role of place attachment in the embeddedness of Chilean entrepreneurship
Burke, M. Kathleen; Conley, Mark A.; Jack, Sarah L.
Despite scholarly interest in how emotional and instrumental place attachments motivate entrepreneurship, the influences on embeddedness remain underexplored. Building on the notion that entrepreneurship becomes embedded in a locality, we argue that this process is packed with place-based interpretations of the material and imagined reality. Engaging with the empirical setting of Chile, the world’s largest copper producer, we embark on a study examining the interactions between the place attachment, embeddedness and natural resource-based entrepreneurship. We uncover these interactions through analysing several works of poetry by Nobel laureate Pablo Neruda, which focus on the diverging place attachment styles between local and multinational agents. Through reflecting on the poems, we show how historical changes within the Chilean mining industry and broader societal changes are visible in Neruda’s imagery of place attachments, emotions and concerns for local conditions. We problematize embeddedness and entrepreneurship through illuminating the place attachments shaping local actors’ entrepreneurial imagination, thus contributing to knowledge about being embedded in natural resource-based entrepreneurship contexts. We provide new insights into how place attachment can evolve alongside different forms of embedded entrepreneurship.
</summary>
<dc:date>2025-01-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Human-centric manufacturing culture: a research study of MedTech manufacturers in Ireland</title>
<link href="https://hdl.handle.net/1721.1/164744" rel="alternate"/>
<author>
<name>Rhodes, Donna H</name>
</author>
<author>
<name>Cuddy, Sara</name>
</author>
<author>
<name>Jeffers, Malcolm</name>
</author>
<author>
<name>O’Rourke, Fiona</name>
</author>
<id>https://hdl.handle.net/1721.1/164744</id>
<updated>2026-04-14T03:39:07Z</updated>
<published>2025-12-31T00:00:00Z</published>
<summary type="text">Human-centric manufacturing culture: a research study of MedTech manufacturers in Ireland
Rhodes, Donna H; Cuddy, Sara; Jeffers, Malcolm; O’Rourke, Fiona
Digital manufacturing is rapidly evolving; however, this transformation is predominantly technology centric. Human-centric manufacturing shifts the paradigm for the digital manufacturing enterprise towards a human focus to realising its envisioned digital future. In that context, Digital Manufacturing Ireland (DMI), Ireland’s expert body for driving digital adoption across manufacturing, initiated a research study in collaboration with two research partners, MIT and IAAE, in support of this important focus for future manufacturing. This paper discusses results of the DMI 2023 human-Centric Manufacturing Culture Study, which engaged manufacturing leaders from 11 MedTech companies with major manufacturing sites in Ireland. Overall findings are discussed, with a focus on 12 emergent themes grouped in four categories: imperatives, values, strategies, and practices. Planned collaboration initiatives and anticipated future research are described. This paper also highlights considerations regarding new thinking needed by manufacturing leaders, along with recommendations as to what leaders can begin to do differently.
</summary>
<dc:date>2025-12-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Decomposition of Frobenius pushforwards of line bundles on wonderful compactifications</title>
<link href="https://hdl.handle.net/1721.1/164743" rel="alternate"/>
<author>
<name>Cai, Merrick</name>
</author>
<author>
<name>Krylov, Vasily</name>
</author>
<id>https://hdl.handle.net/1721.1/164743</id>
<updated>2026-04-14T03:38:31Z</updated>
<published>2025-01-28T00:00:00Z</published>
<summary type="text">Decomposition of Frobenius pushforwards of line bundles on wonderful compactifications
Cai, Merrick; Krylov, Vasily
De Concini and Procesi introduced varieties known as wonderful compactifications, which are smooth projective compactifications of semisimple adjoint groups G. We study the Frobenius pushforwards of line bundles on the wonderful compactifications, and in particular we decompose them into a direct sum of vector subbundles and explicitly describe the ranks. We are especially interested in when these subbundles are line bundles, and in the case of &#119866;=&#120239;&#120242;&#120235;&#119899;, we offer lower bounds on the multiplicities (as direct summands) for these line bundles.
</summary>
<dc:date>2025-01-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>BrepDiff: Single-Stage B-rep Diffusion Model</title>
<link href="https://hdl.handle.net/1721.1/164742" rel="alternate"/>
<author>
<name>Lee, Mingi</name>
</author>
<author>
<name>Zhang, Dongsu</name>
</author>
<author>
<name>Jambon, Cl?ment</name>
</author>
<author>
<name>Kim, Young Min</name>
</author>
<id>https://hdl.handle.net/1721.1/164742</id>
<updated>2026-04-14T03:20:22Z</updated>
<published>2025-07-27T00:00:00Z</published>
<summary type="text">BrepDiff: Single-Stage B-rep Diffusion Model
Lee, Mingi; Zhang, Dongsu; Jambon, Cl?ment; Kim, Young Min
The Boundary Representation (B-rep) is a widely used 3D model representation of most consumer products designed with CAD software. However, its highly irregular and sparse set of relationships poses significant challenges for designing a generative model tailored to B-reps. Existing approaches use multi-stage approaches to satisfy the complex constraints sequentially. As a result, the final geometry cannot incorporate user edits due to the non-deterministic dependencies between cascaded stages. In contrast, we propose BrepDiff, a single-stage diffusion model for B-rep generation. We present a masked UV grid representation consisting of structured point samples from faces, serving as input for a diffusion transformer. By introducing an asynchronous and shifted noise schedule, we improve the training signal, enabling the diffusion model to better capture the distribution of UV grids. The explicitness of our masked UV grid representation enables users to intuitively understand and freely design surface geometry without being constrained by topological validity. The interconnectivity can be derived from the face layout, which is later processed into a valid solid volume during post-processing. Our approach achieves performance on par with state-of-the-art cascaded models while offering complex and diverse manipulations of geometry and topology, such as shape completion, merging, and interpolation.
SIGGRAPH Conference Papers ’25, Vancouver, BC, Canada
</summary>
<dc:date>2025-07-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>SwiftSketch: A Diffusion Model for Image-to-Vector Sketch Generation</title>
<link href="https://hdl.handle.net/1721.1/164741" rel="alternate"/>
<author>
<name>Arar, Ellie</name>
</author>
<author>
<name>Frenkel, Yarden</name>
</author>
<author>
<name>Cohen-Or, Daniel</name>
</author>
<author>
<name>Shamir, Ariel</name>
</author>
<author>
<name>Vinker, Yael</name>
</author>
<id>https://hdl.handle.net/1721.1/164741</id>
<updated>2026-04-14T03:20:16Z</updated>
<published>2025-07-27T00:00:00Z</published>
<summary type="text">SwiftSketch: A Diffusion Model for Image-to-Vector Sketch Generation
Arar, Ellie; Frenkel, Yarden; Cohen-Or, Daniel; Shamir, Ariel; Vinker, Yael
Recent advancements in large vision-language models have enabled highly expressive and diverse vector sketch generation. However, state-of-the-art methods rely on a time-consuming optimization process involving repeated feedback from a pretrained model to determine stroke placement. Consequently, despite producing impressive sketches, these methods are limited in practical applications. In this work, we introduce SwiftSketch, a diffusion model for image-conditioned vector sketch generation that can produce high-quality sketches in less than a second. SwiftSketch operates by progressively denoising stroke control points sampled from a Gaussian distribution. Its transformer-decoder architecture is designed to effectively handle the discrete nature of vector representation and capture the inherent global dependencies between strokes. To train SwiftSketch, we construct a synthetic dataset of image-sketch pairs, addressing the limitations of existing sketch datasets, which are often created by non-artists and lack professional quality. For generating these synthetic sketches, we introduce ControlSketch, a method that enhances SDS-based techniques by incorporating precise spatial control through a depth-aware ControlNet. We demonstrate that SwiftSketch generalizes across diverse concepts, efficiently producing sketches that combine high fidelity with a natural and visually appealing style.
SIGGRAPH Conference Papers ’25, Vancouver, BC, Canada
</summary>
<dc:date>2025-07-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Lifting the Winding Number: Precise Discontinuities in Neural Fields for Physics Simulation</title>
<link href="https://hdl.handle.net/1721.1/164740" rel="alternate"/>
<author>
<name>Chang, Yue</name>
</author>
<author>
<name>Liu, Mengfei</name>
</author>
<author>
<name>Wang, Zhecheng</name>
</author>
<author>
<name>Chen, Peter Yichen</name>
</author>
<author>
<name>Grinspun, Eitan</name>
</author>
<id>https://hdl.handle.net/1721.1/164740</id>
<updated>2026-04-14T03:20:18Z</updated>
<published>2025-07-27T00:00:00Z</published>
<summary type="text">Lifting the Winding Number: Precise Discontinuities in Neural Fields for Physics Simulation
Chang, Yue; Liu, Mengfei; Wang, Zhecheng; Chen, Peter Yichen; Grinspun, Eitan
Cutting thin-walled deformable structures is common in daily life, but poses significant challenges for simulation due to the introduced spatial discontinuities. Traditional methods rely on mesh-based domain representations, which require frequent remeshing and refinement to accurately capture evolving discontinuities. These challenges are further compounded in reduced-space simulations, where the basis functions are inherently geometry- and mesh-dependent, making it difficult or even impossible for the basis to represent the diverse family of discontinuities introduced by cuts.&#13;
Recent advances in representing basis functions with neural fields offer a promising alternative, leveraging their discretization-agnostic nature to represent deformations across varying geometries. However, the inherent continuity of neural fields is an obstruction to generalization, particularly if discontinuities are encoded in neural network weights.&#13;
We present Wind Lifter, a novel neural representation designed to accurately model complex cuts in thin-walled deformable structures. Our approach constructs neural fields that reproduce discontinuities precisely at specified locations, without “baking in” the position of the cut line. To achieve this, we augment the input coordinates of the neural field with the generalized winding number of any given cut line, effectively lifting the input from two to three dimensions. Lifting allows the network to focus on the easier problem of learning a 3D everywhere-continuous volumetric field, while a corresponding restriction operator enables the final output field to precisely resolve strict discontinuities. Crucially, our approach does not embed the discontinuity in the neural network’s weights, opening avenues to generalization of cut placement.&#13;
Our method achieves real-time simulation speeds and supports dynamic updates to cut line geometry during the simulation. Moreover, the explicit representation of discontinuities makes our neural field intuitive to control and edit, offering a significant advantage over traditional neural fields, where discontinuities are embedded within the network’s weights, and enabling new applications that rely on general cut placement.
SIGGRAPH Conference Papers ’25, Vancouver, BC, Canada
</summary>
<dc:date>2025-07-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Making Concurrent Hardware Verification Sequential</title>
<link href="https://hdl.handle.net/1721.1/164739" rel="alternate"/>
<author>
<name>Bourgeat, Thomas</name>
</author>
<author>
<name>Liu, Jiazheng</name>
</author>
<author>
<name>Chlipala, Adam</name>
</author>
<author>
<name>Arvind</name>
</author>
<id>https://hdl.handle.net/1721.1/164739</id>
<updated>2026-04-14T03:38:44Z</updated>
<published>2025-06-13T00:00:00Z</published>
<summary type="text">Making Concurrent Hardware Verification Sequential
Bourgeat, Thomas; Liu, Jiazheng; Chlipala, Adam; Arvind
Compared to familiar hardware-description languages like Verilog, rule-based languages like Bluespec offer&#13;
opportunities to import modularity features from software programming. While Verilog modules are about&#13;
connecting wires between submodules, Bluespec modules resemble objects in object-oriented programming,&#13;
where interactions with a module occur only through calls to its methods. However, while software objects&#13;
can typically be characterized one method at a time, the concurrent nature of hardware makes it essential to&#13;
consider the repercussions of invoking multiple methods simultaneously. Prior formalizations of rule-based&#13;
languages conceptualized modules by describing their semantics considering arbitrary sets of simultaneous&#13;
method calls. This internalized concurrency significantly complicates correctness proofs. Rather than analyzing&#13;
methods one-at-a-time, as is done when verifying software object methods, validating the correctness of&#13;
rule-based modules necessitated simultaneous consideration of arbitrary subsets of method calls. The result&#13;
was a number of proof cases that grew exponentially in the size of the module&amp;#8217;s API.&#13;
In this work, we side-step the exponential blowup through a set of judicious language restrictions. We&#13;
introduce a new Bluespec-inspired formal language, Fjfj, that supports sequential characterization of modules,&#13;
while preserving the concurrent hardware nature of the language. We evaluated Fjfj by implementing it in&#13;
Coq, proving the key framework principle: the refinement theorem. We demonstrated Fjfj&amp;#8217;s expressivity via&#13;
implementation and verification of three examples: a pipelined processor, a parameterized crossbar, and a&#13;
network switch.
</summary>
<dc:date>2025-06-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Lilo: A Higher-Order, Relational Concurrent Separation Logic for Liveness</title>
<link href="https://hdl.handle.net/1721.1/164738" rel="alternate"/>
<author>
<name>Lee, Dongjae</name>
</author>
<author>
<name>Lee, Janggun</name>
</author>
<author>
<name>Yoon, Taeyoung</name>
</author>
<author>
<name>Cho, Minki</name>
</author>
<author>
<name>Kang, Jeehoon</name>
</author>
<author>
<name>Hur, Chung-Kil</name>
</author>
<id>https://hdl.handle.net/1721.1/164738</id>
<updated>2026-04-14T03:20:20Z</updated>
<published>2025-04-09T00:00:00Z</published>
<summary type="text">Lilo: A Higher-Order, Relational Concurrent Separation Logic for Liveness
Lee, Dongjae; Lee, Janggun; Yoon, Taeyoung; Cho, Minki; Kang, Jeehoon; Hur, Chung-Kil
Concurrent separation logic (CSL) has excelled in verifying safety properties across various applications, yet its application to liveness properties remains limited. While existing approaches like TaDA Live and Fair Operational Semantics (FOS) have made significant strides, they still face limitations. TaDA Live struggles to verify certain classes of programs, particularly concurrent objects with non-local linearization points, and lacks support for general liveness properties such as "good things happen infinitely often". On the other hand, FOS&amp;#8217;s scalability is hindered by the absence of thread modular reasoning principles and modular specifications.&#13;
&#13;
This paper introduces Lilo, a higher-order, relational CSL designed to overcome these limitations. Our core observation is that FOS helps us to maintain simple primitives for our logic, which enable us to explore design space with fewer restrictions. As a result, Lilo adapts various successful techniques from literature. It supports reasoning about non-terminating programs by supporting refinement proofs, and also provides Iris-style invariants and modular specifications to facilitate modular verification. To support higher-order reasoning without relying on step-indexing, we develop a technique called stratified propositions inspired by Nola. In particular, we develop novel abstractions for liveness reasoning that bring these techniques together in a uniform way. We show Lilo&amp;#8217;s scalability through case studies, including the first termination-guaranteeing modular verification of the elimination stack. Lilo and examples in this paper are mechanized in Coq.
</summary>
<dc:date>2025-04-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Stochastic Lazy Knowledge Compilation for Inference in Discrete Probabilistic Programs</title>
<link href="https://hdl.handle.net/1721.1/164737" rel="alternate"/>
<author>
<name>Bowers, Maddy</name>
</author>
<author>
<name>Lew, Alexander K.</name>
</author>
<author>
<name>Tenenbaum, Joshua B.</name>
</author>
<author>
<name>Solar-Lezama, Armando</name>
</author>
<author>
<name>Mansinghka, Vikash K.</name>
</author>
<id>https://hdl.handle.net/1721.1/164737</id>
<updated>2026-04-14T03:20:24Z</updated>
<published>2025-06-13T00:00:00Z</published>
<summary type="text">Stochastic Lazy Knowledge Compilation for Inference in Discrete Probabilistic Programs
Bowers, Maddy; Lew, Alexander K.; Tenenbaum, Joshua B.; Solar-Lezama, Armando; Mansinghka, Vikash K.
We present new techniques for exact and approximate inference in discrete probabilistic programs, based on two new ways of exploiting lazy evaluation. First, we show how knowledge compilation, a state-of-the art technique for exact inference in discrete probabilistic programs, can be made lazy, enabling asymptotic speed-ups. Second, we show how a probabilistic program&amp;#8217;s lazy semantics naturally give rise to a division of its random choices into subproblems, which can be solved in sequence by sequential Monte Carlo with locally-optimal proposals automatically computed via lazy knowledge compilation. We implement our approach in a new tool, Pluck, and evaluate its performance against state-of-the-art approaches to inference in discrete probabilistic languages. We find that on a suite of inference benchmarks, lazy knowledge compilation can be faster than state-of-the-art approaches, sometimes by orders of magnitude.
</summary>
<dc:date>2025-06-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Probabilistic Programming with Vectorized Programmable Inference</title>
<link href="https://hdl.handle.net/1721.1/164736" rel="alternate"/>
<author>
<name>Becker, McCoy R.</name>
</author>
<author>
<name>Huot, Mathieu</name>
</author>
<author>
<name>Matheos, George</name>
</author>
<author>
<name>Wang, Xiaoyan</name>
</author>
<author>
<name>Chung, Karen</name>
</author>
<author>
<name>Smith, Colin</name>
</author>
<author>
<name>Ritchie, Sam</name>
</author>
<author>
<name>Saurous, Rif A.</name>
</author>
<author>
<name>Lew, Alexander K.</name>
</author>
<author>
<name>Rinard, Martin C.</name>
</author>
<author>
<name>Mansinghka, Vikash K.</name>
</author>
<id>https://hdl.handle.net/1721.1/164736</id>
<updated>2026-04-14T03:38:27Z</updated>
<published>2026-01-08T00:00:00Z</published>
<summary type="text">Probabilistic Programming with Vectorized Programmable Inference
Becker, McCoy R.; Huot, Mathieu; Matheos, George; Wang, Xiaoyan; Chung, Karen; Smith, Colin; Ritchie, Sam; Saurous, Rif A.; Lew, Alexander K.; Rinard, Martin C.; Mansinghka, Vikash K.
We present GenJAX, a new language and compiler for vectorized programmable probabilistic inference.&#13;
GenJAX integrates the vectorizing map (vmap) operation from array programming frameworks such as JAX&#13;
into the programmable inference paradigm, enabling compositional&#13;
vectorization of features such as probabilistic program traces, stochastic branching&#13;
(for expressing mixture models), and programmable inference interfaces&#13;
for writing custom probabilistic inference algorithms.  &#13;
We formalize vectorization as a source-to-source program transformation on a core calculus for probabilistic programming ($\gen$), and&#13;
prove that it correctly vectorizes both modeling and inference operations.&#13;
We have implemented our approach in \href{https://github.com/probcomp/genjax}{the GenJAX language and compiler}, and have empirically evaluated this implementation on&#13;
several benchmarks and case studies. Our results show that our implementation&#13;
supports a wide and expressive set of programmable inference patterns and delivers&#13;
performance comparable to hand-optimized JAX code.
</summary>
<dc:date>2026-01-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Waste-Efficient Work Stealing</title>
<link href="https://hdl.handle.net/1721.1/164735" rel="alternate"/>
<author>
<name>Singer, Kyle</name>
</author>
<author>
<name>Agrawal, Kunal</name>
</author>
<author>
<name>Schardl, Tao B.</name>
</author>
<id>https://hdl.handle.net/1721.1/164735</id>
<updated>2026-04-14T03:38:26Z</updated>
<published>2026-01-28T00:00:00Z</published>
<summary type="text">Waste-Efficient Work Stealing
Singer, Kyle; Agrawal, Kunal; Schardl, Tao B.
Although randomized work stealing is effective at automatically load-balancing task-parallel programs, it can waste computational resources when scheduling programs that lack sufficient parallelism to use all available threads. For such programs, threads will waste cycles attempting to steal parallel tasks when none are available. This waste can reduce the machine’s efficiency by wasting computational resources and energy and needlessly burdening the operating system.&#13;
This paper introduces WEWS, a simple, practical, and provably efficient extension to randomized work stealing that mitigates waste. WEWS dynamically adjusts the number of active threads to reduce the waste of randomized work stealing. WEWS executes a parallel computation with the same asymptotic running time as traditional randomized work stealing while bounding the waste to O(min{PT∞, T1 + P2}) instructions. WEWS also follows the work-first principle to perform well in practice.&#13;
WEWS requires no special support from the operating system or hardware, which simplifies its implementation. We implemented WEWS within the OpenCilk runtime system and compared it to other common waste-mitigation strategies. Across 10 parallel benchmarks, we find that WEWS has minimal impact on parallel running times while, on programs with limited parallelism, substantially reducing waste.
PPoPP ’26, Sydney, NSW, Australia
</summary>
<dc:date>2026-01-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>UniTe: A Universal Tensor Abstraction for Capturing Spatial Relationships</title>
<link href="https://hdl.handle.net/1721.1/164734" rel="alternate"/>
<author>
<name>Ray, Jessica</name>
</author>
<author>
<name>Collin, Teodoro</name>
</author>
<author>
<name>Sze, Vivienne</name>
</author>
<author>
<name>Reuther, Albert</name>
</author>
<author>
<name>Amarasinghe, Saman</name>
</author>
<id>https://hdl.handle.net/1721.1/164734</id>
<updated>2026-04-14T03:38:28Z</updated>
<summary type="text">UniTe: A Universal Tensor Abstraction for Capturing Spatial Relationships
Ray, Jessica; Collin, Teodoro; Sze, Vivienne; Reuther, Albert; Amarasinghe, Saman
Tensors are an integral part of numerous domains, and while significant effort has been put into the design of tensor data structures in isolation, little attention has been paid to the relationships that exist across tensors and how this affects their representation and use. In this paper, we focus on spatial relationships across tensors in a program, where such tensors are defined relative to a common reference coordinate system. These relationships are complicated by the fact that the tensors may differ in their representations, such as having variations in their axes, spacings, origins, and overall shape. Due to the lack of existing abstractions and language support for these types of tensor semantics, users are currently forced to manually perform the bookkeeping necessary to account for these varying relationships and representations. Unfortunately, we cannot rely on a simple library to capture these relationships, as computations on these types of tensors often happen at the innermost levels of programs; we find that the overheads associated with an unoptimized implementation quickly accumulate, leading to performance up to nearly 65x slower than a reference C implementation on a series of image and video compression benchmarks.     In this paper, we introduce the novel UniTe abstraction, which captures spatial relationships across all such tensors in a program. We also introduce two domain-specific languages and optimizing compilers, CoLa for Python and SHiM for C/C++, built off of UniTe. Both CoLa and SHiM provide users an intuitive set of tensor primitives based on spatial relationships, hiding the complexity that goes into maintaining the tensors and computing accesses across them. In addition, we discuss the optimizations necessary to remove the associated abstraction overhead, and describe their implementations. On the benchmarks, we show that both CoLa and SHiM successfully remove the overheads, achieving performance parity with existing C implementations.
</summary>
</entry>
<entry>
<title>Triplet Exciton Sensitization of Silicon Mediated by Defect States in Hafnium Oxynitride</title>
<link href="https://hdl.handle.net/1721.1/164733" rel="alternate"/>
<author>
<name>Nagaya, Narumi</name>
</author>
<author>
<name>Alexiu, Alexandra</name>
</author>
<author>
<name>Perkinson, Collin F</name>
</author>
<author>
<name>Nix, Oliver M</name>
</author>
<author>
<name>Koh, Dooyong</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<author>
<name>Tisdale, William A</name>
</author>
<author>
<name>Van Voorhis, Troy</name>
</author>
<author>
<name>Baldo, Marc A</name>
</author>
<id>https://hdl.handle.net/1721.1/164733</id>
<updated>2026-04-14T03:38:48Z</updated>
<published>2024-12-23T00:00:00Z</published>
<summary type="text">Triplet Exciton Sensitization of Silicon Mediated by Defect States in Hafnium Oxynitride
Nagaya, Narumi; Alexiu, Alexandra; Perkinson, Collin F; Nix, Oliver M; Koh, Dooyong; Bawendi, Moungi G; Tisdale, William A; Van Voorhis, Troy; Baldo, Marc A
Singlet exciton fission has the potential to increase the efficiency of crystalline silicon solar cells beyond the conventional single junction limit. Perhaps the largest obstacle to achieving this enhancement is uncertainty about energy coupling mechanisms at the interfaces between silicon and exciton fission materials such as tetracene. Here, the previously reported silicon‐hafnium oxynitride‐tetracene structure is studied and a combination of magnetic‐field‐dependent silicon photoluminescence measurements and density functional theory calculations is used to probe the influence of the interlayer composition on the triplet transfer process across the hafnium oxynitride interlayer. It is found that hafnium oxide interlayers do not show triplet exciton sensitization of silicon, and that nitrogen content in hafnium oxynitride layers is correlated with enhanced sensitization. Calculation results reveal that defects in hafnium oxynitride interlayers with higher nitrogen content introduce states close to the band‐edge of silicon, which can mediate the triplet exciton transfer process. Some defects introduce additional deleterious mid‐gap states, which may explain observed silicon photoluminescence quenching. These results show that band‐edge states can mediate the triplet exciton transfer process, potentially through a sequential charge transfer mechanism.
</summary>
<dc:date>2024-12-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Layered Metal–Organic Chalcogenides: 2D Optoelectronics in 3D Self-Assembled Semiconductors</title>
<link href="https://hdl.handle.net/1721.1/164732" rel="alternate"/>
<author>
<name>Paritmongkol, Watcharaphol</name>
</author>
<author>
<name>Feng, Zhifu</name>
</author>
<author>
<name>Refaely-Abramson, Sivan</name>
</author>
<author>
<name>Tisdale, William A</name>
</author>
<author>
<name>Kastl, Christoph</name>
</author>
<author>
<name>Maserati, Lorenzo</name>
</author>
<id>https://hdl.handle.net/1721.1/164732</id>
<updated>2026-04-14T03:39:01Z</updated>
<published>2025-03-26T00:00:00Z</published>
<summary type="text">Layered Metal–Organic Chalcogenides: 2D Optoelectronics in 3D Self-Assembled Semiconductors
Paritmongkol, Watcharaphol; Feng, Zhifu; Refaely-Abramson, Sivan; Tisdale, William A; Kastl, Christoph; Maserati, Lorenzo
Molecular self-assembly offers an effective and scalable way to design nanostructured materials with tunable optoelectronic properties. In the past 30 years, organic chemistry has delivered a plethora of metal-organic structures based on the combination of organic groups, chalcogens, and a broad range of metals. Among these, several layered metal-organic chalcogenides (MOCs)─including "mithrene" (AgSePh)─recently emerged as interesting platforms to host 2D physics embedded in 3D crystals. Their combination of broad tunability, easy processability, and promising optoelectronic performance is driving a renewed interest in the more general material group of "low-dimensional" hybrids. In addition, the covalent MOC lattice provides higher stability compared with polar materials in operating devices. Here, we provide a perspective on the rise of 2D MOCs in terms of their synthesis approaches, 2D quantum confined exciton physics, and potential future applications in UV and X-ray photodetection, chemical sensors, and electrocatalysis.
</summary>
<dc:date>2025-03-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Exciton fission enhanced silicon solar cell</title>
<link href="https://hdl.handle.net/1721.1/164731" rel="alternate"/>
<author>
<name>Nagaya, Narumi</name>
</author>
<author>
<name>Lee, Kangmin</name>
</author>
<author>
<name>Perkinson, Collin F</name>
</author>
<author>
<name>Li, Aaron</name>
</author>
<author>
<name>Lee, Youri</name>
</author>
<author>
<name>Zhong, Xinjue</name>
</author>
<author>
<name>Lee, Sujin</name>
</author>
<author>
<name>Weisburn, Leah P</name>
</author>
<author>
<name>Wang, Janet Z</name>
</author>
<author>
<name>Baikie, Tomi K</name>
</author>
<author>
<name>Bawendi, Moungi G</name>
</author>
<author>
<name>Van Voorhis, Troy</name>
</author>
<author>
<name>Tisdale, William A</name>
</author>
<author>
<name>Kahn, Antoine</name>
</author>
<author>
<name>Seo, Kwanyong</name>
</author>
<author>
<name>Baldo, Marc A</name>
</author>
<id>https://hdl.handle.net/1721.1/164731</id>
<updated>2026-04-14T03:38:50Z</updated>
<published>2025-07-16T00:00:00Z</published>
<summary type="text">Exciton fission enhanced silicon solar cell
Nagaya, Narumi; Lee, Kangmin; Perkinson, Collin F; Li, Aaron; Lee, Youri; Zhong, Xinjue; Lee, Sujin; Weisburn, Leah P; Wang, Janet Z; Baikie, Tomi K; Bawendi, Moungi G; Van Voorhis, Troy; Tisdale, William A; Kahn, Antoine; Seo, Kwanyong; Baldo, Marc A
While silicon solar cells dominate global photovoltaic energy production, their continued improvement is hindered by the single-junction limit. One potential solution is to use molecular singlet exciton fission to generate two electrons from each absorbed high-energy photon. We demonstrate that the long-standing challenge of coupling molecular excited states to silicon solar cells can be overcome using sequential charge transfer. Combining zinc phthalocyanine, aluminum oxide, and a shallow junction crystalline silicon microwire solar cell, the peak charge generation efficiency per photon absorbed in tetracene is (138% ± 6%), comfortably surpassing the quantum efficiency limit for conventional silicon solar cells and establishing a new, scalable approach to low-cost, high-efficiency photovoltaics.
</summary>
<dc:date>2025-07-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>1D Silver Organochalcogenide Semiconductors: Color Tunable Luminescence, Polarized Emission, and Long-Range Exciton Diffusion</title>
<link href="https://hdl.handle.net/1721.1/164730" rel="alternate"/>
<author>
<name>Sakurada, Tomoaki</name>
</author>
<author>
<name>Pathoor, Nithin</name>
</author>
<author>
<name>Matsumoto, Takuma</name>
</author>
<author>
<name>Khamlue, Rattapon</name>
</author>
<author>
<name>Chatsiri, Petcharaphorn</name>
</author>
<author>
<name>Valenta, Jan</name>
</author>
<author>
<name>Kawamoto, Tadashi</name>
</author>
<author>
<name>Omagari, Shun</name>
</author>
<author>
<name>Tisdale, William A</name>
</author>
<author>
<name>Paritmongkol, Watcharaphol</name>
</author>
<author>
<name>Cho, Yeongsu</name>
</author>
<author>
<name>Vacha, Martin</name>
</author>
<id>https://hdl.handle.net/1721.1/164730</id>
<updated>2026-04-14T03:38:56Z</updated>
<published>2025-10-14T00:00:00Z</published>
<summary type="text">1D Silver Organochalcogenide Semiconductors: Color Tunable Luminescence, Polarized Emission, and Long-Range Exciton Diffusion
Sakurada, Tomoaki; Pathoor, Nithin; Matsumoto, Takuma; Khamlue, Rattapon; Chatsiri, Petcharaphorn; Valenta, Jan; Kawamoto, Tadashi; Omagari, Shun; Tisdale, William A; Paritmongkol, Watcharaphol; Cho, Yeongsu; Vacha, Martin
Metal organochalcogenides (MOCs) represent a promising class of organic-inorganic hybrid semiconductors with unique light-matter interactions. Their hybrid nature enables extensive structural and optoelectronic tunability via ligand engineering. In this study, we systematically modulated the electronic properties of ligands using Cl and Me functional groups, achieving precise control over the optoelectronic properties of Ag-based MOCs. Structural analysis revealed that these MOCs adopt a one-dimensional (1D) chain structure with organic ligands surrounding a Ag-chalcogen core. Density functional theory (DFT) calculations demonstrated that MOCs exhibit characteristics of 1D semiconductors with strongly dispersive conduction and valence bands aligned along the crystal rod directions. Experimentally, the MOCs displayed bright luminescence, with peaks centered between 560 and 690 nm. The substitution of Cl with Me groups in the benzene ligands induced a red shift in both absorption and photoluminescence, corroborated by experimental and theoretical analyses. Further optical measurements indicated that the emission from the MOCs is strongly polarized along the chain directions. Notably, Se-based MOCs exhibited enhanced exciton diffusivity along the chain axis with a diffusion length of 130 nm, which is among the highest reported for covalent systems. The observed trend in carrier diffusivity among individual compounds is attributed to differences in the effective masses of the carriers, as determined by DFT calculations. Our findings offer valuable insights into the systematic structural and property tuning of hybrid semiconductors and highlight the unique characteristics of the 1D MOC family.
</summary>
<dc:date>2025-10-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Excitonic Anisotropy in Single‐Crystalline 2D Silver Phenylchalcogenides</title>
<link href="https://hdl.handle.net/1721.1/164729" rel="alternate"/>
<author>
<name>Lee, Woo Seok</name>
</author>
<author>
<name>Cho, Yeongsu</name>
</author>
<author>
<name>Posmyk, Katarzyna</name>
</author>
<author>
<name>Peksa, Paulina</name>
</author>
<author>
<name>Dyksik, Mateusz</name>
</author>
<author>
<name>Samulewicz, Nicholas</name>
</author>
<author>
<name>Plochocka, Paulina</name>
</author>
<author>
<name>Baranowski, Michał</name>
</author>
<author>
<name>Kulik, Heather J</name>
</author>
<author>
<name>Tisdale, William A</name>
</author>
<id>https://hdl.handle.net/1721.1/164729</id>
<updated>2026-04-14T03:38:55Z</updated>
<published>2025-10-30T00:00:00Z</published>
<summary type="text">Excitonic Anisotropy in Single‐Crystalline 2D Silver Phenylchalcogenides
Lee, Woo Seok; Cho, Yeongsu; Posmyk, Katarzyna; Peksa, Paulina; Dyksik, Mateusz; Samulewicz, Nicholas; Plochocka, Paulina; Baranowski, Michał; Kulik, Heather J; Tisdale, William A
2D materials exhibiting in‐plane anisotropy enable new applications in directional energy transport and polarized optical response. Silver phenylchalcogenides (AgEPh) – including mithrene (AgSePh), tethrene (AgTePh), and thiorene (AgSPh) – represent an exciting new addition to this family, with optical response spanning the visible to near‐UV. Here, excitonic anisotropy is predicted and characterized in this family of materials using a combination of ab initio theory and optical micro‐spectroscopy of single‐crystalline flakes. Using density functional theory and GW with the Bethe–Salpeter equation calculations, it is revealed that all AgEPh compounds exhibit anisotropic electronic band structure and host multiple delocalized excitons with in‐plane anisotropy. Room‐temperature polarization‐resolved optical micro‐spectroscopy shows that orthogonally polarized excitons with similar energy lead to nearly isotropic absorption in AgSPh, whereas energy separation between excitonic resonances in AgSePh and AgTePh leads to strong absorption and emission anisotropy. Cryogenic reflectance micro‐spectroscopy further reveals exciton fine structure in AgSePh, reconciling the discrepancies between room‐temperature experiments and theoretical predictions. Finally, it is demonstrated that the optical response of thicker AgEPh crystals is influenced by photonic effects arising from finite crystal size. Overall, this work advances the understanding of the relationship between anisotropic structure, composition, and excitonic properties in AgEPh, providing a foundation for technological integration.
</summary>
<dc:date>2025-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Revolutionize cold chain: an AI/ML driven approach to overcome capacity shortages</title>
<link href="https://hdl.handle.net/1721.1/164728" rel="alternate"/>
<author>
<name>Jackson, Ilya</name>
</author>
<author>
<name>Namdar, Jafar</name>
</author>
<author>
<name>Saénz, Maria Jesús</name>
</author>
<author>
<name>Elmquist III, Richard Augustus</name>
</author>
<author>
<name>Dávila Novoa, Luis Rodrigo</name>
</author>
<id>https://hdl.handle.net/1721.1/164728</id>
<updated>2026-04-14T03:39:04Z</updated>
<published>2025-03-19T00:00:00Z</published>
<summary type="text">Revolutionize cold chain: an AI/ML driven approach to overcome capacity shortages
Jackson, Ilya; Namdar, Jafar; Saénz, Maria Jesús; Elmquist III, Richard Augustus; Dávila Novoa, Luis Rodrigo
This research investigates how Artificial Intelligence (AI) and Machine Learning (ML) forecasting methodologies can be leveraged for cold chain capacity planning, specifically utilising Prophet and Seasonal Autoregressive Integrated Moving Average parametrised through grid search. In collaboration with Americold, the world's second-largest refrigerated logistic service provider, the study explores the challenges and opportunities in applying AI/ML techniques to complex operations covering 385 customers and a capacity of 73,296 pallet positions. We train and test several AI/ML and traditional statistical models using extensive data for every customer over 3.5 years. Based on the results, MAPE of 5.28% was achieved on the whole site level, and SARIMA outperformed ML models in most cases. Next, we show that developing and applying a Customer Segmentation Matrix has enabled more accurate forecasting and planning across various customer segments, addressing the issue of forecasting inaccuracies. This approach effectively improves forecasting inaccuracies, underscoring the significance of tailoring AI/ML models for demand forecasting within the cold-chain industry. Ultimately, this research presents an AI-driven approach that transcends mere forecasting, offering a practical pathway to manage capacity in light of the constraints.
</summary>
<dc:date>2025-03-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Beyond binary group categorization: towards a dynamic view of human groups</title>
<link href="https://hdl.handle.net/1721.1/164727" rel="alternate"/>
<author>
<name>Kish Bar-On, Kati</name>
</author>
<id>https://hdl.handle.net/1721.1/164727</id>
<updated>2026-04-14T03:38:50Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">Beyond binary group categorization: towards a dynamic view of human groups
Kish Bar-On, Kati
Society is a composite of interacting people and groups. These groups play a significant role in maintaining social status, establishing group identity and social identity, and enforcing norms. As such, groups are essential for understanding human behavior. Nevertheless, the study of groups in everyday group life yields many diverse and sometimes contradicting theories of group behavior, and researchers tend to agree that we have yet to understand the emergence of groups out of aggregates of individuals. The current paper aims to shed new light on the convoluted interrelation between groups and individuals by focusing on individuals’ social identities and group categorization. It does so by exploring the dynamic nature of the self and its implications on identity and group membership, and introducing a framework recognizing the fluidity of groups and group categorization. Incorporating historical insights with contemporary theories, this paper argues for a flexible understanding of group dynamics that surpasses rigid in-group and out-group classifications, proposing instead that group affiliations exist along a continuum that reflects the ever-changing social landscape.
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reparative Urban Science: Challenging the Myth of Neutrality and Crafting Data-Driven Narratives</title>
<link href="https://hdl.handle.net/1721.1/164726" rel="alternate"/>
<author>
<name>So, Wonyoung</name>
</author>
<id>https://hdl.handle.net/1721.1/164726</id>
<updated>2026-04-14T03:38:53Z</updated>
<published>2024-05-26T00:00:00Z</published>
<summary type="text">Reparative Urban Science: Challenging the Myth of Neutrality and Crafting Data-Driven Narratives
So, Wonyoung
I offer how urban planning should approach technology within the context of systemic racism, advocating for a reparative approach to address the issues of urban technology perpetuating today’s racial inequality and hindering efforts to redress historical oppression. I identify three mechanisms – formalization, context removal and legitimization, and penalization and extraction – that illustrate how urban technology perpetuates historical inequalities, often penalizing marginalized groups under the pretext of neutrality and fairness. Then, I discuss methodologies of reparative urban science, aiming to use urban technology to challenge race-neutral ideologies and create data-driven narratives for reparations.
</summary>
<dc:date>2024-05-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>What determines EV architecture? An analysis of the most influential battery electric vehicle design decisions from market data</title>
<link href="https://hdl.handle.net/1721.1/164725" rel="alternate"/>
<author>
<name>Khan, Mumin</name>
</author>
<author>
<name>Cameron, Bruce</name>
</author>
<id>https://hdl.handle.net/1721.1/164725</id>
<updated>2026-04-14T03:38:52Z</updated>
<published>2025-08-12T00:00:00Z</published>
<summary type="text">What determines EV architecture? An analysis of the most influential battery electric vehicle design decisions from market data
Khan, Mumin; Cameron, Bruce
The penetration and variety of Battery Electric Vehicles (BEVs) in the automotive sector have been growing rapidly. While there is substantial research on hybrid ICE-battery vs. battery-only choices, little work has examined whether a dominant design for BEVs is emerging, as predicted by the innovation literature. This study provides a comprehensive exploration of BEV architectures, examining the influence of individual architectural decisions on vehicle performance and market prevalence. This study utilizes multivariate linear regression to analyze a curated dataset of global BEV models from 2022 and 2023, focusing on candidate architectural decisions such as battery cathode composition, battery voltage choice, number of motors, and drive layout. Our research aims to identify potential dominant designs by assessing their impact on performance metrics. The analysis then leverages statistical tools to evaluate the correlation between these architectural decisions and vehicle performance, using range as a primary indicator of consumer appeal. Findings from this research indicate significant variance in the adoption of specific BEV architectures, suggesting that the market has not yet consolidated down to a dominant design. We observe, however, that range is most strongly influenced by the architectural decisions for battery capacity, drive type, and motor type.
</summary>
<dc:date>2025-08-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Chemical and Chemical-Mechanical Polishing of Surface Roughness on L-PBF/GRCop-42 Cu-Cr-Nb Additive Manufactured 10-GHz RF Structures</title>
<link href="https://hdl.handle.net/1721.1/164724" rel="alternate"/>
<author>
<name>Seltzman, AH</name>
</author>
<author>
<name>Wukitch, SJ</name>
</author>
<id>https://hdl.handle.net/1721.1/164724</id>
<updated>2026-04-14T03:38:46Z</updated>
<published>2025-09-30T00:00:00Z</published>
<summary type="text">Chemical and Chemical-Mechanical Polishing of Surface Roughness on L-PBF/GRCop-42 Cu-Cr-Nb Additive Manufactured 10-GHz RF Structures
Seltzman, AH; Wukitch, SJ
Laser-based powder bed fusion (L-PBF) allows additive manufacture (AM) of lower hybrid current drive (LHCD) radio-frequency (RF) launchers from Glenn Research Copper, a Cr2Nb precipitation-hardened alloy (GRCop-42) in configurations unachievable with conventional machining. Rough surfaces in AM components increase RF losses and lead to arcing in high-power vacuum RF applications. Chemical polishing, chemical-mechanical polishing, or a combination of both were utilized to planarize the internal surfaces of RF structures, resulting in surface roughness as low as Ra = 0.2 µm. Refinement in polishing techniques now enables GRCop-42 alloys (4 at. % Cr, 2 at. % Nb) to achieve similar surface roughness to GRCop-84 (8 at. % Cr, 4 at. % Nb) and equivalent cavity losses to extruded oxygen-free copper waveguides at 10 GHz.
</summary>
<dc:date>2025-09-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Name of Moses in an Egyptian Context—A Hypothetical Etymology</title>
<link href="https://hdl.handle.net/1721.1/164723" rel="alternate"/>
<author>
<name>Adair, Aaron</name>
</author>
<id>https://hdl.handle.net/1721.1/164723</id>
<updated>2026-04-14T03:38:58Z</updated>
<published>2025-01-02T00:00:00Z</published>
<summary type="text">The Name of Moses in an Egyptian Context—A Hypothetical Etymology
Adair, Aaron
The etymological origins of the name “Moses” have been unclear, but an Egyptian candidate is the most likely hypothesis. In this article, a new proposal is given that finds the best candidate as the Demotic word, mšꜥ, but only in the late Persian period or later would it fit the Hebrew Mōše. Evidence from Greek orthography and testimony from Manetho provide a stronger basis for this proposal over prior candidates. However, this results in a Hellenistic-era inclusion of “Moses” into the Exodus narrative.
</summary>
<dc:date>2025-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Making Sense of Models: Connecting Science and Math Through Decoding and Modifying Computational Models</title>
<link href="https://hdl.handle.net/1721.1/164722" rel="alternate"/>
<author>
<name>Lee, Irene A.</name>
</author>
<author>
<name>Sagartz, Mary</name>
</author>
<author>
<name>Meyer, Patricia</name>
</author>
<author>
<name>Anderson, Emma</name>
</author>
<id>https://hdl.handle.net/1721.1/164722</id>
<updated>2026-04-14T03:38:41Z</updated>
<published>2025-02-24T00:00:00Z</published>
<summary type="text">Making Sense of Models: Connecting Science and Math Through Decoding and Modifying Computational Models
Lee, Irene A.; Sagartz, Mary; Meyer, Patricia; Anderson, Emma
The Making Sense of Models (MSM) curriculum was designed to bridge math and science learning through agent-based modeling and rich computational thinking investigations that do not require teaching computer programming in middle school classrooms. The MSM curriculum supports students in the NGSS skill of reasoning about how and why a phenomenon happens. After developing decoding skills, students are able to assess the validity of a model based on comparing mechanisms in the model to what they learned about the phenomenon being modeled. In this article, the authors describe the decoding approach and how the MSM curriculum supports students’ ability to reason about scientific models and the real world.
</summary>
<dc:date>2025-02-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cycle 7 VLBI Acceptance Report</title>
<link href="https://hdl.handle.net/1721.1/164721" rel="alternate"/>
<author>
<name>Crew, Geoff</name>
</author>
<id>https://hdl.handle.net/1721.1/164721</id>
<updated>2026-03-05T18:39:37Z</updated>
<published>2020-12-09T00:00:00Z</published>
<summary type="text">Cycle 7 VLBI Acceptance Report
Crew, Geoff
This report summarizes the acceptance process for VLBI which was carried out in early 2020 in preparation for the 2020 VLBI Campaigns. Even though the ALMA operations are suspended, the EHTC campaign has been cancelled, and the GMVA is going forwards without ALMA, it is still a useful exercise to report on the Acceptance testing that was done. This is especially true since (for a variety of reasons) the testing was more extensive this past January. It has also been several years since the initial Acceptance of VLBI for Cycle 4, and new features are finally to become available in Cycle 8, so it is reasonable to capture the state of things at this time. Going forward, it has been suggested as desirable for the Acceptance be added to the normal ALMA Acceptance process. This report thus serves to detail the sort of checks that can and should be made in the future. Some Action items are also noted for the near term.&#13;
On the bright side, the system was totally ready.&#13;
This report reviews the setup and on-site checks that can be made in a stand-alone ( no co-observing peers) mode. Then we present results from four VLBI sessions. For each, a CASA reduction is compared with a reduction of the VLBI data which (in three of the four cases) are correlated with participating EHTC sites.
This report was prepared for the formal acceptance of the software required for ALMA Observing Cycle 7.&#13;
Notionally it is ALMA Technical Note #20, but not published (yet) as such.
</summary>
<dc:date>2020-12-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Thermal analog computing: Application to matrix-vector multiplication with inverse-designed metastructures</title>
<link href="https://hdl.handle.net/1721.1/164719" rel="alternate"/>
<author>
<name>Silva, Caio</name>
</author>
<author>
<name>Romano, Giuseppe</name>
</author>
<id>https://hdl.handle.net/1721.1/164719</id>
<updated>2026-02-04T03:08:34Z</updated>
<published>2026-01-29T00:00:00Z</published>
<summary type="text">Thermal analog computing: Application to matrix-vector multiplication with inverse-designed metastructures
Silva, Caio; Romano, Giuseppe
The rising computational demand of modern workloads has renewed interest in energy-efficient paradigms, such as neuromorphic and analog computing. A fundamental operation in these systems is matrix-vector multiplication (MVM), ubiquitous in signal processing and machine learning. Here, we demonstrate MVM using inverse-designed metastructures that exploit heat conduction as the signal carrier. The proposed approach is based on a generalization of effective thermal conductivity to systems with multiple input and output ports: The input signal is encoded as a set of applied temperatures, while the output is represented by the power collected at designated terminals. The metastructures are obtained via density-based topology optimization, enabled by a differentiable thermal transport solver and automatic differentiation, achieving an accuracy greater than 99% in most cases across a pool of matrices with dimensions 2 ×2 and 3 ×3. We apply this methodology—termed thermal analog computing—to realize matrices relevant to practical tasks, including the discrete Fourier transform and convolutional filters. These findings open avenues for analog information processing in thermally active environments, including temperature-gradient sensing in microelectronics and thermal control systems.
</summary>
<dc:date>2026-01-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>When competition becomes contagious: Strategic arms racing spillovers, alliance politics, and the Sino-American nuclear competition</title>
<link href="https://hdl.handle.net/1721.1/164718" rel="alternate"/>
<author>
<name>Seitz, Samuel M.</name>
</author>
<author>
<name>Ji, Elliot S.</name>
</author>
<id>https://hdl.handle.net/1721.1/164718</id>
<updated>2026-02-04T03:08:48Z</updated>
<published>2025-08-10T00:00:00Z</published>
<summary type="text">When competition becomes contagious: Strategic arms racing spillovers, alliance politics, and the Sino-American nuclear competition
Seitz, Samuel M.; Ji, Elliot S.
The development of new conventional counterforce systems and improved missile defence systems enables non-nuclear states to directly influence the strategic nuclear balance. These dynamics increase the possibility of strategic arms racing spillovers, where arms racing in one dyad yields capabilities that threaten third parties’ arsenals and thus creates a type of security dilemma. It also increases the risk of non-nuclear allies entrapping their nuclear patrons in strategic arms racing. We illustrate this argument via the case of North and South Korea’s arms racing.
</summary>
<dc:date>2025-08-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Building communities of critical inquiry in the language classroom</title>
<link href="https://hdl.handle.net/1721.1/164717" rel="alternate"/>
<author>
<name>Dessein, Eva</name>
</author>
<author>
<name>Ledford, Julian A</name>
</author>
<id>https://hdl.handle.net/1721.1/164717</id>
<updated>2026-02-04T03:08:44Z</updated>
<published>2025-10-02T00:00:00Z</published>
<summary type="text">Building communities of critical inquiry in the language classroom
Dessein, Eva; Ledford, Julian A
Addressing issues of power, difference, and social stratification is essential in language education, where systemic inequities shape classroom experiences. This study examines the design and impact of three targeted modules implemented in beginner and intermediate French courses at two U.S. institutions. Grounded in critical pedagogical principles, the modules focused on language and power, inclusive language practices, and cultural and intercultural awareness. They aimed to foster critical inquiry through individual reflection and engagement with socially relevant topics. Analysis of student reflections and survey responses indicates that the modules supported learners in critically examining how language reinforces or challenges inequities, particularly in relation to gender biases and colonial legacies. Students reported increased awareness of linguistic hierarchies, a stronger sense of agency, and deeper reflection on language’s sociopolitical dimensions. The modules also encouraged engagement with inclusive language and cultural diversity. While the interventions promoted critical awareness and personal growth, findings point to limited peer interaction and community-building. This suggests a need for more structured opportunities for dialogic learning. Overall, the study highlights the transformative potential of critical pedagogy in language education and the importance of designing inclusive curricula that prepare students to reflect on and challenge systemic inequities.
</summary>
<dc:date>2025-10-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Managing technology-related disruptions and vulnerabilities in highly automated warehouse systems: an integrative review and research agenda</title>
<link href="https://hdl.handle.net/1721.1/164716" rel="alternate"/>
<author>
<name>Rodríguez-García, Miguel</name>
</author>
<author>
<name>Kembro, Joakim Hans</name>
</author>
<author>
<name>Betts, Kellen</name>
</author>
<author>
<name>Ponce-Cueto, Eva</name>
</author>
<id>https://hdl.handle.net/1721.1/164716</id>
<updated>2026-02-04T03:08:41Z</updated>
<published>2025-09-05T00:00:00Z</published>
<summary type="text">Managing technology-related disruptions and vulnerabilities in highly automated warehouse systems: an integrative review and research agenda
Rodríguez-García, Miguel; Kembro, Joakim Hans; Betts, Kellen; Ponce-Cueto, Eva
Recent technological developments in warehousing have introduced new risks. This paper presents an integrative review that combines insights from highly automated warehouse systems (HAWS) and risk management, providing a comprehensive understanding of technology-related warehouse disruptions and vulnerabilities. We identify five major disruptions that can affect HAWS: cyberattacks, technology sabotage, technology failures, power and network outages, and human-machine interaction issues. Moreover, we identify 48 technology-related vulnerabilities across all disruptions. In particular, HAWS have become vulnerable to cyberattacks due to the increasing number of warehouse technology suppliers, greater complexity of multi-robot networks such as AMRs, reliance on cloud-based systems, and cascading effect of cyberattacks due to higher levels of interconnectivity in HAWS networks. Our review also shows that risk management strategies in HAWS are unevenly covered in the literature. In response, we propose a research agenda with 17 pathways aimed at enhancing prevention, detection, mitigation, and recovery strategies for HAWS. Managers also benefit from the identified disruptions and vulnerabilities, as they serve as a reference point for understanding their specific technology-related risks in HAWS. In addition, managers can use our review of current risk management practices as a benchmark and our research agenda to think about areas that they could develop further.
</summary>
<dc:date>2025-09-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Preliminary Investigation of Gamma Radiation on the Chemical and Physical Characteristics of an Organic Coolant</title>
<link href="https://hdl.handle.net/1721.1/164715" rel="alternate"/>
<author>
<name>Vasquez, Angel</name>
</author>
<author>
<name>Seshadri, Arunkumar</name>
</author>
<author>
<name>Shirvan, Koroush</name>
</author>
<author>
<name>Buongiorno, Jacopo</name>
</author>
<id>https://hdl.handle.net/1721.1/164715</id>
<updated>2026-02-04T03:08:46Z</updated>
<published>2025-12-05T00:00:00Z</published>
<summary type="text">Preliminary Investigation of Gamma Radiation on the Chemical and Physical Characteristics of an Organic Coolant
Vasquez, Angel; Seshadri, Arunkumar; Shirvan, Koroush; Buongiorno, Jacopo
Organic-cooled reactor concepts offer potential advantages over traditional light water reactors, including operation at elevated temperatures and reduced pressures. However, radiation-induced degradation of organic coolants remains a critical concern requiring thorough investigation. This study examines the effects of gamma irradiation (1-MGy dose) on Dowtherm A (27% biphenyl, 73% diphenyl ether) under varying atmospheric conditions (ambient air versus argon) and temperatures (room temperature versus 250°C). Chemical characterization using Fourier transform infrared spectroscopy, ultraviolet-visible spectroscopy (UV-Vis), and gas chromatography-mass spectrometry revealed the formation of higher molecular weight byproducts, including terphenyls and quaterphenyls, along with notable biphenyl degradation. Physical property measurements using differential scanning calorimetry, rheometry, and thermal conductivity analysis demonstrated significant changes in the thermophysical properties, including decreased heat capacity and viscosity, with increased thermal conductivity observed under argon irradiation conditions. Pronounced photodarkening occurred in all the irradiated samples, with atmospheric conditions significantly influencing degradation pathways. UV-Vis analysis indicated that oxygen presence during irradiation suppresses certain chromophoric species formation. These findings provide crucial insights into radiation-induced degradation mechanisms and their impact on coolant performance, informing future organic coolant system design and optimization strategies for advanced reactor applications.
</summary>
<dc:date>2025-12-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Housing data politics in the United States: Inequitable open data, informal networks, and strategic neutrality</title>
<link href="https://hdl.handle.net/1721.1/164714" rel="alternate"/>
<author>
<name>Aizman, Asya</name>
</author>
<author>
<name>So, Wonyoung</name>
</author>
<author>
<name>Navalkha, Chenab</name>
</author>
<author>
<name>D’Ignazio, Catherine</name>
</author>
<id>https://hdl.handle.net/1721.1/164714</id>
<updated>2026-02-04T03:08:43Z</updated>
<published>2025-09-11T00:00:00Z</published>
<summary type="text">Housing data politics in the United States: Inequitable open data, informal networks, and strategic neutrality
Aizman, Asya; So, Wonyoung; Navalkha, Chenab; D’Ignazio, Catherine
Open housing data—property transactions, eviction filings, 311 complaints, and rental registries—have been a crucial resource for policymaking and real estate professionals. Meanwhile, housing data actors increasingly collect, analyze, and use data to address housing inequality, including efforts related to eviction prevention and land use reform, among others. This paper examines the motivations and practices of grassroots and institutional housing data actors. From a field scan of 67 entities engaged in housing data work across 12 U.S. states and 18 municipalities, we conducted 18 in-depth interviews to explore how housing data actors operate, their political goals, and data processes. We put forward a two‑axis framework that positions housing data actors according to their organizational structure (institutional/grassroots) and their stated data ideology (neutral/political). This framework contributes to understanding how different actors navigate complex issues such as embedded power dynamics and ethics in housing data. This two-axis view supplies a vocabulary for tracing how normative commitments and material constraints shape housing data pipelines and, ultimately, housing outcomes across the broader housing information ecosystem.
</summary>
<dc:date>2025-09-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Unconstrained Sovereignty: Delegation of Authority and Reversibility</title>
<link href="https://hdl.handle.net/1721.1/164713" rel="alternate"/>
<author>
<name>Grinberg, Mariya</name>
</author>
<id>https://hdl.handle.net/1721.1/164713</id>
<updated>2026-02-04T03:08:49Z</updated>
<published>2025-10-17T00:00:00Z</published>
<summary type="text">Unconstrained Sovereignty: Delegation of Authority and Reversibility
Grinberg, Mariya
The concept of sovereignty shapes our understanding of the world. Yet our current understanding of sovereignty conflates delegation of authority with loss of sovereignty. Delegation is relatively cheap, quick, and leads to an assured outcome; it’s an affirmation of sovereignty. Use of force, however, is required to regain lost sovereignty. I propose a definition of sovereignty that draws a clear distinction between sovereignty and delegated authority. Adopting this definition shows that sovereignty applies across time and space, it is indivisible, institutions do not place permanent constraints on supreme authority, and popular sovereignty is not a well-grounded concept.
</summary>
<dc:date>2025-10-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Concurrent Balanced Augmented Trees</title>
<link href="https://hdl.handle.net/1721.1/164712" rel="alternate"/>
<author>
<name>Wrench, Evan</name>
</author>
<author>
<name>Singh, Ajay</name>
</author>
<author>
<name>Roh, Younghun</name>
</author>
<author>
<name>Fatourou, Panagiota</name>
</author>
<author>
<name>Jayanti, Siddhartha</name>
</author>
<author>
<name>Ruppert, Eric</name>
</author>
<author>
<name>Wei, Yuanhao</name>
</author>
<id>https://hdl.handle.net/1721.1/164712</id>
<updated>2026-02-03T05:03:30Z</updated>
<published>2026-01-28T00:00:00Z</published>
<summary type="text">Concurrent Balanced Augmented Trees
Wrench, Evan; Singh, Ajay; Roh, Younghun; Fatourou, Panagiota; Jayanti, Siddhartha; Ruppert, Eric; Wei, Yuanhao
Augmentation makes search trees tremendously more versatile, allowing them to support efficient aggregation queries, order-statistic queries, and range queries in addition to insertion, deletion, and lookup. In this paper, we present the first lock-free augmented balanced search tree supporting generic augmentation functions. Our algorithmic ideas build upon a recent augmented unbalanced search tree presented by Fatourou and Ruppert [DISC, 2024]. We implement both data structures, solving some memory reclamation challenges in the process, and provide an experimental performance analysis of them. We also present optimized versions of our balanced tree that use delegation to achieve better scalability and performance (by more than 2x in most workloads). Our experiments show that our augmented balanced tree completes updates 2.2 to 30 times faster than the unbalanced augmented tree, and outperforms unaugmented trees by up to several orders of magnitude on 120 threads.
PPoPP ’26, Sydney, NSW, Australia
</summary>
<dc:date>2026-01-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Building Intelligent Agents with Neuro-Symbolic Concepts</title>
<link href="https://hdl.handle.net/1721.1/164711" rel="alternate"/>
<author>
<name>Mao, Jiayuan</name>
</author>
<author>
<name>Tenenbaum, Joshua</name>
</author>
<author>
<name>Wu, Jiajun</name>
</author>
<id>https://hdl.handle.net/1721.1/164711</id>
<updated>2026-02-03T05:03:25Z</updated>
<published>2026-01-28T00:00:00Z</published>
<summary type="text">Building Intelligent Agents with Neuro-Symbolic Concepts
Mao, Jiayuan; Tenenbaum, Joshua; Wu, Jiajun
This article presents a concept-centric paradigm for building agents that can learn continually and reason flexibly. The concept-centric agent utilizes a vocabulary of neuro-symbolic concepts. These concepts, such as object, relation, and action concepts, are grounded on sensory inputs and actuation outputs. They are also compositional, allowing for the creation of novel concepts through their structural combination. To facilitate learning and reasoning, the concepts are typed and represented using a combination of symbolic programs and neural network representations. Leveraging such neuro-symbolic concepts, the agent can efficiently learn and recombine them to solve various tasks across different domains, ranging from 2D images, videos, 3D scenes, and robotic manipulation tasks. This concept-centric framework offers several advantages, including data efficiency, compositional generalization, continual learning, and zero-shot transfer.
</summary>
<dc:date>2026-01-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Foundational Verification of Running-Time Bounds for Interactive Programs</title>
<link href="https://hdl.handle.net/1721.1/164710" rel="alternate"/>
<author>
<name>Tockman, Andy</name>
</author>
<author>
<name>Singh, Pratap</name>
</author>
<author>
<name>Erbsen, Andres</name>
</author>
<author>
<name>Gruetter, Samuel</name>
</author>
<author>
<name>Chlipala, Adam</name>
</author>
<id>https://hdl.handle.net/1721.1/164710</id>
<updated>2026-02-03T05:03:33Z</updated>
<published>2026-01-08T00:00:00Z</published>
<summary type="text">Foundational Verification of Running-Time Bounds for Interactive Programs
Tockman, Andy; Singh, Pratap; Erbsen, Andres; Gruetter, Samuel; Chlipala, Adam
Some important domains of software demand concrete bounds on how long functions may run, for instance for real-time cyberphysical systems where missed deadlines may damage industrial machinery. Such programs may interact with external devices throughout execution, where time deadlines ought to depend on, for instance, sensor readings (e.g. we only scramble to close a valve immediately when a sensor reports that a tank is about to overflow). We present the first software-development toolchain that delivers first-principles proofs of meaningful time bounds for interactive machine code, while allowing all per-application programming and verification to happen at the source-code level. We allow C-like programs to be proved against separation-logic specifications that also constrain their running time, and such proofs are composed with verification of a compiler to RISC-V machine code. All components are implemented and proved inside the Rocq proof assistant, producing final theorems whose statements depend only on machine-language formal semantics and some elementary specification constructions for describing running time. As a capstone case study, we extended a past verification (of a real microcontroller-based cyberphysical system) to bound time between arrival of network packets and actuation of an attached device.
CPP ’26, Rennes, France
</summary>
<dc:date>2026-01-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Network-RBV for Critical Minerals: How Standards, Permits, and Licensing Shape Midstream Bottlenecks</title>
<link href="https://hdl.handle.net/1721.1/164709" rel="alternate"/>
<author>
<name>Kegenbekov, Zhandos</name>
</author>
<author>
<name>Alipova, Alima</name>
</author>
<author>
<name>Jackson, Ilya</name>
</author>
<id>https://hdl.handle.net/1721.1/164709</id>
<updated>2026-02-03T05:04:11Z</updated>
<published>2026-01-20T00:00:00Z</published>
<summary type="text">Network-RBV for Critical Minerals: How Standards, Permits, and Licensing Shape Midstream Bottlenecks
Kegenbekov, Zhandos; Alipova, Alima; Jackson, Ilya
Critical mineral supply chains underpin electric mobility, power electronics, clean hydrogen, and advanced manufacturing. Drawing on the resource-based view (RBV), the relational view, and dynamic capabilities, we conceptualize advantage not as ownership of ore bodies but as orchestration of multi-tier resource systems: upstream access, midstream processing know-how, standards and permits, and durable inter-organizational ties. In a world of high concentration at key stages (refining, separation, engineered materials), full “decoupling” is economically costly and technologically constraining. We argue for structured cooperation among the United States, European Union, China, and other producers and consumers, combined with selective domestic capability building for bona fide security needs. Methodologically, we conduct a structured conceptual synthesis integrating RBV, relational view, dynamic capabilities, and network-of-network research, combined with a structured comparative policy analysis of U.S./EU/Chinese instruments anchored in official documents. We operationalize the argument via technology–material dependency maps that identify midstream bottlenecks and the policy/standard levers most likely to expand qualified, compliant capacity.
</summary>
<dc:date>2026-01-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>REEV SENSE IMUs for Spatiotemporal Gait Analysis in Post-Stroke Patients: Validation Against Optical Motion Capture</title>
<link href="https://hdl.handle.net/1721.1/164708" rel="alternate"/>
<author>
<name>Marsan, Thibault</name>
</author>
<author>
<name>Clauzade, Sacha</name>
</author>
<author>
<name>Zhang, Xiang</name>
</author>
<author>
<name>Grandin, Nicolas</name>
</author>
<author>
<name>Urman, Tatiana</name>
</author>
<author>
<name>Linton, Evan</name>
</author>
<author>
<name>Sibachir, Samy</name>
</author>
<author>
<name>Ricciardi, Catherine E.</name>
</author>
<author>
<name>Temporelli, Robin</name>
</author>
<id>https://hdl.handle.net/1721.1/164708</id>
<updated>2026-02-03T05:04:02Z</updated>
<published>2026-01-18T00:00:00Z</published>
<summary type="text">REEV SENSE IMUs for Spatiotemporal Gait Analysis in Post-Stroke Patients: Validation Against Optical Motion Capture
Marsan, Thibault; Clauzade, Sacha; Zhang, Xiang; Grandin, Nicolas; Urman, Tatiana; Linton, Evan; Sibachir, Samy; Ricciardi, Catherine E.; Temporelli, Robin
Objective gait assessment is essential for post-stroke rehabilitation monitoring, yet optical motion capture systems remain inaccessible to most clinical settings due to cost and infrastructure constraints. This study assessed the validity of the REEV SENSE IMU for measuring spatiotemporal gait parameters in post-stroke individuals and evaluated assistive device effects on measurement accuracy. Twenty chronic post-stroke participants were enrolled, and fourteen completed the study (ten without an assistive device, four using a cane) after applying pre-defined exclusion criteria (walking speed &lt;0.28 m/s, n = 6). Participants walked at self-selected speed while simultaneously being recorded by REEV SENSE IMUs and optical motion capture. Spatiotemporal parameters from matched heel strikes were compared using intraclass correlation coefficients (ICC), mean relative error (MRE), and Bland–Altman analysis. Temporal parameters demonstrated excellent reliability: contact time (ICC 0.96–0.99, MRE 2.77–5.45%), stride duration (ICC 0.95–0.99, MRE 2.57–2.62%), and cadence (ICC 0.98–0.99, MRE 1.80–1.93%). Spatial parameters showed greater variability, with stride length degrading substantially in slow-walking conditions (Cane group: ICC 0.76, MRE 8.60%). REEV SENSE provides reliable temporal parameter measurement comparable to commercial systems, positioning it as a practical tool for clinical gait monitoring in post-stroke rehabilitation. However, spatial parameter accuracy requires cautious interpretation in slow-walking regimes, necessitating independent validation when clinical decisions depend on precise stride length estimates.
</summary>
<dc:date>2026-01-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Who Am I? Eyebrow Follicles Minimize Donor-Derived DNA for Germline Testing After Hematopoietic Stem Cell Transplantation</title>
<link href="https://hdl.handle.net/1721.1/164707" rel="alternate"/>
<author>
<name>Mertens, Matthias</name>
</author>
<author>
<name>Sadlo, Mona</name>
</author>
<author>
<name>Kühl, Jörn-Sven</name>
</author>
<author>
<name>Metzeler, Klaus</name>
</author>
<author>
<name>Zschenderlein, Louisa</name>
</author>
<author>
<name>Edelmann, Jeanett</name>
</author>
<author>
<name>Lehmann, Claudia</name>
</author>
<author>
<name>Thull, Sarah</name>
</author>
<author>
<name>Karakaya, Mert</name>
</author>
<author>
<name>Velmans, Clara</name>
</author>
<author>
<name>Tumewu, Theresa</name>
</author>
<author>
<name>Böhme, Matthias</name>
</author>
<author>
<name>Klötzer, Christina</name>
</author>
<author>
<name>Weigert, Anne</name>
</author>
<author>
<name>Vucinic, Vladan</name>
</author>
<author>
<name>Hentschel, Julia</name>
</author>
<author>
<name>Mertens, Mareike</name>
</author>
<id>https://hdl.handle.net/1721.1/164707</id>
<updated>2026-02-03T05:03:59Z</updated>
<published>2026-01-11T00:00:00Z</published>
<summary type="text">Who Am I? Eyebrow Follicles Minimize Donor-Derived DNA for Germline Testing After Hematopoietic Stem Cell Transplantation
Mertens, Matthias; Sadlo, Mona; Kühl, Jörn-Sven; Metzeler, Klaus; Zschenderlein, Louisa; Edelmann, Jeanett; Lehmann, Claudia; Thull, Sarah; Karakaya, Mert; Velmans, Clara; Tumewu, Theresa; Böhme, Matthias; Klötzer, Christina; Weigert, Anne; Vucinic, Vladan; Hentschel, Julia; Mertens, Mareike
Germline genetic testing plays a critical role in diagnosing inherited predispositions and increasingly guides therapeutic and surveillance choices—but becomes technically challenging after allogeneic hematopoietic stem cell transplantation (HSCT), when donor-derived DNA contaminates host tissues. To address this, we compared donor-derived DNA across three accessible tissues—buccal swab, nail, and eyebrow follicles—in recipients after hematopoietic stem cell transplantation using two orthogonal assays (34-SNP next-generation sequencing and a 27-marker short tandem repeat panel) and modeled clinical covariates that influence chimerism. Eyebrow follicles showed consistently low donor DNA (median 1% by NGS; 3% by STR) whereas buccal swabs and nails carried substantially higher donor fractions (+25 and +22 percentage points versus eyebrow, respectively; both p &lt; 0.01). Across methods, STR yielded on average ≈6 percentage points higher donor fractions than NGS at low-level chimerism. Several transplant covariates correlated with chimerism: matched-related donors and a perfect HLA match (10/10) were each associated with lower donor DNA (≈12–14 and 15–20 percentage points, respectively); longer times since hematopoietic stem cell transplantation correlated with lower levels for nail samples, and donor–recipient sex match correlated with higher donor DNA (~7–8 percentage points). Even low-level chimerism can distort germline variant interpretation. We propose a pragmatic protocol for post-hematopoietic stem cell transplantation germline testing that prioritizes eyebrow follicles as the default tissue. An SNP-based quality control assay is used to flag unsafe donor fractions (≥ 5–10%) before comprehensive germline analysis, reducing the risk that chimeric donor DNA distorts germline variant interpretation.
</summary>
<dc:date>2026-01-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>The effect of settlements on the stresses in building frames</title>
<link href="https://hdl.handle.net/1721.1/164706" rel="alternate"/>
<author>
<name>Granberg, Robert J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164706</id>
<updated>2026-02-03T04:59:35Z</updated>
<published>1935-01-01T00:00:00Z</published>
<summary type="text">The effect of settlements on the stresses in building frames
Granberg, Robert J.
Thesis: B.S., Massachusetts Institute of Technology, Department of Building Engineering and Construction, 1935; Includes bibliographical references.
</summary>
<dc:date>1935-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Irradiation grafting of styrene onto dacron fibers and films</title>
<link href="https://hdl.handle.net/1721.1/164705" rel="alternate"/>
<author>
<name>Schnetzer, L. J.</name>
</author>
<author>
<name>Hendren, J. W.</name>
</author>
<id>https://hdl.handle.net/1721.1/164705</id>
<updated>2026-02-03T04:59:32Z</updated>
<published>1959-01-01T00:00:00Z</published>
<summary type="text">Irradiation grafting of styrene onto dacron fibers and films
Schnetzer, L. J.; Hendren, J. W.
Thesis: B.S., Massachusetts Institute of Technology, Department of Chemical Engineering, 1959; Includes bibliographical references (leaves 43-44).
</summary>
<dc:date>1959-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>An investigation of sound transmission irregularity in a one dimensional enclosure</title>
<link href="https://hdl.handle.net/1721.1/164704" rel="alternate"/>
<author>
<name>Foster, Isaac C.</name>
</author>
<id>https://hdl.handle.net/1721.1/164704</id>
<updated>2026-02-03T04:59:29Z</updated>
<published>1949-01-01T00:00:00Z</published>
<summary type="text">An investigation of sound transmission irregularity in a one dimensional enclosure
Foster, Isaac C.
Thesis: B.S., Massachusetts Institute of Technology, Department of Physics, 1949
</summary>
<dc:date>1949-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Deposition and characterization of very low pressure CVD silicon/silicon-germanium heteroepitaxial structures</title>
<link href="https://hdl.handle.net/1721.1/164703" rel="alternate"/>
<author>
<name>Tsai, Curtis.</name>
</author>
<id>https://hdl.handle.net/1721.1/164703</id>
<updated>2026-02-03T03:48:14Z</updated>
<published>1992-01-01T00:00:00Z</published>
<summary type="text">Deposition and characterization of very low pressure CVD silicon/silicon-germanium heteroepitaxial structures
Tsai, Curtis.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Electrical Engineering and Computer Science, 1992; Includes bibliographical references (leaves 135-146).
</summary>
<dc:date>1992-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>An experimental study of the law of parity conservation in electromagnetic interactions.</title>
<link href="https://hdl.handle.net/1721.1/164702" rel="alternate"/>
<author>
<name>Hegblom, Edwin Richard.</name>
</author>
<id>https://hdl.handle.net/1721.1/164702</id>
<updated>2026-02-03T03:48:30Z</updated>
<published>1965-01-01T00:00:00Z</published>
<summary type="text">An experimental study of the law of parity conservation in electromagnetic interactions.
Hegblom, Edwin Richard.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Physics, 1965
</summary>
<dc:date>1965-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analysis of a dynamic sales call policy model.</title>
<link href="https://hdl.handle.net/1721.1/164701" rel="alternate"/>
<author>
<name>Karash, Richard Ivan.</name>
</author>
<id>https://hdl.handle.net/1721.1/164701</id>
<updated>2026-02-03T04:59:26Z</updated>
<published>1968-01-01T00:00:00Z</published>
<summary type="text">Analysis of a dynamic sales call policy model.
Karash, Richard Ivan.
Thesis: B.S., Massachusetts Institute of Technology, Department of Physics, 1968; Bibliography: leaf 97.
</summary>
<dc:date>1968-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>MEKIN numerical modeling and simulation of the SPERT-III E-core transient tests</title>
<link href="https://hdl.handle.net/1721.1/164700" rel="alternate"/>
<author>
<name>Tan, Lip-Bu.</name>
</author>
<id>https://hdl.handle.net/1721.1/164700</id>
<updated>2026-02-03T04:58:28Z</updated>
<published>1980-01-01T00:00:00Z</published>
<summary type="text">MEKIN numerical modeling and simulation of the SPERT-III E-core transient tests
Tan, Lip-Bu.
Thesis: M.S., Massachusetts Institute of Technology, Department of Nuclear Engineering, 1980; Includes bibliographical references.
</summary>
<dc:date>1980-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Comparative tests of the Boston Elevated Co's surface cars</title>
<link href="https://hdl.handle.net/1721.1/164699" rel="alternate"/>
<author>
<name>Jones, Philip C.</name>
</author>
<author>
<name>Katsainos, Nicholas M.</name>
</author>
<id>https://hdl.handle.net/1721.1/164699</id>
<updated>2026-02-03T04:59:24Z</updated>
<published>1912-01-01T00:00:00Z</published>
<summary type="text">Comparative tests of the Boston Elevated Co's surface cars
Jones, Philip C.; Katsainos, Nicholas M.
Thesis: B.S., Massachusetts Institute of Technology, Department of Electrical Engineering, 1912
</summary>
<dc:date>1912-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rules for ring closure and aspects of organolithium chemistry</title>
<link href="https://hdl.handle.net/1721.1/164698" rel="alternate"/>
<author>
<name>Dupont, William Alan.</name>
</author>
<id>https://hdl.handle.net/1721.1/164698</id>
<updated>2026-02-03T03:48:24Z</updated>
<published>1980-01-01T00:00:00Z</published>
<summary type="text">Rules for ring closure and aspects of organolithium chemistry
Dupont, William Alan.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Chemistry, 1980; Vita.; Includes bibliographical references.
</summary>
<dc:date>1980-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dracut nickel ore ; Geology and concentration, ore no. 2592</title>
<link href="https://hdl.handle.net/1721.1/164697" rel="alternate"/>
<author>
<name>Burton, Eugene.</name>
</author>
<author>
<name>Spalding, William Livingston.</name>
</author>
<id>https://hdl.handle.net/1721.1/164697</id>
<updated>2026-02-03T04:58:59Z</updated>
<published>1905-01-01T00:00:00Z</published>
<summary type="text">Dracut nickel ore ; Geology and concentration, ore no. 2592
Burton, Eugene.; Spalding, William Livingston.
Thesis: B.S., Massachusetts Institute of Technology, Department of Mining Engineering and Metallurgy, 1905
</summary>
<dc:date>1905-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evaluation of recirculating well technology with a cost comparison to pump and treat technology for containment of the CS-10 contaminant plume at the Massachusetts Military Reservation</title>
<link href="https://hdl.handle.net/1721.1/164696" rel="alternate"/>
<author>
<name>Smith, Mathew D.
            (Mathew Darin)</name>
</author>
<id>https://hdl.handle.net/1721.1/164696</id>
<updated>2026-02-03T04:58:24Z</updated>
<published>1997-01-01T00:00:00Z</published>
<summary type="text">Evaluation of recirculating well technology with a cost comparison to pump and treat technology for containment of the CS-10 contaminant plume at the Massachusetts Military Reservation
Smith, Mathew D.
            (Mathew Darin)
Thesis: M. Eng., Massachusetts Institute of Technology, Department of Civil and Environmental Engineering, 1997; Includes bibliographical references (leaves 43-45).
</summary>
<dc:date>1997-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The crystallization of sucrose</title>
<link href="https://hdl.handle.net/1721.1/164695" rel="alternate"/>
<author>
<name>Brown, Ernest K.</name>
</author>
<id>https://hdl.handle.net/1721.1/164695</id>
<updated>2026-02-03T04:58:17Z</updated>
<published>1929-01-01T00:00:00Z</published>
<summary type="text">The crystallization of sucrose
Brown, Ernest K.
Thesis: M.S., Massachusetts Institute of Technology, Department of Chemical Engineering, 1929; Includes bibliographical references (leaf 81).
</summary>
<dc:date>1929-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantum Circuits Are Just a Phase</title>
<link href="https://hdl.handle.net/1721.1/164694" rel="alternate"/>
<author>
<name>Heunen, Chris</name>
</author>
<author>
<name>Lemonnier, Louis</name>
</author>
<author>
<name>McNally, Christopher</name>
</author>
<author>
<name>Rice, Alex</name>
</author>
<id>https://hdl.handle.net/1721.1/164694</id>
<updated>2026-02-03T05:03:32Z</updated>
<published>2026-01-08T00:00:00Z</published>
<summary type="text">Quantum Circuits Are Just a Phase
Heunen, Chris; Lemonnier, Louis; McNally, Christopher; Rice, Alex
Quantum programs today are written at a low level of abstraction---quantum circuits akin to assembly languages - and the unitary parts of even advanced quantum programming languages essentially function as circuit description languages. This state of affairs impedes scalability, clarity, and support for higher-level reasoning. More abstract and expressive quantum programming constructs are needed.&#13;
&#13;
To this end, we introduce a simple syntax for generating unitaries from "just a phase"; we combine a (global) phase operation that captures phase shifts with a quantum analogue of the "if let" construct that captures subspace selection via pattern matching. This minimal language lifts the focus from gates to eigendecomposition, conjugation, and controlled unitaries; common building blocks in quantum algorithm design.&#13;
&#13;
We demonstrate several aspects of the expressive power of our language in several ways. Firstly, we establish that our representation is universal by deriving a universal quantum gate set. Secondly, we show that important quantum algorithms can be expressed naturally and concisely, including Grover's search algorithm, Hamiltonian simulation, Quantum Fourier Transform, Quantum Signal Processing, and the Quantum Eigenvalue Transformation. Furthermore, we give clean denotational semantics grounded in categorical quantum mechanics. Finally, we implement a prototype compiler that efficiently translates terms of our language to quantum circuits, and prove that it is sound with respect to these semantics. Collectively, these contributions show that this construct offers a principled and practical step toward more abstract and structured quantum programming.
</summary>
<dc:date>2026-01-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Digital Engineering Framework for Piston Pin Bearings via Multi-Physics Thermo-Elasto-Hydrodynamic Modeling</title>
<link href="https://hdl.handle.net/1721.1/164693" rel="alternate"/>
<author>
<name>Shu, Zhiyuan</name>
</author>
<author>
<name>Tian, Tian</name>
</author>
<id>https://hdl.handle.net/1721.1/164693</id>
<updated>2026-02-03T05:04:01Z</updated>
<published>2026-01-10T00:00:00Z</published>
<summary type="text">A Digital Engineering Framework for Piston Pin Bearings via Multi-Physics Thermo-Elasto-Hydrodynamic Modeling
Shu, Zhiyuan; Tian, Tian
The piston pin operates under severe mechanical and thermal conditions, making accurate lubrication prediction essential for engine durability. This study presents a comprehensive digital engineering framework for piston pin bearings, built upon a fully coupled thermo-elasto-hydrodynamic (TEHD) formulation. The framework integrates: (1) a Reynolds-equation hydrodynamic solver with temperature-/pressure-dependent viscosity and cavitation; (2) elastic deformation obtained from FEA (finite element analysis)-based compliance matrices; (3) a break-in module that iteratively adjusts surface profiles before steady-state simulation; (4) a three-body heat transfer model resolving heat conduction, convection, and solid&amp;ndash;liquid interfacial heat exchange. Applied to a heavy-duty diesel engine, the framework reproduces experimentally observed behaviors, including bottom-edge rounding at the small end and the slow unidirectional drift of the floating pin. By integrating multi-physics modeling with design-level flexibility, this work aims to provide a robust digital twin for the piston-pin system, enabling virtual diagnostics, early-stage failure prediction, and data-driven design optimization for engine development.
</summary>
<dc:date>2026-01-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Wafold: Curvature-Driven Termination and Dimensional Compression in Black Holes</title>
<link href="https://hdl.handle.net/1721.1/164692" rel="alternate"/>
<author>
<name>Viaña, Javier</name>
</author>
<id>https://hdl.handle.net/1721.1/164692</id>
<updated>2026-02-03T05:04:13Z</updated>
<published>2025-12-23T00:00:00Z</published>
<summary type="text">The Wafold: Curvature-Driven Termination and Dimensional Compression in Black Holes
Viaña, Javier
This work explores a geometric description of black holes in which spacetime terminates on a curvature-triggered hypersurface rather than extending to an interior singularity. We study the implications of a scenario in which, upon reaching a critical curvature threshold, the three-dimensional spatial geometry compresses into a thin, closed boundary identified here as the wafold. Beyond this, the manifold would no longer continue, and all mass–energy and information would be confined to the hypersurface itself. This framework combines two well-explored paths: (1) curvature-driven geometric compression, in which extreme curvature forces the bulk degrees of freedom to become supported on a thin hypersurface (without altering the underlying dimensionality of spacetime), and (2) the motivation underlying the holographic principle, namely that black-hole entropy scales with surface area rather than volume, suggesting that information is governed by a boundary geometry rather than a bulk volume. We elaborate a dimensional conversion law that would be required to describe the collapse of spatial volume into surface area as a conserved flux of geometric capacity across the wafold, and we analyze the resulting consequences of treating this hypersurface as the terminal boundary of the manifold.
</summary>
<dc:date>2025-12-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design and Implementation of an Automated Thermal Imaging Device for Lower Limb Prosthetic Applications</title>
<link href="https://hdl.handle.net/1721.1/164691" rel="alternate"/>
<author>
<name>Pizarro, Daniel</name>
</author>
<author>
<name>Huegel, Joel C.</name>
</author>
<author>
<name>Diaz, Elias</name>
</author>
<author>
<name>Alemon, Beatriz</name>
</author>
<author>
<name>Herr, Hugh</name>
</author>
<author>
<name>Felix-Herran, Luis C.</name>
</author>
<id>https://hdl.handle.net/1721.1/164691</id>
<updated>2026-02-03T05:04:10Z</updated>
<published>2025-12-18T00:00:00Z</published>
<summary type="text">Design and Implementation of an Automated Thermal Imaging Device for Lower Limb Prosthetic Applications
Pizarro, Daniel; Huegel, Joel C.; Diaz, Elias; Alemon, Beatriz; Herr, Hugh; Felix-Herran, Luis C.
Since elevated temperature and humidity may occur at the prosthetic socket–skin interface, it is essential to collect thermal data from the residual limb, as this information serves as an indicator of adverse effects such as irritation, postural problems, and significant damage to health. These data are obtained non-invasively through the execution of a thermal imaging (TI) procedure. However, the precision and repeatability of a TI procedure rely significantly on its execution technique. This work presents the design and implementation of a mechatronic device that automates a thermal imaging technique. The application of the device is in lower-limb prosthetics evaluation. The proposed system improves data acquisition consistency by reducing execution time and minimizing human error, thereby enhancing the reproducibility and reliability of thermal measurements. The introduced device, Thermal Imaging Booth, proposes an automated solution for TI standardization in clinical and research settings. By minimizing inconsistencies, this system improves the diagnostic potential of thermography, facilitating its adoption in biomedical applications.
</summary>
<dc:date>2025-12-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Peepco: Batch-Based Consistency Optimization</title>
<link href="https://hdl.handle.net/1721.1/164690" rel="alternate"/>
<author>
<name>Kuraj, Ivan</name>
</author>
<author>
<name>Feser, John</name>
</author>
<author>
<name>Polikarpova, Nadia</name>
</author>
<author>
<name>Solar-Lezama, Armando</name>
</author>
<id>https://hdl.handle.net/1721.1/164690</id>
<updated>2026-02-01T07:32:05Z</updated>
<published>2025-04-09T00:00:00Z</published>
<summary type="text">Peepco: Batch-Based Consistency Optimization
Kuraj, Ivan; Feser, John; Polikarpova, Nadia; Solar-Lezama, Armando
We present batch-based consistency, a new approach for consistency optimization that allows programmers to specialize consistency with application-level integrity properties. We implement the approach with a two-step process: we statically infer optimal consistency requirements for executions of bounded sets of operations, and then, use the inferred requirements to parameterize a new distributed protocol to relax operation reordering at run time when it is safe to do so. Our approach supports standard notions of consistency. We implement batch-based consistency in Peepco, demonstrate its expressiveness for partial data replication, and examine Peepco&amp;#8217;s run-time performance impact in different settings.
</summary>
<dc:date>2025-04-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Finch: Sparse and Structured Tensor Programming with Control Flow</title>
<link href="https://hdl.handle.net/1721.1/164689" rel="alternate"/>
<author>
<name>Ahrens, Willow</name>
</author>
<author>
<name>Collin, Teodoro</name>
</author>
<author>
<name>Patel, Radha</name>
</author>
<author>
<name>Deeds, Kyle</name>
</author>
<author>
<name>Hong, Changwan</name>
</author>
<author>
<name>Amarasinghe, Saman</name>
</author>
<id>https://hdl.handle.net/1721.1/164689</id>
<updated>2026-02-01T07:31:58Z</updated>
<published>2025-04-09T00:00:00Z</published>
<summary type="text">Finch: Sparse and Structured Tensor Programming with Control Flow
Ahrens, Willow; Collin, Teodoro; Patel, Radha; Deeds, Kyle; Hong, Changwan; Amarasinghe, Saman
From FORTRAN to NumPy, tensors have revolutionized how we express computation. However, tensors in these, and almost all prominent systems, can only handle dense rectilinear integer grids.  Real world tensors often contain underlying structure, such as sparsity, runs of repeated values, or symmetry.  Support for structured data is fragmented and incomplete.  Existing frameworks limit the tensor structures and program control flow they support to better simplify the problem.&#13;
&#13;
In this work, we propose a new programming language, Finch, which supports both flexible control flow and diverse data structures. Finch facilitates a programming model which resolves the challenges of computing over structured tensors by combining control flow and data structures into a common representation where they can be co-optimized. Finch automatically specializes control flow to data so that performance engineers can focus on experimenting with many algorithms. Finch supports a familiar programming language of loops, statements, ifs, breaks, etc., over a wide variety of tensor structures, such as sparsity, run-length-encoding, symmetry, triangles, padding, or blocks. Finch reliably utilizes the key properties of structure, such as structural zeros, repeated values, or clustered non-zeros. We show that this leads to dramatic speedups in operations such as SpMV and SpGEMM, image processing, and graph analytics.
</summary>
<dc:date>2025-04-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Smooth, Integrated Proofs of Cryptographic Constant Time for Nondeterministic Programs and Compilers</title>
<link href="https://hdl.handle.net/1721.1/164688" rel="alternate"/>
<author>
<name>Conoly, Owen</name>
</author>
<author>
<name>Erbsen, Andres</name>
</author>
<author>
<name>Chlipala, Adam</name>
</author>
<id>https://hdl.handle.net/1721.1/164688</id>
<updated>2026-02-01T07:32:16Z</updated>
<published>2025-06-13T00:00:00Z</published>
<summary type="text">Smooth, Integrated Proofs of Cryptographic Constant Time for Nondeterministic Programs and Compilers
Conoly, Owen; Erbsen, Andres; Chlipala, Adam
Formal verification of software and compilers has been used to rule out large classes of security-critical issues, but risk of unintentional information leakage has received much less consideration. It is a key requirement for formal specifications to leave some details of a system's behavior unspecified so that future implementation changes can be accommodated, and yet it is nonetheless expected that these choices would not be made based on confidential information the system handles. This paper formalizes that notion using omnisemantics and plain single-copy assertions, giving for the first time a specification of what it means for a nondeterministic program to be constant-time or more generally to avoid leaking (a part of) its inputs. We use this theory to prove data-leak-free execution of core cryptographic routines compiled from Bedrock2 C to RISC-V machine code, showing that the smooth specification and proof experience omnisemantics provides for nondeterminism extends to constant-time properties in the same setting. We also study variants of the key program-compiler contract, highlighting pitfalls of tempting simplifications and subtle consequences of how inputs to nondeterministic choices are constrained. Our results are backed by modular program-logic and compiler-correctness theorems, and they integrate into a neat end-to-end theorem in the Coq proof assistant.
</summary>
<dc:date>2025-06-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>NeuroChat: A Neuroadaptive AI Chatbot for Customizing Learning Experiences</title>
<link href="https://hdl.handle.net/1721.1/164687" rel="alternate"/>
<author>
<name>Baradari, D?nya</name>
</author>
<author>
<name>Kosmyna, Nataliya</name>
</author>
<author>
<name>Petrov, Oscar</name>
</author>
<author>
<name>Kaplun, Rebecah</name>
</author>
<author>
<name>Maes, Pattie</name>
</author>
<id>https://hdl.handle.net/1721.1/164687</id>
<updated>2026-02-01T07:32:11Z</updated>
<published>2025-07-08T00:00:00Z</published>
<summary type="text">NeuroChat: A Neuroadaptive AI Chatbot for Customizing Learning Experiences
Baradari, D?nya; Kosmyna, Nataliya; Petrov, Oscar; Kaplun, Rebecah; Maes, Pattie
Generative AI is reshaping education by enabling personalized, on-demand learning experiences. However, current AI systems lack awareness of the learner’s cognitive state, limiting their adaptability. In parallel, electroencephalography (EEG)-based neuroadaptive systems have shown promise in enhancing engagement through real-time physiological feedback. This paper introduces NeuroChat, a neuroadaptive AI tutor that integrates real-time EEG-based engagement tracking with a large language model to adapt its conversational responses. By continuously monitoring learners’ cognitive engagement, NeuroChat dynamically adjusts content complexity, tone, and response style in a closed-loop interaction. In a within-subjects study (n = 24), NeuroChat significantly increased both EEG-measured and self-reported engagement compared to a non-adaptive chatbot. However, no significant differences in short-term learning outcomes were observed. These findings demonstrate the feasibility of real-time brain–AI interaction for education and highlight opportunities for deeper personalization, longer-term adaptation, and richer learning assessment in future neuroadaptive systems.
CUI ’25, Waterloo, ON, Canada
</summary>
<dc:date>2025-07-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>From Synthetic to Human: The Gap Between AI-Predicted and Actual Pro-Environmental Behavior Change After Chatbot Persuasion</title>
<link href="https://hdl.handle.net/1721.1/164686" rel="alternate"/>
<author>
<name>Doudkin, Alexander</name>
</author>
<author>
<name>Pataranutaporn, Pat</name>
</author>
<author>
<name>Maes, Pattie</name>
</author>
<id>https://hdl.handle.net/1721.1/164686</id>
<updated>2026-02-01T07:32:08Z</updated>
<published>2025-07-07T00:00:00Z</published>
<summary type="text">From Synthetic to Human: The Gap Between AI-Predicted and Actual Pro-Environmental Behavior Change After Chatbot Persuasion
Doudkin, Alexander; Pataranutaporn, Pat; Maes, Pattie
Pro-environmental behavior (PEB) is vital to combat climate change, yet turning awareness into intention and action remains elusive. We explore large language models (LLMs) as tools to promote PEB, comparing their impact across 3,600 participants: real humans (n=1,200), simulated humans based on actual participant data (n=1,200), and fully synthetic personas (n=1,200). All three participant groups faced either personalized chatbots, standard chatbots, or static statements, employing four persuasion strategies (moral foundations, future self-continuity, action orientation, or ”freestyle” chosen by the LLM). Results reveal a ”synthetic persuasion paradox”: synthetic and simulated participants significantly change their post-intervention PEB stance, while human attitudes barely shift. Simulated participants better approximate human behavior but still overestimate effects. This disconnect underscores LLM’s potential for pre-evaluating PEB interventions but warns of its limits in predicting human responses. We call for refined synthetic modeling and sustained and extended human trials to align conversational AI’s promise with tangible sustainability outcomes.
CUI ’25, Waterloo, ON, Canada
</summary>
<dc:date>2025-07-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Adaptive Approximation Schemes for Matching Queues</title>
<link href="https://hdl.handle.net/1721.1/164685" rel="alternate"/>
<author>
<name>AmaniHamedani, Alireza</name>
</author>
<author>
<name>Aouad, Ali</name>
</author>
<author>
<name>Saberi, Amin</name>
</author>
<id>https://hdl.handle.net/1721.1/164685</id>
<updated>2026-02-01T07:32:06Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Adaptive Approximation Schemes for Matching Queues
AmaniHamedani, Alireza; Aouad, Ali; Saberi, Amin
We study a continuous-time, infinite-horizon dynamic bipartite matching problem. Suppliers arrive according to a Poisson process; while waiting, they may abandon the queue at a uniform rate. Customers on the other hand must be matched upon arrival. The objective is to minimize the expected long-term average cost subject to a throughput constraint on the total match rate.&#13;
Previous literature on dynamic matching focuses on ”static” policies, where the matching decisions do not depend explicitly on the state of the supplier queues, achieving constant-factor approximations. By contrast, we design ”adaptive” policies, which leverage queue length information, and obtain near-optimal polynomial-time algorithms for several classes of instances.&#13;
First, we develop a bi-criteria fully polynomial-time approximation scheme for dynamic matching on networks with a constant number of queues—that computes a (1−є)-approximation of the optimal policy in time polynomial in both the input size and 1/є. A key new technique is a hybrid LP relaxation, which combines static and state-dependent LP approximations of the queue dynamics, after a decomposition of the network. Networks with a constant number of queues are motivated by deceased organ donation schemes, where the supply types can be divided according to blood and tissue types.&#13;
The above algorithm, combined with a careful cell decomposition gives a polynomial-time approximation scheme for dynamic matching on Euclidean networks of fixed dimension. The Euclidean case is of interest in ride-hailing and spatial service platforms, where the goal is to fulfill as many trips as possible while minimizing driving distances.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Output-Sensitive Approximate Counting via a Measure-Bounded Hyperedge Oracle, or: How Asymmetry Helps Estimate &amp;#55349;&amp;#56408;-Clique Counts Faster</title>
<link href="https://hdl.handle.net/1721.1/164684" rel="alternate"/>
<author>
<name>Censor-Hillel, Keren</name>
</author>
<author>
<name>Even, Tomer</name>
</author>
<author>
<name>Vassilevska Williams, Virginia</name>
</author>
<id>https://hdl.handle.net/1721.1/164684</id>
<updated>2026-02-01T07:32:12Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Output-Sensitive Approximate Counting via a Measure-Bounded Hyperedge Oracle, or: How Asymmetry Helps Estimate &amp;#55349;&amp;#56408;-Clique Counts Faster
Censor-Hillel, Keren; Even, Tomer; Vassilevska Williams, Virginia
Dell, Lapinskas and Meeks [DLM SICOMP 2022] presented a general reduction from approximate counting to decision for a class of fine-grained problems that can be viewed as hyperedge counting or detection problems in an implicit hypergraph, thus obtaining tight equivalences between approximate counting and decision for many key problems such as k-clique, k-sum and more. Their result is a reduction from approximately counting the number of hyperedges in an implicit k-partite hypergraph to a polylogarithmic number of calls to a hyperedge oracle that returns whether a given subhypergraph contains an edge.&#13;
The main result of this paper is a generalization of the DLM result for output-sensitive approximate counting, where the running time of the desired counting algorithm is inversely proportional to the number of witnesses. Our theorem is a reduction from approximately counting the (unknown) number of hyperedges in an implicit k-partite hypergraph to a polylogarithmic number of calls to a hyperedge oracle called only on subhypergraphs with a small “measure”. If a subhypergraph has ui nodes in the ith node partition of the k-partite hypergraph, then its measure is ∏i ui.&#13;
Using the new general reduction and by efficiently implementing measure-bounded colorful independence oracles, we obtain new improved output-sensitive approximate counting algorithms for k-clique, k-dominating set and k-sum. In graphs with nt k-cliques, for instance, our algorithm (1± є)-approximates the k-clique count in time Õє(nω(k−t−1/3,k−t/3,k−t+2/3) +n2), where ω(a,b,c) is the exponent of na× nb by nb× nc matrix multiplication. For large k and t&gt;2, this is a substantial improvement over prior work, even if ω=2.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Lightweight and Locality-Aware Composition of Black-Box Subroutines</title>
<link href="https://hdl.handle.net/1721.1/164683" rel="alternate"/>
<author>
<name>Bansal, Manya</name>
</author>
<author>
<name>Sharlet, Dillon</name>
</author>
<author>
<name>Ragan-Kelley, Jonathan</name>
</author>
<author>
<name>Amarasinghe, Saman</name>
</author>
<id>https://hdl.handle.net/1721.1/164683</id>
<updated>2026-02-01T07:32:14Z</updated>
<published>2025-06-13T00:00:00Z</published>
<summary type="text">Lightweight and Locality-Aware Composition of Black-Box Subroutines
Bansal, Manya; Sharlet, Dillon; Ragan-Kelley, Jonathan; Amarasinghe, Saman
Subroutines are essential building blocks in software design: users encapsulate common functionality in libraries and write applications by composing calls to subroutines. Unfortunately, performance may be lost at subroutine boundaries due to reduced locality and increased memory consumption. Operator fusion helps recover performance lost at composition boundaries. Previous solutions fuse operators by manually rewriting code into monolithic fused subroutines, or by relying on heavy-weight compilers to generate code that performs fusion. Both approaches require a semantic understanding of the entire computation, breaking the decoupling necessary for modularity and reusability of subroutines.&#13;
&#13;
In this work, we attempt to identify the minimal ingredients required to fuse computations, enabling composition of subroutines without sacrificing performance or modularity. We find that, unlike previous approaches that require a semantic understanding of the computation, most opportunities for fusion require understanding only data production and consumption patterns. Exploiting this insight, we add fusion on top of black-box subroutines by proposing a lightweight enrichment of subroutine declarations to expose data-dependence patterns. We implement our approach in a system called Fern, and demonstrate Fern's benefits by showing that it is competitive with state-of-the-art, high-performance libraries with manually fused operators, can fuse across library and domain boundaries for unforeseen workloads, and can deliver speedups of up to $5\times$ over unfused code.
</summary>
<dc:date>2025-06-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Prolonged photostability in hexagonal boron nitride quantum emitters</title>
<link href="https://hdl.handle.net/1721.1/164682" rel="alternate"/>
<author>
<name>Li, Sylvia Xin</name>
</author>
<author>
<name>Ichihara, Takeo</name>
</author>
<author>
<name>Park, Hyoju</name>
</author>
<author>
<name>He, Guangwei</name>
</author>
<author>
<name>Kozawa, Daichi</name>
</author>
<author>
<name>Wen, Yi</name>
</author>
<author>
<name>Koman, Volodymyr B</name>
</author>
<author>
<name>Zeng, Yuwen</name>
</author>
<author>
<name>Kuehne, Matthias</name>
</author>
<author>
<name>Yuan, Zhe</name>
</author>
<author>
<name>Faucher, Samuel</name>
</author>
<author>
<name>Warner, Jamie H</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<id>https://hdl.handle.net/1721.1/164682</id>
<updated>2026-02-01T07:32:52Z</updated>
<published>2023-03-06T00:00:00Z</published>
<summary type="text">Prolonged photostability in hexagonal boron nitride quantum emitters
Li, Sylvia Xin; Ichihara, Takeo; Park, Hyoju; He, Guangwei; Kozawa, Daichi; Wen, Yi; Koman, Volodymyr B; Zeng, Yuwen; Kuehne, Matthias; Yuan, Zhe; Faucher, Samuel; Warner, Jamie H; Strano, Michael S
Single-photon emitters are crucial building blocks for optical quantum technologies. Hexagonal boron nitride (hBN) is a promising two-dimensional material that hosts bright, room-temperature single-photon emitters. However, photo instability is a persistent challenge preventing practical applications of these properties. Here, we reveal the ubiquitous photobleaching of hBN vacancy emitters. Independent of the source or the number of hBN layers, we find that the photobleaching of a common emission at 1.98 ± 0.05 eV can be described by two consistent time constants, namely a first bleaching lifetime of 5 to 10 s, and a second bleaching lifetime in the range of 150 to 220 s. Only the former is environmentally sensitive and can be significantly mitigated by shielding O&lt;jats:sub&gt;2&lt;/jats:sub&gt;, whereas the latter could be the result of carbon-assisted defect migration. Annular dark-field scanning transmission electron microscopy of photobleached hBN allows for visualizing vacancy defects and carbon substitution at single atom resolution, supporting the migration mechanism along with X-ray photoelectron spectroscopy. Thermal annealing at 850 °C of liquid exfoliated hBN eliminates both bleaching processes, leading to persistent photostability. These results represent a significant advance to potentially engineer hBN vacancy emitters with the photostability requisite for quantum applications.
</summary>
<dc:date>2023-03-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Discretized hexagonal boron nitride quantum emitters and their chemical interconversion</title>
<link href="https://hdl.handle.net/1721.1/164681" rel="alternate"/>
<author>
<name>Kozawa, Daichi</name>
</author>
<author>
<name>Li, Sylvia Xin</name>
</author>
<author>
<name>Ichihara, Takeo</name>
</author>
<author>
<name>Rajan, Ananth Govind</name>
</author>
<author>
<name>Gong, Xun</name>
</author>
<author>
<name>He, Guangwei</name>
</author>
<author>
<name>Koman, Volodymyr B</name>
</author>
<author>
<name>Zeng, Yuwen</name>
</author>
<author>
<name>Kuehne, Matthias</name>
</author>
<author>
<name>Silmore, Kevin S</name>
</author>
<author>
<name>Parviz, Dorsa</name>
</author>
<author>
<name>Liu, Pingwei</name>
</author>
<author>
<name>Liu, Albert Tianxiang</name>
</author>
<author>
<name>Faucher, Samuel</name>
</author>
<author>
<name>Yuan, Zhe</name>
</author>
<author>
<name>Warner, Jamie</name>
</author>
<author>
<name>Blankschtein, Daniel</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<id>https://hdl.handle.net/1721.1/164681</id>
<updated>2026-02-01T07:32:50Z</updated>
<published>2023-01-03T00:00:00Z</published>
<summary type="text">Discretized hexagonal boron nitride quantum emitters and their chemical interconversion
Kozawa, Daichi; Li, Sylvia Xin; Ichihara, Takeo; Rajan, Ananth Govind; Gong, Xun; He, Guangwei; Koman, Volodymyr B; Zeng, Yuwen; Kuehne, Matthias; Silmore, Kevin S; Parviz, Dorsa; Liu, Pingwei; Liu, Albert Tianxiang; Faucher, Samuel; Yuan, Zhe; Warner, Jamie; Blankschtein, Daniel; Strano, Michael S
Quantum emitters in two-dimensional hexagonal boron nitride (hBN) are of significant interest because of their unique photophysical properties, such as single-photon emission at room temperature, and promising applications in quantum computing and communications. The photoemission from hBN defects covers a wide range of emission energies but identifying and modulating the properties of specific emitters remain challenging due to uncontrolled formation of hBN defects. In this study, more than 2000 spectra are collected consisting of single, isolated zero-phonon lines (ZPLs) between 1.59 and 2.25 eV from diverse sample types. Most of ZPLs are organized into seven discretized emission energies. All emitters exhibit a range of lifetimes from 1 to 6 ns, and phonon sidebands offset by the dominant lattice phonon in hBN near 1370 cm−1. Two chemical processing schemes are developed based on water and boric acid etching that generate or preferentially interconvert specific emitters, respectively. The identification and chemical interconversion of these discretized emitters should significantly advance the understanding of solid-state chemistry and photophysics of hBN quantum emission.
</summary>
<dc:date>2023-01-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rational Design and Efficacy of Glucose‐Responsive Insulin Therapeutics and Insulin Delivery Systems by Computation Using Connected Human and Rodent Models</title>
<link href="https://hdl.handle.net/1721.1/164680" rel="alternate"/>
<author>
<name>Yang, Sungyun</name>
</author>
<author>
<name>Yang, Jing Fan</name>
</author>
<author>
<name>Gong, Xun</name>
</author>
<author>
<name>Weiss, Michael A</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<id>https://hdl.handle.net/1721.1/164680</id>
<updated>2026-02-01T07:32:49Z</updated>
<published>2023-06-15T00:00:00Z</published>
<summary type="text">Rational Design and Efficacy of Glucose‐Responsive Insulin Therapeutics and Insulin Delivery Systems by Computation Using Connected Human and Rodent Models
Yang, Sungyun; Yang, Jing Fan; Gong, Xun; Weiss, Michael A; Strano, Michael S
Glucose‐responsive insulins (GRIs) use plasma glucose levels in a diabetic patient to activate a specifically designed insulin analogue to a more potent state in real time. Alternatively, some GRI concepts use glucose‐mediated release or injection of insulin into the bloodstream. GRIs hold promise to exhibit much improved pharmacological control of the plasma glucose concentration, particularly for the problem of therapeutically induced hypoglycemia. Several innovative GRI schemes are introduced into the literature, but there remains a dearth of quantitative analysis to aid the development and optimization of these constructs into effective therapeutics. This work evaluates several classes of GRIs that are proposed using a pharmacokinetic model as previously described, PAMERAH, simulating the glucoregulatory system of humans and rodents. GRI concepts are grouped into three mechanistic classes: 1) intrinsic GRIs, 2) glucose‐responsive particles, and 3) glucose‐responsive devices. Each class is analyzed for optimal designs that maintain glucose levels within the euglycemic range. These derived GRI parameter spaces are then compared between rodents and humans, providing the differences in clinical translation success for each candidate. This work demonstrates a computational framework to evaluate the potential clinical translatability of existing glucose‐responsive systems, providing a useful approach for future GRI development.
</summary>
<dc:date>2023-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wearable sensors for monitoring marine environments and their inhabitants</title>
<link href="https://hdl.handle.net/1721.1/164679" rel="alternate"/>
<author>
<name>Kaidarova, Altynay</name>
</author>
<author>
<name>Geraldi, Nathan R</name>
</author>
<author>
<name>Wilson, Rory P</name>
</author>
<author>
<name>Kosel, Jürgen</name>
</author>
<author>
<name>Meekan, Mark G</name>
</author>
<author>
<name>Eguíluz, Víctor M</name>
</author>
<author>
<name>Hussain, Muhammad Mustafa</name>
</author>
<author>
<name>Shamim, Atif</name>
</author>
<author>
<name>Liao, Hanguang</name>
</author>
<author>
<name>Srivastava, Mani</name>
</author>
<author>
<name>Saha, Swapnil Sayan</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<author>
<name>Zhang, Xiangliang</name>
</author>
<author>
<name>Ooi, Boon S</name>
</author>
<author>
<name>Holton, Mark</name>
</author>
<author>
<name>Hopkins, Lloyd W</name>
</author>
<author>
<name>Jin, Xiaojia</name>
</author>
<author>
<name>Gong, Xun</name>
</author>
<author>
<name>Quintana, Flavio</name>
</author>
<author>
<name>Tovasarov, Adylkhan</name>
</author>
<author>
<name>Tasmagambetova, Assel</name>
</author>
<author>
<name>Duarte, Carlos M</name>
</author>
<id>https://hdl.handle.net/1721.1/164679</id>
<updated>2026-02-01T07:32:54Z</updated>
<published>2023-06-26T00:00:00Z</published>
<summary type="text">Wearable sensors for monitoring marine environments and their inhabitants
Kaidarova, Altynay; Geraldi, Nathan R; Wilson, Rory P; Kosel, Jürgen; Meekan, Mark G; Eguíluz, Víctor M; Hussain, Muhammad Mustafa; Shamim, Atif; Liao, Hanguang; Srivastava, Mani; Saha, Swapnil Sayan; Strano, Michael S; Zhang, Xiangliang; Ooi, Boon S; Holton, Mark; Hopkins, Lloyd W; Jin, Xiaojia; Gong, Xun; Quintana, Flavio; Tovasarov, Adylkhan; Tasmagambetova, Assel; Duarte, Carlos M
Human societies depend on marine ecosystems, but their degradation continues. Toward mitigating this decline, new and more effective ways to precisely measure the status and condition of marine environments are needed alongside existing rebuilding strategies. Here, we provide an overview of how sensors and wearable technology developed for humans could be adapted to improve marine monitoring. We describe barriers that have slowed the transition of this technology from land to sea, update on the developments in sensors to advance ocean observation and advocate for more widespread use of wearables on marine organisms in the wild and in aquaculture. We propose that large-scale use of wearables could facilitate the concept of an ‘internet of marine life’ that might contribute to a more robust and effective observation system for the oceans and commercial aquaculture operations. These observations may aid in rationalizing strategies toward conservation and restoration of marine communities and habitats.
</summary>
<dc:date>2023-06-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Operational Fuel Inefficiency in Cruise Flight: A Worldwide Geospatial Analysis</title>
<link href="https://hdl.handle.net/1721.1/164678" rel="alternate"/>
<author>
<name>Trávník, Marek</name>
</author>
<author>
<name>Hansman, R. John</name>
</author>
<id>https://hdl.handle.net/1721.1/164678</id>
<updated>2026-02-01T03:01:19Z</updated>
<published>2026-01-30T00:00:00Z</published>
<summary type="text">Operational Fuel Inefficiency in Cruise Flight: A Worldwide Geospatial Analysis
Trávník, Marek; Hansman, R. John
</summary>
<dc:date>2026-01-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Low-Cost Deep Learning for Building Detection with Application to Informal Urban Planning</title>
<link href="https://hdl.handle.net/1721.1/164676" rel="alternate"/>
<author>
<name>González, Lucas</name>
</author>
<author>
<name>Toutouh, Jamal</name>
</author>
<author>
<name>Nesmachnow, Sergio</name>
</author>
<id>https://hdl.handle.net/1721.1/164676</id>
<updated>2026-04-14T03:38:34Z</updated>
<published>2026-01-09T00:00:00Z</published>
<summary type="text">Low-Cost Deep Learning for Building Detection with Application to Informal Urban Planning
González, Lucas; Toutouh, Jamal; Nesmachnow, Sergio
This article studies the application of deep neural networks for automatic building detection in aerial RGB images. Special focus is put on accuracy robustness in both well-structured and poorly planned urban scenarios, which pose significant challenges due to occlusions, irregular building layouts, and limited contextual cues. The applied methodology considers several CNNs using only RBG images as input, and both validation and transfer capabilities are studied. U-Net-based models achieve the highest single-model accuracy, with an Intersection over Union (&#119868;⁢&#119900;⁢&#119880;) of 0.9101. A soft-voting ensemble of the best U-Net models further increases performance, reaching a best ensemble &#119868;⁢&#119900;⁢&#119880; of 0.9665, improving over state-of-the-art building detection methods on standard benchmarks. The approach demonstrates strong generalization using only RGB imagery, supporting scalable, low-cost applications in urban planning and geospatial analysis.
</summary>
<dc:date>2026-01-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>When the Psyche and the 'Net Collide: Sources of and potential methods for preventing Bad Behavior Online</title>
<link href="https://hdl.handle.net/1721.1/164675" rel="alternate"/>
<author>
<name>Wedeman, Sara</name>
</author>
<author>
<name>Clark, David D</name>
</author>
<id>https://hdl.handle.net/1721.1/164675</id>
<updated>2026-02-11T15:35:02Z</updated>
<published>2026-01-29T00:00:00Z</published>
<summary type="text">When the Psyche and the 'Net Collide: Sources of and potential methods for preventing Bad Behavior Online
Wedeman, Sara; Clark, David D
With the emergence of social networking has come a range of harmful and malicious behaviors online, including disinformation, cyberbullying, and sextortion among others. These behaviors arise from a number of causes, including the incentives of the providers of the social networking platforms and the technical affordances of those platforms, which in some cases facilitate these abuses. This report sheds light on the causes and possible mitigations of these behaviors through the lens of behavioral psychology. Results from psychological research suggest that these abuses play on specific human attributes. To design effective mitigations, it is crucial that these human attributes be understood. This report draws on literature from psychology research to outline the important human behavioral attributes, relates these to some of the important affordances found in social networking applications, and suggests possible approaches that can damp the bad behavior we observe online.
This is the final report for an NSF-sponsored study of psychology literature related to the online experience, and the drivers and possible mitigations of bad behavior online.
</summary>
<dc:date>2026-01-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Systems of Visualization for Musical Futures</title>
<link href="https://hdl.handle.net/1721.1/164673" rel="alternate"/>
<author>
<name>Naseck, Perry</name>
</author>
<id>https://hdl.handle.net/1721.1/164673</id>
<updated>2026-01-30T03:24:59Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Systems of Visualization for Musical Futures
Naseck, Perry
This thesis investigates how large-scale visual systems can communicate the presence, agency, and foresight of improvising musical agents–human and AI–during live performance. We propose a framework for manifesting AI collaborators on stage through five principles: musical transparency, live improvisational reactivity, demonstrated virtuosity, communication for collaboration, and visual fit. Two public performances operationalize these ideas: an addressable-light sculpture that renders harmonic space, and a stage-sized kinetic sculpture built from novel, low-cost Generic Pan Tilt fixtures that visualize the AI’s planned “musical futures.” The latter combines a real-time, MIDI-conditioned, Transformer-based hand-motion model with deterministic, pattern-based mappings that signal states such as resting and regeneration. Audience surveys indicate that viewers perceived links between musical turns and kinetic gestures while requesting clearer explanatory cues. We document the open-source hardware, firmware, and control protocols of the Generic Pan Tilt platform and reflect on design tradeoffs for accessibility, reliability, and expressivity. Finally, we outline a real-time analysis toolchain–motif detection, parallelism, and continuous energy/tension estimators–that emits OSC triggers for lighting, media, kinetic, and spatial-audio systems, enabling reactive shows beyond timecode. Together, these systems advance performable visualizations of human-improvised and AI-driven musical futures.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design Rules for LLM-Generated Code: A RealWorld Case Study</title>
<link href="https://hdl.handle.net/1721.1/164672" rel="alternate"/>
<author>
<name>Lawrence, Jennifer M.</name>
</author>
<id>https://hdl.handle.net/1721.1/164672</id>
<updated>2026-01-30T03:24:56Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Design Rules for LLM-Generated Code: A RealWorld Case Study
Lawrence, Jennifer M.
This thesis conducts a case study exploring the interaction between software design, extensibility, and LLM code generation. The central problem we investigate is whether LLMs violate software design principles in ways that introduce bugs and ultimately hinder extensibility. We examine several repositories belonging to the RealWorld collection, a project that demonstrates combinations of frameworks, database, and programming languages for building full stack web apps modeled on an existing social media application. We create a concept-based implementation of the RealWorld API. Concept Design defines software systems in terms of the abstract purposes and relationships of self-contained units of functionality. It enforces stringent design standards and aims to aid humans better understand complex software behavior. To test code extensibility, we develop three phases of new functionality to be added to the RealWorld API. Each phase is intended to mimic real-world software development, adding functionality that is commonly found in social media platforms while increasing nuance and complexity. The code for these extensions is generated by an AI agent, then reviewed by a human coder who classifies and fixes any bugs. In this study, we examine how LLMs interact with software paradigms like Concept Design, the kinds of design violations they produce, and whether these violations correlate with bugs that impede extensibility.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cognify: An On-Device, AI-powered Learning Assistant</title>
<link href="https://hdl.handle.net/1721.1/164671" rel="alternate"/>
<author>
<name>Huang, Siyong</name>
</author>
<id>https://hdl.handle.net/1721.1/164671</id>
<updated>2026-01-30T03:24:55Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Cognify: An On-Device, AI-powered Learning Assistant
Huang, Siyong
Large Language Models (LLMs) have proven highly effective for a wide range of natural language processing tasks, but their size and compute requirements often restrict their use to powerful cloud-based infrastructures. In recent years, significant progress has been made in shrinking LLMs while maintaining performance levels comparable to much larger models. We are approaching the point where the capabilities of massive, multi-billion parameter models can be realistically replicated on consumer-grade devices. This thesis builds upon that foundation by developing an AI-powered note-taking application that runs entirely offline, using only the compute resources available on a personal laptop. The application is designed to listen to lectures alongside the student and provide support in real-time—through transcription, notes generation, and enabling context-aware search. Achieving this level of interactivity locally introduces challenges in reducing end-to-end latency, which this project addresses through both model-level optimizations and the design of efficient prompting and inference algorithms. A demo of the app can be found on Youtube.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Performance Analysis of the Apple AMX Matrix Accelerator</title>
<link href="https://hdl.handle.net/1721.1/164670" rel="alternate"/>
<author>
<name>Zhou, Jonathan</name>
</author>
<id>https://hdl.handle.net/1721.1/164670</id>
<updated>2026-01-30T03:24:55Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Performance Analysis of the Apple AMX Matrix Accelerator
Zhou, Jonathan
Apple Silicon integrates a dedicated Apple Matrix Coprocessor (AMX) that executes outer-product style computations with high throughput, but its public programming model remains largely hidden behind the Accelerate framework. This thesis turns AMX into a more predictable and practical target by combining (i) empirical throughput characterization, (ii) a case study on AMX specific matrix multiplication (GEMM) design, and (iii) an interpretable rule-based latency model that predicts cycle counts for short AMX instruction sequences. First, microbenchmarks quantify AMX load/store and compute limits across matrix and vector modes and data types. We analyze throughput in both GFLOPS and AMX instructions per cycle, and also observe output register based throughput limitations. Second, we develop an in-place GEMM that uses masked outer products and strategically overlapping tiles to avoid scratch buffers used by Accelerate, outperforming Accelerate while preserving simplicity. Third, we introduce a compact latency model that decomposes cycles into per-instruction BaseTime, symmetric SwitchLatency for instruction changes, and instruction FullLatency (data dependency) terms. Fitted with non-negative coordinate descent on length-2 loops and validated on length-3 sequences via a lightweight loop simulation, the model obtains reasonably high accuracy while remaining helpful for those trying to understand the architecture.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Weak Identification and Network Measurement Error in Peer Effects Estimation</title>
<link href="https://hdl.handle.net/1721.1/164669" rel="alternate"/>
<author>
<name>Wang, William Wei</name>
</author>
<id>https://hdl.handle.net/1721.1/164669</id>
<updated>2026-01-30T03:06:54Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Weak Identification and Network Measurement Error in Peer Effects Estimation
Wang, William Wei
The growing availability of social network data has enabled a surge of research on social interactions. In particular, peer effects, once considered unidentifiable, have now been shown to be identified given knowledge of the network structure. Despite this positive result, questions remain about the existence and nature of peer effects, due to concerns about identification strength and the reliability of network data. This work investigates two key threats to the estimation of peer effects: weak identification and network measurement error. We show that weak instrument problems arise in moderately dense networks due to rapid averaging, leading to slow convergence rates even when estimators remain consistent. On the measurement error side, we show that additive edge weight errors can be mitigated in such networks due to the same averaging phenomena, but the error remains a relevant threat to consistency in sparser networks. We further demonstrate that when both issues are present, the resulting estimators exhibit non-vanishing bias, suggesting that the combined effect of weak instruments and measurement error can be more severe than either problem in isolation. Overall, our results aim to clarify how these non-standard estimation challenges impact our ability to study peer effects using network data.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Seeing Beyond Limits with Physics-Informed Priors</title>
<link href="https://hdl.handle.net/1721.1/164668" rel="alternate"/>
<author>
<name>Liu, Yang</name>
</author>
<id>https://hdl.handle.net/1721.1/164668</id>
<updated>2026-01-30T03:06:34Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Seeing Beyond Limits with Physics-Informed Priors
Liu, Yang
Conventional imaging systems are limited by dimensionality and visibility: standard sensors capture only two-dimensional data, while light diffuses or scatters across surfaces and through complex media. This dissertation reformulates imaging as an interplay of optical encoding and neural decoding. It models forward physical processes and iteratively refines them using deep denoisers. By embedding physics-informed priors into this optimization, it aims to surpass conventional limits in dimensionality and visibility. First, I develop Privacy Dual Imaging using an ambient light sensor. This approach tackles both dimensionality and visibility challenges when imaging with a single-point, non-imaging component on smart devices. Inspired by 1984’s “Big Brother” telescreen, I demonstrate how subtle light intensity fluctuations can reveal unseen image information; however, the goal is to highlight privacy concerns, not exploit them. It addresses two visibility limits—pixel-less and lens-less imaging—by using the screen as a spatial modulator and exploiting involuntary motion to create a virtual pinhole effect. A quantized, physics-informed prior improves reconstruction from heavily quantized sensor measurements. Second, I propose Snapshot Compressive Imaging (SCI) augmented with deep plug-and-play physics-informed priors to overcome the dimensionality limit of 2D sensors. SCI compressively encodes multiple temporal, spectral, or angular frames into a single measurement. A deep plug-and-play prior algorithm introduces high-dimensional priors learned from images and videos into the iterative reconstruction process, improving fidelity, speed, and flexibility. Experiments show notable gains in reconstruction quality and efficiency across different SCI datasets, including largeformat 4K UHD scenarios. Third, I introduce Rank-Reduced physics-informed priors, showing that large pretrained AI models—especially diffusion models—can act as general visual priors across both dimensionality and visibility challenges. A relax-then-tighten strategy handles ill-conditioning by applying truncated singular value decomposition to reduce rank deficiencies, followed by a Stable Diffusion refiner (SDEdit) plug-and-play prior that constrains reconstructions to valid image spaces. Simulations and passive non-line-of-sight imaging experiments verify the approach’s stability and effectiveness. Physics-informed priors promise to extend the boundaries of imaging, enabling us to see beyond current dimensionality and visibility limits and to unlock new applications from macro-scale to micro-scale observations.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimizing Large Language Models from a Data SystemsPerspective</title>
<link href="https://hdl.handle.net/1721.1/164667" rel="alternate"/>
<author>
<name>Chen, Peter Baile</name>
</author>
<id>https://hdl.handle.net/1721.1/164667</id>
<updated>2026-01-30T03:24:54Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Optimizing Large Language Models from a Data SystemsPerspective
Chen, Peter Baile
Strong retrieval and reasoning capabilities are essential for large language models (LLMs) to effectively handle a broad spectrum of downstream tasks, such as open-domain question answering and solving math or science problems. While current LLM-based frameworks achieve strong performance on complex retrieval and reasoning tasks, they do so at a high computational cost. Additionally, they often lack structured, systematic problem-solving strategies, leading to unexpected failures. In particular, these models typically operate in an iterative, online, and isolated fashion—failing to exploit relationships across data sources, opportunities for offline computation, and the benefits of reusability—resulting in less-than-optimal outcomes. In contrast, traditional data management systems are engineered for both efficiency and accuracy, with careful coordination across all stages of the query pipeline. Inspired by these principles, this work proposes novel approaches to improve LLMbased retrieval and reasoning by incorporating optimization techniques from data systems. Our evaluation across a range of knowledge- and reasoning-intensive datasets demonstrates significant gains in both accuracy and computational efficiency.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Foundational Abstractions for Quantum Programming</title>
<link href="https://hdl.handle.net/1721.1/164666" rel="alternate"/>
<author>
<name>Yuan, Charles</name>
</author>
<id>https://hdl.handle.net/1721.1/164666</id>
<updated>2026-01-30T03:06:30Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Foundational Abstractions for Quantum Programming
Yuan, Charles
Bringing the promise of quantum computation into reality requires not only building a quantum computer but also correctly programming it to run a quantum algorithm. To obtain asymptotic advantage over classical algorithms for applications including simulation, search, and optimization, quantum algorithms rely on the ability of data in quantum superposition to exhibit phenomena such as interference and entanglement. In turn, an implementation of the algorithm as a program must correctly orchestrate these phenomena in the states of qubits. Otherwise, it would yield incorrect outputs or lose quantum computational advantage.&#13;
&#13;
Given a quantum algorithm, what are the challenges and costs of realizing it as a program that can run on a physical quantum computer? In this thesis, I answer this question by showing how the basic abstractions of programming upon which many quantum algorithms rely – such as data structures and control flow – can fail to work correctly or efficiently on a quantum computer. I then demonstrate how we can leverage insights from research in programming languages to re-invent the software stack – including abstractions, libraries, and compilers – to meet the demands of quantum algorithms. This approach holds out a promise of expressive and efficient tools to program a quantum computer and thereby practically realize its computational advantage.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fabrication of Superconducting Reflectionless Filters for Quantum Microwave Circuits</title>
<link href="https://hdl.handle.net/1721.1/164665" rel="alternate"/>
<author>
<name>Bui, Eric</name>
</author>
<id>https://hdl.handle.net/1721.1/164665</id>
<updated>2026-01-30T03:24:51Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Fabrication of Superconducting Reflectionless Filters for Quantum Microwave Circuits
Bui, Eric
The performance and scalability of superconducting quantum circuits depends critically on the microwave environment. Minimizing signal reflections and suppressing thermal noise are essential for achieving high-fidelity readout and preserving qubit coherence. A significant challenge arises from the use of conventional cryogenic components such as isolators and circulators, which exhibit nonideal out-of-band reflection characteristics. Reflections degrade impedance matching and limit the performance of broadband quantum limited amplifiers. Superconducting implementations of reflectionless microwave filters offer a promising solution to mitigate these issues. The focus of this work is the fabrication and cryogenic characterization of reflectionless filters compatible with superconducting qubit fabrication flows. Devices were implemented on high resistivity silicon substrates using aluminum ground planes, integrated nichrome resistors, and crossovers formed with SiO2 interlayer dielectric. Cryogenic measurements at 20 mK demonstrate high return loss, confirming the viability of these filters for co-fabrication with traveling-wave parametric amplifiers (TWPAs) and circuit quantum electrodynamics (cQED) architectures. The filters exhibit low insertion loss in the passband to maintain quantum measurement efficiency and provide broadband reflection suppression across frequencies relevant to superconducting qubits, offering a scalable way to manage microwave noise in superconducting quantum processors.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>CONDOR: Clinical Ontology-aware Networked Data Organization and Retrieval</title>
<link href="https://hdl.handle.net/1721.1/164664" rel="alternate"/>
<author>
<name>Dongo Aguirre, Gyalpo Melchisedeck</name>
</author>
<id>https://hdl.handle.net/1721.1/164664</id>
<updated>2026-01-30T03:24:23Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">CONDOR: Clinical Ontology-aware Networked Data Organization and Retrieval
Dongo Aguirre, Gyalpo Melchisedeck
Until now, state-of-the-art research into AI-driven clinical workflows has been confined to proprietary, closed-source systems from vendors like Epic and Oracle, or private experiments like Stanford’s ChatEHR, creating a critical barrier to academic innovation. This thesis introduces CONDOR, the first fully open-source and replicable research environment designed to simulate an agentic, conversational AI interacting with a high-fidelity Electronic Health Record (EHR). By integrating an open-source, FHIR-native EHR (Medplum) with a complex, realistic public clinical dataset (MIMIC-IV FHIR), CONDOR provides a foundational testbed that has been previously unavailable to the research community. The framework’s primary contribution is a novel alignment and evaluation methodology that adapts the principles of SelfCite to the clinical domain. We propose a ‘ClinicalConfidence‘ score to quantify the trustworthiness of generated statements and programmatically generate a high-quality preference dataset for alignment using Simple Preference Optimization (SimPO). We compare a standard vector-based Retrieval-Augmented Generation (RAG) baseline against a more advanced GraphRAG architecture that leverages a two-tiered knowledge graph of patient data and medical ontologies. Our results demonstrate that the full CONDOR system, combining GraphRAG with SimPO alignment, significantly improves citation quality and verifiability, establishing a new open-source benchmark for the development of safe and reliable clinical AI.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multi-Stage LLM Reasoning for Automated Detection and Classification of High-Impact Misinformation</title>
<link href="https://hdl.handle.net/1721.1/164663" rel="alternate"/>
<author>
<name>Nair, Anushka Manchanda</name>
</author>
<id>https://hdl.handle.net/1721.1/164663</id>
<updated>2026-01-30T03:24:50Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Multi-Stage LLM Reasoning for Automated Detection and Classification of High-Impact Misinformation
Nair, Anushka Manchanda
As of 2025, social platforms have become a primary news source, magnifying the reach of misleading content [1]. Exposure to misinformation has been linked to shifts in public attitudes and behavior, including vaccine uptake [2] and voting behaviors [3]. However, current misinformation detection approaches can often focus on a narrow definition of misinformation: factual claims that can be clearly judged as true or false. However, recent research suggests the problem lies elsewhere: overt falsehoods (“vaccines contain microchips”) can carry little harm, while technically accurate but decontextualized narratives can be more influential. Allen et al. (2024) [4] found that factually accurate ”vaccine-skeptical” content had a much greater impact on vaccine hesitancy than misinformation flagged by fact-checkers. These narratives can work by omitting information, misleading framing, or cherry-picked evidence, forms of manipulation that can elude traditional fact-checking. Though professional fact-checkers are often able to recognize these tactics and the broader context of information, they cannot keep pace with the volume of online content. This thesis designs a Large Language Model (LLM) based pipeline meant to partner with, rather than replace, human fact checkers. The system decomposes content into its explicit and implicit claims, rhetorical tactics, and the “missing context” questions it raises; retrieves evidence from fact-check databases and reliable sources; and synthesizes grounded explanations while assigning calibrated harm scores to guide triage. Evaluated on fact-checked tweets, the pipeline matched expert judgments in 92.6% of cases where experts agreed, and flagged for review posts where experts disagreed, a gray zone requiring human judgment. The system’s explanations ranked higher than crowdsourced Community Notes in helpfulness, clarity, and trustworthiness when assessed by an LLM, and harm evaluations aligned with human reviewers in 87.5% of cases, enabling prioritization of content with greatest potential impact. Despite constraints of sample size and processing latency, the results demonstrate the feasibility of a human–AI workflow that treats disagreement as a signal and directs scarce attention towards high-impact misinformation that current automated systems can miss.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Learning Simple Chemical Heuristics to Model and Discover Materials</title>
<link href="https://hdl.handle.net/1721.1/164662" rel="alternate"/>
<author>
<name>Ma, Andrew</name>
</author>
<id>https://hdl.handle.net/1721.1/164662</id>
<updated>2026-01-30T03:07:04Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Learning Simple Chemical Heuristics to Model and Discover Materials
Ma, Andrew
Computational approaches have long played an important role in the field of materials science, driving both the scientific study of materials’ fundamental properties and the design of materials for technological applications. Currently, mainstream methods in computational materials science typically rely on either first-principles calculations or deep learning models. In this thesis, we take a different direction by developing remarkably simple data-driven models for predicting fundamental properties of materials, including electronic topology, metallicity, and band gap. These models take the form of highly interpretable chemical heuristics. A key finding of this work is the surprising result that electronic topology diagnosis – often regarded as a highly complex task – can, in fact, be performed heuristically using a simple and intuitive model. We further integrate this model into a workflow for discovering new topological materials. Altogether, this work revisits the classic idea of chemical heuristics through a modern data-driven lens, shedding new light on fundamental problems in materials science.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Spatial Emission and Polarization Control in Integrated Photonics for Optical-Trapping and Trapped-Ion Systems</title>
<link href="https://hdl.handle.net/1721.1/164661" rel="alternate"/>
<author>
<name>Sneh, Tal</name>
</author>
<id>https://hdl.handle.net/1721.1/164661</id>
<updated>2026-01-30T03:24:49Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Spatial Emission and Polarization Control in Integrated Photonics for Optical-Trapping and Trapped-Ion Systems
Sneh, Tal
Recent advances in silicon photonics have yielded impressive results in fields including biophotonic optical tweezers and trapped-ion quantum systems. However, the majority of these demonstrations, while offering advantages in size, cost, and dense integration, lag behind their bulk-optic counterparts, limited by a lack of critical advanced functionality such as spatial control of light in the near field or polarization control at visible wavelengths. This thesis addresses this gap by designing and experimentally demonstrating the first, to the best of our knowledge, cell experiments using single-beam integrated optical tweezers, chip-based 3D printers, and integrated polarization rotators and splitters at blue wavelengths. First, we demonstrate optical trapping and tweezing of microspheres using a nearfield-focusing integrated optical phased array, at a standoff distance over two orders of magnitude larger than prior integrated demonstrations. We then use this system to perform the first cell experiments using single-beam integrated optical tweezers. Second, we use a tunable integrated optical phased array operating at red wavelengths to print designs in a visible-light-curing resin, demonstrating the first chip-based 3D printer. Third, we design and experimentally demonstrate the first integrated polarization rotators and splitters operating at blue wavelengths, enabling polarization control on chip for sophisticated integrated manipulation of trapped-ion and neutral-atom quantum systems. Finally, we develop key polarization-diverse integrated-photonics devices and utilize them to implement a variety of integrated-photonics-based polarization-gradient-cooling systems, culminating in the first demonstration of polarization-gradient cooling of a trapped ion by an integrated-photonics-based system.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Language Modeling from Visually Grounded Speech</title>
<link href="https://hdl.handle.net/1721.1/164660" rel="alternate"/>
<author>
<name>Lai, Cheng-I Jeff</name>
</author>
<id>https://hdl.handle.net/1721.1/164660</id>
<updated>2026-01-30T03:06:52Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Language Modeling from Visually Grounded Speech
Lai, Cheng-I Jeff
Recent advancements in spoken language processing have significantly reduced automatic speech recognition (ASR) error rates, driven by large-scale supervised training on paired speech–text data and, more recently, self-supervised pre-training on unpaired speech and audio. These methods have facilitated robust transfer learning across diverse speech and audio tasks. However, fully leveraging multimodal inputs, particularly visual context, remains underexplored. This thesis addresses this gap by developing novel language modeling techniques directly from visually grounded speech. We first introduce the Audio-Visual Neural Syntax Learner (AV-NSL), an unsupervised parser that recovers constituency trees directly from raw speech paired with images, demonstrating how visual context effectively bootstraps grammar induction without textual supervision. Next, we investigate Audio-Visual Word Discovery for Speech Translation, using the Fisher Spanish–English corpus to train a series of speech-to-speech translation models based on pseudo-word units discovered via audio-visual grounding. This study highlights that simplistic acoustic tokens and limited training data degrade re-synthesis and translation quality, underscoring two crucial missing ingredients: richer semantic tokens and large-scale training. Guided by these insights, we present Audio-Visual Gemma (AV-Gemma), a family of multimodal foundation models that condition jointly on images and learned semantic speech tokens. At scale, AV-Gemma generates visually coherent spoken captions and transfers robustly to tasks such as video-to-speech generation and spoken visual question answering, significantly advancing multimodal spoken-language processing.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>ALPACA: An Algorithmic Pipeline for Automated&#13;
Contour Annotation of Carnatic Music:&#13;
A Dynamic Programming Framework for Pitch Segmentation and Note Transcription</title>
<link href="https://hdl.handle.net/1721.1/164659" rel="alternate"/>
<author>
<name>Parthasarathi, Sruthi</name>
</author>
<id>https://hdl.handle.net/1721.1/164659</id>
<updated>2026-01-30T03:24:45Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">ALPACA: An Algorithmic Pipeline for Automated&#13;
Contour Annotation of Carnatic Music:&#13;
A Dynamic Programming Framework for Pitch Segmentation and Note Transcription
Parthasarathi, Sruthi
In recent years, a wide range of computational techniques have been developed to extract information from recorded performances of Western music. However, these methods often achieve limited success when applied to non-Western musical traditions. Carnatic music, in particular, poses unique challenges due to the absence of a standardized notation system and the lack of a consistent mapping between frequency bands and note categories. This project introduces a dynamic programming–based transcription framework, incorporating novel methods for label estimation, contour segmentation, and related subtasks, and establishes the foundations for end-to-end automatic transcription of this art form.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modeling Diverse Treatment Policies from Observational Health Data</title>
<link href="https://hdl.handle.net/1721.1/164658" rel="alternate"/>
<author>
<name>Ejilemele, Abe</name>
</author>
<id>https://hdl.handle.net/1721.1/164658</id>
<updated>2026-01-30T03:24:53Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Modeling Diverse Treatment Policies from Observational Health Data
Ejilemele, Abe
Learning policies for real world tasks often requires modeling human behavior, especially in domains like healthcare and driving. In these settings, skills are learned from expert human demonstrations, but such data are typically multimodal, violating the common single expert assumption. We study sequential clinical treatment decision making in the offline imitation learning setting, where environment interaction is prohibited, reflecting the challenges of experimentation in safety critical domains. Existing methods for multi expert offline imitation learning often restrict the latent space, underspecify its structure, or omit objective terms that prevent latent collapse and encourage behavior discovery. We propose a fully offline approach that addresses these shortcomings and improves learning from multi expert demonstrations through modifications to the formulation of the latent approximate posterior and the model architecture. We suggest that our method is more robust to real world settings where the true number of demonstrators may not be known. We also incorporate an occupancy matching term into our objective that injects awareness of the rollout distribution over trajectories into our behavior cloning objective. We evaluate our method against baselines on both simulated multi expert demonstrations from an extended S-CVSim and real world demonstrations from MIMIC. Our approach achieves consistently higher next step action prediction and behavior discovery performance. While ground truth expert policies are unavailable for MIMIC, visual analysis shows our method uncovers clinically meaningful variations in expert strategies, reflecting treatment population diversity.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Scalable Assembly of General Objects</title>
<link href="https://hdl.handle.net/1721.1/164657" rel="alternate"/>
<author>
<name>Tian, Yunsheng</name>
</author>
<id>https://hdl.handle.net/1721.1/164657</id>
<updated>2026-01-30T03:06:32Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Scalable Assembly of General Objects
Tian, Yunsheng
In this thesis, I present a scalable system towards fully automated and flexible robotic assembly that generalizes over diverse geometries and complex structures. Most real-world objects are assemblies composed of multiple parts. Assembly presents significant challenges for robots to execute long-horizon, contact-rich manipulation with both reliability and generalization. However, most manufacturing facilities today still rely heavily on manually programmed assembly lines, which require significant labor, time, and setup costs yet offer no flexibility to object variations. My proposed system synergizes global multi-step planning with local reactive learning-based control to enable generalizable and precise assembly. Such an integrated paradigm effectively leverages the best of both worlds, accomplishing results that neither planning nor learning could achieve alone. For planning, I leverage guidance from physical simulation and learned feasibility networks to efficiently search for part sequences, precise motions, and stable grasps for dual-arm robots over long horizons. For learningbased control, I train robust policies via reinforcement learning for submillimeter-level insertion across different part geometries, assembly paths, and grasp poses. I introduce and open-source the largest-scale assembly dataset to date and demonstrate my system’s generalization on thousands of simulated assemblies as well as through end-to-end real robot experiments. By integrating planning and learning, I showcase the first system to achieve complete and generalizable real-world multi-part assembly without domain knowledge or human demonstrations. Although the system plans and learns purely in simulation, it transfers zero-shot to the real world and achieves 80% successful steps. Finally, I will share insights that further scale up robotic assembly and opportunities to extend to general manipulation, and discuss future directions to equip general-purpose robots with multi-step, precise manipulation capabilities.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Towards a Modular Superconducting Quantum Processor&#13;
using Chiral Waveguide Quantum Electrodynamics</title>
<link href="https://hdl.handle.net/1721.1/164656" rel="alternate"/>
<author>
<name>Yankelevich, Beatriz</name>
</author>
<id>https://hdl.handle.net/1721.1/164656</id>
<updated>2026-01-30T03:24:46Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Towards a Modular Superconducting Quantum Processor&#13;
using Chiral Waveguide Quantum Electrodynamics
Yankelevich, Beatriz
As the field of superconducting quantum computing advances, networking qubits within a single system becomes essential for building modular processors. Modularity allows the system to circumvent scalability constraints and enable architectures and computational schemes that exploit non-local connectivity to enhance processing capabilities. This work proposes non-local entanglement generation methods based on the theory of chiral quantum waveguide dynamics, which is the quantum-optical framework that describes systems of atoms coupled non-reciprocally to a continuum of modes. We leverage these effects to design a chiral communication module composed of multiple superconducting qubits, capable of both directional single photon routing and the realization of chiral, driven-dissipative entanglement protocols.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fine-tuning Boltz for Antibody-Antigen Binding&#13;
Prediction</title>
<link href="https://hdl.handle.net/1721.1/164655" rel="alternate"/>
<author>
<name>Kim, Ji Won</name>
</author>
<id>https://hdl.handle.net/1721.1/164655</id>
<updated>2026-01-30T03:24:32Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Fine-tuning Boltz for Antibody-Antigen Binding&#13;
Prediction
Kim, Ji Won
Accurate prediction of antibody-antigen binding is a central challenge in computational immunology. Its direct implication for therapeutic antibody design and vaccine development has made it one of the most rapidly growing fields. Recent advances in protein language models and structure prediction have provided new tools for modeling, yet these approaches often fall short in capturing the fine-grained features that drive binding specificity in antibody and antigens. This thesis evaluates multiple strategies for improving predictive performance. First, we investigate a custom multiple sequence alignment (MSA) experiment. Standard Boltz-2 training relies on MSAs from broad protein databases, which capture global diversity but under-represent lineage-specific constraints. To address this, we constructed antibody-specific MSAs to test whether restricting the search space to antibody repertoires improves model learning. Unfortunately, gains in downstream binding prediction were limited, suggesting that further work needs to be done in training models for specific databases in the first place. Our second line of investigation focused on fine-tuning Boltz-2, a generative structural foundation model, using curated antibody–antigen data. By leveraging Boltz-2’s internal sequence embeddings, we trained a predictive model for binding affinity. This approach yielded stronger ROC performance compared to baseline models, achieving a validation AUROC of 0.645, demonstrating the advantages of structural generative priors for antibody–antigen binding prediction.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Deterministic Circuit Range Avoidance is (Likely) Intractable</title>
<link href="https://hdl.handle.net/1721.1/164654" rel="alternate"/>
<author>
<name>Ilango, Rahul</name>
</author>
<id>https://hdl.handle.net/1721.1/164654</id>
<updated>2026-01-30T03:24:47Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Deterministic Circuit Range Avoidance is (Likely) Intractable
Ilango, Rahul
Circuit Range Avoidance (denoted Avoid) is a computational problem where, given a Boolean circuit with more output bits than input bits, one must output a string outside of the range of the circuit. A simple counting argument implies that such a string must always exist and also guarantees that outputting a uniformly random string is correct with good probability. A natural question is whether this can be derandomized: does there exist an efficient deterministic algorithm for Avoid? We give the first evidence that deterministically solving Avoid is intractable. We show that there is no polynomial-time algorithm for Avoid under plausible assumptions in complexity theory and cryptography. Specifically, our assumptions are that NP ≠ coNP and that subexponentially-secure indistinguishability obfuscation exists.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Learning to Tackle Task Variations in Control - A Transportation Context</title>
<link href="https://hdl.handle.net/1721.1/164653" rel="alternate"/>
<author>
<name>Jayawardana, Vindula Muthushan</name>
</author>
<id>https://hdl.handle.net/1721.1/164653</id>
<updated>2026-01-30T03:06:23Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Learning to Tackle Task Variations in Control - A Transportation Context
Jayawardana, Vindula Muthushan
Real-world control tasks are messy and often exhibit task variations. Practical solutions to these problems must exhibit generalization across task variations. For example, in the task of controlling traffic signals, control strategies must adapt to different intersection topologies (the variations), each with distinct dynamics. In this thesis, we consider the challenge of coping with task variations in the context of transportation problems, specifically in roadway interventions where many such variations are both common and imperative to handle. We develop machine learning techniques to address three key challenges: 1) quantify the impact of task variations in control, 2) model them to align with the real world, and 3) optimize in the presence of them. To this end, we begin with a large-scale case study of cooperative eco-driving and illustrate how explicitly modeling task variations can surface otherwise overlooked insights. Building on this, we argue for the necessity of formally incorporating task variations into problem specifications, emphasizing that task underspecification due to loosely defined task variations can severely impair decision-making. We then introduce a contextual reinforcement learning algorithm capable of leveraging the structure of task variations to generalize effectively in cooperative eco-driving with autonomous vehicles. We also present IntersectionZoo, a benchmark designed to promote the development of learning algorithms that generalize by exploiting task variation structures, thus standardizing progress in the field. Last, we explore task variation modeling through a generative modeling lens, using human driver behavior modeling as a case study. Overall, this thesis lays the groundwork for robust control methods by leveraging machine learning to tackle task variations, specifically in roadway intervention designs.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>An Empirical Evaluation of LLMs for the Assessment of Subjective Qualities</title>
<link href="https://hdl.handle.net/1721.1/164652" rel="alternate"/>
<author>
<name>Ranade, Esha</name>
</author>
<id>https://hdl.handle.net/1721.1/164652</id>
<updated>2026-01-30T03:24:42Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">An Empirical Evaluation of LLMs for the Assessment of Subjective Qualities
Ranade, Esha
Large Language Models (LLMs) have achieved remarkable success in natural language processing tasks and are increasingly being used for language generation. Significant advancements in this field have unlocked capabilities that enable their adoption in sophisticated roles, including acting as evaluators or "judges" of text for various attributes such as factuality, relevance, fluency, and reasoning quality. However, their understanding and ability to assess subjective attributes, such as the level of formality in a piece of writing, and produce content matching these subjective attributes remains unclear and underexplored. This research develops a methodology to study how LLMs evaluate subjective attributes. It has three primary contributions: (i) a reproducible user study to generate human-annotated labels for different attributes, (ii) an analysis of the extent to which different LLMs provide subjective labels aligned with human annotators, and (iii) an analysis of the extent to which LLMs generate content aligned with specified intended subjective labels, relative to humans. The user study and the analyses have been conducted both with and without a reference scale. The scale itself, the survey design, and the evaluation questions have all undergone multiple rounds of iteration informed by study tester feedback to improve clarity, consistency, and reliability for the final study. Comparisons between human-generated ratings and LLM-generated ratings for both human-generated content and LLM-generated content reveal the extent to which LLMs align with human judgment, providing insights into their capabilities and limitations. While humans typically do better in their roles, LLMs are able to attain reliably high levels of success in producing and judging text, despite tending to err on the more-formal side. Both groups’ performance increases significantly with the aid of a formalized reference scale. Across the suite of models tested, OpenAI’s GPT family leads overall performance, with Anthropic’s Claude and Meta’s LLaMA series showing notable strengths in specific formality ranges. Although this work focuses on the formality attribute of text, the methodology developed can be used to evaluate other subjective qualities of text, such as conciseness, usefulness, or persuasiveness. Ultimately, these findings may guide future efforts to fine-tune LLMs to produce text that more precisely matches the desired stylistic or ethical standards.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Accelerating Burst Parallelism of SigmaOS processes with CRIU</title>
<link href="https://hdl.handle.net/1721.1/164651" rel="alternate"/>
<author>
<name>Tang, Frederick</name>
</author>
<id>https://hdl.handle.net/1721.1/164651</id>
<updated>2026-01-30T03:24:29Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Accelerating Burst Parallelism of SigmaOS processes with CRIU
Tang, Frederick
σOS is a multi-tenant cloud operating system designed to integrate the agility of serverless environments with the interactivity of microservices. A goal of achieving this integration is the ability to start new instances of server processes quickly. However, σOS only handles σcontainer initialization, and does not assist with runtime and app initialization costs. One approach to overcome this challenge is to checkpoint processes using Checkpoint/Restore in Userspace (CRIU). CRIU is a linux toolset which can start new server instances by restoring them from a saved checkpointed state, avoiding the full cost of reinitialization and setup. This thesis introduces σCRIU, which adapts CRIU for burst-parallel spawning of microservices in σOS. σCRIU implements a number of optimizations: compressing checkpointed proc metadata to reduce network communication costs, implementing demand-paging using a lazy page service, and caching kernel metadatadata to reduce CRIU’s restore operation latency. These optimizations allow σCRIU to start new microservices on remote machines quickly while still making use of CRIU’s existing proven checkpoint and restore technology.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modern methods for causal inference and missing data</title>
<link href="https://hdl.handle.net/1721.1/164650" rel="alternate"/>
<author>
<name>Xia, Eric</name>
</author>
<id>https://hdl.handle.net/1721.1/164650</id>
<updated>2026-01-30T03:06:38Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Modern methods for causal inference and missing data
Xia, Eric
The proliferation of data-driven approaches in a wide array of settings is one of the defining characteristic of the modern era. With this rise, there has been much focus on using data to answer causal questions, e.g. whether A causes a change in B. Furthermore aspects of data collection has given rise to datasets that are often quite messy, sometimes missing important entries. These are both problems that are incredibly relevant to practitioners in a variety of disciplines, including policy-makers looking to make critical decisions that can influence lives of many. On the surface these problems seem quite distinct, yet the literature has highlighted deep connections between these two settings. Indeed, many methods for addressing one question can often be repurposed to address the other. These two settings are quite classical and approaches to address the are still quite so, but there has been great interest recently to develop techniques and algorithms to address them that harness modern developments in statistics and machine learning. This thesis contributes to the literature by providing new methods as well as novel understandings of existing ones.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Visually Accurate Database-Enabled Reconstructions of Scenes (VADERS)</title>
<link href="https://hdl.handle.net/1721.1/164649" rel="alternate"/>
<author>
<name>Gosalia, Mehek</name>
</author>
<id>https://hdl.handle.net/1721.1/164649</id>
<updated>2026-01-30T03:24:39Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Visually Accurate Database-Enabled Reconstructions of Scenes (VADERS)
Gosalia, Mehek
This work introduces a novel pipeline for scene reconstruction that jointly prioritizes semantic accuracy and visual fidelity, addressing a gap in current approaches. Prior pipelines often emphasize either semantic analysis or photorealistic rendering, but rarely both. This method combines scene analysis, segmentation, and retexturing to yield reconstructions that preserve structural semantics, while convincingly reflecting the visual qualities of the original image. The motivation lies in the limitations of existing systems. Existing databaseassisted approaches depend on proprietary datasets that restrict stylistic diversity or using in-the-wild assets. This constrains expressiveness and often produces results that are visually misaligned. Conversely, pipelines optimized for visual realism neglect semantic correctness, generating outputs that may appear plausible but lack categorical or structural grounding. Our framework addresses this by first enforcing semantic accuracy via selecting database assets, then editing those assets to be stylistically faithful to the reference, producing reconstructions that are both interpretable and expressive. We begin with database-assisted scene analysis, using an open-source asset database containing chairs, lamps, sofas, tables, and benches. Input images are depth-mapped, segmented, and parsed into object masks, which are matched to database assets based on semantic labels and visual correspondence. Each asset is broken into semantic segments and rescaled per-component using vision-language model predictions to match the reference object better. Finally the asset is retextured based on the image mask of the reference object in the input image. Evaluation on six diverse scenes—both photographs and artworks—shows the pipeline produces semantically grounded, visually accurate reconstructions under non-research conditions. Future work will focus on expanding the asset database, reducing reliance on proprietary texturing, and releasing an open-source implementation to broaden accessibility.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Designing Planar Silicon Solar Cells for Singlet Fission&#13;
Sensitization</title>
<link href="https://hdl.handle.net/1721.1/164648" rel="alternate"/>
<author>
<name>Wang, Janet Z.</name>
</author>
<id>https://hdl.handle.net/1721.1/164648</id>
<updated>2026-01-30T03:24:48Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Designing Planar Silicon Solar Cells for Singlet Fission&#13;
Sensitization
Wang, Janet Z.
Singlet fission (SF)-sensitized silicon (Si) solar cells offer a path towards surpassing the Shockley-Queisser efficiency limit for single-junction solar cells. However, realizing efficient charge transfer from the SF material to Si remains a significant challenge that requires careful interface engineering. Prior work showed that Si microwire cells sensitized with tetracene (Tc) and a zinc phthalocyanine (ZnPc) donor layer can boost photocurrent and external quantum efficiency (EQE). Planar devices are simpler to fabricate than microwire devices and reproduce the planar geometry of optical test samples to connect studies of the interface to device performance. This thesis integrates modeling and experimental approaches to guide the design of planar SF-sensitized Si solar cells. We developed a fabrication process for planar cells comparing varied oxide passivation layer growth conditions and surface treatments, Si(100) versus Si(111) orientation, and junctions formed by diffusion doping versus ion implantation. Complementary surface photovoltage (SPV) measurements on matching optical stacks show evidence of an illumination-induced transient positive charge density at the Tc/ZnPc/oxide/Si interface, consistent with increased field effect passivation. We find that SPV responses on AlOx/n-Si are dominated by substrate band bending; consequently, SiOx is the preferred passivation to suppress the background and isolate the SPV signals driven by the organics. A drift–diffusion model shows that the diffusion doping (exponential) emitters reduce surface recombination rates compared to ion implantation (Gaussian) emitters. We also show that a positive fixed charge density at the surface enhances short wavelength EQE, with the effect strongest for Gaussian emitters. Together, these results provide practical design rules for planar SF-sensitized Si cells and the study of charge transfer at organic-Si interfaces.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Microsecond Time Synchronization for Computing Fiber&#13;
Networks</title>
<link href="https://hdl.handle.net/1721.1/164647" rel="alternate"/>
<author>
<name>Li, Jenny Y.</name>
</author>
<id>https://hdl.handle.net/1721.1/164647</id>
<updated>2026-01-30T03:24:43Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Microsecond Time Synchronization for Computing Fiber&#13;
Networks
Li, Jenny Y.
We present a microsecond-accurate time synchronization method and time localization system for a sensor network of spatially-separated, low-power Bluetooth nodes, with the goal of integrating this system into thermally-drawn computing fibers. Each node consists of an nRF54L15 SoC paired with an ICS-43434 digital I2S microphone, enabling synchronized audio data collection. Our design leverages Bluetooth LE connection events to synchronize local clocks with sub-10 µs accuracy across a multi-peripheral topology; we trigger precise, CPU-independent hardware events to timestamp audio samples. We demonstrate that timestamped I2S data stored in external SPI flash can be correlated across devices to extract TDoA measurements for localizing sound sources. Cross-correlation techniques allow us to estimate direction and position, with localization errors reduced from 4.17 m to 0.39 m through clock synchronization. This prototype provides a roadmap for embedding synchronized sensing and computation within fibers and smart textiles, with implications for on-body audio perception and distributed sensing in flexible electronics.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>From String to Structure: Graph Threading for Physical Assembly</title>
<link href="https://hdl.handle.net/1721.1/164646" rel="alternate"/>
<author>
<name>Lin, Rebecca Y. E.</name>
</author>
<id>https://hdl.handle.net/1721.1/164646</id>
<updated>2026-01-30T03:24:37Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">From String to Structure: Graph Threading for Physical Assembly
Lin, Rebecca Y. E.
Many artistic and engineering applications—from beadwork to deployable structures—create intricate, and sometimes dynamic, designs by threading cord through tubular components. We model the underlying design challenge—threading tubes so that they achieve a target connectivity when the string is pulled taut—as graph threading. In this formulation, tubes and their junctions correspond to edges and vertices of a graph, and the goal is to find a closed walk that induces a connected graph at every vertex while avoiding U-turns. We study two optimization objectives motivated by fabrication and deployment: minimizing length to reduce material cost and assembly time, and minimizing turn to reduce frictional resistance during deployment. For the length metric, we present a polynomial-time algorithm via reduction to minimum-weight perfect matching, prove tight worst-case bounds on optimal threadings, and identify special cases with faster algorithms. For the turn metric, we characterize the complexity landscape, proving NP-hardness for graphs of maximum degree 4, tractability for degree 3, and giving exact and approximation algorithms for restricted variants, including rectangular grid graphs. Finally, we turn from theory to fabrication, proposing multi-configuration threading—a new approach for achieving multiple predetermined configurations within a single system. As in earlier chapters, framing the problem in graph-theoretical terms provides access to powerful problem-solving techniques, guiding both algorithmic analysis and physical design.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Steering Vision at Scale: From the Model Weights to Training Data</title>
<link href="https://hdl.handle.net/1721.1/164645" rel="alternate"/>
<author>
<name>Materzyńska, Joanna</name>
</author>
<id>https://hdl.handle.net/1721.1/164645</id>
<updated>2026-01-30T03:06:51Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Steering Vision at Scale: From the Model Weights to Training Data
Materzyńska, Joanna
We study the interpretability and controllability of multimodal and generative models, with a particular focus on text–image representation models and text-to-image diffusion systems. We begin by addressing limitations in CLIP’s multimodal embeddings, specifically the entanglement between visual and textual concepts within images. We demonstrate the consequences of this entanglement in both generative and discriminative tasks, and introduce a method for disentangling visual and textual representations. We showcase the utility of these disentangled embeddings in typographic attack resistance, improved image generation, and robust out-of-domain OCR detection. Building on this foundation, we explore methods to enhance the controllability of diffusion models. First, we tackle the challenge of unwanted concept generation. We introduce a technique to remove specific visual concepts using only their names, leveraging negative prompts and guidance to suppress target content without modifying training data or requiring model retraining. This approach enhances ethical alignment and enables greater user control in generative systems. We then turn to the complementary problem: incorporating new concepts. We present a few-shot motion customization technique for video generation models, which transfers motion patterns from a small set of examples to novel subjects. This method maintains the generalization capabilities of the base model while enabling consistent, subject-agnostic animation that preserves both identity and temporal coherence. To improve the fine-grained control of visual outputs, we propose a method for continuous manipulation of image attributes. This framework introduces smooth, intuitive controls, that allow for dynamic, continuous steering of generated images. Unlike prompt engineering or token-level interventions, our approach offers real-time adjustment without sacrificing output realism. Finally, we examine whether artistic styles in diffusion models require large-scale pretraining or can be learned in a lightweight, post-training manner. To this end, we train a base model on art-free data and introduce a compact adapter method that learns stylistic concepts from a small set of exemplar artworks. Our findings suggest that artistic domains can be integrated efficiently and ethically, without reliance on web-scale scraped datasets.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Data Attribution-Based Approach to Model Diagnosis&#13;
in LC-MS/MS Structure Prediction</title>
<link href="https://hdl.handle.net/1721.1/164644" rel="alternate"/>
<author>
<name>Khoo, Ling Min Serena</name>
</author>
<id>https://hdl.handle.net/1721.1/164644</id>
<updated>2026-01-30T03:24:40Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A Data Attribution-Based Approach to Model Diagnosis&#13;
in LC-MS/MS Structure Prediction
Khoo, Ling Min Serena
Elucidating the structure of small molecules from complex mixtures using liquid chromatography tandem mass spectrometry (LC-MS/MS) is a challenging task with far-reaching implications in many areas such as drug discovery, environmental science and metabolism research. Yet, despite its importance and significant efforts to develop machine learning (ML) models for the task of elucidating the molecular structures of unknown compounds from LC-MS/MS spectra, the performance of these ML-based models remains limited. As a result, the performance of current ML-based models has been reported as insufficient for practical applications, thereby warranting a deeper investigation into their limitations to advance ML-based molecular structure elucidation from LC-MS/MS and enable their utility in real-world settings. Here, we leverage data attribution methods to systematically identify and validate hypotheses about the sources of generalization challenges that hinder current model performance. Our goal is to automatically uncover insights into the failure modes of existing ML models for LC-MS/MS, thereby laying the foundation for developing more robust and accurate models.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modeling Dynamic Objects in Scenes with Generative Particle Systems</title>
<link href="https://hdl.handle.net/1721.1/164643" rel="alternate"/>
<author>
<name>Li, Eric</name>
</author>
<id>https://hdl.handle.net/1721.1/164643</id>
<updated>2026-01-30T03:24:31Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Modeling Dynamic Objects in Scenes with Generative Particle Systems
Li, Eric
Humans readily interpret the motion of deformable and rigid bodies, even when encountering unfamiliar objects with minimal shape or texture cues. In such cases, motion serves as a critical signal for recognition and understanding. Inspired by this ability, we propose a generative model that represents 3D matter as small Gaussians (“particles”) drawn from clusters capturing groups of coherently moving matter. We develop an e!cient inference algorithm based on parallelized block Gibbs sampling to recover stable particle motion and rigid groupings. Our model provides a tractable, object-centric generalization of as-rigidas-possible (ARAP) regularizers used in motion tracking. To assess alignment with human perceptual judgments, we test our approach on random dot kinematograms—sparse motion displays in which dot trajectories convey latent object structure, often used to probe visual understanding of motion and grouping. In this setting, our approach captures human-like responses, including graded patterns of uncertainty across ambiguous conditions. Applied to naturalistic RGB videos, it infers dense particle representations that track object motion and deformation over time. These results demonstrate that our model enables persistent latent scene structure suitable for object-level reasoning.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Arm Qubit for Faster, Higher Fidelity Readout and Gates</title>
<link href="https://hdl.handle.net/1721.1/164642" rel="alternate"/>
<author>
<name>Kline, Jeremy B.</name>
</author>
<id>https://hdl.handle.net/1721.1/164642</id>
<updated>2026-01-30T03:24:44Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">The Arm Qubit for Faster, Higher Fidelity Readout and Gates
Kline, Jeremy B.
Currently, superconducting qubit processors are bottlenecked by errors during two-qubit gates, readout, and idle time. All three error contributions could be reduced if we improved the speed of operations (without introducing additional leakage errors) compared to the qubit lifetime. Readout and two-qubit gates are multimode interactions and therefore are limited by the coupling strength between the modes. In this thesis, we introduce a two-mode superconducting qubit which uses one mode to facilitate strong coupling to other modes of the quantum processor and one mode to store data with high coherence. Simulations show that this architecture could enable order-of-magnitude reductions in error during readout and two-qubit gates.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Clustering Algorithms for Component Placement in Printed Circuit Boards</title>
<link href="https://hdl.handle.net/1721.1/164641" rel="alternate"/>
<author>
<name>Petrusenko, Vlada</name>
</author>
<id>https://hdl.handle.net/1721.1/164641</id>
<updated>2026-01-30T03:24:41Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Clustering Algorithms for Component Placement in Printed Circuit Boards
Petrusenko, Vlada
In 2024, approximately 12 billion printed circuit boards (PCBs) were manufactured globally [1], with the trend increasing gradually, and the majority of PCB layouts still being completed manually. The manual design process amounts to millions of hours of tedium that can be eased with automation. One of the biggest challenges is that the complex Printed Circuit Board designs typically have hundreds, sometimes thousands of components and even more net connections between them. This makes both manual and automated placement very time-consuming. As a way to improve placement performance, in this thesis, we constructed a custom weighted undirected graph representation of components and nets for any board that would encode physical and electrical constraints. Additionally, we integrated the Louvain and Leiden clustering algorithms for component clustering in PCB placement. We also showed comparative metrics with the spectral clustering algorithm applied to unweighted graph representations, which is the prior state of this project, but it has no knowledge of electrical and physical constraints associated with PCB designs and would thus produce results that require more manual correction. This new clustering approach was able to generate more optimal clustering and reduced average runtime by 51.05%, decreased estimated length of routing by 7.72%, and improved component association score by 12.8%.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>How Data Drives ML Models Performance</title>
<link href="https://hdl.handle.net/1721.1/164640" rel="alternate"/>
<author>
<name>Khaddaj, Alaa</name>
</author>
<id>https://hdl.handle.net/1721.1/164640</id>
<updated>2026-01-30T03:06:27Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">How Data Drives ML Models Performance
Khaddaj, Alaa
Data has been been playing an increasingly more important role in the machine learning (ML) pipeline. This thesis deepens the understanding of the effect of the data on model performance and reliability. First, we study how choice of training data affects model performance. We consider a transfer learning setting and present a framework for selecting from a large pool of data a pretraining subset that improves model performance on downstream tasks. Our approach, however, requires training multiple target models which becomes prohibitively expensive at large-scale. To that end, we explore using smaller—and cheaper—proxy models to approximate large model behavior and select the pretraining data using that cheaper model. We show the effectiveness of this approach in two dataset selection settings: language modeling and imitation learning. Second, we explore the role of data in model reliability and consider two different threat models: backdoor attacks and malicious data editing. In this first threat model, an adversary injects a few doctered samples into the training set to control model predictions at inference time. We study the effect of these malicious samples on model behavior and then propose a framework for detecting and removing them from the training data. In the second threat model, an adversary leverages generative models such as diffusion models to maliciously modify personal data and generate harmful digital content. We focus on image editing and investigate how we can imperceptibly modify personal images to mitigate editing using diffusion models and raise and the cost of hamrful content generation. Overall, this thesis contributes to the understanding of the role of the data in driving model behavior. Through these efforts, we aim to provide mechanisms for (i) training models that perform better and (ii) are more reliable when deployed in the real world.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Efficient Learning and Computation of Linear Correlated Equilibrium in General Convex Games</title>
<link href="https://hdl.handle.net/1721.1/164637" rel="alternate"/>
<author>
<name>Daskalakis, Constantinos</name>
</author>
<author>
<name>Farina, Gabriele</name>
</author>
<author>
<name>Fishelson, Maxwell</name>
</author>
<author>
<name>Pipis, Charilaos</name>
</author>
<author>
<name>Schneider, Jon</name>
</author>
<id>https://hdl.handle.net/1721.1/164637</id>
<updated>2026-01-27T04:50:46Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Efficient Learning and Computation of Linear Correlated Equilibrium in General Convex Games
Daskalakis, Constantinos; Farina, Gabriele; Fishelson, Maxwell; Pipis, Charilaos; Schneider, Jon
We propose efficient no-regret learning dynamics and ellipsoid-based methods for computing linear correlated equilibria—a relaxation of correlated equilibria and a strengthening of coarse correlated equilibria—in general convex games. These are games where the number of pure strategies is potentially exponential in the natural representation of the game, such as extensive-form games. Our work identifies linear correlated equilibria as the tightest known notion of equilibrium that is computable in polynomial time and is efficiently learnable for general convex games. Our results are enabled by a generalization of the seminal framework of Gordon et al. for Φ-regret minimization, providing extensions to this framework that can be used even when the set of deviations Φ is intractable to separate/optimize over. Our polynomial-time algorithms are similarly enabled by extending the Ellipsoid-Against-Hope approach of Papadimitriou and Roughgarden and its generalization to games of non-polynomial type proposed by Farina and Pipis. We provide an extension to these approaches when we do not have access to the separation oracles required by these works for the dual player.
Constantinos Daskalakis, Gabriele Farina, Maxwell Fishelson, Charilaos Pipis, and Jon Schneider. 2025. Efficient Learning and Computation of Linear Correlated Equilibrium in General Convex Games. In Proceedings of the 57th Annual ACM Symposium on Theory of Computing (STOC '25). Association for Computing Machinery, New York, NY, USA, 542–553.
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>When Connectivity Is Hard, Random Walks Are Easy with Non-determinism</title>
<link href="https://hdl.handle.net/1721.1/164636" rel="alternate"/>
<author>
<name>Doron, Dean</name>
</author>
<author>
<name>Pyne, Edward</name>
</author>
<author>
<name>Tell, Roei</name>
</author>
<author>
<name>Williams, R. Ryan</name>
</author>
<id>https://hdl.handle.net/1721.1/164636</id>
<updated>2026-01-27T04:50:34Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">When Connectivity Is Hard, Random Walks Are Easy with Non-determinism
Doron, Dean; Pyne, Edward; Tell, Roei; Williams, R. Ryan
Two fundamental problems on directed graphs are to decide s-t connectivity, and to estimate the behavior of random walks. Currently, there is no known algorithm for s-t connectivity running in polynomial time and no(1) space, and no known algorithm for estimating the n-step random walk matrix running in non-deterministic logspace.&#13;
We show that for every directed graph, at least one of these problems is solvable in time and space that significantly improve on the respective state-of-the-art. In particular, there is a pair of algorithms A1 and A2 such that for every graph G, either:&#13;
A1(G) outputs the transitive closure of G in polynomial time and polylogarithmic space. A2(G) outputs an approximation of the n-step random walk matrix of G in non-deterministic logspace.&#13;
As one application, we show surprisingly tight win-win results for space-bounded complexity. For example, for certain parameter regimes, either Savitch’s theorem can be non-trivially sped up, or randomized space can be almost completely derandomized.&#13;
We also apply our techniques to significantly weaken the assumptions required to derandomize space-bounded computation, and to make non-deterministic space-bounded computation unambiguous. Specifically, we deduce such conclusions from lower bounds against uniform circuits of polynomial size, which is an exponential improvement on the required hardness in previous works (Doron–Pyne–Tell STOC 2024, Li–Pyne–Tell FOCS 2024). We further show similar results for minimal-memory derandomization (Doron–Tell CCC 2024).&#13;
To prove these results, we substantially improve the array of technical tools introduced in recent years for studying hardness-vs.-randomness for bounded-space computation. In particular, we develop derandomized distinguish-to-predict transformations for new types of distinguishers (corresponding to compositions of PRGs with weak distinguishers), we construct a derandomized logspace reconstruction procedure for the Shaltiel–Umans generator (JACM 2005) that can compress hard truth-tables to polylogarithmic size, and we design a version of the Chen–Tell generator (FOCS 2021) that is particularly suitable for the space-bounded setting.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>QMA vs QCMA and Pseudorandomness</title>
<link href="https://hdl.handle.net/1721.1/164635" rel="alternate"/>
<author>
<name>Liu, Jiahui</name>
</author>
<author>
<name>Mutreja, Saachi</name>
</author>
<author>
<name>Yuen, Henry</name>
</author>
<id>https://hdl.handle.net/1721.1/164635</id>
<updated>2026-01-27T04:50:44Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">QMA vs QCMA and Pseudorandomness
Liu, Jiahui; Mutreja, Saachi; Yuen, Henry
We study a longstanding question of Aaronson and Kuperberg on whether there exists a classical oracle separating QMA from QCMA. Settling this question in either direction would yield insight into the power of quantum proofs over classical proofs. We show that such an oracle exists if a certain quantum pseudorandomness conjecture holds. Roughly speaking, the conjecture posits that quantum algorithms cannot, by making few queries, distinguish between the uniform distribution over permutations versus permutations drawn from so-called “dense” distributions.&#13;
Our result can be viewed as establishing a “win-win” scenario: either there is a classical oracle separation of QMA from QCMA, or there is quantum advantage in distinguishing pseudorandom distributions on permutations.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Semantics of Integrating and Differentiating Singularities</title>
<link href="https://hdl.handle.net/1721.1/164634" rel="alternate"/>
<author>
<name>Michel, Jesse</name>
</author>
<author>
<name>Lee, Wonyeol</name>
</author>
<author>
<name>Yang, Hongseok</name>
</author>
<id>https://hdl.handle.net/1721.1/164634</id>
<updated>2026-01-27T04:50:47Z</updated>
<published>2025-06-13T00:00:00Z</published>
<summary type="text">Semantics of Integrating and Differentiating Singularities
Michel, Jesse; Lee, Wonyeol; Yang, Hongseok
A singular function is a partial function such that at one or more points, the left and/or right limit diverge (e.g., the function 1/x). Since programming languages typically support division, programs may denote singular functions. Although on its own, a singularity may be considered a bug, introducing a division-by-zero error, singular integrals—a version of the integral that is well-defined when the integrand is a singular function and the domain of integration contains a singularity—arise in science and engineering, including in physics, aerodynamics, mechanical engineering, and computer graphics.&#13;
In this paper, we present the first semantics of a programming language for singular integration. Our differentiable programming language, SingularFlow, supports the evaluation and differentiation of singular integrals. We formally define the denotational semantics of SingularFlow, deriving all the necessary mathematical machinery so that this work is rigorous and self-contained. We then define an operational semantics for SingularFlow that estimates integrals and their derivatives using Monte Carlo samples, and show that the operational semantics is a well-behaved estimator for the denotational semantics.&#13;
We implement SingularFlow in JAX and evaluate the implementation on a suite of benchmarks that perform the finite Hilbert transform, an integral transform related to the Fourier transform, which arises in domains such as physics and electrical engineering. We then use SingularFlow to approximate the solutions to four singular integral equations—equations where the unknown function is in the integrand of a singular integral—arising in aerodynamics and mechanical engineering.
</summary>
<dc:date>2025-06-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>SoS Certificates for Sparse Singular Values and Their Applications: Robust Statistics, Subspace Distortion, and More</title>
<link href="https://hdl.handle.net/1721.1/164633" rel="alternate"/>
<author>
<name>Diakonikolas, Ilias</name>
</author>
<author>
<name>Hopkins, Samuel B.</name>
</author>
<author>
<name>Pensia, Ankit</name>
</author>
<author>
<name>Tiegel, Stefan</name>
</author>
<id>https://hdl.handle.net/1721.1/164633</id>
<updated>2026-01-27T04:50:50Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">SoS Certificates for Sparse Singular Values and Their Applications: Robust Statistics, Subspace Distortion, and More
Diakonikolas, Ilias; Hopkins, Samuel B.; Pensia, Ankit; Tiegel, Stefan
We study sparse singular value certificates for random rectangular matrices. If M is a d × n matrix with independent Gaussian entries, we give a new family of polynomial-time algorithms which can certify upper bounds on the maximum of ||M u||, where u is a unit vector with at most η n nonzero entries for a given η ∈ (0,1). This basic algorithmic primitive lies at the heart of a wide range of problems across algorithmic statistics and theoretical computer science, including robust mean and covariance estimation, certification of distortion of random subspaces of n, certification of the 2 → p norm of a random matrix, and sparse principal component analysis.&#13;
Our algorithms certify a bound which is asymptotically smaller than the naive one, given by the maximum singular value of M, for nearly the widest-possible range of n,d, and η. Efficiently certifying such a bound for a range of n,d and η which is larger by any polynomial factor than what is achieved by our algorithm would violate lower bounds in the statistical query and low-degree polynomials models. Our certification algorithm makes essential use of the Sum-of-Squares hierarchy. To prove the correctness of our algorithm, we develop a new combinatorial connection between the graph matrix approach to analyze random matrices with dependent entries, and the Efron-Stein decomposition of functions of independent random variables.&#13;
As applications of our certification algorithm, we obtain new efficient algorithms for a wide range of well-studied algorithmic tasks. In algorithmic robust statistics, we obtain new algorithms for robust mean and covariance estimation with tradeoffs between breakdown point and sample complexity, which are nearly matched by statistical query and low-degree polynomial lower bounds (that we establish). We also obtain new polynomial-time guarantees for certification of ℓ1/ℓ2 distortion of random subspaces of n (also with nearly matching lower bounds), sparse principal component analysis, and certification of the 2→ p norm of a random matrix.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Weak Recovery, Hypothesis Testing, and Mutual Information in Stochastic Block Models and Planted Factor Graphs</title>
<link href="https://hdl.handle.net/1721.1/164632" rel="alternate"/>
<author>
<name>Mossel, Elchanan</name>
</author>
<author>
<name>Sly, Allan</name>
</author>
<author>
<name>Sohn, Youngtak</name>
</author>
<id>https://hdl.handle.net/1721.1/164632</id>
<updated>2026-01-27T04:51:10Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Weak Recovery, Hypothesis Testing, and Mutual Information in Stochastic Block Models and Planted Factor Graphs
Mossel, Elchanan; Sly, Allan; Sohn, Youngtak
The stochastic block model is a canonical model of communities in random graphs. It was introduced in the social sciences and statistics as a model of communities, and in theoretical computer science as an average case model for graph partitioning problems under the name of the “planted partition model.” Given a sparse stochastic block model, the two standard inference tasks are: (i) Weak recovery: can we estimate the communities with non-trivial overlap with the true communities? (ii) Detection/Hypothesis testing: can we distinguish if the sample was drawn from the block model or from a random graph with no community structure with probability tending to 1 as the graph size tends to infinity? In this work, we show that for sparse stochastic block models, the two inference tasks are equivalent except at a critical point. That is, weak recovery is information theoretically possible if and only if detection is possible. We thus find a strong connection between these two notions of inference for the model. We further prove that when detection is impossible, an explicit hypothesis test based on low-degree polynomials in the adjacency matrix of the observed graph achieves the optimal statistical power. This low-degree test is efficient as opposed to the likelihood ratio test, which is not known to be efficient. Moreover, we prove that the asymptotic mutual information between the observed network and the community structure exhibits a phase transition at the weak recovery threshold. Our results are proven in much broader settings including the hypergraph stochastic block models and general planted factor graphs. In these settings, we prove that the impossibility of weak recovery implies contiguity and provide a condition that guarantees the equivalence of weak recovery and detection.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Near-Optimal Time-Sparsity Trade-Offs for Solving Noisy Linear Equations</title>
<link href="https://hdl.handle.net/1721.1/164631" rel="alternate"/>
<author>
<name>Bangachev, Kiril</name>
</author>
<author>
<name>Bresler, Guy</name>
</author>
<author>
<name>Tiegel, Stefan</name>
</author>
<author>
<name>Vaikuntanathan, Vinod</name>
</author>
<id>https://hdl.handle.net/1721.1/164631</id>
<updated>2026-01-27T04:50:49Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Near-Optimal Time-Sparsity Trade-Offs for Solving Noisy Linear Equations
Bangachev, Kiril; Bresler, Guy; Tiegel, Stefan; Vaikuntanathan, Vinod
We present a polynomial-time reduction from solving noisy linear equations over in dimension Θ(klogn/(logk,logq,loglogn)) with a uniformly random coefficient matrix to noisy linear equations over in dimension n where each row of the coefficient matrix has uniformly random support of size k. This allows us to deduce the hardness of sparse problems from their dense counterparts. In particular, we derive hardness results in the following canonical settings:&#13;
• Assuming the ℓ-dimensional (dense) learning with errors () problem over a polynomial-size field takes time 2Ω(ℓ), k-sparse in dimension n takes time nΩ(k/(logk · (logk + loglogn))) .&#13;
• Assuming the ℓ-dimensional (dense) learning parity with noise () problem over ℤ/2ℤ takes time 2Ω(ℓ/logℓ), k-sparse in dimension n takes time nΩ(k/(logk · (logk + loglogn)2)) .&#13;
These running time lower bounds are nearly tight as both sparse problems can be solved in time nO(k), given sufficiently many samples.&#13;
Our reduction allows us to derive several consequences in cryptography and the computational complexity of statistical problems. In addition, as a new application, we give a reduction from k-sparse LWE to noisy tensor completion. Concretely, composing the two reductions implies that order-k rank-2k−1 noisy tensor completion in ℝn⊗ k takes time nΩ(k/ logk · (logk + loglogn)), assuming the exponential hardness of standard worst-case lattice problems.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Stochastic Matching via In-n-Out Local Computation Algorithms</title>
<link href="https://hdl.handle.net/1721.1/164630" rel="alternate"/>
<author>
<name>Azarmehr, Amir</name>
</author>
<author>
<name>Behnezhad, Soheil</name>
</author>
<author>
<name>Ghafari, Alma</name>
</author>
<author>
<name>Rubinfeld, Ronitt</name>
</author>
<id>https://hdl.handle.net/1721.1/164630</id>
<updated>2026-01-27T04:50:43Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Stochastic Matching via In-n-Out Local Computation Algorithms
Azarmehr, Amir; Behnezhad, Soheil; Ghafari, Alma; Rubinfeld, Ronitt
Consider the following stochastic matching problem. We are given a known graph G=(V, E). An unknown subgraph Gp = (V, Ep) is realized where Ep includes every edge of E independently with some probability p ∈ (0, 1]. The goal is to query a sparse subgraph H of G, such that the realized edges in H include an approximate maximum matching of Gp.&#13;
This problem has been studied extensively over the last decade due to its applications in kidney exchange, online dating, and online labor markets. For any fixed є &gt; 0, [BDH STOC’20] showed that any graph G has a subgraph H with (1/p) = (1/p)(log(1/p)) maximum degree, achieving a (1−є)-approximation. A major open question is the best approximation achievable with (1/p)-degree subgraphs. A long line of work has progressively improved the approximation in the (1/p)-degree regime from .5 [BDH+ EC’15] to .501 [AKL EC’17], .656 [BHFR SODA’19], .666 [AB SOSA’19], .731 [BBD SODA’22] (bipartite graphs), and most recently to .68 [DS ’24].&#13;
In this work, we show that a (1/p)-degree subgraph can obtain a (1−є)-approximation for any desirably small fixed є &gt; 0, achieving the best of both worlds.&#13;
Beyond its quantitative improvement, a key conceptual contribution of our work is to connect local computation algorithms (LCAs) to the stochastic matching problem for the first time.&#13;
While prior work on LCAs mainly focuses on their out-queries (the number of vertices probed to produce the output of a given vertex), our analysis also bounds the in-queries (the number of vertices that probe a given vertex). We prove that the outputs of LCAs with bounded in- and out-queries (in-n-out LCAs for short) have limited correlation, a property that our analysis crucially relies on and might find applications beyond stochastic matching
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Colloidal State Machines as Smart Tracers for Chemical Reactor Analysis</title>
<link href="https://hdl.handle.net/1721.1/164629" rel="alternate"/>
<author>
<name>Zhang, Ge</name>
</author>
<author>
<name>Yang, Jing Fan</name>
</author>
<author>
<name>Yang, Sungyun</name>
</author>
<author>
<name>Brooks, Allan M</name>
</author>
<author>
<name>Koman, Volodymyr B</name>
</author>
<author>
<name>Gong, Xun</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<id>https://hdl.handle.net/1721.1/164629</id>
<updated>2026-01-24T03:10:54Z</updated>
<published>2023-06-29T00:00:00Z</published>
<summary type="text">Colloidal State Machines as Smart Tracers for Chemical Reactor Analysis
Zhang, Ge; Yang, Jing Fan; Yang, Sungyun; Brooks, Allan M; Koman, Volodymyr B; Gong, Xun; Strano, Michael S
A widely utilized tool in reactor analysis is passive tracers that report the residence time distribution, allowing estimation of the conversion and other properties of the system. Recently, advances in microrobotics have introduced powered and functional entities with sizes comparable to some traditional tracers. This has motivated the concept of Smart Tracers that could record the local chemical concentrations, temperature, or other conditions as they progress through reactors. Herein, the design constraints and advantages of Smart Tracers by simulating their operation in a laminar flow reactor model conducting chemical reactions of various orders are analyzed. It is noted that far fewer particles are necessary to completely map even the most complex concentration gradients compared with their conventional counterparts. Design criteria explored herein include sampling frequency, memory storage capacity, and ensemble number necessary to achieve the required accuracy to inform a reactor model. Cases of severe particle diffusion and sensor noise appear to bind the functional upper limit of such probes and require consideration for future design. The results of the study provide a starting framework for applying the new technology of microrobotics to the broad and impactful set of problems classified as chemical reactor analysis.
</summary>
<dc:date>2023-06-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mitigation of ventilation air methane (VAM) using novel methanotrophic coating materials: a technical analysis</title>
<link href="https://hdl.handle.net/1721.1/164628" rel="alternate"/>
<author>
<name>Lundberg, Daniel James</name>
</author>
<author>
<name>Kim, Jimin</name>
</author>
<author>
<name>Parviz, Dorsa</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<id>https://hdl.handle.net/1721.1/164628</id>
<updated>2026-01-24T03:11:06Z</updated>
<published>2023-10-20T00:00:00Z</published>
<summary type="text">Mitigation of ventilation air methane (VAM) using novel methanotrophic coating materials: a technical analysis
Lundberg, Daniel James; Kim, Jimin; Parviz, Dorsa; Strano, Michael S
Ventilation air methane (VAM) is a potent greenhouse gas source originating from geological wells, current and extinct mineshafts and other terrestrial conduits venting methane to the atmosphere, contributing to global methane emissions and disproportionate warming potential. Herein, we introduce the concept of the &lt;jats:italic&gt;methanotrophic material&lt;/jats:italic&gt; as an engineering solution. Such materials should be capable of converting methane at ambient temperatures and pressures to a binder product, capturing and permanently sequestering the methane while simultaneously restricting its further emission. While such materials are currently under research development, this goal is supported and facilities by the mathematical framework, introduced and used herein, to evaluate the ability to convert methane, using currently published activity data. We include a case study of the conversion of a characteristic stream of VAM (0.6% methane in air, 1.7 × 10&lt;jats:sup&gt;8&lt;/jats:sup&gt; l hr&lt;jats:sup&gt;−1&lt;/jats:sup&gt; equivalent to 100 000 standard cubic feet per minute). We show that when appropriately designed, such systems require a surface coverage of less than 1000 m of mine tunnel length (equivalent to 20 000 m&lt;jats:sup&gt;2&lt;/jats:sup&gt; areal coverage) in order to reduce the methane emission from this stream by over 99%. Finally, we highlight formaldehyde as a reactive intermediate of methane oxidation which may itself be incorporated into these coating materials. As a component of binders and polymers already used ubiquitously in commercial products, this intermediate ultimately allows these systems to sequester the carbon from methane in a stable and solid form. The results presented here are easily extended to the treatment of other methane streams—either more concentrated or dilute—and the results herein will guide the design and development of a new class of carbon-negative materials.
</summary>
<dc:date>2023-10-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Synergistic multi-source ambient RF and thermal energy harvester for green IoT applications</title>
<link href="https://hdl.handle.net/1721.1/164627" rel="alternate"/>
<author>
<name>Bakytbekov, Azamat</name>
</author>
<author>
<name>Nguyen, Thang Q</name>
</author>
<author>
<name>Zhang, Ge</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<author>
<name>Salama, Khaled N</name>
</author>
<author>
<name>Shamim, Atif</name>
</author>
<id>https://hdl.handle.net/1721.1/164627</id>
<updated>2026-01-24T03:11:05Z</updated>
<published>2023-12-01T00:00:00Z</published>
<summary type="text">Synergistic multi-source ambient RF and thermal energy harvester for green IoT applications
Bakytbekov, Azamat; Nguyen, Thang Q; Zhang, Ge; Strano, Michael S; Salama, Khaled N; Shamim, Atif
In a future green Internet of Things (IoT) reality, billions of devices of the IoT infrastructure should be self-powered. Harvesting ambient energy to power IoT devices is an attractive solution that can extend battery life or can completely replace batteries. Considering the global applications of IoT, ubiquitous and continuous availability is an important requirement for ambient energy sources. Radio frequency (RF) energy from mobile phone towers and thermal energy from diurnal cycle temperature fluctuations are good candidates. In this study, we present a synergistic multi-source energy harvester (MSEH) comprising an RF energy harvester (RFEH) and a thermal energy harvester (TEH) integrated through a dual-function component, heatsink antenna. Both harvesters collect ambient energy 24 h a day and are not location specific. The TEH, which is in the shape of a box, collects energy using heatsinks on its sidewalls. The same heatsinks are optimized to also serve as receiving antennas of the RFEH, which collects energy from the GSM900, GSM1800, and 3G bands. Due to the synergistic integration, radiation efficiency of the antenna doubled from 40% to 80% which resulted in ∼ 10% increase in power conversion efficiency of the RFEH. Similarly, the average power of the TEH without heatsinks 120 μ W is doubled to 240 μ W for TEH with heatsinks. Field tests have shown that the outputs of the TEH and RFEH have increased 4 and 3 times compared to the independent TEH and RFEH respectively. A temperature and humidity sensor based IoT node has been successfully powered through this energy harvesting system. Overall, the MSEH can collect 3680 μ W h of energy per day which is sufficient to obtain the sensors data with a time interval of 3.5 s.
</summary>
<dc:date>2023-12-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Chromatic covalent organic frameworks enabling in-vivo chemical tomography</title>
<link href="https://hdl.handle.net/1721.1/164626" rel="alternate"/>
<author>
<name>Wang, Song</name>
</author>
<author>
<name>Han, Yangyang</name>
</author>
<author>
<name>Reddy, Vaishnavi Amarr</name>
</author>
<author>
<name>Ang, Mervin Chun-Yi</name>
</author>
<author>
<name>Sánchez-Velázquez, Gabriel</name>
</author>
<author>
<name>Saju, Jolly Madathiparambil</name>
</author>
<author>
<name>Cao, Yunteng</name>
</author>
<author>
<name>Khong, Duc Thinh</name>
</author>
<author>
<name>Jayapal, Praveen Kumar</name>
</author>
<author>
<name>Cheerlavancha, Raju</name>
</author>
<author>
<name>Loh, Suh In</name>
</author>
<author>
<name>Singh, Gajendra Pratap</name>
</author>
<author>
<name>Urano, Daisuke</name>
</author>
<author>
<name>Rajani, Sarojam</name>
</author>
<author>
<name>Marelli, Benedetto</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<id>https://hdl.handle.net/1721.1/164626</id>
<updated>2026-01-24T03:11:03Z</updated>
<published>2024-10-28T00:00:00Z</published>
<summary type="text">Chromatic covalent organic frameworks enabling in-vivo chemical tomography
Wang, Song; Han, Yangyang; Reddy, Vaishnavi Amarr; Ang, Mervin Chun-Yi; Sánchez-Velázquez, Gabriel; Saju, Jolly Madathiparambil; Cao, Yunteng; Khong, Duc Thinh; Jayapal, Praveen Kumar; Cheerlavancha, Raju; Loh, Suh In; Singh, Gajendra Pratap; Urano, Daisuke; Rajani, Sarojam; Marelli, Benedetto; Strano, Michael S
Covalent organic frameworks designed as chromatic sensors offer opportunities to probe biological interfaces, particularly when combined with biocompatible matrices. Particularly compelling is the prospect of chemical tomography – or the 3D spatial mapping of chemical detail within the complex environment of living systems. Herein, we demonstrate a chromic Covalent Organic Framework (COF) integrated within silk fibroin (SF) microneedles that probe plant vasculature, sense the alkalization of vascular fluid as a biomarker for drought stress, and provide a 3D in-vivo mapping of chemical gradients using smartphone technology. A series of Schiff base COFs with tunable pKa ranging from 5.6 to 7.6 enable conical, optically transparent SF microneedles with COF coatings of 120 to 950 nm to probe vascular fluid and the surrounding tissues of tobacco and tomato plants. The conical design allows for 3D mapping of the chemical environment (such as pH) at standoff distances from the plant, enabling in-vivo chemical tomography. Chromatic COF sensors of this type will enable multidimensional chemical mapping of previously inaccessible and complex environments.
</summary>
<dc:date>2024-10-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Decoding early stress signaling waves in living plants using nanosensor multiplexing</title>
<link href="https://hdl.handle.net/1721.1/164625" rel="alternate"/>
<author>
<name>Ang, Mervin Chun-Yi</name>
</author>
<author>
<name>Saju, Jolly Madathiparambil</name>
</author>
<author>
<name>Porter, Thomas K</name>
</author>
<author>
<name>Mohaideen, Sayyid</name>
</author>
<author>
<name>Sarangapani, Sreelatha</name>
</author>
<author>
<name>Khong, Duc Thinh</name>
</author>
<author>
<name>Wang, Song</name>
</author>
<author>
<name>Cui, Jianqiao</name>
</author>
<author>
<name>Loh, Suh In</name>
</author>
<author>
<name>Singh, Gajendra Pratap</name>
</author>
<author>
<name>Chua, Nam-Hai</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<author>
<name>Sarojam, Rajani</name>
</author>
<id>https://hdl.handle.net/1721.1/164625</id>
<updated>2026-01-24T03:11:01Z</updated>
<published>2024-01-01T00:00:00Z</published>
<summary type="text">Decoding early stress signaling waves in living plants using nanosensor multiplexing
Ang, Mervin Chun-Yi; Saju, Jolly Madathiparambil; Porter, Thomas K; Mohaideen, Sayyid; Sarangapani, Sreelatha; Khong, Duc Thinh; Wang, Song; Cui, Jianqiao; Loh, Suh In; Singh, Gajendra Pratap; Chua, Nam-Hai; Strano, Michael S; Sarojam, Rajani
Increased exposure to environmental stresses due to climate change have adversely affected plant growth and productivity. Upon stress, plants activate a signaling cascade, involving multiple molecules like H2O2, and plant hormones such as salicylic acid (SA) leading to resistance or stress adaptation. However, the temporal ordering and composition of the resulting cascade remains largely unknown. In this study we developed a nanosensor for SA and multiplexed it with H2O2 nanosensor for simultaneous monitoring of stress-induced H2O2 and SA signals when Brassica rapa subsp. Chinensis (Pak choi) plants were subjected to distinct stress treatments, namely light, heat, pathogen stress and mechanical wounding. Nanosensors reported distinct dynamics and temporal wave characteristics of H2O2 and SA generation for each stress. Based on these temporal insights, we have formulated a biochemical kinetic model that suggests the early H2O2 waveform encodes information specific to each stress type. These results demonstrate that sensor multiplexing can reveal stress signaling mechanisms in plants, aiding in developing climate-resilient crops and pre-symptomatic stress diagnoses.
</summary>
<dc:date>2024-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Polymeric Nanocarriers Autonomously Cross the Plant Cell Wall and Enable Protein Delivery for Stress Sensing</title>
<link href="https://hdl.handle.net/1721.1/164624" rel="alternate"/>
<author>
<name>Zhang, Yilin</name>
</author>
<author>
<name>Cao, Yunteng</name>
</author>
<author>
<name>Jiang, Wenzhi</name>
</author>
<author>
<name>Ma, Qingquan</name>
</author>
<author>
<name>Shin, Jinwoo</name>
</author>
<author>
<name>Sun, Hui</name>
</author>
<author>
<name>Cui, Jianqiao</name>
</author>
<author>
<name>Chen, Yongsheng</name>
</author>
<author>
<name>Giraldo, Juan Pablo</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<author>
<name>Lowry, Gregory V</name>
</author>
<author>
<name>Sheen, Jen</name>
</author>
<author>
<name>Marelli, Benedetto</name>
</author>
<id>https://hdl.handle.net/1721.1/164624</id>
<updated>2026-01-24T03:10:59Z</updated>
<published>2024-08-16T00:00:00Z</published>
<summary type="text">Polymeric Nanocarriers Autonomously Cross the Plant Cell Wall and Enable Protein Delivery for Stress Sensing
Zhang, Yilin; Cao, Yunteng; Jiang, Wenzhi; Ma, Qingquan; Shin, Jinwoo; Sun, Hui; Cui, Jianqiao; Chen, Yongsheng; Giraldo, Juan Pablo; Strano, Michael S; Lowry, Gregory V; Sheen, Jen; Marelli, Benedetto
Delivery of proteins in plant cells can facilitate the design of desired functions by modulation of biological processes and plant traits but is currently limited by narrow host range, tissue damage, and poor scalability. Physical barriers in plants, including cell walls and membranes, limit protein delivery to desired plant tissues. Herein, a cationic high aspect ratio polymeric nanocarriers (PNCs) platform is developed to enable efficient protein delivery to plants. The cationic nature of PNCs binds proteins through electrostatic. The ability to precisely design PNCs’ size and aspect ratio allowed us to find a cutoff of ≈14 nm in the cell wall, below which cationic PNCs can autonomously overcome the barrier and carry their cargo into plant cells. To exploit these findings, a reduction‐oxidation sensitive green fluorescent protein (roGFP) is deployed as a stress sensor protein cargo in a model plant &lt;jats:italic&gt;Nicotiana benthamiana&lt;/jats:italic&gt; and common crop plants, including tomato and maize. In vivo imaging of PNC‐roGFP enabled optical monitoring of plant response to wounding, biotic, and heat stressors. These results show that PNCs can be precisely designed below the size exclusion limit of cell walls to overcome current limitations in protein delivery to plants and facilitate species‐independent plant engineering.
</summary>
<dc:date>2024-08-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analysis of Glucose Responsive Glucagon Therapeutics using Computational Models of the Glucoregulatory System</title>
<link href="https://hdl.handle.net/1721.1/164623" rel="alternate"/>
<author>
<name>Alizadehmojarad, Ali A</name>
</author>
<author>
<name>Yang, Sungyun</name>
</author>
<author>
<name>Gong, Xun</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<id>https://hdl.handle.net/1721.1/164623</id>
<updated>2026-04-14T03:38:22Z</updated>
<published>2024-08-29T00:00:00Z</published>
<summary type="text">Analysis of Glucose Responsive Glucagon Therapeutics using Computational Models of the Glucoregulatory System
Alizadehmojarad, Ali A; Yang, Sungyun; Gong, Xun; Strano, Michael S
Glucose‐responsive glucagon (GRG) therapeutics are a promising technology for reducing the risk of severe hypoglycemia as a complication of diabetes mellitus. Herein, the performance of candidate GRGs in the literature by modeling the kinetics of activation and connecting them as input into physiological glucoregulatory models is evaluated and projected the two distinct GRG designs, experimental results reported in Wu et al. (GRG‐I) and Webber et al. (GRG‐II) is considered. Both are evaluated using a multi‐compartmental glucoregulatory model (IMPACT) and used to compare in‐vivo experimental data of therapeutic performance in rats and mice. For GRG‐I and GRG‐II, the total integrated glucose material balances are overestimated by 41.5% ± 14% and underestimated by 24.8% ± 16% compared to in‐vivo time‐course data, respectively. These large differences to the relatively simple computational descriptions of glucagon dynamics in the model, which underscores the urgent need for improved glucagon models is attributed. Additionally, therapeutic insulin and glucagon infusion pumps are modeled for type 1 diabetes mellitus (T1DM) human subjects to extend the results to additional datasets. These observations suggest that both the representative physiological and non‐physiological models considered in this work require additional refinement to successfully describe clinical data that involve simultaneous, coupled insulin, glucose, and glucagon dynamics.
</summary>
<dc:date>2024-08-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Microrobotic Design for the Spontaneous Tracing of Isochemical Contours in the Environment</title>
<link href="https://hdl.handle.net/1721.1/164622" rel="alternate"/>
<author>
<name>Brooks, A Merritt</name>
</author>
<author>
<name>Yang, Sungyun</name>
</author>
<author>
<name>Kang, Byung Ha</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<id>https://hdl.handle.net/1721.1/164622</id>
<updated>2026-04-14T03:38:30Z</updated>
<published>2024-09-09T00:00:00Z</published>
<summary type="text">A Microrobotic Design for the Spontaneous Tracing of Isochemical Contours in the Environment
Brooks, A Merritt; Yang, Sungyun; Kang, Byung Ha; Strano, Michael S
Microrobotic platforms hold significant potential to advance a variety of fields, from medicine to environmental sensing. Herein, minimally functional robotic entities modeled on readily achievable state-of-the-art features in a modern lab or cleanroom are computationally simulated. Inspired by Dou and Bishop (Phys Rev Res. 2019;1(3):1–5), it is shown that the simple combination of unidirectional steering connected to a single environmental (chemical) sensor along with constant propulsion gives rise to highly complex functions of significant utility. Such systems can trace the contours orthogonal to arbitrary chemical gradients in the environment. Also, pairs of such robots that are additionally capable of emitting the same chemical signal are shown to exhibit coupled relative motion. When the pair has unidirectional steering in opposite directions within the 2D plane (i.e., counter-rotating), they move in parallel trajectories to each other. Alternatively, when steering is in the same direction (corotation), the two move in the same epicyclical trajectory. In this way, the chirality of the unidirectional steering produces two distinct emergent phenomena. The behavior is understood as a ratchet mechanism that exploits the differential in the radii of curvature corresponding to different spatial locations. Applications to environmental detection, remediation, and monitoring are discussed.
</summary>
<dc:date>2024-09-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Electrokinetic Motion of Neurotransmitter Ions through a 1.01 nm Diameter Single-Walled Carbon Nanotube</title>
<link href="https://hdl.handle.net/1721.1/164621" rel="alternate"/>
<author>
<name>Ellison, Mark D</name>
</author>
<author>
<name>Allen, Jacqueline</name>
</author>
<author>
<name>Bonfiglio, Michael</name>
</author>
<author>
<name>Seeburger, Matthew</name>
</author>
<author>
<name>Setenet, Jean</name>
</author>
<author>
<name>DiGinto, Biagio</name>
</author>
<author>
<name>Bonanny, Harrison</name>
</author>
<author>
<name>Russell, Aaliyah</name>
</author>
<author>
<name>Baird, David</name>
</author>
<author>
<name>Davis, Liana</name>
</author>
<author>
<name>McCarthy, Ella</name>
</author>
<author>
<name>Manley, Alyson</name>
</author>
<author>
<name>Blatt, Sarah</name>
</author>
<author>
<name>Lippe, David</name>
</author>
<author>
<name>Ragone, Daniel</name>
</author>
<author>
<name>Dyer, Brock</name>
</author>
<author>
<name>Osgood, Jillian</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<id>https://hdl.handle.net/1721.1/164621</id>
<updated>2026-04-14T03:38:21Z</updated>
<published>2025-03-11T00:00:00Z</published>
<summary type="text">Electrokinetic Motion of Neurotransmitter Ions through a 1.01 nm Diameter Single-Walled Carbon Nanotube
Ellison, Mark D; Allen, Jacqueline; Bonfiglio, Michael; Seeburger, Matthew; Setenet, Jean; DiGinto, Biagio; Bonanny, Harrison; Russell, Aaliyah; Baird, David; Davis, Liana; McCarthy, Ella; Manley, Alyson; Blatt, Sarah; Lippe, David; Ragone, Daniel; Dyer, Brock; Osgood, Jillian; Strano, Michael S
The transport of cations of the neurotransmitters acetylcholine, choline, and dopamine through a 1.01 nm-diameter, 1.1 mm-long single-walled carbon nanotube (SWNT) has been studied for the first time. As a comparison, sodium and aniline ion transport was also investigated. All of these ions exhibited significantly enhanced electrophoretic mobilities over bulk transport. The electrophoretic mobilities of acetylcholine, choline, and sodium were found to depend on pH, specifically increasing as pH decreases. This result is explained by hydrogen ions saturating the surface charges of the SWNT. Conversely, dopamine and aniline have mobilities that do not depend on pH. This difference is attributed to the benzene ring and the size of these ions. An analysis of the time required for an ion to traverse the nanotube shows that the ions adsorb to and desorb from the walls as they pass through the tube. Acetylcholine, choline, and sodium show desorption rate constants that decrease with increasing pH, whereas dopamine and aniline have rate constants that remain constant over different pH values. This is consistent with the relationship between adsorption and desorption rate constants and mobility from an adsorption/desorption kinetic model.
</summary>
<dc:date>2025-03-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Advancements in Plant Diagnostic and Sensing Technologies</title>
<link href="https://hdl.handle.net/1721.1/164620" rel="alternate"/>
<author>
<name>Krishnamoorthi, Shalini</name>
</author>
<author>
<name>Koh, Sally Shuxian</name>
</author>
<author>
<name>Ang, Mervin Chun‐Yi</name>
</author>
<author>
<name>Teo, Mark Ju Teng</name>
</author>
<author>
<name>Jie, Randall Ang</name>
</author>
<author>
<name>Dinish, US</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<author>
<name>Urano, Daisuke</name>
</author>
<id>https://hdl.handle.net/1721.1/164620</id>
<updated>2026-04-14T03:38:29Z</updated>
<published>2025-06-23T00:00:00Z</published>
<summary type="text">Advancements in Plant Diagnostic and Sensing Technologies
Krishnamoorthi, Shalini; Koh, Sally Shuxian; Ang, Mervin Chun‐Yi; Teo, Mark Ju Teng; Jie, Randall Ang; Dinish, US; Strano, Michael S; Urano, Daisuke
Recent advancements in plant sensing technologies have significantly improved agricultural productivity while reducing resource inputs, resulting in higher yields by enabling early disease detection, precise diagnostics, and optimized fertilizer and pesticide applications. Each adopted technology offers unique advantages suitable for various farm operations, breeding programs, and laboratory research. This review article first summarizes key target traits, endogenous structures, and metabolites that serve as focal points for plant diagnostic and sensing technologies. Next, conventional plant sensing technologies based on light reflectance and fluorescence, which rely on foliar phytopigments and fluorophores such as chlorophylls are discussed. These methods, along with advanced analytical strategies incorporating machine learning, enable accurate stress detection and classification beyond general assessments of plant health and stress status. Advanced optical techniques such as Fourier transform infrared spectroscopy (FT‐IR) and Raman spectroscopy, which allow specific measurements of various plant metabolites and structural components are then highlighted. Furthermore, the design and applications of nanotechnology chemical sensors capable of highly sensitive and selective detection of specific phytochemicals, including phytohormones and signaling second messengers, which regulate physiological and developmental processes at micro‐ to sub‐micromolar concentrations are introduced. By selecting appropriate sensing methodologies, agricultural production, and relevant research activities can be significantly improved.
</summary>
<dc:date>2025-06-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Jacobi Factoring Circuit: Quantum Factoring with Near-Linear Gates and Sublinear Space and Depth</title>
<link href="https://hdl.handle.net/1721.1/164619" rel="alternate"/>
<author>
<name>Kahanamoku-Meyer, Gregory D.</name>
</author>
<author>
<name>Ragavan, Seyoon</name>
</author>
<author>
<name>Vaikuntanathan, Vinod</name>
</author>
<author>
<name>Van Kirk, Katherine</name>
</author>
<id>https://hdl.handle.net/1721.1/164619</id>
<updated>2026-04-14T03:20:06Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">The Jacobi Factoring Circuit: Quantum Factoring with Near-Linear Gates and Sublinear Space and Depth
Kahanamoku-Meyer, Gregory D.; Ragavan, Seyoon; Vaikuntanathan, Vinod; Van Kirk, Katherine
We present a compact quantum circuit for factoring a large class of integers, including some whose classical hardness is expected to be equivalent to RSA (but not including RSA integers themselves). Most notably, we factor n-bit integers of the form P2 Q with logQ = Θ(na) for a ∈ (2/3, 1) in space and depth sublinear in n (specifically, O(logQ)) using O(n) quantum gates; for these integers, no known classical algorithms exploit the relatively small size of Q to run asymptotically faster than general-purpose factoring algorithms. To our knowledge, this is the first polynomial-time circuit to achieve sublinear qubit count for a classically-hard factoring problem. We thus believe that factoring such numbers has potential to be the most concretely efficient classically-verifiable proof of quantumness currently known.&#13;
Our circuit builds on the quantum algorithm for squarefree decomposition discovered by Li, Peng, Du, and Suter (Nature Scientific Reports 2012), which relies on computing the Jacobi symbol in quantum superposition. The technical core of our contribution is a new space-efficient quantum algorithm to compute the Jacobi symbol of A mod B, in the regime where B is classical and much larger than A. Our circuit for computing the Jacobi symbol generalizes to related problems such as computing the greatest common divisor and modular inverses, and thus could be of independent interest.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Classical Commitments to Quantum States</title>
<link href="https://hdl.handle.net/1721.1/164618" rel="alternate"/>
<author>
<name>Gunn, Sam</name>
</author>
<author>
<name>Tauman Kalai, Yael</name>
</author>
<author>
<name>Natarajan, Anand</name>
</author>
<author>
<name>Vill?nyi, ?gi</name>
</author>
<id>https://hdl.handle.net/1721.1/164618</id>
<updated>2026-04-14T03:20:01Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Classical Commitments to Quantum States
Gunn, Sam; Tauman Kalai, Yael; Natarajan, Anand; Vill?nyi, ?gi
We define the notion of a classical commitment scheme to quantum states, which allows a quantum prover to compute a classical commitment to a quantum state, and later open each qubit of the state in either the standard or the Hadamard basis. Our notion is a strengthening of the measurement protocol from Mahadev (STOC 2018). We construct such a commitment scheme from the post-quantum Learning With Errors (LWE) assumption, and more generally from any noisy trapdoor claw-free function family that has the distributional strong adaptive hardcore bit property (a property that we define in this work).&#13;
Our scheme is succinct in the sense that the running time of the verifier in the commitment phase depends only on the security parameter (independent of the size of the committed state), and its running time in the opening phase grows only with the number of qubits that are being opened (and the security parameter). As a corollary we obtain a classical succinct argument system for QMA under the post-quantum LWE assumption. Previously, this was only known assuming post-quantum secure indistinguishability obfuscation. As an additional corollary we obtain a generic way of converting any X/Z quantum PCP into a succinct argument system under the quantum hardness of LWE.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Symmetric Perceptrons, Number Partitioning and Lattices</title>
<link href="https://hdl.handle.net/1721.1/164617" rel="alternate"/>
<author>
<name>Vafa, Neekon</name>
</author>
<author>
<name>Vaikuntanathan, Vinod</name>
</author>
<id>https://hdl.handle.net/1721.1/164617</id>
<updated>2026-04-14T03:20:39Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Symmetric Perceptrons, Number Partitioning and Lattices
Vafa, Neekon; Vaikuntanathan, Vinod
The symmetric binary perceptron (SBPκ) problem with parameter κ : ℝ≥1 → [0,1] is an average-case search problem defined as follows: given a random Gaussian matrix A ∼ N(0,1)n × m as input where m ≥ n, output a vector x ∈ {−1,1}m such that || A x ||∞ ≤ κ(m/n) · √m .&#13;
The number partitioning problem (NPPκ) corresponds to the special case of setting n=1. There is considerable evidence that both problems exhibit large computational-statistical gaps.&#13;
In this work, we show (nearly) tight average-case hardness for these problems, assuming the worst-case hardness of standard approximate shortest vector problems on lattices.&#13;
• For SBPκ, statistically, solutions exist with κ(x) = 2−Θ(x) (Aubin, Perkins and Zdeborová, Journal of Physics 2019). For large n, the best that efficient algorithms have been able to achieve is a far cry from the statistical bound, namely κ(x) = Θ(1/√x) (Bansal and Spencer, Random Structures and Algorithms 2020). The problem has been extensively studied in the TCS and statistics communities, and Gamarnik, Kızıldağ, Perkins and Xu (FOCS 2022) conjecture that Bansal-Spencer is tight: namely, κ(x) = Θ(1/√x) is the optimal value achieved by computationally efficient algorithms. We prove their conjecture assuming the worst-case hardness of approximating the shortest vector problem on lattices.&#13;
• For NPPκ, statistically, solutions exist with κ(m) = Θ(2−m) (Karmarkar, Karp, Lueker and Odlyzko, Journal of Applied Probability 1986). Karmarkar and Karp’s classical differencing algorithm achieves κ(m) = 2−O(log2 m) . We prove that Karmarkar-Karp is nearly tight: namely, no polynomial-time algorithm can achieve κ(m) = 2−Ω(log3 m), once again assuming the worst-case subexponential hardness of approximating the shortest vector problem on lattices to within a subexponential factor.&#13;
Our hardness results are versatile, and hold with respect to different distributions of the matrix A (e.g., i.i.d. uniform entries from [0,1]) and weaker requirements on the solution vector x.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>DNF Learning via Locally Mixing Random Walks</title>
<link href="https://hdl.handle.net/1721.1/164616" rel="alternate"/>
<author>
<name>Alman, Josh</name>
</author>
<author>
<name>Nadimpalli, Shivam</name>
</author>
<author>
<name>Patel, Shyamal</name>
</author>
<author>
<name>Servedio, Rocco A.</name>
</author>
<id>https://hdl.handle.net/1721.1/164616</id>
<updated>2026-04-14T03:20:26Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">DNF Learning via Locally Mixing Random Walks
Alman, Josh; Nadimpalli, Shivam; Patel, Shyamal; Servedio, Rocco A.
We give two results on PAC learning DNF formulas using membership queries in the challenging “distribution-free” learning framework, where learning algorithms must succeed for an arbitrary and unknown distribution over {0,1}n.&#13;
(1) We first give a quasi-polynomial time “list-decoding” algorithm for learning a single term of an unknown DNF formula. More precisely, for any target s-term DNF formula f = T1 ∨ ⋯ ∨ Ts over {0,1}n and any unknown distribution D over {0,1}n, our algorithm, which uses membership queries and random examples from D, runs in quasipoly(n,s) time and outputs a list L of candidate terms such that with high probability some term Ti of f belongs to L.&#13;
(2) We then use result (1) to give a quasipoly(n,s)-time algorithm, in the distribution-free PAC learning model with membership queries, for learning the class of size-s DNFs in which all terms have the same size. Our algorithm learns using a DNF hypothesis.&#13;
The key tool used to establish result (1) is a new result on “locally mixing random walks,” which, roughly speaking, shows that a random walk on a graph that is covered by a small number of expanders has a non-negligible probability of mixing quickly in a subset of these expanders.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Near Optimal Constant Inapproximability under ETH for Fundamental Problems in Parameterized Complexity</title>
<link href="https://hdl.handle.net/1721.1/164615" rel="alternate"/>
<author>
<name>Bafna, Mitali</name>
</author>
<author>
<name>Karthik C. S.</name>
</author>
<author>
<name>Minzer, Dor</name>
</author>
<id>https://hdl.handle.net/1721.1/164615</id>
<updated>2026-04-14T03:20:17Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Near Optimal Constant Inapproximability under ETH for Fundamental Problems in Parameterized Complexity
Bafna, Mitali; Karthik C. S.; Minzer, Dor
We prove that under the Exponential Time Hypothesis (ETH), for every ε &gt; 0, there exists a constant C &gt; 0 such that no algorithm running in time nk / logC k can determine whether a given 2-CSP instance with k variables, O(k) constraints, and alphabet size n, is perfectly satisfiable or if every assignment satisfies at most an ε fraction of the constraints.&#13;
By known reductions in the literature, the above result implies near-optimal conditional lower bounds for approximating a host of parameterized problems, such as the k-Clique problem, k-Max-Coverage problem, k-Unique Set Cover problem, k-Median and k-Means problems, parameterized variants of the Nearest Codeword problem, Minimum Distance of a Code problem, Closest Vector problem, and Shortest Vector problem.&#13;
We also establish a densification theorem for the parameterized 2-CSP problem, showing that the aforementioned conditional lower bound for sparse 2-CSPs also holds when the constraint graph is a complete graph. From this densification, we conclude that assuming ETH, there is no algorithm running in time n√k / logC k that approximates the k-Directed Steiner Network problem and the k-Strongly Connected Steiner Subgraph problem to some constant factors.
Mitali Bafna, Karthik C. S., and Dor Minzer. 2025. Near Optimal Constant Inapproximability under ETH for Fundamental Problems in Parameterized Complexity. In Proceedings of the 57th Annual ACM Symposium on Theory of Computing (STOC '25). Association for Computing Machinery, New York, NY, USA, 2118–2129.
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Oblivious Defense in ML Models: Backdoor Removal without Detection</title>
<link href="https://hdl.handle.net/1721.1/164614" rel="alternate"/>
<author>
<name>Goldwasser, Shafi</name>
</author>
<author>
<name>Shafer, Jonathan</name>
</author>
<author>
<name>Vafa, Neekon</name>
</author>
<author>
<name>Vaikuntanathan, Vinod</name>
</author>
<id>https://hdl.handle.net/1721.1/164614</id>
<updated>2026-04-14T03:20:14Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Oblivious Defense in ML Models: Backdoor Removal without Detection
Goldwasser, Shafi; Shafer, Jonathan; Vafa, Neekon; Vaikuntanathan, Vinod
As society grows more reliant on machine learning, ensuring the security of machine learning systems against sophisticated attacks becomes a pressing concern. A recent result of&#13;
Goldwasser, Kim, Vaikuntanathan, and Zamir (FOCS ’22) shows that an adversary can plant undetectable backdoors in machine learning models, allowing the adversary to covertly control the model’s behavior. Backdoors can be planted in such a way that the backdoored machine learning model is computationally indistinguishable from an honest model without backdoors.&#13;
In this paper, we present strategies for defending against backdoors in ML models, even if they are undetectable. The key observation is that it is sometimes possible to provably mitigate or even remove backdoors without needing to detect them, using techniques inspired by the notion of random self-reducibility. This depends on properties of the ground-truth labels (chosen by nature), and not of the proposed ML model (which may be chosen by an attacker).&#13;
We give formal definitions for secure backdoor mitigation, and proceed to show two types of results. First, we show a “global mitigation” technique, which removes all backdoors from a machine learning model under the assumption that the ground-truth labels are close to a Fourier-heavy function. Second, we consider distributions where the ground-truth labels are close to a linear or polynomial function in ℝn. Here, we show “local mitigation” techniques, which remove backdoors with high probability for every input of interest, and are computationally cheaper than global mitigation. All of our constructions are black-box, so our techniques work without needing access to the model’s representation (i.e., its code or parameters). Along the way we prove a simple result for robust mean estimation.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Faster Rates for No-Regret Learning in General Games via Cautious Optimism</title>
<link href="https://hdl.handle.net/1721.1/164613" rel="alternate"/>
<author>
<name>Soleymani, Ashkan</name>
</author>
<author>
<name>Piliouras, Georgios</name>
</author>
<author>
<name>Farina, Gabriele</name>
</author>
<id>https://hdl.handle.net/1721.1/164613</id>
<updated>2026-04-14T03:20:04Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Faster Rates for No-Regret Learning in General Games via Cautious Optimism
Soleymani, Ashkan; Piliouras, Georgios; Farina, Gabriele
We establish the first uncoupled learning algorithm that attains O(n log2 d logT) per-player regret in multi-player general-sum games, where n is the number of players, d is the number of actions available to each player, and T is the number of repetitions of the game. Our results exponentially improve the dependence on d compared to the O(n  d logT) regret attainable by Log-Regularized Lifted Optimistic FTRL introduced by Farina, Anagnostides, Luo, Lee, Kroer, and Sandholm [2022], and also reduce the dependence on the number of iterations T from log4 T to logT compared to Optimistic Hedge, the previously well-studied algorithm with O(n logd log4 T) regret shown by Daskalakis, Fishelson, and Golowich [2021]. Our algorithm is obtained by combining the classic Optimistic Multiplicative Weights Update (OMWU) with an adaptive, non-monotonic learning rate that paces the learning process of the players, making them more cautious when their regret becomes too negative.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Explicit Two-Sided Vertex Expanders beyond the Spectral Barrier</title>
<link href="https://hdl.handle.net/1721.1/164612" rel="alternate"/>
<author>
<name>Hsieh, Jun-Ting</name>
</author>
<author>
<name>Lin, Ting-Chun</name>
</author>
<author>
<name>Mohanty, Sidhanth</name>
</author>
<author>
<name>O'Donnell, Ryan</name>
</author>
<author>
<name>Zhang, Rachel Yun</name>
</author>
<id>https://hdl.handle.net/1721.1/164612</id>
<updated>2026-04-14T03:20:03Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Explicit Two-Sided Vertex Expanders beyond the Spectral Barrier
Hsieh, Jun-Ting; Lin, Ting-Chun; Mohanty, Sidhanth; O'Donnell, Ryan; Zhang, Rachel Yun
We construct the first explicit two-sided vertex expanders that bypass the spectral barrier.&#13;
Previously, the strongest known explicit vertex expanders were given by d-regular Ramanujan graphs, whose spectral properties imply that every small subset of vertices S has at least 0.5d|S| distinct neighbors. However, it is possible to construct Ramanujan graphs containing a small set S with no more than 0.5d|S| neighbors. In fact, no explicit construction was known to break the 0.5 d-barrier.&#13;
In this work, we give an explicit construction of an infinite family of d-regular graphs (for large enough d) where every small set expands by a factor of ≈ 0.6d.&#13;
More generally, for large enough d1,d2, we give an infinite family of (d1,d2)-biregular graphs where small sets on the left expand by a factor of ≈ 0.6d1, and small sets on the right expand by a factor of ≈ 0.6d2. In fact, our construction satisfies an even stronger property: small sets on the left and right have unique-neighbor expansion 0.6d1 and 0.6d2 respectively.&#13;
Our construction follows the tripartite line product framework of Hsieh et. al., and instantiates it using the face-vertex incidence of the 4-dimensional Ramanujan clique complex as its base component. As a key part of our analysis, we derive new bounds on the triangle density of small sets in the Ramanujan clique complex.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>All-Pairs Shortest Paths with Few Weights per Node</title>
<link href="https://hdl.handle.net/1721.1/164611" rel="alternate"/>
<author>
<name>Abboud, Amir</name>
</author>
<author>
<name>Fischer, Nick</name>
</author>
<author>
<name>Jin, Ce</name>
</author>
<author>
<name>Williams, Virginia Vassilevska</name>
</author>
<author>
<name>Xi, Zoe</name>
</author>
<id>https://hdl.handle.net/1721.1/164611</id>
<updated>2026-04-14T03:20:12Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">All-Pairs Shortest Paths with Few Weights per Node
Abboud, Amir; Fischer, Nick; Jin, Ce; Williams, Virginia Vassilevska; Xi, Zoe
We study the central All-Pairs Shortest Paths (APSP) problem under the restriction that there are at most d distinct weights on the outgoing edges from every node.&#13;
For d=n this is the classical (unrestricted) APSP problem that is hypothesized to require cubic time n3−o(1), and at the other extreme, for d=1, it is equivalent to the Node-Weighted APSP problem.&#13;
We present new algorithms that achieve the following results:&#13;
* Node-Weighted APSP can be solved in time Õ(n(3+ω)/2) = Õ(n2.686), improving on the 15-year-old subcubic bounds Õ(n(9+ω)/4) = Õ(n2.843) [Chan; STOC ’07] and Õ(n2.830) [Yuster; SODA ’09]. This positively resolves the question of whether Node-Weighted APSP is an ”intermediate” problem in the sense of having complexity n2.5+o(1) if ω=2, in which case it also matches an n2.5−o(1) conditional lower bound.&#13;
* For up to d ≤ n3−ω−є distinct weights per node (where є &gt; 0), the problem can be solved in subcubic time O(n3−f(є)) (where f(є) &gt; 0). In particular, assuming that ω = 2, we can tolerate any sublinear number of distinct weights per node d ≤ n1−є, whereas previous work [Yuster; SODA ’09] could only handle d ≤ n1/2−є in subcubic time. This promotes our understanding of the APSP hypothesis showing that the hardest instances must exhaust a linear number of weights per node. With the current bounds on ω, we achieve a subcubic algorithm for d ≤ n0.628 whereas previously a subcubic running time could only be achieved for d ≤ n0.384. Our result also applies to the All-Pairs Exact Triangle problem, thus generalizing a result of Chan and Lewenstein on “Clustered 3SUM” from arrays to matrices. Notably, our technique constitutes a rare application of additive combinatorics in graph algorithms.&#13;
We complement our algorithmic results with simple hardness reductions extending the n2.5−o(1) conditional lower bound for Node-Weighted APSP to undirected graphs. Interestingly, under fine-grained assumptions, the complexity in the undirected case jumps from O(nω) for d=1 to n2.5−o(1) for d ≥ 2.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Weak Poincaré Inequalities, Simulated Annealing, and Sampling from Spherical Spin Glasses</title>
<link href="https://hdl.handle.net/1721.1/164610" rel="alternate"/>
<author>
<name>Huang, Brice</name>
</author>
<author>
<name>Mohanty, Sidhanth</name>
</author>
<author>
<name>Rajaraman, Amit</name>
</author>
<author>
<name>Wu, David X.</name>
</author>
<id>https://hdl.handle.net/1721.1/164610</id>
<updated>2026-04-14T03:20:07Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Weak Poincaré Inequalities, Simulated Annealing, and Sampling from Spherical Spin Glasses
Huang, Brice; Mohanty, Sidhanth; Rajaraman, Amit; Wu, David X.
There has been a recent surge of powerful tools to show rapid mixing of Markov chains, via functional inequalities such as Poincaré inequalities. In many situations, Markov chains fail to mix rapidly from a worst-case initialization, yet are expected to approximately sample from a random initialization. For example, this occurs if the target distribution has metastable states, small clusters accounting for a vanishing fraction of the mass that are essentially disconnected from the bulk of the measure. Under such conditions, a Poincaré inequality cannot hold, necessitating new tools to prove sampling guarantees.&#13;
We develop a framework to analyze simulated annealing, based on establishing so-called weak Poincaré inequalities. These inequalities imply mixing from a suitably warm start, and simulated annealing provides a way to chain such warm starts together into a sampling algorithm. We further identify a local-to-global principle to prove weak Poincaré inequalities, mirroring the spectral independence and localization schemes frameworks for analyzing mixing times of Markov chains.&#13;
As our main application, we prove that simulated annealing samples from the Gibbs measure of a spherical spin glass for inverse temperatures up to a natural threshold, matching recent algorithms based on algorithmic stochastic localization. This provides the first Markov chain sampling guarantee that holds beyond the uniqueness threshold for spherical spin glasses, where mixing from a worst-case initialization is provably slow due to the presence of metastable states. As an ingredient in our proof, we prove bounds on the operator norm of the covariance matrix of spherical spin glasses in the full replica-symmetric regime.&#13;
Additionally, we resolve a question related to sampling using data-based initializations.&#13;
The full version of this paper can be found on arXiv (arXiv ID: 2411.09075).
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bypassing the Noisy Parity Barrier: Learning Higher-Order Markov Random Fields from Dynamics</title>
<link href="https://hdl.handle.net/1721.1/164609" rel="alternate"/>
<author>
<name>Gaitonde, Jason</name>
</author>
<author>
<name>Moitra, Ankur</name>
</author>
<author>
<name>Mossel, Elchanan</name>
</author>
<id>https://hdl.handle.net/1721.1/164609</id>
<updated>2026-04-14T03:20:22Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Bypassing the Noisy Parity Barrier: Learning Higher-Order Markov Random Fields from Dynamics
Gaitonde, Jason; Moitra, Ankur; Mossel, Elchanan
We consider the problem of learning graphical models, also known as Markov random fields (MRFs) from temporally correlated samples. As in many traditional statistical settings, fundamental results in the area all assume independent samples from the distribution. However, these samples generally will not directly correspond to more realistic observations from nature, which instead evolve according to some stochastic process. From the computational lens, even generating a single sample from the true MRF distribution is intractable unless NP=RP, and moreover, any algorithm to learn from i.i.d. samples requires prohibitive runtime due to hardness reductions to the parity with noise problem. These computational barriers for sampling and learning from the i.i.d. setting severely lessen the utility of these breakthrough results for this important task; however, dropping this assumption typically only introduces further algorithmic and statistical complexities. In this work, we surprisingly demonstrate that the direct trajectory data from a natural evolution of the MRF overcomes the fundamental computational lower bounds to efficient learning. In particular, we show that given a trajectory with Ok(n) site updates of an order k MRF from the Glauber dynamics, a well-studied, natural stochastic process on graphical models, there is an algorithm that recovers the graph and the parameters in Ok(n2) time. By contrast, all prior algorithms for learning order k MRFs inherently suffer from nΘ(k) runtime even in sparse instances due to the reductions to sparse parity with noise. Our results thus surprisingly show that this more realistic, but intuitively less tractable, model for MRFs actually leads to efficiency far beyond what is known and believed to be true in the traditional i.i.d. case.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Simulating Time with Square-Root Space</title>
<link href="https://hdl.handle.net/1721.1/164608" rel="alternate"/>
<author>
<name>Williams, R. Ryan</name>
</author>
<id>https://hdl.handle.net/1721.1/164608</id>
<updated>2026-04-14T03:20:10Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Simulating Time with Square-Root Space
Williams, R. Ryan
We show that for all functions t(n) ≥ n, every multitape Turing machine running in time t can be simulated in space only O(√t logt). This is a substantial improvement over Hopcroft, Paul, and Valiant’s simulation of time t in O(t/logt) space from 50 years ago [FOCS 1975, JACM 1977]. Among other results, our simulation implies that bounded fan-in circuits of size s can be evaluated on any input in only √s · poly(logs) space, and that there are explicit problems solvable in O(n) space which require at least n2−ε time on every multitape Turing machine for all ε &gt; 0, thereby making a little progress on the P versus PSPACE problem.&#13;
Our simulation reduces the problem of simulating time-bounded multitape Turing machines to a series of implicitly-defined Tree Evaluation instances with nice parameters, leveraging the remarkable space-efficient algorithm for Tree Evaluation recently found by Cook and Mertz [STOC 2024].
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Model Stealing for Any Low-Rank Language Model</title>
<link href="https://hdl.handle.net/1721.1/164607" rel="alternate"/>
<author>
<name>Liu, Allen</name>
</author>
<author>
<name>Moitra, Ankur</name>
</author>
<id>https://hdl.handle.net/1721.1/164607</id>
<updated>2026-04-14T03:38:17Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Model Stealing for Any Low-Rank Language Model
Liu, Allen; Moitra, Ankur
Model stealing, where a learner tries to recover an unknown model via carefully chosen queries, is a critical problem in machine learning, as it threatens the security of proprietary models and the privacy of data they are trained on. In recent years, there has been particular interest in stealing large language models (LLMs). In this paper, we aim to build a theoretical understanding of stealing language models by studying a simple and mathematically tractable setting. We study model stealing for Hidden Markov Models (HMMs), and more generally low-rank language models.&#13;
We assume that the learner works in the conditional query model, introduced by Kakade, Krishnamurthy, Mahajan and Zhang. Our main result is an efficient algorithm in the conditional query model, for learning any low-rank distribution. In other words, our algorithm succeeds at stealing any language model whose output distribution is low-rank. This improves upon the previous result which also requires the unknown distribution to have high “fidelity” ­– a property that holds only in restricted cases. There are two key insights behind our algorithm: First, we represent the conditional distributions at each timestep by constructing barycentric spanners among a collection of vectors of exponentially large dimension. Second, for sampling from our representation, we iteratively solve a sequence of convex optimization problems that involve projection in relative entropy to prevent compounding of errors over the length of the sequence. This is an interesting example where, at least theoretically, allowing a machine learning model to solve more complex problems at inference time can lead to drastic improvements in its performance.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Maximum Circuit Lower Bounds for Exponential-Time Arthur Merlin</title>
<link href="https://hdl.handle.net/1721.1/164606" rel="alternate"/>
<author>
<name>Chen, Lijie</name>
</author>
<author>
<name>Li, Jiatu</name>
</author>
<author>
<name>Liang, Jingxun</name>
</author>
<id>https://hdl.handle.net/1721.1/164606</id>
<updated>2026-04-14T03:20:08Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Maximum Circuit Lower Bounds for Exponential-Time Arthur Merlin
Chen, Lijie; Li, Jiatu; Liang, Jingxun
We show that the complexity class of exponential-time Arthur Merlin with sub-exponential advice (AMEXP/2nε) requires circuit complexity at least 2n/n. Previously, the best known such near-maximum lower bounds were for symmetric exponential time by Chen, Hirahara, and Ren (STOC’24) and Li (STOC’24), or randomized exponential time with MCSP oracle and sub-exponential advice by Hirahara, Lu, and Ren (CCC’23).&#13;
Our result is proved by combining the recent iterative win-win paradigm of Chen, Lu, Oliveira, Ren, and Santhanam (FOCS’23) together with the uniform hardness-vs-randomness connection for Arthur-Merlin protocols by Shaltiel-Umans (STOC’07) and van Melkebeek-Sdroievski (CCC’23). We also provide a conceptually different proof using a novel ”critical win-win” argument that extends a technique of Lu, Oliveira, and Santhanam (STOC’21).&#13;
Indeed, our circuit lower bound is a corollary of a new explicit construction for properties in coAM. We show that for every dense property P ∈ coAM, there is a quasi-polynomial-time Arthur-Merlin protocol with short advice such that the following holds for infinitely many n: There exists a canonical string wn ∈ P ∩ {0,1}n so that (1) there is a strategy of Merlin such that Arthur outputs wn with probability 1 and (2) for any strategy of Merlin, with probability 2/3, Arthur outputs either wn or a failure symbol ⊥. As a direct consequence of this new explicit construction, our circuit lower bound also generalizes to circuits with an AM ∩ coAM oracle. To our knowledge, this is the first unconditional lower bound against a strong non-uniform class using a hard language that is only ”quantitatively harder”.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>List-Decoding Capacity Implies Capacity on the &#119902;-ary Symmetric Channel</title>
<link href="https://hdl.handle.net/1721.1/164605" rel="alternate"/>
<author>
<name>Pernice, Francisco</name>
</author>
<author>
<name>Sprumont, Oscar</name>
</author>
<author>
<name>Wootters, Mary</name>
</author>
<id>https://hdl.handle.net/1721.1/164605</id>
<updated>2026-04-14T03:20:09Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">List-Decoding Capacity Implies Capacity on the &#119902;-ary Symmetric Channel
Pernice, Francisco; Sprumont, Oscar; Wootters, Mary
It is known that the Shannon capacity of the q-ary symmetric channel (qSC) is the same as the list-decoding capacity of an adversarial channel, raising the question of whether there is a formal (and black-box) connection between the two. We show that there is: Any linear code C⊆ Fqn that has superconstant minimum distance and achieves list-decoding capacity also achieves capacity on the qSC.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>A molecularly impermeable polymer from two-dimensional polyaramids</title>
<link href="https://hdl.handle.net/1721.1/164604" rel="alternate"/>
<author>
<name>Ritt, Cody L</name>
</author>
<author>
<name>Quien, Michelle</name>
</author>
<author>
<name>Wei, Zitang</name>
</author>
<author>
<name>Gress, Hagen</name>
</author>
<author>
<name>Dronadula, Mohan T</name>
</author>
<author>
<name>Altmisdort, Kaan</name>
</author>
<author>
<name>Nguyen, Huong Giang T</name>
</author>
<author>
<name>Zangmeister, Christopher D</name>
</author>
<author>
<name>Tu, Yu-Ming</name>
</author>
<author>
<name>Garimella, Sanjay S</name>
</author>
<author>
<name>Amirabadi, Shahab</name>
</author>
<author>
<name>Gadaloff, Michael</name>
</author>
<author>
<name>Hu, Weiguo</name>
</author>
<author>
<name>Aluru, Narayana R</name>
</author>
<author>
<name>Ekinci, Kamil L</name>
</author>
<author>
<name>Bunch, J Scott</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<id>https://hdl.handle.net/1721.1/164604</id>
<updated>2026-04-14T03:38:12Z</updated>
<published>2025-11-12T00:00:00Z</published>
<summary type="text">A molecularly impermeable polymer from two-dimensional polyaramids
Ritt, Cody L; Quien, Michelle; Wei, Zitang; Gress, Hagen; Dronadula, Mohan T; Altmisdort, Kaan; Nguyen, Huong Giang T; Zangmeister, Christopher D; Tu, Yu-Ming; Garimella, Sanjay S; Amirabadi, Shahab; Gadaloff, Michael; Hu, Weiguo; Aluru, Narayana R; Ekinci, Kamil L; Bunch, J Scott; Strano, Michael S
All polymers exhibit gas permeability through the free volume of entangled polymer chains1, 2–3. By contrast, two-dimensional (2D) materials including graphene stack densely and can exhibit molecular impermeability4, 5–6. Solution-synthesized 2D polymers that exhibit the latter by poly-condensation have been a longstanding goal. Herein, we demonstrate self-supporting, spin-coated 2D polyaramid nanofilms that exhibit nitrogen permeability below 3.1 × 10−9 Barrer, nearly four orders of magnitude lower than every class of existing polymer, and similar for other gases tested (helium, argon, oxygen, methane and sulfur hexafluoride). Optical interference during the pressurization of nanofilm-coated microwells allows measurement of mechanosensitive rim opening and sealing, creating gas-filled bulges that are stable exceeding three years. This discovery enables 2D polymer resonators with high resonance frequencies (about 8 MHz) and quality factors up to 537, similar to graphene. A 60-nm coating of air-sensitive perovskites reduces the lattice degradation rate 14-fold with an oxygen permeability of 3.3 × 10−8 Barrer. Molecularly impermeable polymers promise the next generation of barriers that are synthetically processable, chemically amenable and maximize molecular rejection with minimal material, ultimately advancing sustainability goals.
</summary>
<dc:date>2025-11-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Understanding and Overcoming Optimization Barriers in Non-convex and Non-smooth Machine Learning</title>
<link href="https://hdl.handle.net/1721.1/164603" rel="alternate"/>
<author>
<name>Gatmiry, Khashayar</name>
</author>
<id>https://hdl.handle.net/1721.1/164603</id>
<updated>2026-01-21T03:25:03Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Understanding and Overcoming Optimization Barriers in Non-convex and Non-smooth Machine Learning
Gatmiry, Khashayar
At their core, our machine learning systems are trained by solving an optimization problem, where the goal is to minimize a predefined objective function by adjusting model parameters based on the data. Despite the wealth of structure and prior knowledge present in the data and feedback, our training methods remain relatively simple and independent of this structure. In spite of, or perhaps because of, this simplicity, these methods are often lacking in theoretical guarantees. To design machine learning algorithms that are less data-hungry while ensuring theoretical guarantees on both computational efficiency and output validity, it is essential to better understand and leverage the rich structure within the learning setup and the data distribution, e.g. by altering the geometry of the solution space or adjusting the objective function to induce a more effective learning procedure. This approach moves beyond classical algorithm design, which focuses primarily on handling worst-case instances. This thesis investigates the optimization landscape of central learning problems and develops geometric and analytic schemes adapted to their structure, leading to algorithms with superior computational and statistical performance. In addition, it seeks to advance our mathematical understanding of the principles underlying the success of deep learning.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Seeing the Forest Through the Trees: Knowledge Retrieval for Streamlining Particle Physics Analysis</title>
<link href="https://hdl.handle.net/1721.1/164602" rel="alternate"/>
<author>
<name>McGreivy, James C.</name>
</author>
<id>https://hdl.handle.net/1721.1/164602</id>
<updated>2026-01-21T04:07:55Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Seeing the Forest Through the Trees: Knowledge Retrieval for Streamlining Particle Physics Analysis
McGreivy, James C.
Generative Large Language Models (LLMs) are a promising approach to structuring knowledge contained within otherwise unmanageable corpora of research literature produced by large-scale and long-running scientific collaborations. Within experimental particle physics, such structured knowledge bases could expedite methodological and editorial review. Complementarily, within the broader scientific community, generative LLM systems grounded in published work could make for reliable companions allowing non-experts to analyze openaccess data. Techniques such as Retrieval Augmented Generation (RAG) rely on semantically matching localized text chunks, but struggle to maintain coherent context when relevant information spans multiple segments, leading to a fragmented representation devoid of global cross-document information. In this work I utilize the hierarchical organization of experimental physics articles to build a tree representation of the corpus, and present the SciTreeRAG system which leverages this structure with the aim of constructing contexts more focused and contextually rich than a standard RAG. Additionally, I develop methods for using LLMs to transform the unstructured corpus into a structured knowledge graph representation. I then implement SciGraphRAG, a retrieval system that leverages this knowledge graph to access global cross-document relationships eluding standard RAG, with the goal of encapsulating domain-specific connections and expertise. I demonstrate proof-of-concept implementations of both systems using the corpus of the LHCb experiment at CERN.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of Low-Cost In Situ Gas Sensors for Oceanographic Applications</title>
<link href="https://hdl.handle.net/1721.1/164601" rel="alternate"/>
<author>
<name>Gower, Elizabeth Ann</name>
</author>
<id>https://hdl.handle.net/1721.1/164601</id>
<updated>2026-01-21T04:07:47Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Development of Low-Cost In Situ Gas Sensors for Oceanographic Applications
Gower, Elizabeth Ann
Anthropogenic activity has increased atmospheric carbon dioxide (CO₂) levels, disrupting the global carbon cycle and driving widespread environmental change. The ocean acts as a major sink. Accurate and scalable in situ monitoring of oceanic carbon chemistry is vital for understanding the impacts of climate change and informing marine carbon dioxide removal (mCDR) strategies. Many existing in situ instruments for marine applications are constrained by their size, cost, power requirements, or reliance on consumable reagents. Developing low-cost, compact, low-power, and accurate in situ sensors would significantly enhance the spatiotemporal resolution of oceanographic data and enable widespread monitoring of dissolved gases throughout the ocean. This, in turn, would deepen our understanding of how, where, and when changes are occurring within the marine carbon cycle. Two key variables essential for studying this cycle are the partial pressure of carbon dioxide (pCO₂) and dissolved inorganic carbon (DIC). This thesis presents the development of two sensors, one for in situ pCO₂ measurement and another for novel DIC quantification, both designed to be affordable, reliable, and scalable tools for advancing our understanding of ocean chemistry and the global carbon system. First, the development, calibration, and open-ocean deployment of a miniaturized Dissolved Multi-Gas Sensor (DMGS) that measures pCO₂ and partial pressure of oxygen (pO₂) is presented. The sensor was integrated into a custom-built surface drifter designed to entangle with Sargassum mats and send data autonomously. The drifter utilized commercial off-theshelf (COTS) components and cost roughly $1000 to build. After lab testing, a drifter was deployed in the Great Atlantic Sargassum Belt (GASB) and collected data for 22-days. In addition to gas data, the drifter tracked temperature, light intensity, humidity, pressure, and location sending measurements via an Iridium satellite. The resulting data captured dynamic changes in localized gas concentrations, temperature, and light levels that highlighted photosynthetic and respiratory activity within Sargassum patches. These drifters demonstrate the value of in situ data to investigate marine biogeochemical processes that contribute to the marine carbon cycle, especially in areas with high biologic activity. Next, this thesis presents the iterative development of a novel DIC sensor with potential for future in situ applications. Initial prototypes tested the feasibility of using a COTS CO2 sensor in both static and flow-through configurations, however sensor saturation issues prompted a shift to a pressure-based detection method. Multiple test setups were evaluated for pressure stability and sensor sensitivity, culminating in a bottle-based flow system that demonstrated the potential for reagent-minimized, pressure-based DIC quantification. With the final setup, a COTS pressure sensor that sat behind a gas permeable membrane was found to repeatably and accurately quantify DIC from acidified seawater. This approach of quantifying DIC via pressure change is novel in the field of gas sensing and maintains a low-cost, accessible design. Together, the sensors developed in this thesis expand the toolkit for marine carbon monitoring and provide a foundation for affordable, distributed sensing networks. These technologies enable higher-resolution insights into ocean biogeochemistry and support critical monitoring, reporting, and verification (MRV) frameworks needed to evaluate the effectiveness of mCDR techniques. Continued refinement of these low-cost platforms could play a key role in understanding and mitigating anthropogenic impacts on marine systems.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Applying Reference Class Forecasting to Multifamily Investments: Identifying and Capturing Operational Alpha through the Outside View</title>
<link href="https://hdl.handle.net/1721.1/164600" rel="alternate"/>
<author>
<name>Firouzian, Fardean</name>
</author>
<id>https://hdl.handle.net/1721.1/164600</id>
<updated>2026-01-21T04:07:55Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Applying Reference Class Forecasting to Multifamily Investments: Identifying and Capturing Operational Alpha through the Outside View
Firouzian, Fardean
This thesis applies Reference Class Forecasting (RCF) to multifamily real estate underwriting as a means of countering optimism bias, strategic misrepresentation, and other distortions embedded in the traditional “inside view.” Adapted from its proven application in infrastructure and corporate capital budgeting, RCF anchors projections in the actual performance distributions of comparable assets rather than in deal-specific narratives. The research centers on the development of the “Comp Warehouse,” a structured repository of property-level financials organized by market, asset class, vintage, and unit scale. By benchmarking assumptions against statistically valid reference classes, the approach enforces empirical discipline and highlights opportunities for “operational alpha”—the marginal increase in net operating income (NOI) achieved when underperforming assets converge on median peer performance. A South Florida case study demonstrates the method’s utility in an acquisition context. Analysis of 48 assets across Melbourne, Miami, Fort Lauderdale, and West Palm Beach shows that while rent levels cluster tightly around market medians, operating expenses vary widely, producing large dispersion in realized NOI. Applying the framework to a 191-unit Class A property in Fort Lauderdale illustrates how RCF can ground underwriting assumptions by distinguishing between defensible revenue-driven growth strategies and less plausible expense-reduction projections proposed in a bidding scenario. Recognizing constraints of both scale and frequency, this thesis also explores artificial intelligence as a tool for automating the ingestion and standardization of operating statements and rent rolls. Properly deployed in a human-in-the-loop framework, AI can reduce data friction, expand sample sizes, and sharpen forecasting precision. The contribution of this thesis is twofold: it demonstrates the feasibility of applying RCF to the multifamily sector—an asset class whose relative standardization, liquidity, and data availability make it especially conducive to outside-view benchmarking—and it situates the methodology within a technology-native architecture designed to scale empirical discipline, enhance underwriting rigor, and systematically capture operational alpha.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Concretely-Efficient Multi-Key Homomorphic Secret Sharing and Applications</title>
<link href="https://hdl.handle.net/1721.1/164599" rel="alternate"/>
<author>
<name>He, Kaiwen</name>
</author>
<id>https://hdl.handle.net/1721.1/164599</id>
<updated>2026-01-21T04:07:53Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Concretely-Efficient Multi-Key Homomorphic Secret Sharing and Applications
He, Kaiwen
Homomorphic secret sharing (HSS) is a powerful cryptographic primitive that enables efficient, low-communication secure computation without the use of fully homomorphic encryption. Public-key HSS is a well-known variant that supports inputs from multiple parties, but all parties must agree on a joint public key before any party can encode their inputs, requiring extra rounds of communication in applications. Recently, Couteau et al. (EUROCRYPT 2025) constructed multi-key HSS (MKHSS)—a new primitive which allows parties to encode their inputs under independent keys—under the DCR assumption. MKHSS assumes only a reusable common reference string, without the need for prior interactions between parties or a public-key infrastructure. In this paper, we construct and implement the first concretely-efficient MKHSS scheme under the same assumptions used by Couteau et al. Using an algorithmic insight that reduces the largest modulus in Couteau et al. from N⁴ to N², our optimized implementation can homomorphically multiply inputs in 5.0 milliseconds—while an implementation of Couteau et al. requires 224.6 milliseconds—thereby achieving a 45× speedup. A powerful application of MKHSS is to realize attribute-based non-interactive key exchange (ANIKE), which generalizes password-based key exchange (PAKE) to arbitrary attribute policies. ANIKE is currently only known from MKHSS. We use our implementation to evaluate the first concretely-efficient ANIKE schemes for a range of practically useful policies. Using our implementation, two parties can perform a geolocation-based key exchange in 1.65 seconds and a fuzzy PAKE on an 8-word passphrase in 7.59 seconds for realistic parameters, on a single core. Compared to using Couteau et al., which requires 62.5 and 253 seconds, we achieve 38× and 33× speedups, respectively.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reciprocity and Normality in the Scattering Matrix of Disordered Media</title>
<link href="https://hdl.handle.net/1721.1/164598" rel="alternate"/>
<author>
<name>Bharadwaj, Shreyas K.</name>
</author>
<id>https://hdl.handle.net/1721.1/164598</id>
<updated>2026-01-21T04:07:46Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Reciprocity and Normality in the Scattering Matrix of Disordered Media
Bharadwaj, Shreyas K.
The scattering matrix formalism provides a practical characterization of wave transport in linear, source-free systems by relating a set of operationally defined input and output spatial channels. The matrix is structured as a block operator, with diagonal blocks encoding same-side reflection matrices (RMs) and off-diagonal blocks encoding transmission matrices (TMs) in opposing propagation directions. Under Helmholtz reciprocity, symmetry relations are imposed: RMs are symmetric, and forward and reverse TMs are mathematical transposes of each other. These relations were employed as constraints to correct system-induced aberrations in measured scattering matrices of complex optical media via a matrix-based gradient descent procedure. Resulting phase corrections corresponded closely with classical aberration modes without heuristic parameterizations, suggesting that these modes naturally arise to restore reciprocity-induced symmetry. Vectorial TMs were measured for single- and double-pass propagation through step-index MMFs and scattering samples, with corrected phase terms showing agreement across sample types. Furthermore, matrix normality was introduced as a descriptor of stable modal transport. Normal matrices admit unitary diagonalization, reflecting orthogonal eigenchannels and spectrally coherent propagation. Near-normal behavior was observed in fiber TMs, while RMs of scattering slabs remained strongly non-normal, as quantified by a normalized Henrici departure. Sufficient conditions for normality were identified in terms of the system Green’s function and its bi-compression onto the measurement basis. A complementary dispersion experiment investigated two regimes: nearly-normal MMFs, where the Wigner–Smith time-delay operator was jointly diagonalizable and supported accurate first-order spectral models; and mechanically compressed fibers, where loss of normality produced noncommuting operators and collapse of model fidelity. These results suggest that normality captures well-behaved modal transport, underpinning the validity of parametric models and other operator-based analyses of disordered media. Together, reciprocity and normality impose complementary constraints on wave transport: reciprocity governs global symmetry, while normality captures internal coherence of modal propagation. Relevance is noted for matrix-based imaging, inverse scattering theory, and non-Hermitian wave physics, where symmetry and modal stability remain central.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mesh Differentiable Rendering for Real-World Scenes</title>
<link href="https://hdl.handle.net/1721.1/164597" rel="alternate"/>
<author>
<name>Charatan, David</name>
</author>
<id>https://hdl.handle.net/1721.1/164597</id>
<updated>2026-01-21T04:07:54Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Mesh Differentiable Rendering for Real-World Scenes
Charatan, David
Differentiable rendering has established itself as an effective tool for 3D reconstruction and novel view synthesis. Most state-of-the-art differentiable rendering methods use purpose-built renderers to optimize specialized, nonstandard 3D representations. However, most downstream applications of differentiable rendering rely on 3D meshes, which are near-universally supported due to their suitability for a wide range of rendering, simulation, and 3D modeling workflows. While prior methods have explored using 3D meshes directly within gradient-based optimization, they have been limited to object-centric scenes and cannot reconstruct real-world, unbounded scenes. This work addresses this shortcoming via a differentiable rendering formulation that combines an off-the-shelf, non-differentiable triangle rasterizer with a 3D representation that consists of nested mesh shells. During every forward pass, these shells are extracted from an underlying signed distance field. Then, the shells are independently rasterized and the resulting images are alpha-composited using opacities derived from the shells' per-vertex signed distance values. Notably, the shells' vertex positions are updated only via the underlying signed distance field, not via backpropagation through the rasterizer itself. This makes our method compatible with off-the-shelf, non-differentiable triangle rasterizers. To the best of our knowledge, our method is the first differentiable mesh rendering method that scales to unbounded, real-world 3D scenes, where it produces high-quality novel view synthesis results whose quality approaches the quality of state-of-the-art, non-mesh-based methods. Our method's performance is also competitive with state-of-the-art surface rendering methods on object-centric scenes. Ultimately, our method suggests that it may be possible to solve the differentiable rendering problem using tools from the conventional graphics toolbox rather than relying on specialized renderers.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Task-Aware Spatial and Temporal Aggregation for Capacity Expansion Planning</title>
<link href="https://hdl.handle.net/1721.1/164596" rel="alternate"/>
<author>
<name>Duguey, Gabriel</name>
</author>
<id>https://hdl.handle.net/1721.1/164596</id>
<updated>2026-01-21T04:07:49Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Task-Aware Spatial and Temporal Aggregation for Capacity Expansion Planning
Duguey, Gabriel
As we plan tomorrow’s electricity system, we face fundamental questions: where should new power plants go, which technologies deserve investment, and how much transmission is enough? These decisions are the domain of Capacity Expansion Planning (CEP), a class of optimization models that guide long-term infrastructure investments in power systems. To be realistic, CEP models must capture fine-grained spatial and temporal variations because demand varies by city and climate, while wind and solar output depend on weather patterns that shift hour by hour and location by location. But representing the system with thousands of time steps and hundreds of nodes makes the optimization problem computationally too large to solve. &#13;
&#13;
This thesis addresses the core question: how can spatial and temporal aggregation in CEP models be designed to preserve planning-relevant patterns that drive investment decisions? Existing approaches often treat aggregation as a neutral preprocessing step, relying on heuristics like political boundaries or geographic proximity. In contrast, we propose a task-aware pipeline that treats aggregation as an integral modeling decision, explicitly aligned with planning objectives.&#13;
&#13;
The approach builds a composite similarity metric that blends diverse planning-relevant signals, including, but not limited to, duration curves, ramping behavior, and spatial correlation, and uses k-medoids clustering to define spatial zones. Temporal aggregation is then applied to daily system-wide profiles, selecting representative days that maintain cross-zonal interactions. The result is a reduced spatio-temporal dataset fed into a CEP model. The resulting investment decisions are re-evaluated at full resolution to evaluate their feasibility and real cost.&#13;
&#13;
Experiments on a New England case study show the pipeline consistently outperforms common baselines like political boundaries, geographic proximity, or capacity factor statistics. Among 50 feature weightings, the best design reduces system cost by 13% compared to heuristics. Correlation-based features drive the best results, while raw amplitude and geographic location often degrade performance when used alone.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Earth as Equity Partner: A Revolutionary Approach to Ecological Conservation through Housing Development</title>
<link href="https://hdl.handle.net/1721.1/164595" rel="alternate"/>
<author>
<name>McDonough, Kate</name>
</author>
<id>https://hdl.handle.net/1721.1/164595</id>
<updated>2026-01-21T04:07:45Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Earth as Equity Partner: A Revolutionary Approach to Ecological Conservation through Housing Development
McDonough, Kate
Duddington Farm is a 312-acre site north of Baltimore, Maryland. A stream restoration project was completed at the location nearly a decade ago in concert with the State of Maryland, the Manor Conservancy, Ecotone, and landowners Harry and Tara McDonough. The project was conducted with some success, however due to a lack of State oversight and long-term management provisions, the ecology has since declined. The following proposal outlines a new model for long-term land restoration and conservation, whereby land conservation and restoration are financed not solely through short term grants and fragile easements, but through the thoughtful use of modest real estate interventions. A small cluster of homes is developed on one portion of the site. The act increases the value of the land, generates equity, and establishes a permanent conservation fund. The design protects habitat and invites people into a deeper relationship with the natural world. The plan offers scalability in taking the land value capture and applying it to future land conservation projects, compounding returns and projecting a model to preserve hundreds of thousands of acres of critical land across the United States. This model highlights Indigenous ecological knowledge (TEK) and traditional practices of engaging with the land, highlighting a deeper understanding of how humans and nature can coexist in mutually healthy ways. The model is designed at a time when watersheds, national parks, and old-growth forests are faced with the greatest threat to global ecology. Duddington Farm is used as a retrospective case, but the broader goal is to create a regenerative framework for conservation-based development across critical watershed regions.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Causal Effects of Mandatory Quarterly Earnings Guidance on Corporate Information Environment and Corporate Short-Termism</title>
<link href="https://hdl.handle.net/1721.1/164594" rel="alternate"/>
<author>
<name>Wang, Yuting</name>
</author>
<id>https://hdl.handle.net/1721.1/164594</id>
<updated>2026-01-21T03:24:57Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">The Causal Effects of Mandatory Quarterly Earnings Guidance on Corporate Information Environment and Corporate Short-Termism
Wang, Yuting
I examine the causal effects of mandatory quarterly earnings guidance using a regulatory mandate in China that required a subset of listed firms to issue bundled quarterly earnings guidance from 2007 to 2018. A difference-in-differences analysis shows that when these firms are no longer required to issue such guidance, their corporate information environment deteriorates, evidenced by reduced analyst coverage, fewer site visits, and lower price timeliness, meaning that stock prices incorporate less information about current and future earnings. However, these firms increase R&amp;D and SG&amp;A spending, consistent with alleviated managerial myopia as short-term market pressure eases. These findings highlight the dual-edged nature of the mandatory quarterly earnings guidance and offer insights for both practitioners and policymakers.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Automated Finite Elements</title>
<link href="https://hdl.handle.net/1721.1/164593" rel="alternate"/>
<author>
<name>Collin, Teodoro Fields</name>
</author>
<id>https://hdl.handle.net/1721.1/164593</id>
<updated>2026-01-21T04:07:51Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Automated Finite Elements
Collin, Teodoro Fields
Finite element methods (FEMs) are a powerful and ubiquitous tool for solving engineering problems. Experimenting with different finite elements can improve the quality and efficiency of solutions. Furthermore, in some cases, the wrong (but nonetheless most common) choice of finite element will produce solutions which converge to the wrong answer regardless of mesh resolution. However, in practice, the choice of finite element is not explored due to the complexity of re-deriving and re-implementing finite element methods. Trying a new finite element is challenging because practitioners must manually deduce formulas to use these elements and they must implement these formulas within the context of a potentially complex system. We address this problem by introducing ElementForge, a finite element system that is parametric over the literate mathematical specification of a finite element in a domain-specific language (DSL). The ElementForge compiler reasons about tensor spaces, tensors, and tensor bases from first principles to derive implementations of finite elements. The ElementForge compiler is able to automatically derive implementations of finite elements previously only derived by hand. Further, ElementForge minimally couples several key mathematical concepts, mainly tensor fields, mesh topologies, sparse tensors, and assembled finite element operators, to produce a complete finite element system that is parametric over the choice of element. Consequently, the elements derived by the compiler can be applied parametrically to new meshes, PDEs, and boundary conditions. We evaluate our system by implementing several simulations with different finite elements, demonstrating that our system can explore tradeoffs in generality, accuracy, speed, and representational complexity. For example, we are able to implement the Morley, Bell, Argyris, and Hermite like elements with less than 50 lines of code and use them all in a single simulation.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bespoke Threat Models: Achieving Realistic Privacy Guarantees for Deployed Protocols</title>
<link href="https://hdl.handle.net/1721.1/164592" rel="alternate"/>
<author>
<name>Hogan, Kyle</name>
</author>
<id>https://hdl.handle.net/1721.1/164592</id>
<updated>2026-01-21T03:24:48Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Bespoke Threat Models: Achieving Realistic Privacy Guarantees for Deployed Protocols
Hogan, Kyle
This thesis focuses on the question of what degree of privacy is achievable in the real world for long-running applications. We explore this question in two main settings: private advertising and anonymous communication. In doing so, we consider constraints each application may have in practice and what adversarial model is realistic for the context in which the application will be deployed. For real world applications, achieving perfect privacy — especially against a worst case adversary — can be impossible. That is, perfect privacy, while achievable in theory, may in practice require assumptions that conflict with usability, deployability, or utility requirements. This presents a challenge as privacy-preserving technologies can, necessarily, only provide privacy for the people who use them. Because of this, designing around user experience is critical, even if doing so requires compromises in the theoretical degree of privacy a system can provide or the strength of adversaries considered in its threat model. In the space of private advertising, we first propose a novel protocol, AdVeil, that eliminates leakage of user data beyond that revealed by the input/output of the ads ecosystem as a whole. We then provide a minimal modeling of the functionality of digital advertising which we use to prove that, even for systems like AdVeil with minimal leakage, the advertising metrics released at the end of the protocol are sufficient to leak information about end users to advertisers when combined with their audience targeting criteria. In the space of anonymous communication, we propose ShorTor, a new routing protocol for Tor that utilizes techniques popular with content distribution networks (CDNs) to reduce latency while maintaining Tor’s existing anonymity guarantees. We evaluate this protocol using a dataset of over 400,000 latency measurements we collected between the 1,000 most popular Tor relays.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Operationalizing Reliable Machine Learning: From Data Collection to Model Presentation</title>
<link href="https://hdl.handle.net/1721.1/164591" rel="alternate"/>
<author>
<name>Balagopalan, Aparna</name>
</author>
<id>https://hdl.handle.net/1721.1/164591</id>
<updated>2026-01-21T03:25:00Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Operationalizing Reliable Machine Learning: From Data Collection to Model Presentation
Balagopalan, Aparna
Automated systems driven by machine learning (ML) have made exciting progress across a spectrum of applications. Despite such progress, encoded biases and other failure modes may create barriers to the real-world utility and reliability of such systems. For example, nonrandom data missingness, biased algorithmic optimization objectives, or model presentation strategies that incorrectly impact user trust can all cause models to fail in practice. In this thesis, guided by such observations and prior work on pipeline-awareness in machine learning, we aim to operationalize reliable ML. Under this goal, we propose a framework consisting of the following three components: responsible data collection, robust algorithm development, and fair model presentation. We first conduct two case studies to advance responsible data collection. We investigate whether standard procedures for acquiring data can be repurposed when training models to mimic human judgments about norm violations. We also demonstrate patterns of delayed demographic data reporting within a longitudinal healthcare dataset and show that timevarying missingness due to such delays can distort disparity assessments. Second, we introduce two novel algorithms to improve reliability: a method that leverages representations from vision-language models to filter noisy training data, and a method to produce fair rankings that account for properties of search queries. Finally, since the presentation design of predictions impacts trust in model consumers, we propose metrics to quantify the fairness of post-hoc explainability techniques. Thus, with this thesis, we re-evaluate measurements throughout the machine learning pipeline and contribute to the broader goal of reliable machine learning.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Anti-phage defense as a driver of molecular innovation</title>
<link href="https://hdl.handle.net/1721.1/164590" rel="alternate"/>
<author>
<name>Doering, Christopher Ross</name>
</author>
<id>https://hdl.handle.net/1721.1/164590</id>
<updated>2026-01-21T03:24:56Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Anti-phage defense as a driver of molecular innovation
Doering, Christopher Ross
Bacteriophages, or phages for short, pose a near-constant threat to the bacteria they infect. Billions of years of conflict has been a catalyzing force for the creation of bacterial defense systems and corresponding phage evasion strategies. To counter phage predation, bacteria have developed a vast diversity of enzyme chemistries and molecular sensing mechanisms whose study has produced new biotechnological tools and insights into our own immune systems. In this work, I have investigated anti-phage defense mechanisms at multiple scales using a combination of genetic, biochemical, and bioinformatic approaches. First, I characterized the mechanism of action of the anti-phage defense system CmdTAC, a toxin-antitoxin-chaperone system that recognizes a viral structural protein to activate a novel mRNA ADP-ribosyltransferase, thereby halting infection. Next, I examined the diversity and distribution of anti-phage mechanisms encoded by E. coli lysogenic phages – phages capable of integrating into and lying dormant within their bacterial hosts. This analysis uncovered overlooked classes of lysogenic phages harboring novel candidate defense systems, including one newly validated system with no detectable homology to previously known mechanisms. Together, this work broadens our understanding of bacterial immune systems, expands the pool of known enzyme chemistries, and highlights areas where continued study can reveal additional mechanisms of anti-phage defense.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shaping Function Through Space: The Role of Spatial Organization in Microbial Communities</title>
<link href="https://hdl.handle.net/1721.1/164589" rel="alternate"/>
<author>
<name>Toneatti Vercelli, Gabriel</name>
</author>
<id>https://hdl.handle.net/1721.1/164589</id>
<updated>2026-01-21T03:24:46Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Shaping Function Through Space: The Role of Spatial Organization in Microbial Communities
Toneatti Vercelli, Gabriel
Spatial organization plays a critical role in microbial community function, influencing how cells exchange metabolites, coordinate behavior, and compete for resources. This thesis investigates the consequences of spatial structure in natural microbial systems and introduces a novel method to engineer these systems with high precision and scalability. First, we examine the colonization of chitin particles by marine bacteria, a model for particulate organic matter degradation. Using high-throughput phenotyping of natural isolates, we show that vitamin cross-feeding is essential for successful colonization of chitin-particles by many auxotrophic strains. We then model two distinct vitamin cross-feeding mechanisms: lysis and secretion. Using a resource-explicit modeling approach, we leverage metabolic-flux and physiological measurements to predict the colonization success of auxotrophic cross-feeders in this spatially structured environment. Second, we introduce a new chemical method for engineering microbial cell surfaces that enables covalent attachment of molecules such as enzymes and DNA strands to the cell surface. We show that this surface functionalization procedure leads to the acquisition of new phenotypes like antibiotic resistance and programmable adhesion. Altogether, this work reinforces the importance of spatial organization for microbial community function and introduces a new technique to harness this community feature and turn it into a design principle for synthetic microbial systems.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>LumiModeling: A Gaussian Splatting-Based Tool for Recreating Dynamic Material and Lighting Interaction in Architecture</title>
<link href="https://hdl.handle.net/1721.1/164588" rel="alternate"/>
<author>
<name>Cao, Biru</name>
</author>
<id>https://hdl.handle.net/1721.1/164588</id>
<updated>2026-01-21T04:07:43Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">LumiModeling: A Gaussian Splatting-Based Tool for Recreating Dynamic Material and Lighting Interaction in Architecture
Cao, Biru
This thesis presents LumiModeling, a real-time visualization tool based on Gaussian Splatting (GS) that simulates the dynamic interplay between materiality and lighting in architectural environments. While conventional design workflows rely on geometric modeling and photorealistic rendering, they often abstract complex material behaviors and fall short in capturing light-material interactions. In contrast, GS enables the reconstruction of high-fidelity 3D models from 2D image sets, representing viewdependent effects such as reflection, transparency, and surface roughness. A comparative analysis using real-world data from the MIT Stata Center and the Met Warehouse demonstrates GS’s advantages over mesh-based photogrammetry, particularly in rendering reflective and transparent materials. This work extends existing GS capabilities by implementing a relightable pipeline based on the existing model Relightable3DGaussian (Gao et al., 2023), in which each Gaussian point is augmented with physical parameters, including BRDF, surface normals, and incident lighting. The Stata Center dataset is used to test the relighting of GS. A user study involving architecture professionals reveals that perceptual focus shifts from geometry to materiality and lighting as visual realism increases. The findings highlight the potential of relightable GS in architectural visualization and anticipate its integration into future design workflows.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Urban Data Memory: Using Generative AI to Structure and Visualize Zoning Data for Urban Planning Evaluation</title>
<link href="https://hdl.handle.net/1721.1/164587" rel="alternate"/>
<author>
<name>Kupershmidt, Adi</name>
</author>
<id>https://hdl.handle.net/1721.1/164587</id>
<updated>2026-01-21T04:07:52Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Urban Data Memory: Using Generative AI to Structure and Visualize Zoning Data for Urban Planning Evaluation
Kupershmidt, Adi
Urban planners face significant challenges in systematically and quantitatively evaluating past planning practices, stemming, among other reasons, from the scarcity of accessible structured data. The period from a plan’s initiation to implementation can span generations; recorded data from the planning processes are often deemed obsolete for addressing present concerns by the time of post-occupancy evaluation. This research examines whether generative AI can help bridge this gap and under what conditions - highlighting both challenges and opportunities - by introducing a system that responsively transforms qualitative zoning data into structured, queryable formats to support the quantitative analysis of planning practices. &#13;
A database of ~150 approved semi-structured urban plans under Tel Aviv municipality’s local jurisdiction supports this project's case study. The system relies on proprietary LLMs (ChatGPT, Claude), streamlining a natural language query input through 3 agentic tasks: (1) RAG (Retrieval Augmented Generation) based querying, generating free-text answers from all plans, (2) structuring the answers to a valid JSON, and (3) visualizing structured data. Key findings indicate an 85.45% precision of the system, as evaluated through an end-to-end assessment of 11 representative queries, each validated against 40 manually labeled plans. The tool provides actionable insights, enabling queries such as trends in sheltered bicycle parking approvals or the status of affordable housing planning over the past decade.&#13;
This research underlines the significance of flexibly structuring non- and semi-structured data for urban science. It addresses the growing gap between static legacy data collection and real-time policymaking, democratizing access to planning information and fostering informed decision-making practices. Integrating cutting-edge AI-driven tools contributes to the current discourse on AI applications for city management and planning by providing a replicable model for more cities and planning datasets to build upon and improve.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Developing Methods for Enhanced Measurement of DNA Single-Strand Breaks and Somatic Variants</title>
<link href="https://hdl.handle.net/1721.1/164586" rel="alternate"/>
<author>
<name>Elacqua, Juniper J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164586</id>
<updated>2026-01-21T03:24:52Z</updated>
<published>2024-02-01T00:00:00Z</published>
<summary type="text">Developing Methods for Enhanced Measurement of DNA Single-Strand Breaks and Somatic Variants
Elacqua, Juniper J.
Maintenance and repair of DNA are essential for proper cellular functioning and preventing the emergence of disease states. As cells divide, mutations accumulate in the genome which contributes to aging phenotypes and can result in genetic diseases such as cancer. The rate at which a cell develops mutations can be accelerated through exposure to genotoxic agents that introduce lesions which, if left unrepaired, prevent accurate replication of the genome. As such, it is crucial to understand the ways in which DNA becomes damaged, how cells respond to various types of damage, and how this damage contributes to mutagenesis and the development of genetic disease. These fields of study have been greatly advanced by improvements in DNA sequencing technologies, and here we present two sequencing-based methods that aim to enable deeper study of DNA damage, repair, and mutagenesis. First, we demonstrate DENT-seq, a method that identifies single-strand breaks with single-nucleotide resolution. Single-strand breaks are the most common form of DNA damage, occurring at rates of ~10,000 per cell per day, but have to date been understudied due to lack of an unbiased, high-resolution method for their detection. Second, we improve upon lineage sequencing, a previously reported method that uniquely measures somatic single nucleotide variants in dividing cells to achieve high specificity/sensitivity as well as the ability to temporally resolve variants and to relate sequenced genotypes to optically observed cellular phenotypes. Despite the high-quality data and unique capabilities offered by this method, it has so far been underused due to a need for complex, microfluidic-based cell collection. We demonstrate novel protocols for performing lineage sequencing that enable easy adoption of the method without the need for highly specialized equipment or expertise. In addition, we expand the repertoire of mutations measurable with the technique to include indels and variants that arise specifically in response to a genotoxic treatment. The methods we show can be applied to reveal novel findings regarding the causes and consequences of DNA damage and mutagenesis that underly numerous genetic diseases.Maintenance and repair of DNA are essential for proper cellular functioning and preventing the emergence of disease states. As cells divide, mutations accumulate in the genome which contributes to aging phenotypes and can result in genetic diseases such as cancer. The rate at which a cell develops mutations can be accelerated through exposure to genotoxic agents that introduce lesions which, if left unrepaired, prevent accurate replication of the genome. As such, it is crucial to understand the ways in which DNA becomes damaged, how cells respond to various types of damage, and how this damage contributes to mutagenesis and the development of genetic disease. These fields of study have been greatly advanced by improvements in DNA sequencing technologies, and here we present two sequencing-based methods that aim to enable deeper study of DNA damage, repair, and mutagenesis. First, we demonstrate DENT-seq, a method that identifies single-strand breaks with single-nucleotide resolution. Single-strand breaks are the most common form of DNA damage, occurring at rates of ~10,000 per cell per day, but have to date been understudied due to lack of an unbiased, high-resolution method for their detection. Second, we improve upon lineage sequencing, a previously reported method that uniquely measures somatic single nucleotide variants in dividing cells to achieve high specificity/sensitivity as well as the ability to temporally resolve variants and to relate sequenced genotypes to optically observed cellular phenotypes. Despite the high-quality data and unique capabilities offered by this method, it has so far been underused due to a need for complex, microfluidic-based cell collection. We demonstrate novel protocols for performing lineage sequencing that enable easy adoption of the method without the need for highly specialized equipment or expertise. In addition, we expand the repertoire of mutations measurable with the technique to include indels and variants that arise specifically in response to a genotoxic treatment. The methods we show can be applied to reveal novel findings regarding the causes and consequences of DNA damage and mutagenesis that underly numerous genetic diseases.
</summary>
<dc:date>2024-02-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reconfigurable and Interference-Tolerant Receivers for Next Generation Wireless Systems</title>
<link href="https://hdl.handle.net/1721.1/164585" rel="alternate"/>
<author>
<name>Araei, Soroush</name>
</author>
<id>https://hdl.handle.net/1721.1/164585</id>
<updated>2026-01-21T03:24:43Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Reconfigurable and Interference-Tolerant Receivers for Next Generation Wireless Systems
Araei, Soroush
An “all-in-one” radio, programmable across the sub-7 GHz spectrum, offers significant hardware efficiency for 5G systems. However, addressing strong interferers in this wide and congested spectrum remains a major design challenge. N-path filters offer a promising solution for efficiently suppressing interference, thanks to their clock-controlled reconfigurability and excellent linearity against in-band and adjacent-channel blockers. While widely adopted in modern receiver architectures, these switched-capacitor circuits remain inherently vulnerable to blockers at clock harmonics, due to their hard-switching nature. These blockers, common in 5G bands, pose a key bottleneck, delaying the realization of fully integrated multi-band, multi-mode radios. This dissertation introduces fully passive topologies to address this challenge. The first design leverages simultaneous charge sharing and capacitor stacking to implement harmonic rejection filtering. It operates entirely without active circuitry and exhibits exceptionally low loss. A second-generation technique, termed “harmonic reset switching”, builds on this approach by rejecting harmonic blockers directly at the driving point of the N-path filter, achieving superior performance with reduced circuit complexity. As a result, existing reconfigurable receiver topologies can be seamlessly transformed into harmonic blocker–resilient architectures. For example, a taped-out mixer-first receiver adopting this technique achieves a 100× improvement in third-harmonic blocker tolerance compared to state-of-the-art broadband receivers. This dissertation also proposes a reconfigurable receiver for IoT-class radios that is tolerant to both close-in and far-out blockers. A scalable clock bootstrapping technique is introduced to enhance linearity while maintaining both power and cost efficiency. All designs are validated through prototypes fabricated in advanced 22-nm and 45-nm silicon-on-insulator (SOI) technologies. By addressing this long-standing challenge, this work paves the way for fully reconfigurable, interference-resilient radios for 5G and beyond.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Video as the Language of Embodied Intelligence</title>
<link href="https://hdl.handle.net/1721.1/164584" rel="alternate"/>
<author>
<name>Chen, Boyuan</name>
</author>
<id>https://hdl.handle.net/1721.1/164584</id>
<updated>2026-01-21T03:24:38Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Video as the Language of Embodied Intelligence
Chen, Boyuan
Achieving general-purpose embodied intelligence remains a central challenge in artificial intelligence. While recent efforts have extended Large Language Models (LLMs) to robotics by incorporating additional modalities, these adaptations face critical limitations in perception, grounding, and control. For example, spatial reasoning—a simple yet indispensable capability for robots—reveals one of such shortcoming clearly: multimodal LLMs often fail even basic spatial perception tasks like estimating distances. This thesis begins by examining these failures through SpatialVLM, a system that augments vision-language models with 3D spatial reasoning. Although more effective in spatial estimation, this work reveals a deeper issue: the fundamental expressive limitations of language-only outputs in capturing sensorimotor dynamics. Based on these findings, the thesis advocates for a ground-up methodology for robot foundation models, starting with identifying an appropriate “language” for embodied AI, then architecting models and training regimes accordingly. We investigate video as the foundational language, integrated with model-based planning for decision-making. This new paradigm is instantiated through two core contributions. The first is Diffusion Forcing, a hybrid modeling framework that combines causal next-token prediction with full-sequence diffusion. This approach supports stable, coherent rollouts far beyond the training horizon and allows guided generation for decision-making tasks, bridging predictive modeling and planning. Building on Diffusion Forcing, we introduce the Diffusion Forcing Transformer (DFoT), a natural architectural extension designed for flexible video generation conditioned on variable-length histories. To further support long-horizon world-modeling, we propose History Guidance, a set of techniques that enhance sample fidelity, temporal consistency, and compositional generalization. Together, these methods enable robust modeling of visual dynamics across extended timeframes. Finally, we present a preliminary yet promising video foundation model for zero-shot robot motion planning, highlighting the potential of video as the foundational language of embodied intelligence.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Biologically Interpretable Representation Learning for Mechanistic Insights into Cancer Immunotherapy Resistance</title>
<link href="https://hdl.handle.net/1721.1/164583" rel="alternate"/>
<author>
<name>Tariq, Ifrah</name>
</author>
<id>https://hdl.handle.net/1721.1/164583</id>
<updated>2026-01-21T03:24:22Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Biologically Interpretable Representation Learning for Mechanistic Insights into Cancer Immunotherapy Resistance
Tariq, Ifrah
Resistance to immune checkpoint inhibitors (ICIs) remains a critical barrier to effective cancer therapy, driven by complex, multi-scale interactions that current biomarkers often fail to capture. This dissertation introduces the Biologically Disentangled Variational Autoencoder (BDVAE)—an interpretable deep learning framework designed to uncover mechanistic drivers of ICI resistance through multi-omic data integration. Using RNA-seq and wholeexome sequencing data from 366 patients across melanoma, renal cell, urothelial, and gastric cancers, BDVAE learns low-dimensional latent representations that are both predictive of response and biologically meaningful. The model reveals distinct latent dimensions aligned with immune regulation, tumorintrinsic signaling, metabolism, and neuroimmune interactions. SHAP-based interpretation and pathway analysis highlight key resistance-associated programs, including immunosuppressive cytokine signaling, metabolic signaling, and neuroactive pathways such as calcium and cAMP signaling. Unsupervised clustering identifies three tumor subtypes—responder-dominant, non-responder-dominant, and an intermediate group—suggesting plastic or transitional immune states. Survival analyses confirm the clinical relevance of these clusters and expose heterogeneity within standard RECIST categories. Overall, this work presents a novel, interpretable framework for modeling ICI response, offering insights into resistance mechanisms and actionable paths for biomarker discovery, patient stratification, and therapeutic innovation in precision immuno-oncology.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Geometric interpretations of structural demand for the analysis and reduction of design complexity</title>
<link href="https://hdl.handle.net/1721.1/164582" rel="alternate"/>
<author>
<name>Lee, Keith Janghyun</name>
</author>
<id>https://hdl.handle.net/1721.1/164582</id>
<updated>2026-01-21T03:24:19Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Geometric interpretations of structural demand for the analysis and reduction of design complexity
Lee, Keith Janghyun
This dissertation presents a computational framework to effectively interpret the distribution of structural demand that emerges from the design of large-scale structural systems, and develops methods for its quantification and manipulation. Structural demand is the required strength and geometry of individual building components that emerges from design as a result of global geometry, topology, and loading. Existing metrics of structural performance fail to consider how variations in demand at the component level can lead to designs that are theoretically efficient but difficult to construct. This has led to a rejection of low-carbon, high-performance design solutions in practice, or the need for extensive post-hoc rationalization, both under the presumption of untenable design complexity for conventional building practices. This dissertation argues that an explicit consideration of the distribution of induced structural demand can bridge this gap between design intent and construction feasibility.&#13;
&#13;
To achieve this, structural demand is interpreted as sets of geometric objects in n-dimensional feature spaces, where each dimension represents an independent component of demand, such as area, length, or stiffness. By directly visualizing the spatial distribution of demand, designers are presented with a richer context of non-physical structural design information, and can evaluate how decisions in structural form affect this distribution. Further, spatial interpretations of information allow for spatial metrics of similarity and variation to be defined, from which quantitative measures of design complexity are derived that account for the shape and distribution of demand. This framework, named \emph{Demand Space Analysis}, is explored in depth and applied to a range of structural scales, from the demand of truss elements and their connections, to the relationship between demand and fixed sets of capacity. Advancements in structural optimization are also presented, enabling more efficient and direct minimization of modern structural performance metrics, from which the relationship between design performance and demand complexity can be explored. Through case studies in each chapter, this dissertation demonstrates how geometric analysis of structural demand information can inform the designer of the implications of decisions on the perceived complexity of design, and provides tools for its quantification and reduction.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Behavioral Responses to Congestion Pricing in New York&#13;
City: Mode Shift, Preference Change, and Effect Persistence</title>
<link href="https://hdl.handle.net/1721.1/164581" rel="alternate"/>
<author>
<name>Shen, ChenAn</name>
</author>
<id>https://hdl.handle.net/1721.1/164581</id>
<updated>2026-01-21T04:07:41Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Behavioral Responses to Congestion Pricing in New York&#13;
City: Mode Shift, Preference Change, and Effect Persistence
Shen, ChenAn
This thesis examines the behavioral impacts of New York City’s congestion pricing policy on weekday peak-hour travel into the pricing zone. Using a two-stage Bayesian Multinomial Logit framework applied to monthly aggregate mobility data, the study disentangles underlying preference shifts from observed mode share changes in response to the toll. Stage 1 estimates population-level travel sensitivities to cost and time, while Stage 2 uses a hierarchical structure to capture heterogeneity across demographic segments defined by income, age, and gender. The analysis spans January–June 2025 and compares results to the same months in 2024 as a counterfactual scenario without pricing. Findings show that while the policy generated a sustained mode shift away from private automobiles toward public transit, preference adaptation varied by demographic group and evolved over time. Some cohorts reinforced the intended policy effects through reduced transit travel time sensitivity, while others exhibited partial reversal as cost sensitivity shifted. These dynamic patterns underscore the importance of evaluating both immediate and evolving behavioral responses when designing congestion pricing strategies and highlight the value of aggregate behavioral modeling for timely, data-driven policy assessment.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Inhabited Arctic: Architecture, Time, and the Making of the Past in the Bering Strait (1760–1980)</title>
<link href="https://hdl.handle.net/1721.1/164580" rel="alternate"/>
<author>
<name>Springstubb, Phoebe</name>
</author>
<id>https://hdl.handle.net/1721.1/164580</id>
<updated>2026-01-21T03:24:08Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">The Inhabited Arctic: Architecture, Time, and the Making of the Past in the Bering Strait (1760–1980)
Springstubb, Phoebe
Our view of antiquity is not objective. From the eighteenth century on, the same actors and institutions involved in colonizing the Arctic shaped understandings of its deep past. Commercial whalers erected outposts on the Arctic Ocean’s edges; miners stripped tundra; trading companies raised forts. The demands of these projects complicated the Western imperial fiction of an Arctic without a past. Grappling with Arctic terrain, foreigners were confronted by a landscape inhabited not only by people and animals but by time and temporal imaginations that long preceded European colonization. They encountered contemporary Indigenous settlements coexisting with ancestral houses, fossil animals, the ruins of earlier colonial ventures, and ancient routes of exchange. This dissertation, centered on the Bering Sea and its adjacent geographies of eastern Siberia and Arctic North America, tells the story of how imperial upheaval and the rooting of colonial projects in the ground sparked a deliberate historiographic project to write the Arctic’s deep past. At the heart of this project was a conflict of different cultural views of time. Who had the right to narrate history in these northernmost borderlands? In episodes spanning two centuries, from the Russian empire’s claim to the Bering Sea to the rise of modern decolonial movements, this dissertation traces the central role of diverse Native architectures and technologies. Iñupiaq houses built from great whale skeletons, Unangax watercraft hewn from circulating driftwood, and Chukchi ice cellars carved into permafrost were both prisms for temporal explanations and sites driving change. Russian colonial administrators, British geologists, US ethnographers, Orthodox priests, and Soviet engineers co-opted them to the lineal, geological, eschatological, and paleolithic time that scaffolded imperial projects. Simultaneously, these material practices were vital sites for reinvention and identity, where Native nations built futures out of rupture. Illuminating how the ecological and epistemic limits to empire-building spurred new theories of Arctic time, this project shows history-making to be a crucial tool different states adopted to justify and naturalize their possessions of Native lands. At stake was not static historical truth but how politically situated temporalities structured their present-day actions. The ethical dimensions of deep time, imagined from the Bering Strait’s modern lands and seas, empowered empire’s practical work. How the past was conceived in different intellectual traditions informed whether animals and plants were exploitable resources or ancestors giving their bodies to architecture. This project contends that how people understood themselves as being in time was a decisive fulcrum ordering collective beliefs in what was owed to a larger, nonhuman world. Taking time as an analytical lens, this dissertation identifies repeated efforts to cleave the Arctic’s human history from nature’s past. Used to justify a wide range of colonial hierarchies and violence in the long nineteenth century, it underlies a contemporary bias toward seeing the Arctic as a region of deep naturalism. Viewed as a place where an “extreme” climate dominates manifold other historicities, the past so circumscribed continues to shape future possibilities.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Asset Limits, Savings Behavior, and Welfare: Evidence from the SIPP and a Life-Cycle Model</title>
<link href="https://hdl.handle.net/1721.1/164579" rel="alternate"/>
<author>
<name>Gamble IV, James Monroe</name>
</author>
<id>https://hdl.handle.net/1721.1/164579</id>
<updated>2026-01-21T04:07:33Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Asset Limits, Savings Behavior, and Welfare: Evidence from the SIPP and a Life-Cycle Model
Gamble IV, James Monroe
This paper examines how asset limits in means-tested welfare programs shape household saving behavior. I exploit cross-state variation in Temporary Assistance for Needy Families (TANF) asset limits by linking these limits to individual-level data from the Survey of Income and Program Participation (SIPP) and estimating ordinary least squares (OLS) regressions with state and year fixed effects. I find that a $1 increase in the liquid asset limit corresponds to a $0.75 decrease in non-housing wealth among single mothers without a high school diploma. This suggests that less stringent asset tests reduce incentives to save, consistent with models in which more generous public insurance lowers the need for precautionary saving.&#13;
&#13;
To interpret these findings, I develop a dynamic life-cycle model of saving under income and medical expense risk, calibrated to key moments from the Hubbard, Skinner, and Zeldes framework. The model embeds Medicaid-style transfer rules and a guaranteed consumption floor. Simulations indicate that a $7,000 consumption floor can reduce median assets by up to 20% among low-education households, reflecting a decrease in self-insurance as public support increases. I then extend the model to include Achieving a Better Life Experience (ABLE) accounts, which are tax-advantaged savings vehicles for individuals with disabilities exempt from means testing. Simulations indicate that ABLE eligibility increases early-life consumption by approximately $10,000 and reduces retirement savings, with account holders shifting more spending into their working years. Together, these results yield a direct mapping from policy levers, including asset-limit generosity, earnings disregards, childcare subsidies, and ABLE exemption rules, to predicted shifts in median household assets. This offers policymakers a practical tool to balance public insurance and private precautionary savings.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Building the 3D Genome from the Ground Up: Local Interactions Give Rise to Global Order</title>
<link href="https://hdl.handle.net/1721.1/164578" rel="alternate"/>
<author>
<name>Athreya, Advait</name>
</author>
<id>https://hdl.handle.net/1721.1/164578</id>
<updated>2026-01-21T03:23:55Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Building the 3D Genome from the Ground Up: Local Interactions Give Rise to Global Order
Athreya, Advait
The three-dimensional organization of the genome within the nucleus plays a central role in determining gene regulation and establishing cellular identity, but the mechanisms by which local molecular interactions give rise to global chromatin architecture remain an active area of study. Interactions between nucleosomes—modulated by histone tail post-translational modifications, histone sequence variants, and the DNA sequence itself—are thought to be a major driver of this emergent structure. In this thesis, I address the question of how these intrinsic physicochemical properties of nucleosomes drive the formation of large-scale structures such as chromatin compartments. I develop a theoretical framework based on Flory-Huggins solution theory to derive pairwise internucleosome contact energies from the results of condense-seq, a novel experimental technique that measures the phase separation likelihood of native nucleosomes. I then use these derived energies to parameterize coarse-grained molecular dynamics simulations of chromatin at various resolutions, ranging from 25kb segments to simulate an entire chromosome, down to individual nucleosomes to simulate up to 10Mb genomic regions. These simulations demonstrate that the intrinsic nucleosome properties alone can capture a significant degree of A/B compartment formation observed in Hi-C experiments, despite the deliberate exclusion of all other factors such as loop extrusion and transcriptionfactor-mediated phenomena. This finding establishes that local nucleosome properties play a fundamental role in genome organization. To capture more detailed chromatin physics, I develop an extended chromatin force-field that incorporates anisotropic nucleosome stacking interactions and linker DNA properties using a novel approach for simulating reversible bond formation in molecular dynamics. This model reveals how nucleosome stacking strength, linker DNA geometry, and torsional stress collectively influence higher-order structures. Early results show that the linker-length-dependent DNA torsion contributes to nematic ordering of chromatin, consistent with experimental studies. Future development of this model will enable probing of discrete domain formation observed in imaging studies. Finally, I address a critical consideration for researchers in the chromatin organization field when analyzing Hi-C results. I compare two software tools — cooltools and dcHiC — highlighting the importance of careful parameter selection and analytical choices in designing workflows to ensure reproducible research. Taken together, this work establishes a quantitative, bottom-up modeling framework that directly links the local physicochemical properties of nucleosomes to the global principles governing three-dimensional genome organization. It provides a complementary approach to more data-driven top-down models that have made significant inroads but are challenging to interpret mechanistically. With further development, the work presented in this thesis will contribute towards predicting the structural consequences of specific epigenetic modifications and move us closer to understanding the molecular grammar of chromatin and its role in cellular function and disease.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>On Subannual Variability in the Abyssal Ocean</title>
<link href="https://hdl.handle.net/1721.1/164577" rel="alternate"/>
<author>
<name>Chen, Si Yuan</name>
</author>
<id>https://hdl.handle.net/1721.1/164577</id>
<updated>2026-01-21T03:23:46Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">On Subannual Variability in the Abyssal Ocean
Chen, Si Yuan
The abyssal ocean is a critical yet understudied component of the climate system and is of growing economic interest. This thesis combines field observations and numerical modeling to advance our understanding of subannual variability in the abyssal ocean and its broader implications.&#13;
&#13;
First, hydrographic measurements from the Clarion-Clipperton Zone of the tropical Northeastern Pacific are used to characterize the structure and variability of the bottom mixed layer (BML) in a region targeted for deep-sea mining. The observations reveal a spatially and temporally variable BML with a mean thickness of ~250 m and influenced by interactions with mesoscale eddies and abyssal thermal fronts. A simplified model of sediment transport suggests that such variations in BML structure could significantly influence the dispersal of sediments resuspended by seabed mining activities.&#13;
&#13;
Second, idealized model experiments are conducted to explore the genesis of benthic storms – episodes of strong near-bottom flows and sediment entrainment – underneath an unstable, surface-intensified jet resembling the Gulf Stream east of Cape Hatteras. In these experiments, the baroclinic instability of the jet gives rise to deep cyclonic and anticyclonic eddies through eddy barotropization and to high levels of eddy kinetic energy at abyssal depths through the convergence of vertical eddy pressure fluxes. The near-bottom currents are comparable in magnitude to those observed during benthic storms, with vertical shears strong enough to produce BMLs up to O(100) m thick. Deep cyclonic eddies transport particles from near the bottom over the entire BML and could contribute to benthic nepheloid layers. The results suggest that the abyssal response to the intrinsic instability of surface-intensified currents could contribute significantly to subannual variability near the seafloor.&#13;
&#13;
Third, a model simulation of western North Atlantic circulation is performed to study the deep cyclones (DCs) observed beneath Gulf Stream meander troughs. The characteristics of the simulated DCs compare well with field observations. The negative pressure tendency during cyclogenesis arises from a small imbalance between the sea surface depression and the vertically-integrated increase in seawater density. Vortex stretching is the primary source of cyclonic vorticity, while vortex tilting is a non-negligible sink. The deep pressure tendency, vorticity fluxes, and ageostrophic flows are diagnosed, and their similarities and differences with mid-latitude synoptic cyclones in the atmosphere are discussed. Near-bottom currents in DCs dominate the basin-scale bottom energy dissipation and transport fluid over ≥1000 km horizontally and O(100) m vertically within 3~4 months, suggesting that they provide an efficient mechanism for tracer and material transport in the abyssal interior.&#13;
&#13;
Collectively, this thesis highlights the importance of transient, mesoscale processes in contributing to subannual variability in the abyssal ocean, particularly near the seafloor. The findings have broader relevance for monitoring the environmental impacts of human activities, including deep-sea mining and carbon sequestration. While further questions remain for future investigation, this work underscores the need for sustained in-situ observations in the abyssal ocean and calls for the implementation of high vertical resolution in numerical ocean circulation models.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Democratizing High-Performance DSL Development with the BuildIt Framework</title>
<link href="https://hdl.handle.net/1721.1/164576" rel="alternate"/>
<author>
<name>Brahmakshatriya, Ajay</name>
</author>
<id>https://hdl.handle.net/1721.1/164576</id>
<updated>2026-01-21T03:23:34Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Democratizing High-Performance DSL Development with the BuildIt Framework
Brahmakshatriya, Ajay
Modern high-performance software from a variety of domains relies on hand-written and hand-optimized libraries to obtain the best performance. Besides general fine-grained operators that can be composed to write entire applications, these libraries also provide coarser-grained fused and hand-optimized operators that are much faster due to being optimized for a specific sequence of operations. However, as application needs keep growing, library writers are not able to keep up and have to make the tradeoff of either sacrificing performance or generality. Domain-specific languages or DSLs are able to break this tradeoff by automatically generating the best implementation for any arbitrary sequence of operations specified by the end user. However, DSL compilers suffer from a bigger challenge that they require a lot of compiler knowledge to implement parsers, IR, analysis and transformations, and code generation, which is outside the scope of a typical domain expert. To make compiler technology and the benefits of code-generation more accessible to domain experts, I propose the use of multi-stage programming to allow writers to write library-like code while also combining it to generate the most efficient implementation for any whole program. In this thesis, I discuss the design of different multi-stage programming systems, the benefits and drawbacks. Next, I propose Re-Execution Based Multi-Staging (REMS) that addresses a critical flaw in many imperative Multi-Staging systems - the side-effect leak problem. I introduce BuildIt, an implementation of REMS in one of the most popular languages for writing high-performance applications, C++ in a type-based, lightweight way without changing the compiler. I describe the internals of BuildIt and how it implements the key features of REMS. Furthermore, I describe a set of extensions implemented on top of BuildIt that facilitate the development of high-performance DSLs with ease. I show the application of BuildIt to create three DSLs - EasyGraphit, NetBlocks, and BREeze that target graph analytics, ad-hoc network protocol generation, and Regex matching. All these case studies show 10-100x reduction in the amount of effort required to implement these DSLs that perform on-par with or better than state-of-the-art compiler frameworks while targeting diverse architectures like CPUs and GPUS. Finally, I introduce D2X, a system that is designed to add extensible and contextual debugging support to DSL implementations without having to make any changes to off-the-shelf debuggers or mess with complex debugging formats. Next, I show how applying D2X to the BuildIt system greatly improves the debugging experience for all DSLs written with BuildIt.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tailoring Li₄Ti₅O₁₂ Thin Film Carrier Kinetics Through Solid Solution Doping for Battery and Memristor Applications</title>
<link href="https://hdl.handle.net/1721.1/164575" rel="alternate"/>
<author>
<name>Buzzell, Drew E.</name>
</author>
<id>https://hdl.handle.net/1721.1/164575</id>
<updated>2026-01-21T03:23:32Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Tailoring Li₄Ti₅O₁₂ Thin Film Carrier Kinetics Through Solid Solution Doping for Battery and Memristor Applications
Buzzell, Drew E.
A Lithium titanate, Li₄Ti₅O₁₂ (LTO4), due to its zero-strain behavior during cycling, excellent chemical stability and cyclability, is a promising anode material for solid-state batteries (SSB) applications. As a thin film, its applications expand to integrated circuits, sensors, flexible batteries, IoT devices, and memristors. Across these, precise control of mixed Li⁺ ionic–electronic transport is vital. While dopants have been shown to improve electron conduction and Li⁺ diffusion in LTO4 powders, thin-film studies remain limited. To bridge this gap, we investigate solid solution dopants (Nb⁵⁺, V⁵⁺, Mg²⁺, Cu²⁺) and their effects on LTO4 thin-film kinetics and performance in batteries and memristors. Films doped with Mg, Cu, Nb, and V with a 0.2M dopant concentration were deposited on Nbdoped SrTiO₂ substrates. Cyclic voltammetry and impedance spectroscopy show that Mg, Nb, and V improve kinetic metrics, while Cu reduces diffusivity but boosts electronic conductivity. Through galvanostatic cycling-based capacity, rate capability, and stability measurements, we found that while all dopants displayed enhanced rate performance, the capacity improved only with Mg, Nb, and V. Furthermore, the Mg-doped film was found to have an unstable capacity leading to Nb- and V-doped thin-films as the best overall performing battery anodes. For memristors, current–voltage cycling measurements revealed that low concentrations (0.05 M) of Cu and Nb doped devices presented the largest improvements in cycle-to-cycle stability, switching ON-voltages, ON-OFF current ratios, and lower loss in peak current with increasing scan rate. With increasing dopant concentrations however, devices would see relative drops in performance. In summary, the inclusion of dopants in LTO4 at the right concentration level leads to improvements in both battery and memristor performance allowing for one material multi-functional systems.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Strain-resolved transcriptomics: exploring functional heterogeneity of the gut microbiota in health and disease</title>
<link href="https://hdl.handle.net/1721.1/164574" rel="alternate"/>
<author>
<name>Burgos Robles, Emanuel Felipe</name>
</author>
<id>https://hdl.handle.net/1721.1/164574</id>
<updated>2026-01-21T04:08:09Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Strain-resolved transcriptomics: exploring functional heterogeneity of the gut microbiota in health and disease
Burgos Robles, Emanuel Felipe
The gut microbiome plays a critical role in inflammatory bowel diseases (IBDs), yet current analyses treat bacterial species as functionally uniform, ignoring extensive strain-level diversity that may drive disease mechanisms. Here, we developed a strain-resolved metatranscriptomics framework to investigate how transcriptional activity varies across bacterial lineages and relates to IBD pathogenesis. Using paired metagenomics and metatranscriptomics data from 1,067 fecal samples (103 IBD and 335 non-IBD patients), we first constructed phylogenetic trees for over 250 bacterial species using the single nucleotide variants within essential housekeeping genes, enabling the identification of bacterial strains. Next, we devised a statistical approach to assign mRNA reads to these strains, leveraging the natural genetic variation that is present across them. My analysis revealed that closely related bacterial strains exhibit dramatically different transcriptional programs, with some strains enriched in IBD patients showing upregulation of genes involved in stress response, sugar metabolism pathways, and antimicrobial resistance. Notably, we identified transcriptionally active but genomically low-abundance taxa, highlighting the importance of measuring the transcriptional activities of strains beyond species composition. Lineage-aware differential expression analysis uncovered strain-specific adaptations to inflammatory environments. This strain-resolved approach provides a powerful framework for understanding microbial functional heterogeneity and identifying specific bacterial lineages that could potentially contribute to disease pathogenesis, potentially guiding more targeted microbiome-based therapeutic interventions.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Role of CH–π Interactions in Protein-Carbohydrate Binding</title>
<link href="https://hdl.handle.net/1721.1/164573" rel="alternate"/>
<author>
<name>Keys, Allison M.</name>
</author>
<id>https://hdl.handle.net/1721.1/164573</id>
<updated>2026-01-21T03:24:35Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">The Role of CH–π Interactions in Protein-Carbohydrate Binding
Keys, Allison M.
Protein-carbohydrate binding is essential for biological processes, including cellular recognition and immune signaling. Binding is driven by several types of non-covalent interactions: hydrogen bonding, metal ion coordination, and the less well-understood CH–π interactions. CH–π interactions are pervasive in protein-carbohydrate binding sites and have emerged as critical drivers of protein–carbohydrate recognition; however, the energetics of CH–π stacking interactions, their orientational landscapes, and their interplay with other non-covalent interactions have been unclear. &#13;
In this thesis, I identified carbohydrate-aromatic CH–π stacking interactions from crystallographic structures in the Protein Data Bank. I performed quantum mechanical calculations to quantify interaction energies and found that CH–π stacking interactions can be more favorable than hydrogen bonds. Using atomistic simulations, I also demonstrated that CH–π stacking interactions are necessary for human galectin-3 binding to lactose. To assess the orientational landscape of CH–π stacking interactions, I evaluated the orientations of CH–π stacking interactions formed by β-D-galactose and found that numerous orientations are highly favorable. I then identified carbon atom distances that define an orientational landscape for these interactions. To assess the interplay between non-covalent interactions in protein-carbohydrate binding sites, I used CH–π distance features to bias metadynamics simulations of a curated set of protein–β-D-galactoside complexes. From these simulations, I found that while bound carbohydrates sample many CH–π stacking orientations, the hydrogen bonds in the protein binding site drive the optimal orientation of each ligand. Longer carbohydrate ligands with more hydrogen bonding constraints have more specific orientational dependence, while ligands in binding sites with a reduced number of hydrogen bonds occupy a broader range of orientations. Unlike hydrogen bonds, CH–π stacking interactions confer orientational flexibility: enzymes can exploit multiple CH–π stacking interactions to facilitate the translocation of polysaccharide substrates. Extending this analysis to other carbohydrates, I showed that carbohydrate stereochemistry drives the orientational preferences of CH–π stacking interactions; however, there is also a tradeoff between the presence of hydrogen bonds to charged amino acids and the CH–π interaction strength for each carbohydrate. Overall, this thesis demonstrates that CH–π interactions are favorable and confer high orientational flexibility and that hydrogen bonds act in concert with CH–π interactions to stabilize protein-carbohydrate binding. Tuning the number and positions of these interactions through protein engineering should alter protein selectivity and ligand movement in protein binding sites.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantum Networking using Waveguide Quantum Electrodynamics</title>
<link href="https://hdl.handle.net/1721.1/164572" rel="alternate"/>
<author>
<name>Almanakly, Aziza</name>
</author>
<id>https://hdl.handle.net/1721.1/164572</id>
<updated>2026-01-21T03:23:30Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Quantum Networking using Waveguide Quantum Electrodynamics
Almanakly, Aziza
The architectural principle of modularity enables the construction of complex systems from simpler components, each responsible for a particular function. The quantum computer is an intricate system comprising fragile, error-prone parts known as qubits. Entanglement distribution across a network of non-local processing modules facilitates robust and extensible quantum computation. In modular quantum architectures, photons are natural quantum information carriers which propagate through interconnects between processing nodes. In this thesis, we engineer a quantum interconnect between superconducting modules underpinned by the physics of waveguide Quantum Electrodynamics (wQED). First, we realize a multi-qubit module that exploits quantum interference to emit microwave photons into a waveguide with a specified propagation direction. Next, we construct the quantum interconnect by coupling two modules to a common waveguide and demonstrate directional (chiral) photon emission and absorption. Finally, using this chiral quantum interconnect, we generate remote entanglement, establishing a key resource for distributed quantum computation in an all-to-all network architecture.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Large Language Models and Quantifying the Regulatory Expenses of Affordable Housing: A Thorough Examination Utilizing Generative Assessment</title>
<link href="https://hdl.handle.net/1721.1/164571" rel="alternate"/>
<author>
<name>Xu, Bangjie</name>
</author>
<id>https://hdl.handle.net/1721.1/164571</id>
<updated>2026-01-21T04:08:08Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Large Language Models and Quantifying the Regulatory Expenses of Affordable Housing: A Thorough Examination Utilizing Generative Assessment
Xu, Bangjie
This thesis presents an innovative methodology using Large Language Model-based methods to extract and quantify housing regulations from municipal zoning codes, making possible the most comprehensive examination of regulatory costs at the municipal level across California to date. A multi-staged extraction framework is devised that delivers 85-95% accuracy in the identification and standardization of complex regulatory requirements from legal documents. Applying this methodology to over twenty California cities over the period 2015-2025, it is estimated that regulatory constraints raise the cost of developing a housing unit by roughly between 5% to 10% (or $50,000 and $100,000+) per housing unit, with the most acute constraints in the state’s coastal metros. This method is used to find that factors such as regulation costs limit housing supply elasticity from 1.24 in low-regulation jurisdictions to 0.08 in high-regulation areas. The LLM-based framework allows us to conduct analyses at an unprecedented scale and granularity and to reveal, for example, that the relaxation of regulation by streamlining policies like the Los Angeles Transit Oriented Communities program boosts housing production in eligible zoned areas by 43%. This study makes significant contributions to the restructuring of California’s housing regulation system in response to the affordability crisis, and its methodology presents a replicable tool for regulatory analysis in other policy domains.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Essays in Macro-Finance</title>
<link href="https://hdl.handle.net/1721.1/164570" rel="alternate"/>
<author>
<name>Batista, Quentin</name>
</author>
<id>https://hdl.handle.net/1721.1/164570</id>
<updated>2026-01-21T03:24:44Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Essays in Macro-Finance
Batista, Quentin
In Chapter 1 (joint with J.R. Scott), we revisit the high-frequency and narrative approaches to estimating the effects of monetary policy shocks. We find that state-of-the-art estimates using both approaches are biased: high-frequency estimates due to nonlinear predictability and narrative estimates due to regularization. To correct for the bias in these approaches, we propose a new estimation procedure called LP-DML that combines ideas from double/debiased machine learning with the local projections framework. We find that LP-DML results in significantly smaller effects of monetary policy on macroeconomic outcomes. In Chapter 2 (joint with Taisuke Nakata and Takeki Sunakawa), we study the following question: how a central bank credibly implement a ”lower-for-longer” strategy? To answer this question, we analyze a series of optimal sustainable policy problems—indexed by the duration of reputational loss—in a sticky-price model with an effective lower bound (ELB) constraint on nominal interest rates. We find that, even when the central bank lacks commitment, the central bank can still credibly keep the policy rate at the ELB for an extended period though not as extended as under the optimal commitment policy—and meaningfully mitigate the adverse effects of the ELB constraint on economic activity. In Chapter 3, I examine the impact of central bank real estate purchases on financial markets, focusing on the Bank of Japan’s (BoJ) intervention in the Real Estate Investment Trust (REIT) market. Using a regression discontinuity design that exploits a discontinuity in the BoJ’s policy rule, I find that a typical intervention — amounting to about 0.014% of market capitalization — leads to an increase of 0.1% to 0.2% of REIT prices in the hours following the intervention. However, at longer horizons, the interventions do not have a significant effect on REIT prices. These findings suggest that the BoJ did not achieve the program’s intended objective of significantly reducing the risk premium on real estate assets.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Toward an Integrative Study of Human-AI Interaction</title>
<link href="https://hdl.handle.net/1721.1/164569" rel="alternate"/>
<author>
<name>Alsobay, Mohammed</name>
</author>
<id>https://hdl.handle.net/1721.1/164569</id>
<updated>2026-01-21T03:24:10Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Toward an Integrative Study of Human-AI Interaction
Alsobay, Mohammed
As artificial intelligence (AI) systems are increasingly embedded in the workflows of individuals and groups, designers and researchers of human-AI interaction (HAI) navigate a vast design space of possible configurations, making decisions that span algorithmic parameters, interface choice, and interaction protocols. This thesis develops an integrative approach that examines how design factors combine and interact to determine the outcomes of human-AI collaboration. &#13;
&#13;
Chapter 1 synthesizes prior HAI research into a coherent design space framework encompassing algorithms, interfaces, users, and task settings, motivating a research program for systematic exploration of interdependencies between these factors. Chapters 2 and 3 turn to group-AI interaction through large-scale behavioral experiments. Chapter 2 investigates how social information---both direct conversation and peer behavior indicators---affects individual reliance on algorithmic decision support. The study reveals that while social information modulates the effects of performance feedback and model explanations on reliance, it does not improve predictive accuracy, illuminating critical tensions between social mechanisms and system design. Chapter 3 examines large language models as facilitators of group deliberation in hidden profile tasks. While LLM facilitation increased information sharing volume, density, and breadth, it did not improve decision quality, highlighting fundamental challenges in group-AI system design beyond information aggregation.&#13;
&#13;
Chapter 4 advances an integrative approach to HAI research, emphasizing shared design spaces, systematic exploration strategies, and predictive models that generalize across contexts. The chapter provides methodological guidance and a tractable roadmap for advancing this integrative research agenda, laying the foundation for a more context-aware science of human-AI collaboration.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Leveraging design to build with less: Evaluating the embodied carbon reduction potential of architectural design across scales</title>
<link href="https://hdl.handle.net/1721.1/164568" rel="alternate"/>
<author>
<name>Feickert, Kiley</name>
</author>
<id>https://hdl.handle.net/1721.1/164568</id>
<updated>2026-01-21T03:24:40Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Leveraging design to build with less: Evaluating the embodied carbon reduction potential of architectural design across scales
Feickert, Kiley
Reducing embodied carbon (EC) in structural systems -- the most significant contributor to EC in a building -- is urgent to address the simultaneous need to reduce global warming and increase urban density. Much of the policy and research to date to reduce EC has focused on material-scale interventions or substitutions. However, EC depends on both: 1) the carbon intensity of the processes used to manufacture construction materials, and 2) the volume of raw materials required. Architects have significant agency to reduce the volume of structural materials in a building (and the resulting emissions) since the required quantity depends on design decisions architects make, including column spacing, structural typology, massing, etc. To date, most methods used to estimate EC during early-stage design do not: 1) integrate with architects’ existing design workflows, 2) evaluate multiple material systems simultaneously, and/or 3) include structural analysis to estimate material quantities. This functionality is critical so that designers can understand which decisions EC is sensitive to and evaluate design and EC tradeoffs before significant carbon is locked in.&#13;
&#13;
To address this problem, this dissertation presents a method towards transparent estimation of structural material quantities, intending to inform architectural design and policy, or other emerging EC standards. This method is used to contribute an analysis of the effectiveness of emerging U.S. EC policies, which focus on different scales of intervention, at the building scale. These policies are evaluated in isolation and in combination with strategic design levers that take advantage of structural mechanics to reduce material quantities for various building configurations and material systems. It finds that the most prominent policy approach, “Buy Clean” materials, only reduces EC by ~9% and ~16% for steel and concrete systems, respectively, compared to strategic design choices that have the potential to yield savings of up to ~79%. This dissertation also identifies building massing as a key lever in the EC outcomes of structural systems and proposes a method to quantify the impact of massing using automated structural design and analysis. It finds that in some situations, cantilevered massing typologies can be materialized for no carbon penalty if efficient configurations are used. Indeed, if inefficient configurations are used, they can incur a significant carbon penalty (2.4x) compared to normative massing. The presented results highlight the potential of design to reduce demand-side EC across scales.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Generalizable Robot Manipulation through Unified Perception, Policy Learning, and Planning</title>
<link href="https://hdl.handle.net/1721.1/164567" rel="alternate"/>
<author>
<name>Fang, Xiaolin</name>
</author>
<id>https://hdl.handle.net/1721.1/164567</id>
<updated>2026-01-21T03:23:49Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Generalizable Robot Manipulation through Unified Perception, Policy Learning, and Planning
Fang, Xiaolin
Advancing robotic manipulation to achieve generalization across diverse goals, environments, and embodiments is a critical challenge in robotics research. While the availability of data and large-scale training has brought exciting progress in robotics manipulation, current methods often struggle with generalizing to unseen, unstructured environments and solving long-horizon tasks. In this thesis, I will present my work in robot learning and planning that enables multi-step manipulation in partially observable environments, towards general-purpose embodied agents. Specifically, I will talk about my work in 1) constructing a modular framework that estimates affordances with learned perception models with task-and-motion-planning (TAMP) for object rearrangement in unstructured scenes, 2) learning generative diffusion models of robot skills, which can be composed to solve unseen combination of environmental constraints through infeference-time optimization, 3) leveraging large vision-language models (VLMs) in building task-oriented visual abstractions, allowing skills to generalize across different environments with only 5 to 10 demonstrations. Together, these approaches contribute to the generality and scalability of embodied agents towards solving real-world manipulation in unstructured environments.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Towards High-Dimensional Generalization in Neural Networks</title>
<link href="https://hdl.handle.net/1721.1/164566" rel="alternate"/>
<author>
<name>Boopathy, Akhilan</name>
</author>
<id>https://hdl.handle.net/1721.1/164566</id>
<updated>2026-01-21T03:24:21Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Towards High-Dimensional Generalization in Neural Networks
Boopathy, Akhilan
Neural networks excel in a wide range of applications due to their ability to generalize beyond training data. However, their performance degrades on high-dimensional tasks without large-scale data, a challenge known as the curse of dimensionality. This thesis addresses this limitation by pursuing three key objectives aimed at understanding and improving neural network generalization. 1. We aim to investigate the scaling laws underlying generalization in neural networks including double descent, a phenomenon in which as a model’s capacity or training data is increased, the test error temporarily increases at a certain point before continuing to decrease. In particular, we will have two goals: 1) a better understanding of when double descent can and cannot be empirically observed and 2) a better understanding of scaling laws with respect to training time. 2. Inductive bias refers to the set of assumptions a learning algorithm makes to predict outputs on inputs it has not encountered. We propose quantifying the amount of inductive bias required for a model to generalize well with a fixed amount of training data. By developing methods to measure inductive bias, we can assess how much information model designers need to incorporate into neural networks to improve their generalizability. This quantification can guide the design of harder tasks that better test a model’s generalization. 3. Finally, we aim to develop new methods to enhance neural network generalization, particularly focusing on reducing the exponential number of training samples required for high-dimensional tasks. This involves creating algorithms and architectures that can learn effectively from limited data by incorporating stronger inductive biases. In particular, we will focus on two inductive biases in particular: 1) learning features of the training loss landscape correlated with generalization and 2) using modular neural network architectures. We expect that these techniques can improve generalization, particularly in high-dimensional tasks. Together, these contributions aim to deepen our theoretical understanding and develop practical tools for enabling neural networks to generalize effectively from limited data.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Remote Control: Art, Technology, and the Politics of Distance (1966-1972)</title>
<link href="https://hdl.handle.net/1721.1/164565" rel="alternate"/>
<author>
<name>Wexelblatt, Nina Rrose</name>
</author>
<id>https://hdl.handle.net/1721.1/164565</id>
<updated>2026-01-21T03:23:42Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Remote Control: Art, Technology, and the Politics of Distance (1966-1972)
Wexelblatt, Nina Rrose
Platforms carrying dancers across a stage, doors sliding open as if by magic, and simultaneous Happenings in Berlin and Buenos Aires: remote control promised thrills as postwar artists experimented with technologies of distance. Focused on the half-decade between 1966 and 1972, this thesis intervenes in the history of art and technology to argue that a desire to activate the supposedly empty space between artist, art object, and audience effected a new fixation on the nature of that distanced interval, leading artists to incorporate actual remote control technologies into their work. This impulse grew from an unorthodox reading of the work of modernist painters, particularly Jackson Pollock. Where a generation of critics had canonized “presentness” and medium specificity, a younger cohort read the work differently, finding in it permission to embrace remoteness, intermedia experimentation, and political messaging. &#13;
&#13;
Artists including Robert Rauschenberg, Allan Kaprow, Marta Minujín, Wolf Vostell, and Carolee Schneemann, among others, undertook radical experiments with remote systems, often in collaboration with engineers. Theirs was not a technocratically neutral position; this thesis demonstrates that these artists consciously cast the “remoteness” enabled by new technologies as a charged concept, just as controlled distance emerged to define military and industrial relations on domestic, urban, and geopolitical scales. Remote control enabled artists to incorporate, not reject, the expanding frames of reference taking place outside of the sanctioned spaces of the art studio or gallery, from automation to satellite communications to warfare. Artists’ uses of remote technologies intentionally surfaced questions about critical power relations, tying the stakes of their work to debates about the future of U.S. social and economic control and development. In doing so, it also crystallized a newly diffuse, participatory artistic subject: the controller.&#13;
&#13;
The introduction theorizes “remote control” in historical and historiographic context. A second chapter follows Automation House (1970-1972), a Manhattan art space that combined labor mediation and media art to experiment with the American postindustrial labor economy to come. A third chapter centers on Three Country Happening (1966), which took place in New York, Buenos Aires, and Berlin, supposedly mediated by satellite—foiled by the uneven development of the Cold War-era satellite system itself. A fourth chapter delves into Snows (1967), a multimedia performance in protest of the war in Vietnam, which incorporated audience-controlled feedback sensors. A concluding discussion traces the ongoing nature of remote control as it implicates artists and audiences alike in a network of shared responsibility.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reimagining Public Land: Municipal Land Use to Ease Housing Crisis in Boston</title>
<link href="https://hdl.handle.net/1721.1/164564" rel="alternate"/>
<author>
<name>Murphy, Ryan</name>
</author>
<id>https://hdl.handle.net/1721.1/164564</id>
<updated>2026-01-21T04:08:06Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Reimagining Public Land: Municipal Land Use to Ease Housing Crisis in Boston
Murphy, Ryan
Boston is in the midst of a severe housing crisis, driven by decades of underproduction, rising construction costs, restrictive zoning, and an inelastic real estate market that has resulted in persistent affordability challenges. This thesis explores the untapped potential of city-owned land as a powerful tool to increase housing supply and affordability in Boston. Using Boston’s 2022 Citywide Land Audit and detailed development assumptions, the analysis estimates that between 19,000 and 31,000 new housing units could be constructed across city-controlled parcels, including between 3,200 and 6,100 affordable units under the current Inclusionary Development Policy. The research draws on case studies from peer cities such as Chicago and Atlanta where municipal land has been successfully leveraged through transparent disposition processes, fast-tracked entitlements, and flexible affordability models. It argues for a policy shift in Boston toward a more streamlined, market-aware, and scalable land release strategy that prioritizes speed, cross-subsidization, and financial feasibility. Key recommendations include expanding the Welcome Home, Boston program to include mixed-income and rental housing, implementing predictable RFP cycles, offering tax abatements, and expediting the entitlement process.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modular Zipping for Transformable and Dynamic Systems</title>
<link href="https://hdl.handle.net/1721.1/164563" rel="alternate"/>
<author>
<name>Hagemann, Niklas</name>
</author>
<id>https://hdl.handle.net/1721.1/164563</id>
<updated>2026-01-21T04:08:01Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Modular Zipping for Transformable and Dynamic Systems
Hagemann, Niklas
There is a need for products, machines and environments that can change shape, transform and evolve according to their use. This thesis proposes the design of a simple, modular actuator based on reversible folding and interlocking (zipping) of flexible 3D printed strips. The proposed zipper design allows for continuous control states between a compact and fully deployed state. The modular actuators can be integrated into a variety of systems to enable compact, shape- and stiffness-changing structures, robots and other devices. Designs are presented for single- and double-zipper modules using the same basic zipper design. The modules can be used as modular components of compact robotic systems with the ability to expand and contract according to their environment, or used as adjustable structural components to create deployable, shape-and stiffness-changing objects. The zipper design points the way towards simplified mono-material components that embed transformation and reversibility into everyday devices, products and spaces, and enabling objects that are as easy to transform, reconfigure and reverse as they are to manufacture.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Embodied Representation of Time in Virtual Reality</title>
<link href="https://hdl.handle.net/1721.1/164562" rel="alternate"/>
<author>
<name>Kim, Suwan</name>
</author>
<id>https://hdl.handle.net/1721.1/164562</id>
<updated>2026-01-21T04:08:03Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Embodied Representation of Time in Virtual Reality
Kim, Suwan
Recent advancements in 3D graphics and AI-assisted generative techniques have accelerated the creation of realistic scenes for immersive technologies, including virtual reality, yet most systems continue to encode time as a linear parameter, relying on timeline-based playback. Mesh-based representations are typically constrained by fixed topologies and rely on predefined animations, which limit their capacity to encode temporal change as a spatial or perceptual phenomenon. In reality, human experience of time is embodied and dynamic, perceived through interaction and memory. Existing digital systems fail to capture this dimension, reducing time to a passive parameter. This thesis proposes a framework for representing time as an embodied and spatial dimension within virtual reality by embedding it directly into the geometry and interaction logic of point cloud data. The system consists of three parts: (1) processing 2D images into layered volumetric point clouds to enable structural fluidity and temporally responsive spatial form; (2) enabling perceptual and spatial modulation in response to user distance and contact, with color influencing the character of change and opacity shaping its perceptual reveal at both global and local scales; and (3) enabling real-time visualization of modulated point cloud through a custom pipeline optimized for mobile virtual reality. By embedding temporal dynamics directly into geometry and interaction logic, this thesis contributes a novel representational approach to spatiotemporal modeling in immersive systems. By doing so, we create new opportunities for architectural visualization, interactive simulations, game design, and reimagining how we perceive and construct digital spaces.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Essays on Behavioral Economics and Sophisticated Procrastination</title>
<link href="https://hdl.handle.net/1721.1/164561" rel="alternate"/>
<author>
<name>Chen, Xi</name>
</author>
<id>https://hdl.handle.net/1721.1/164561</id>
<updated>2026-02-20T03:14:30Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Essays on Behavioral Economics and Sophisticated Procrastination
Chen, Xi
Procrastination is a widespread yet complex behavior that resists simple explanation. This dissertation integrates theoretical modeling with experimental evidence to examine procrastination through the lens of sophisticated decision-making. It reframes procrastination not merely as a deviation from rationality, but as a behavior shaped by strategic trade-offs, self-awareness, and individual heterogeneity. The first essay develops a theoretical model of Perfectionistic Procrastination, proposing that individuals with high internal standards may delay tasks not as a simple lapse in self-control, but as a strategic response to the anticipated costs of sustained effort. In this framework, deadlines act as external constraints that help perfectionists limit open-ended striving and bring tasks to completion. An accompanying experiment tests the model’s prediction and finds that perfectionists are more likely to prefer deadlines. These results suggest that, in some cases, procrastination may reflect a structured strategy rather than a purely irrational failure of self-control. The second essay explores the phenomenon of Sophisticated Procrastination, challenging traditional models that attribute procrastination to naïveté. Instead, it proposes that even individuals who are aware of their tendency to delay may struggle to act on that awareness. Two experimental studies using a menu-choice framework examine how people choose task timings. In Study 1, participants preferred earlier deadlines when flexibility was available but shifted toward later options when required to commit, revealing a gap between intention and action. Study 2 identified diverse patterns of deadline preferences: while many participants actively avoided the latest possible deadline, their hesitation to commit to any specific deadline suggests a deeper tension rooted in uncertainty or discomfort with commitment. These findings provide early empirical support for Sophisticated Procrastination, indicating that self-awareness alone may not be sufficient to overcome procrastination. The third essay introduces the idea of Prosocial Procrastination, describing the tendency to delay tasks that benefit others, such as charitable activities, more than those with self-interested outcomes. Using two distinct experimental designs, one based on conjoint analysis and the other on single-attribute choice, the studies show that individuals are more likely to prefer longer deadlines when working for a charity than when working for themselves. These findings offer suggestive evidence for Prosocial Procrastination and contribute to the growing literature on the intersection of social preferences and time preferences.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Patent Visibility and the Diffusion of Trapped Knowledge:&#13;
Evidence from US Grants</title>
<link href="https://hdl.handle.net/1721.1/164560" rel="alternate"/>
<author>
<name>Yao, Randol H.</name>
</author>
<id>https://hdl.handle.net/1721.1/164560</id>
<updated>2026-01-21T04:08:04Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Patent Visibility and the Diffusion of Trapped Knowledge:&#13;
Evidence from US Grants
Yao, Randol H.
Valuable knowledge developed in one part of the world may remain “trapped" locally due to frictions in how knowledge is recognized and shared globally. This paper examines how granting US patents to foreign-origin inventions—by elevating their visibility and credibility— untraps the knowledge and facilitates global diffusion. Using examiner leniency as an instrument, complemented by a difference-in-differences design, I find that US grants of home country patents significantly increase both the likelihood and intensity of forward citations, including marked increases from third countries. A novel measure of “trappedness” reveals that knowledge from historically more trapped countries and sectors sees larger diffusion benefits after the US grants. These findings highlight the central role of the US as a platform of global knowledge recognition and diffusion, particularly in turning overlooked ideas into globally relevant innovations.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Characterization of the East China Sea Continental Shelf&#13;
Circulation Northeast of Taiwan Surrounding Mien-Hua Canyon</title>
<link href="https://hdl.handle.net/1721.1/164559" rel="alternate"/>
<author>
<name>Rafferty, Lieutenant Commander Keefe</name>
</author>
<id>https://hdl.handle.net/1721.1/164559</id>
<updated>2026-01-21T04:07:59Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Characterization of the East China Sea Continental Shelf&#13;
Circulation Northeast of Taiwan Surrounding Mien-Hua Canyon
Rafferty, Lieutenant Commander Keefe
Submarine canyons have a proven and direct influence on continental shelf circulation and flow dynamics, especially in relation to western boundary currents. There are two key circulation features northeast of Taiwan on the East China Sea continental shelf: (1) the cold dome, a cyclonic feature that appears primarily in summer and is associated with upwelling, and (2) Kuroshio intrusions onto the continental shelf in the vicinity of Mien-Hua Canyon. This paper is a descriptive physical oceanography study with a focus on characterizing the circulation patterns northeast of Taiwan surrounding Mien-Hua Canyon, closely correlating these patterns with the migration of the Kuroshio and its variability and intrusions onto the southern East China Sea continental shelf, leading to the formation of the cold dome. The Institute of Oceanography at the National Taiwan University and WHOI executed a joint international field survey at Mien-Hua Canyon aiming to improve the understanding of canyon flow dynamics between the East China Sea continental shelf northeast of Taiwan and the Kuroshio as the North Pacific Gyre westward boundary current. This joint oceanographic expedition expands on previous joint US/Taiwan physical oceanographic and ocean acoustic studies in the China Seas dating back to ASIAEX in the South China Sea during 2000-2001 and QPE in the East China Sea during 2008-2009. The strengthening and weakening of Kuroshio transport and intensity northeast of Taiwan is closely correlated to the timescales of mesoscale westward propagating eddies arriving to the East Taiwan Channel. When a canyon has a Rossby number ~1 or Rossby radius equivalent to the width of the canyon in a region of left-bounded flow, induced cyclonic flow will experience an upwelling regime within the canyon system with dominant upwelling located at the downstream canyon rim vertically constrained by Rossby Height. Observational analysis of canyon bottom-moored ADCPs and vertical temperature arrays supports previous theory on submarine canyon dynamics on a continental shelf. Satellite sea surface temperature and absolute dynamic topography observations render the formation of a cold dome northeast of Taiwan coincident with this joint oceanographic survey.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>From Wallets to Wages: Consumer Income, Job Design, and Pay Disparities</title>
<link href="https://hdl.handle.net/1721.1/164558" rel="alternate"/>
<author>
<name>Roh, Soohyun</name>
</author>
<id>https://hdl.handle.net/1721.1/164558</id>
<updated>2026-01-21T04:08:01Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">From Wallets to Wages: Consumer Income, Job Design, and Pay Disparities
Roh, Soohyun
Pay differences between organizations are a key source of wage inequality. I propose a novel account of these differences by starting from the consumers that these businesses serve. Firms that serve high-income consumers specialize jobs into higher-paying and higher-skilled positions focused on quality, while those that serve lower-income consumers emphasize cost minimization by requiring workers to perform a wider range of general tasks. Matching consumer foot traffic data and establishment-level wage records, I find that establishments serving higher-income consumers pay their workers more. This effect holds comparing among establishments in the same neighborhoods and industries. Longitudinally, establishments increase wages when they shift toward higher-income customers. Analysis of online job postings further reveals that jobs at higher-income-serving firms involve a narrower set of tasks that command higher market value. These findings show how consumer markets shape firms’ internal job design and contribute to pay inequality across organizations.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Fate of Federal Buildings: Real Estate Disposition and the Future of Washington, D.C.</title>
<link href="https://hdl.handle.net/1721.1/164557" rel="alternate"/>
<author>
<name>Mulcahy, Robby L.</name>
</author>
<id>https://hdl.handle.net/1721.1/164557</id>
<updated>2026-01-21T04:07:56Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">The Fate of Federal Buildings: Real Estate Disposition and the Future of Washington, D.C.
Mulcahy, Robby L.
The United States federal government is the largest property owner in the country, with more than 370 million square feet of real estate under its control. Much of this portfolio is outdated, underutilized, and located in the urban cores of American cities. Nowhere is this more evident—or more consequential—than in Washington, D.C., where the federal government controls approximately 27% of the office market. As federal agencies adopt hybrid work models, and as the operational needs of government evolve, the existing real estate footprint has become increasingly inefficient, expensive, and misaligned with civic and market realities. This thesis investigates the opportunity to rethink federal land ownership and management as a catalyst for urban regeneration, civic stewardship, and housing production.&#13;
&#13;
Using the James V. Forrestal Building as a focal case study, the research examines the historical, policy, and spatial dynamics that have led to the current moment of reckoning. Located on Independence Avenue SW, straddling 10th Street between the National Mall and the Wharf, Forrestal is emblematic of the postwar federal design ethos: monumental, inward-facing, and hostile to street life. Once a symbol of bureaucratic permanence, the building now stands as a physical and symbolic barrier to urban connectivity and civic vitality. The case of Forrestal is used to explore broader questions: How can the federal government dispose of surplus property more effectively? What policy tools exist—or are needed—to unlock value and enable redevelopment? And what role should cities play in shaping the outcomes of federal land disposition?&#13;
&#13;
The thesis employs a mixed-methods approach that includes policy analysis, stakeholder interviews, precedent case studies, and spatial analysis of Southwest D.C. The work identifies a range of obstacles to effective disposition, including Title V of the McKinney-Vento Homeless Assistance Act, opaque OMB budget scoring rules, jurisdictional fragmentation, and the absence of a coordinating authority across federal agencies. It also identifies key lessons from successful projects such as The Yards, Walter Reed, and the Volpe Center, where thoughtful structuring and strong federal-local partnerships enabled transformative redevelopment of surplus land.&#13;
&#13;
The thesis concludes with ten detailed recommendations for reform, including reauthorization of the Federal Assets Sale and Transfer Act (FASTA), modernization of Title V and OMB scoring, the creation of Federal Redevelopment Zones, and the prioritization of housing, civic infrastructure, and design quality in disposition strategy. It argues that the federal government must shift from a passive landlord to an active steward of public land—one that collaborates with cities, integrates public benefit, and reflects democratic values through the built environment.&#13;
&#13;
In this moment of shifting federal needs, declining office demand, and urban transformation, the question is not whether federal real estate reform is needed—it is whether we will seize the opportunity. The fate of buildings like Forrestal will shape not only the skyline of Washington, D.C., but also the federal government’s legacy in America’s cities for generations to come.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analyst Incentives</title>
<link href="https://hdl.handle.net/1721.1/164556" rel="alternate"/>
<author>
<name>Green, Brice</name>
</author>
<id>https://hdl.handle.net/1721.1/164556</id>
<updated>2026-01-21T04:08:00Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Analyst Incentives
Green, Brice
Analyst forecasts have been shown to reflect substantial behavioral biases and predict a number of macroeconomic phenomena. While we typically treat reported forecasts as statistical expectations, under uncertainty the reported point estimate will be sensitive to the payoff structure facing the forecaster. Using data on careers from LinkedIn, I describe the incentive structures faced by analysts, shedding light the extent to which pay and career success are tied to performance. Further, I extend a causal estimator to identify credible counterfactual forecasts and provide tentative causal evidence of the relationship between forecast errors and promotions.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Maverick Neuroscientist: What Does a Life in Science Look Like Outside the Ivory Tower? : Dr. Eugenio Vargas-Pena is a renowned psychiatrist in Paraguay, who conducts neuroscience research without university ties, funding, or peer review. ls his embodiment of the gentleman scientist an alternate path for those who want to break away from institutionalized science?</title>
<link href="https://hdl.handle.net/1721.1/164555" rel="alternate"/>
<author>
<name>Chomik-Morales, Jessica</name>
</author>
<id>https://hdl.handle.net/1721.1/164555</id>
<updated>2026-01-21T04:07:57Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Maverick Neuroscientist: What Does a Life in Science Look Like Outside the Ivory Tower? : Dr. Eugenio Vargas-Pena is a renowned psychiatrist in Paraguay, who conducts neuroscience research without university ties, funding, or peer review. ls his embodiment of the gentleman scientist an alternate path for those who want to break away from institutionalized science?
Chomik-Morales, Jessica
This longterm narrative investigates the life and work of Dr. Eugenio Vargas-Peña, a neuropsychiatrist in Asunción, Paraguay who built a fully functional lab in his countryside home. Vargas-Peña conducts brain research independently, guided by decades of self-study, clinical practice, and an unwavering belief in the value of curiosity-driven inquiry. The piece interweaves historical context, character study, and personal narrative, using the author's own background in neuroscience and science communication to frame an inquiry into legitimacy, recognition, and alternative pathways in science. It asks: What defines a scientist today? Who gets to decide which ideas are taken seriously? And what are the consequences-creative or catastrophic-of working outside institutional boundaries? Through the lens of one man's eccentric yet earnest intellectual journey, this thesis invites broader reflection on the pressures shaping contemporary research and the enduring romance of unorthodox scholarship.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Machine Learning Systems for Unsupervised Time Series Anomaly&#13;
Detection</title>
<link href="https://hdl.handle.net/1721.1/164554" rel="alternate"/>
<author>
<name>Alnegheimish, Sarah</name>
</author>
<id>https://hdl.handle.net/1721.1/164554</id>
<updated>2026-01-21T03:23:36Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Machine Learning Systems for Unsupervised Time Series Anomaly&#13;
Detection
Alnegheimish, Sarah
Modern assets – from launched satellites to electric vehicles – output dense, multivariate time series data that must be monitored for deviations from “normal” behavior. This monitoring task is referred to as time series anomaly detection. The current state of the industry still depends on fixed or heuristic thresholds that often drown operators in false alarms, and can miss the subtle, context-dependent faults that matter most. This thesis addresses unsupervised time series anomaly detection as an end-to-end problem, asking how we can learn, evaluate, and deploy models that judiciously flag anomalies while remaining intuitive to the end user.&#13;
This thesis provides contributions in the form of both algorithms and systems. First, it introduces three models that enlarge the design space of unsupervised time series anomaly detection: TadGAN, which leverages adversarial reconstruction; AER, which unifies predictive&#13;
and reconstructive objectives in a single hybrid score; and MixedLSTM, which explicitly incorporates interdependencies to improve anomaly detection in multivariate time series. We propose two range-based evaluation metrics that quantify detection quality over temporal intervals. Second, it presents our system Orion, which abstracts anomaly detection pipelines as directed acyclic graphs of reusable primitives, providing user-friendly APIs and enabling interactive visual inspection. Building on this infrastructure, OrionBench performs periodic, fully reproducible benchmarks, producing leaderboards that align research innovations with the needs of end users. Third, the thesis explores a new paradigm – foundation models for unsupervised time series anomaly detection – by formulating SigLLM , which employs large language models and time series foundation models for zero-shot anomaly detection via prompting and forecasting. This paradigm indicates a promising path to developing scalable models for anomaly detection. Finally, beyond evaluating our systems on publicly available datasets, we provide extensive experiments on two industrial case studies that demonstrate improved detection accuracy and practical usability of our system.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Techniques for Reliability and Robustness in Integrated Electronic and Photonic Systems</title>
<link href="https://hdl.handle.net/1721.1/164553" rel="alternate"/>
<author>
<name>Chakraborty, Uttara</name>
</author>
<id>https://hdl.handle.net/1721.1/164553</id>
<updated>2026-01-21T03:23:15Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Techniques for Reliability and Robustness in Integrated Electronic and Photonic Systems
Chakraborty, Uttara
Reliability and robustness are key concerns in the development of novel electronic and photonic materials, devices, and systems. This thesis presents statistical and machine learning techniques for reliability analysis of heterogeneously-integrated systems, extraction of variations from photonic test structure measurements, making smart decisions about test configurations in the face of time and resource constraints, and robust design of photonic components. To estimate reliability model parameters from lifetime datasets where multiple underlying failure mechanisms are present, a differential evolution framework and a boundconstrained expectation maximization algorithm are developed; both these approaches significantly outperform the gradient-based L-BFGS-B algorithm. New schemes for strategic failure analysis on a subset of the failed units are presented, both for detecting the presence of a second failure mechanism and for improving two-mechanism reliability models. A regression-based protocol is also presented for optimally selecting reliability test conditions to verify physical failure mechanism models. A maximum-likelihood-estimation-based approach is demonstrated for the simultaneous extraction of waveguide index and thickness variations using integrated photonic direction couplers and Mach-Zehnder interferometers. Schemes are proposed for optimal selection of cut-back test structures and for propagation loss estimation with a Bayesian prior distribution for fiber-coupling error. Finally, a robust Bayesian optimization algorithm using a new tunable acquisition function is presented for photonic component design. The methods developed in this thesis are expected to be broadly applicable to a wide variety of electronic and photonic devices and systems.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Molecularly Thin Polyaramid Nanomechanical Resonators</title>
<link href="https://hdl.handle.net/1721.1/164552" rel="alternate"/>
<author>
<name>Gress, Hagen</name>
</author>
<author>
<name>Ritt, Cody L</name>
</author>
<author>
<name>Shomakhov, Inal</name>
</author>
<author>
<name>Altmisdort, Kaan</name>
</author>
<author>
<name>Quien, Michelle</name>
</author>
<author>
<name>Wei, Zitang</name>
</author>
<author>
<name>Lawall, John R</name>
</author>
<author>
<name>Boddeti, Narasimha</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<author>
<name>Bunch, J Scott</name>
</author>
<author>
<name>Ekinci, Kamil L</name>
</author>
<id>https://hdl.handle.net/1721.1/164552</id>
<updated>2026-01-17T06:32:32Z</updated>
<published>2025-12-03T00:00:00Z</published>
<summary type="text">Molecularly Thin Polyaramid Nanomechanical Resonators
Gress, Hagen; Ritt, Cody L; Shomakhov, Inal; Altmisdort, Kaan; Quien, Michelle; Wei, Zitang; Lawall, John R; Boddeti, Narasimha; Strano, Michael S; Bunch, J Scott; Ekinci, Kamil L
Two-dimensional polyaramids exhibit strong hydrogen bonding to create molecularly thin nanosheets analogous to graphene. Here, we report the first nanomechanical resonators made out of a two-dimensional polyaramid, 2DPA-1, with thicknesses as small as 8 nm. To fabricate these molecular-scale resonators, we transferred nanofilms of 2DPA-1 onto chips with previously etched arrays of circular microwells. We then characterized the thermal resonances of these resonators under different conditions. When there is no residual gas inside the 2DPA-1-covered microwells, the eigenfrequencies are well-described by a tensioned plate theory, providing the Young's modulus and tension of the 2DPA-1 nanofilms. With gas present, the nanofilms bulge up and mechanical resonances are modified due to the adhesion, bulging and slack present in the system. The fabrication and mechanical characterization of these first 2DPA-1 nanomechanical resonators represent a convincing path toward molecular-scale polymeric NEMS with high mechanical strength, low density, and synthetic processability.
</summary>
<dc:date>2025-12-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interferometric Deflection Analysis of Suspended 2D Polyaramid Thin Films</title>
<link href="https://hdl.handle.net/1721.1/164551" rel="alternate"/>
<author>
<name>Quien, Michelle</name>
</author>
<author>
<name>Ritt, Cody L</name>
</author>
<author>
<name>Garimella, Sanjay S</name>
</author>
<author>
<name>Gress, Hagen</name>
</author>
<author>
<name>Ekinci, Kamil L</name>
</author>
<author>
<name>Bunch, Joseph Scott</name>
</author>
<author>
<name>Strano, Michael S</name>
</author>
<id>https://hdl.handle.net/1721.1/164551</id>
<updated>2026-01-17T06:32:30Z</updated>
<published>2025-12-05T00:00:00Z</published>
<summary type="text">Interferometric Deflection Analysis of Suspended 2D Polyaramid Thin Films
Quien, Michelle; Ritt, Cody L; Garimella, Sanjay S; Gress, Hagen; Ekinci, Kamil L; Bunch, Joseph Scott; Strano, Michael S
The 2D nanofilm bulge test, which uses an Atomic Force Microscope (AFM) to measure the deflection of a suspended film under various conditions, has emerged as an important measurement platform for understanding mechanical, barrier, and permeability properties of 2D materials as thickness approaches the angstrom scale. The problem considered in this work is the limitation of such bulge analyses imposed by the AFM whereby dynamic measurements under high pressure, high temperature, and chemically corrosive conditions are limited. In this work, a technique is developed for measuring nanofilm deflection using only visible light interferometry. Both theoretical and semi‐empirical models are applied to translate multicolor interference patterns from broadband excitation into estimates of nano‐film deflection, allowing nanoscale precision in most cases. The technique and algorithm advanced in this work allows the use of widespread optical microscopy to widen the study of these important 2D nanofilm systems to more relevant conditions.
</summary>
<dc:date>2025-12-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantum One-Time Programs, Revisited</title>
<link href="https://hdl.handle.net/1721.1/164550" rel="alternate"/>
<author>
<name>Gupte, Aparna</name>
</author>
<author>
<name>Liu, Jiahui</name>
</author>
<author>
<name>Raizes, Justin</name>
</author>
<author>
<name>Roberts, Bhaskar</name>
</author>
<author>
<name>Vaikuntanathan, Vinod</name>
</author>
<id>https://hdl.handle.net/1721.1/164550</id>
<updated>2026-01-17T06:31:55Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Quantum One-Time Programs, Revisited
Gupte, Aparna; Liu, Jiahui; Raizes, Justin; Roberts, Bhaskar; Vaikuntanathan, Vinod
One-time programs (Goldwasser, Kalai and Rothblum, CRYPTO 2008) are programs that can be run on any single input of a user’s choice, but not on a second input. Classically, they are unachievable without trusted hardware, but the destructive nature of quantum measurements seems to provide an alternate path to constructing them. Unfortunately, Broadbent, Gutoski and Stebila (CRYPTO 2013) showed that even with quantum techniques,&#13;
a strong notion of one-time programs, similar to ideal obfuscation, cannot be achieved for any non-trivial quantum function. On the positive side, Ben-David and Sattath (Quantum, 2023) showed how to construct a quantum one-time program for a certain (probabilistic) digital signature scheme, under a weaker notion of one-time program security. There is a vast gap between achievable and provably impossible notions of one-time program security, and it is unclear what functionalities are one-time programmable and which are not, under the achievable notions of security.&#13;
In this work, we present new, meaningful, yet achievable definitions of one-time program security for probabilistic classical functions. We show how to construct one time programs satisfying these definitions for all functions in the classical oracle model and for constrained pseudorandom functions in the plain model. Finally, we examine the limits of these notions: we show a class of functions which cannot be one-time programmed in the plain model, as well as a class of functions which appears to be highly random given a single query, but whose quantum one-time program leaks the entire function even in the oracle model.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Learning the Closest Product State</title>
<link href="https://hdl.handle.net/1721.1/164549" rel="alternate"/>
<author>
<name>Bakshi, Ainesh</name>
</author>
<author>
<name>Bostanci, John</name>
</author>
<author>
<name>Kretschmer, William</name>
</author>
<author>
<name>Landau, Zeph</name>
</author>
<author>
<name>Li, Jerry</name>
</author>
<author>
<name>Liu, Allen</name>
</author>
<author>
<name>O'Donnell, Ryan</name>
</author>
<author>
<name>Tang, Ewin</name>
</author>
<id>https://hdl.handle.net/1721.1/164549</id>
<updated>2026-01-17T06:31:54Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Learning the Closest Product State
Bakshi, Ainesh; Bostanci, John; Kretschmer, William; Landau, Zeph; Li, Jerry; Liu, Allen; O'Donnell, Ryan; Tang, Ewin
We study the problem of finding a product state with optimal fidelity to an unknown n-qubit quantum state ρ, given copies of ρ. This is a basic instance of a fundamental question in quantum learning: is it possible to efficiently learn a simple approximation to an arbitrary state? We give an algorithm which finds a product state with fidelity ε-close to optimal, using N = npoly(1/ε) copies of ρ and poly(N) classical overhead. We further show that estimating the optimal fidelity is NP-hard for error ε = 1/poly(n), showing that the error dependence cannot be significantly improved. For our algorithm, we build a carefully-defined cover over candidate product states, qubit by qubit, and then demonstrate that extending the cover can be reduced to approximate constrained polynomial optimization. For our proof of hardness, we give a formal reduction from polynomial optimization to finding the closest product state. Together, these results demonstrate a fundamental connection between these two seemingly unrelated questions. Building on our general approach, we also develop more efficient algorithms in three simpler settings: when the optimal fidelity exceeds 5/6; when we restrict ourselves to a discrete class of product states; and when we are allowed to output a matrix product state.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Breaking the T^(2/3) Barrier for Sequential Calibration</title>
<link href="https://hdl.handle.net/1721.1/164548" rel="alternate"/>
<author>
<name>Dagan, Yuval</name>
</author>
<author>
<name>Daskalakis, Constantinos</name>
</author>
<author>
<name>Fishelson, Maxwell</name>
</author>
<author>
<name>Golowich, Noah</name>
</author>
<author>
<name>Kleinberg, Robert</name>
</author>
<author>
<name>Okoroafor, Princewill</name>
</author>
<id>https://hdl.handle.net/1721.1/164548</id>
<updated>2026-01-17T06:31:46Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Breaking the T^(2/3) Barrier for Sequential Calibration
Dagan, Yuval; Daskalakis, Constantinos; Fishelson, Maxwell; Golowich, Noah; Kleinberg, Robert; Okoroafor, Princewill
A set of probabilistic forecasts is calibrated if each prediction of the forecaster closely approximates the empirical distribution of outcomes on the subset of timesteps where that prediction was made. We study the fundamental problem of online calibrated forecasting of binary sequences, which was initially studied by Foster and Vohra. They derived an algorithm with O(T2/3) calibration error after T time steps, and showed a lower bound of Ω(T1/2). These bounds remained stagnant for two decades, until Qiao and Valiant improved the lower bound to Ω(T0.528) by introducing a combinatorial game called sign preservation and showing that lower bounds for this game imply lower bounds for calibration.&#13;
In this paper, we give the first improvement to the O(T2/3) upper bound on calibration error of Foster and Vohra.&#13;
We do this by introducing a variant of Qiao and Valiant’s game that we call sign preservation with reuse (SPR). We prove that the relationship between SPR and calibrated forecasting is bidirectional: not only do lower bounds for SPR translate into lower bounds for calibration, but algorithms for SPR also translate into new algorithms for calibrated forecasting. We then give an improved upper bound for the SPR game, which implies, via our equivalence, a forecasting algorithm with calibration error O(T2/3 − ) for some &gt; 0, improving Foster and Vohra’s upper bound for the first time. Using similar ideas, we then prove a slightly stronger lower bound than that of Qiao and Valiant, namely Ω(T0.54389). Our lower bound is obtained by an oblivious adversary, marking the first ω(T1/2) calibration lower bound for oblivious adversaries.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>PrEP attitudes, willingness, and preferences among men incarcerated in jail in Massachusetts</title>
<link href="https://hdl.handle.net/1721.1/164547" rel="alternate"/>
<author>
<name>Al Abosy, Jude</name>
</author>
<author>
<name>Kalavacherla, Sruthi</name>
</author>
<author>
<name>Koutoujian, Peter J.</name>
</author>
<author>
<name>Siddiqi, Kashif</name>
</author>
<author>
<name>Senst, Thomas</name>
</author>
<author>
<name>Caro, Jose</name>
</author>
<author>
<name>Grossman, Anna</name>
</author>
<author>
<name>Dong, Kimberly R.</name>
</author>
<id>https://hdl.handle.net/1721.1/164547</id>
<updated>2026-01-17T06:32:28Z</updated>
<published>2025-11-26T00:00:00Z</published>
<summary type="text">PrEP attitudes, willingness, and preferences among men incarcerated in jail in Massachusetts
Al Abosy, Jude; Kalavacherla, Sruthi; Koutoujian, Peter J.; Siddiqi, Kashif; Senst, Thomas; Caro, Jose; Grossman, Anna; Dong, Kimberly R.
Background People who inject drugs (PWID) are both disproportionately incarcerated and affected by HIV infection. Systemic inequities perpetuate the cyclic nature of injection drug use (IDU) and incarceration, and both IDU and incarceration are linked to higher rates of HIV infection. Pre-exposure prophylaxis (PrEP) is highly effective in HIV prevention and is currently available as a daily oral pill. Longer-acting PrEP options, such as injectables and implants, are also in development to improve accessibility and adherence. Despite these advancements, PrEP uptake remains low among PWID and individuals recently released from jail, and there is limited literature exploring the preferences for PrEP uptake within this population. Methods We conducted qualitative interviews using a semi-structured interview guide with 20 male participants (19 incarcerated in a Massachusetts jail and 1 recently released) to assess perceived HIV risk, knowledge of PrEP, barriers to PrEP uptake, and preferences for PrEP modality and frequency. The data were analyzed using a directed content analysis approach. Results Most participants were aware of their HIV risk but were largely unaware of PrEP and had never been educated about PrEP by a healthcare provider. Participants cited a lack of access to healthcare, stigma around HIV infection, and feasibility as barriers to uptake. While participants expressed interest in longer-acting PrEP, most preferred the oral pill due to distrust of the safety and efficacy of injectables and implants, countering the assumption that modality changes alone can improve low PrEP uptake. Conclusions Our findings underscore the urgent need for targeted education and interventions to improve HIV prevention in vulnerable populations impacted by incarceration. While long-acting injectables have been touted to help address barriers to accessing healthcare among this population, skepticism about the efficacy of long-acting injectables among this population may prevent these efforts. It is important to further research the willingness to uptake PrEP and modality preferences among this population to meet their needs.
</summary>
<dc:date>2025-11-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Search for a new scalar resonance decaying to a Higgs boson and another new scalar particle in the final state with two bottom quarks and two photons in proton-proton collisions at $$\sqrt{s}=13$$ TeV</title>
<link href="https://hdl.handle.net/1721.1/164546" rel="alternate"/>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Makarenko, V.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Benato, L.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Giordano, C.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Matthewman, M.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<id>https://hdl.handle.net/1721.1/164546</id>
<updated>2026-01-17T06:32:26Z</updated>
<published>2025-12-23T00:00:00Z</published>
<summary type="text">Search for a new scalar resonance decaying to a Higgs boson and another new scalar particle in the final state with two bottom quarks and two photons in proton-proton collisions at $$\sqrt{s}=13$$ TeV
Hayrapetyan, A.; Makarenko, V.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Benato, L.; Bergauer, T.; Dragicevic, M.; Giordano, C.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Matthewman, M.; Mikulec, I.
A search is presented for a new scalar resonance, X, decaying to a standard model Higgs boson and another new scalar particle, Y, in the final state where the Higgs boson decays to a $$\text{b}\overline{\text{b} }$$ pair, while the Y particle decays to a pair of photons. The search is performed in the mass range 240–1000 GeV for the resonance X, and in the mass range 70–800 GeV for the particle Y, using proton-proton collision data collected by the CMS experiment at $$\sqrt{s}=13$$ TeV, corresponding to an integrated luminosity of 132 fb−1. In general, the data are found to be compatible with the standard model expectation. Observed (expected) upper limits at 95% confidence level on the product of the production cross section and the relevant branching fraction are extracted for the X → YH process, and are found to be within the range of 0.05–2.69 (0.08–1.94) fb, depending on mX and mY. The most significant deviation from the background-only hypothesis is observed for X and Y masses of 300 and 77 GeV, respectively, with a local (global) significance of 3.33 (0.65) standard deviations.
</summary>
<dc:date>2025-12-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Public Service Provision and the Virtuous Circle: Evidence from Malawi</title>
<link href="https://hdl.handle.net/1721.1/164545" rel="alternate"/>
<author>
<name>Chen, Nuole</name>
</author>
<author>
<name>Grady, Christopher</name>
</author>
<author>
<name>Dulani, Boniface</name>
</author>
<author>
<name>Masumbu, Mwayi</name>
</author>
<author>
<name>Chiona, Busta</name>
</author>
<author>
<name>Bowers, Jake</name>
</author>
<author>
<name>Winters, Matthew S.</name>
</author>
<id>https://hdl.handle.net/1721.1/164545</id>
<updated>2026-01-17T06:32:24Z</updated>
<published>2025-12-29T00:00:00Z</published>
<summary type="text">Public Service Provision and the Virtuous Circle: Evidence from Malawi
Chen, Nuole; Grady, Christopher; Dulani, Boniface; Masumbu, Mwayi; Chiona, Busta; Bowers, Jake; Winters, Matthew S.
Many governments struggle to obtain the resources they need to govern effectively. In the virtuous circle model of state development, tax revenue allows governments to provide public goods and services to citizens, and citizens comply with taxation when governments provide sufficient levels of goods and services. The model, however, also suggests a vicious version of the circle, where citizens do not pay taxes, governments lack revenue to provide public goods and services, and citizens therefore continue to not pay taxes. Under this suboptimal equilibrium, governments cannot deliver on their governing and service provision mandates. We study whether a shock to public service provision in a major city in Malawi can induce citizens to pay taxes, thereby shifting the relationship between the city and its citizens from a vicious circle to a virtuous circle. With a difference-in-differences-style analysis, we show that households exposed to new government-provided waste collection expressed more trust in and better perceptions of the local government. Most importantly, these households were more likely to make tax payments. We find that this increase in tax payments largely came from people paying more of what they owed rather than from new taxpayers entering the rolls.
</summary>
<dc:date>2025-12-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>NonlinearSolve.jl: High-Performance and Robust Solvers for Systems of Nonlinear Equations in Julia</title>
<link href="https://hdl.handle.net/1721.1/164544" rel="alternate"/>
<author>
<name>Pal, Avik</name>
</author>
<author>
<name>Holtorf, Flemming</name>
</author>
<author>
<name>Larsson, Axel</name>
</author>
<author>
<name>Loman, Torkel</name>
</author>
<author>
<name>Rajput, Utkarsh</name>
</author>
<author>
<name>Sch?fer, Frank</name>
</author>
<author>
<name>Qu, Qingyu</name>
</author>
<author>
<name>Edelman, Alan</name>
</author>
<author>
<name>Rackauckas, Chris</name>
</author>
<id>https://hdl.handle.net/1721.1/164544</id>
<updated>2026-01-17T06:32:22Z</updated>
<published>2025-12-01T00:00:00Z</published>
<summary type="text">NonlinearSolve.jl: High-Performance and Robust Solvers for Systems of Nonlinear Equations in Julia
Pal, Avik; Holtorf, Flemming; Larsson, Axel; Loman, Torkel; Rajput, Utkarsh; Sch?fer, Frank; Qu, Qingyu; Edelman, Alan; Rackauckas, Chris
Efficiently solving nonlinear equations underpins numerous scientific and engineering disciplines, yet scaling these solutions for challenging system models remains a challenge. This paper presents NonlinearSolve.jl -- a suite of high-performance open-source nonlinear equation solvers implemented natively in the Julia programming language. NonlinearSolve.jl distinguishes itself by offering a unified API that accommodates a diverse range of solver specifications alongside features such as automatic algorithm selection based on runtime analysis, support for static array kernels for improved GPU computation on smaller problems, and the utilization of sparse automatic differentiation and Jacobian-free Krylov methods for large-scale problem-solving. Through rigorous comparison with established tools such as PETSc SNES, Sundials KINSOL, and MINPACK, NonlinearSolve.jl demonstrates robustness and efficiency, achieving significant advancements in solving nonlinear equations while being implemented in a high-level programming language. The capabilities of NonlinearSolve.jl unlock new potentials in modeling and simulation across various domains, making it a valuable addition to the computational toolkit of researchers and practitioners alike.
</summary>
<dc:date>2025-12-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Property Testing with Online Adversaries</title>
<link href="https://hdl.handle.net/1721.1/164543" rel="alternate"/>
<author>
<name>Ben Eliezer, Omri</name>
</author>
<author>
<name>Kelman, Esty</name>
</author>
<author>
<name>Meir, Uri</name>
</author>
<author>
<name>Raskhodnikova, Sofya</name>
</author>
<id>https://hdl.handle.net/1721.1/164543</id>
<updated>2026-01-17T06:32:20Z</updated>
<published>2025-12-02T00:00:00Z</published>
<summary type="text">Property Testing with Online Adversaries
Ben Eliezer, Omri; Kelman, Esty; Meir, Uri; Raskhodnikova, Sofya
The online manipulation-resilient testing model, proposed by Kalemaj, Raskhodnikova and Varma (Theory of Computing 2023), studies property testing in situations where access to the input degrades continuously and adversarially.    Our main contributions are as follows:    - An extension of the model, introducing \emph{batch queries} where multiple queries are made and answered between each round of manipulation, and \emph{fractional manipulation rate}, where the adversary makes less than one manipulation per round.    - New optimal testers for linearity testing of Boolean functions in the original online and offline models.        - A new lower-bound for testing low-degree of Boolean functions in the original model which can be overcome by an algorithm using batch queries.         - Efficient testers for local properties of sequences when the manipulation rate is fractional. Specifically, for sortedness, we show a sharp transition from optimal query complexity to the impossibility of testability, depending on the manipulation rate.
</summary>
<dc:date>2025-12-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Engineered yeast tolerance enables efficient production from toxified lignocellulosic feedstocks</title>
<link href="https://hdl.handle.net/1721.1/164542" rel="alternate"/>
<author>
<name>Lam, Felix H</name>
</author>
<author>
<name>Turanlı-Yıldız, Burcu</name>
</author>
<author>
<name>Liu, Dany</name>
</author>
<author>
<name>Resch, Michael G</name>
</author>
<author>
<name>Fink, Gerald R</name>
</author>
<author>
<name>Stephanopoulos, Gregory</name>
</author>
<id>https://hdl.handle.net/1721.1/164542</id>
<updated>2026-04-14T03:38:15Z</updated>
<published>2021-06-25T00:00:00Z</published>
<summary type="text">Engineered yeast tolerance enables efficient production from toxified lignocellulosic feedstocks
Lam, Felix H; Turanlı-Yıldız, Burcu; Liu, Dany; Resch, Michael G; Fink, Gerald R; Stephanopoulos, Gregory
Lignocellulosic biomass remains unharnessed for the production of renewable fuels and chemicals due to challenges in deconstruction and the toxicity its hydrolysates pose to fermentation microorganisms. Here, we show in Saccharomyces cerevisiae that engineered aldehyde reduction and elevated extracellular potassium and pH are sufficient to enable near-parity production between inhibitor-laden and inhibitor-free feedstocks. By specifically targeting the universal hydrolysate inhibitors, a single strain is enhanced to tolerate a broad diversity of highly toxified genuine feedstocks and consistently achieve industrial-scale titers (cellulosic ethanol of &gt;100 grams per liter when toxified). Furthermore, a functionally orthogonal, lightweight design enables seamless transferability to existing metabolically engineered chassis strains: We endow full, multifeedstock tolerance on a xylose-consuming strain and one producing the biodegradable plastics precursor lactic acid. The demonstration of “drop-in” hydrolysate competence enables the potential of cost-effective, at-scale biomass utilization for cellulosic fuel and nonfuel products alike.
</summary>
<dc:date>2021-06-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Removal of lycopene substrate inhibition enables high carotenoid productivity in Yarrowia lipolytica</title>
<link href="https://hdl.handle.net/1721.1/164541" rel="alternate"/>
<author>
<name>Ma, Yongshuo</name>
</author>
<author>
<name>Liu, Nian</name>
</author>
<author>
<name>Greisen, Per</name>
</author>
<author>
<name>Li, Jingbo</name>
</author>
<author>
<name>Qiao, Kangjian</name>
</author>
<author>
<name>Huang, Sanwen</name>
</author>
<author>
<name>Stephanopoulos, Gregory</name>
</author>
<id>https://hdl.handle.net/1721.1/164541</id>
<updated>2026-04-14T03:38:14Z</updated>
<published>2022-01-31T00:00:00Z</published>
<summary type="text">Removal of lycopene substrate inhibition enables high carotenoid productivity in Yarrowia lipolytica
Ma, Yongshuo; Liu, Nian; Greisen, Per; Li, Jingbo; Qiao, Kangjian; Huang, Sanwen; Stephanopoulos, Gregory
Substrate inhibition of enzymes can be a major obstacle to the production of valuable chemicals in engineered microorganisms. Here, we show substrate inhibition of lycopene cyclase as the main limitation in carotenoid biosynthesis in &lt;jats:italic&gt;Yarrowia lipolytica&lt;/jats:italic&gt;. To overcome this bottleneck, we exploit two independent approaches. Structure-guided protein engineering yields a variant, Y27R, characterized by complete loss of substrate inhibition without reduction of enzymatic activity. Alternatively, establishing a geranylgeranyl pyrophosphate synthase-mediated flux flow restrictor also prevents the onset of substrate inhibition by diverting metabolic flux away from the inhibitory metabolite while maintaining sufficient flux towards product formation. Both approaches result in high levels of near-exclusive β-carotene production. Ultimately, we construct strains capable of producing 39.5 g/L β-carotene at a productivity of 0.165 g/L/h in bioreactor fermentations (a 1441-fold improvement over the initial strain). Our findings provide effective approaches for removing substrate inhibition in engineering pathways for efficient synthesis of natural products.
</summary>
<dc:date>2022-01-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Isotope tracing in health and disease</title>
<link href="https://hdl.handle.net/1721.1/164540" rel="alternate"/>
<author>
<name>Dong, Wentao</name>
</author>
<author>
<name>Rawat, Eshaan S</name>
</author>
<author>
<name>Stephanopoulos, Gregory</name>
</author>
<author>
<name>Abu-Remaileh, Monther</name>
</author>
<id>https://hdl.handle.net/1721.1/164540</id>
<updated>2026-04-14T03:38:08Z</updated>
<published>2022-08-01T00:00:00Z</published>
<summary type="text">Isotope tracing in health and disease
Dong, Wentao; Rawat, Eshaan S; Stephanopoulos, Gregory; Abu-Remaileh, Monther
Biochemical characterization of metabolism provides molecular insights for understanding biology in health and disease. Over the past decades, metabolic perturbations have been implicated in cancer, neurodegeneration, and diabetes, among others. Isotope tracing is a technique that allows tracking of labeled atoms within metabolites through biochemical reactions. This technique has become an integral component of the contemporary metabolic research. Isotope tracing measures substrate contribution to downstream metabolites and indicates its utilization in cellular metabolic networks. In addition, isotopic labeling data are necessary for quantitative metabolic flux analysis. Here, we review recent work utilizing metabolic tracing to study health and disease, and highlight its application to interrogate subcellular, intercellular, and in vivo metabolism. We further discuss the current challenges and opportunities to expand the utility of isotope tracing to new research areas.
</summary>
<dc:date>2022-08-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Engineering a universal and efficient platform for terpenoid synthesis in yeast</title>
<link href="https://hdl.handle.net/1721.1/164539" rel="alternate"/>
<author>
<name>Ma, Yongshuo</name>
</author>
<author>
<name>Zu, Yuexuan</name>
</author>
<author>
<name>Huang, Sanwen</name>
</author>
<author>
<name>Stephanopoulos, Gregory</name>
</author>
<id>https://hdl.handle.net/1721.1/164539</id>
<updated>2026-04-14T03:38:15Z</updated>
<published>2022-12-28T00:00:00Z</published>
<summary type="text">Engineering a universal and efficient platform for terpenoid synthesis in yeast
Ma, Yongshuo; Zu, Yuexuan; Huang, Sanwen; Stephanopoulos, Gregory
Engineering microbes for the production of valuable natural products is often hindered by the regulation of native competing metabolic networks in host. This is particularly evident in the case of terpenoid synthesis in yeast, where the canonical terpenoid precursors are tightly coupled to the biosynthesis of sterols essential for yeast viability. One way to circumvent this limitation is by engineering product pathways less connected to the host native metabolism. Here, we introduce a two-step isopentenol utilization pathway (IUP) in&#13;
            &lt;jats:italic&gt;Saccharomyces cerevisiae&lt;/jats:italic&gt;&#13;
            to augment the native mevalonate pathway by providing a shortcut to the synthesis of the common terpenoid precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). As such, the IUP was capable of elevating the IPP/DMAPP pool by 147-fold compared with the native pathway. We further demonstrate that cofeeding isoprenol and prenol enhances geranyl diphosphate (GPP) content for monoterpene biosynthesis. More importantly, we established a synthetic three-step route for efficient synthesis of di-and tetraterpene precursor geranylgeranyl diphosphate (GGPP), circumventing the competition with farnesyl diphosphate (FPP) for sterol biosynthesis and elevating the GGPP level by 374-fold. We combine these IUP-supported precursor-forming platforms with downstream terpene synthases to harness their potential and improve the production of industrially relevant terpenoids by several fold. Our exploration provides a universal and effective platform for supporting terpenoid synthesis in yeast.
</summary>
<dc:date>2022-12-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Oscillatory control of cortical space as a computational dimension</title>
<link href="https://hdl.handle.net/1721.1/164538" rel="alternate"/>
<author>
<name>Chen, Zhen</name>
</author>
<author>
<name>Brincat, Scott L.</name>
</author>
<author>
<name>Lundqvist, Mikael</name>
</author>
<author>
<name>Loonis, Roman F.</name>
</author>
<author>
<name>Warden, Melissa R.</name>
</author>
<author>
<name>Miller, Earl K.</name>
</author>
<id>https://hdl.handle.net/1721.1/164538</id>
<updated>2026-01-16T03:07:45Z</updated>
<published>2025-12-22T00:00:00Z</published>
<summary type="text">Oscillatory control of cortical space as a computational dimension
Chen, Zhen; Brincat, Scott L.; Lundqvist, Mikael; Loonis, Roman F.; Warden, Melissa R.; Miller, Earl K.
Flexible cognition depends on the ability to represent and apply relevant information to the current task at hand. This allows the brain to interpret sensory input and guide behavior in a context-dependent manner. Recent work has proposed “spatial computing” as a mechanism for this flexibility, suggesting that task-related signals organize information processing through spatial patterns of oscillatory activity across the cortical surface. These patterns are proposed to act as “inhibitory stencils” that constrain where sensory-related information (the “content” of cognition) can be expressed in spiking activity. Here, we provide a comprehensive empirical test of spatial computing using multi-electrode recordings from the lateral prefrontal cortex in non-human primates performing a range of cognitive tasks (object working memory, sequence working memory, and categorization). We found that alpha/beta oscillations encoded task-related information, were organized into spatial patterns that changed with task conditions, and inversely correlated with the spatial expression of sensory-related spiking activity. Furthermore, we found that alpha/beta oscillations reflected misattributions of task conditions and correlated with subjects’ trial-by-trial decisions. These findings validate core predictions of spatial computing, suggesting that oscillatory dynamics not only gate information in time but also shape where in the cortex cognitive content is represented. This framework offers a unifying principle for understanding how the brain flexibly coordinates cognition through structured population dynamics.
</summary>
<dc:date>2025-12-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Working memory readout varies with frontal theta rhythms</title>
<link href="https://hdl.handle.net/1721.1/164537" rel="alternate"/>
<author>
<name>Han, Hio-Been</name>
</author>
<author>
<name>Brincat, Scott L.</name>
</author>
<author>
<name>Buschman, Timothy J.</name>
</author>
<author>
<name>Miller, Earl K.</name>
</author>
<id>https://hdl.handle.net/1721.1/164537</id>
<updated>2026-01-16T03:07:46Z</updated>
<published>2026-01-07T00:00:00Z</published>
<summary type="text">Working memory readout varies with frontal theta rhythms
Han, Hio-Been; Brincat, Scott L.; Buschman, Timothy J.; Miller, Earl K.
Increasing evidence suggests that attention varies rhythmically, phase locked to ongoing cortical oscillations. Here, we report that the phase of theta oscillations (3–6 Hz) in the frontal eye field (FEF) is associated with the spatiotemporal variation of information readout from working memory (WM). Non-human primates were briefly shown a sample array of colored squares. A short time later, they viewed a test array and were rewarded for identifying which square changed color (the target). Behavioral performance varied systematically with theta phase at the time of test array onset, as well as with the target’s location. This is consistent with theta “scanning” across the FEF and thus visual space from top to bottom. Theta was coupled, on opposing phases, to both spiking and beta (12–20 Hz). These results could be explained by a wave of activity that moves across the FEF, modulating the readout of information from WM.
</summary>
<dc:date>2026-01-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Nuclear Ship Safety Handbook</title>
<link href="https://hdl.handle.net/1721.1/163117.2" rel="alternate"/>
<author>
<name>Valiaveedu, Anthony</name>
</author>
<author>
<name>Edmonds, Nat</name>
</author>
<author>
<name>Izurieta, Jose</name>
</author>
<id>https://hdl.handle.net/1721.1/163117.2</id>
<updated>2026-01-21T15:07:41Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Nuclear Ship Safety Handbook
Valiaveedu, Anthony; Edmonds, Nat; Izurieta, Jose
At present, there exists no clear, unified public document in the incorporation of design safety for nuclear civilian ships. Historically, there has been developed research into this area due to political development in the “Atoms for Peace” era. However, as of recent, the only development has been through standards institutions related to Floating Nuclear Power Plants (commonly known as FLOPPS) and by the Russian Federation with their nuclear icebreaker development. This paper uses this research data and standards and combines it with the operational experiences during civilian maritime nuclear operations to provide unique insights into potential issues and resolutions in the design efficacy of maritime nuclear operations. The goal, therefore, is to provide a strong basis for initial safety on key areas that require nuclear and maritime regulatory research and development in the coming years to prepare for nuclear propulsion in the maritime industry. The paper is isolated into multiple chapters in the areas that involve overlapping nuclear/maritime safety design decisions that will be encountered by engineers. Chapter 1 establishes the principles andm philosophy behind the safety discussion for nuclear maritime and discusses key topics that relate to the overall ship design. Chapter 2 provides design details on the reactor compartment and other considerations when designing the reactor compartment. Chapter 3 describes the various hazards the reactor plant should be resilient against and avenues in establishing resiliency. Chapter 4 discusses the propulsion system and key considerations when evaluating different propulsion designs. Chapter 5 provides emergency power considerations for design determinations. Chapter 6 provides an event tree analysis on the major initiating events when operating a nuclear ship. Chapter 7 outlines the port operating procedures including avenues for establishing porting requirements for nuclear ships.
Contact information: Anthony Valiaveedu (arv7@mit.edu); Nat Edmonds (edmondsn@mit.edu)
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Exploring the Emotional Effects of Enhanced Interoception via Heartbeat-Synchronized Haptic Feedback</title>
<link href="https://hdl.handle.net/1721.1/164536" rel="alternate"/>
<author>
<name>Kim, Minsol</name>
</author>
<author>
<name>Whitmore, Nathan</name>
</author>
<author>
<name>Chua, Phoebe</name>
</author>
<author>
<name>Pei, Serena</name>
</author>
<author>
<name>Abdalla, Malak</name>
</author>
<author>
<name>Maes, Pattie</name>
</author>
<id>https://hdl.handle.net/1721.1/164536</id>
<updated>2026-04-14T03:37:43Z</updated>
<published>2025-12-02T00:00:00Z</published>
<summary type="text">Exploring the Emotional Effects of Enhanced Interoception via Heartbeat-Synchronized Haptic Feedback
Kim, Minsol; Whitmore, Nathan; Chua, Phoebe; Pei, Serena; Abdalla, Malak; Maes, Pattie
This study examines how amplifying real-time heartbeat feedback affects emotion regulation. Accurate heartbeat perception—a key facet of cardiac interoception—has been linked to emotional awareness and mental well-being, yet the causal role of interoceptive feedback in emotion regulation remains underexplored. We empirically tested whether making heart rate signals more perceptible through wearable haptic feedback could facilitate implicit emotion regulation during emotionally evocative experiences. Using a custom Fitbit-based system, thirty participants received real-time, sham, or no heartbeat-synchronized vibrations while viewing fear- and amusement-inducing film clips. Interoceptive accuracy, emotional disturbance, and the linguistic complexity of emotion descriptions were measured. Exploratory analyses showed that real-time feedback reduced emotional disturbance during fear stimuli, especially among individuals attentive to bodily sensations, though effects did not remain significant after multiple comparisons correction. Feedback primarily modulated arousal rather than valence and did not significantly affect heartbeat counting or linguistic complexity. As one of the first causal, empirical investigations of interoceptive feedback and emotion regulation, this work identifies boundary conditions for its effectiveness and offers insights for designing personalized, interoception-aware wearable technologies.
</summary>
<dc:date>2025-12-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>EcoLearn: Optimizing the Carbon Footprint of Federated Learning</title>
<link href="https://hdl.handle.net/1721.1/164535" rel="alternate"/>
<author>
<name>Mehboob, Talha</name>
</author>
<author>
<name>Bashir, Noman</name>
</author>
<author>
<name>Iglesias, Jesus Oma?a</name>
</author>
<author>
<name>Zink, Michael</name>
</author>
<author>
<name>Irwin, David</name>
</author>
<id>https://hdl.handle.net/1721.1/164535</id>
<updated>2026-04-14T03:37:54Z</updated>
<published>2025-12-03T00:00:00Z</published>
<summary type="text">EcoLearn: Optimizing the Carbon Footprint of Federated Learning
Mehboob, Talha; Bashir, Noman; Iglesias, Jesus Oma?a; Zink, Michael; Irwin, David
Federated Learning (FL) distributes machine learning (ML) training across edge devices to reduce data transfer overhead and protect data privacy. Since FL model training may span hundreds of devices and is thus resource- and energy-intensive, it has a significant carbon footprint. Importantly, since energy's carbon-intensity differs substantially (by up to 60×) across locations, training on the same device using the same amount of energy, but at different locations, can incur widely different carbon emissions. While prior work has focused on improving FL's resource- and energy-efficiency by optimizing time-to-accuracy, it implicitly assumes all energy has the same carbon intensity and thus does not optimize carbon efficiency, i.e., work done per unit of carbon emitted.&#13;
To address the problem, we design EcoLearn, which minimizes FL's carbon footprint without significantly affecting model accuracy or training time. EcoLearn achieves a favorable tradeoff by integrating carbon awareness into multiple aspects of FL training, including i) selecting clients with high data utility and low carbon, ii) provisioning more clients during the initial training rounds, and iii) mitigating stragglers by dynamically adjusting client over-provisioning based on carbon. We implement EcoLearn and its carbon-aware FL training policies in the Flower framework and show that it reduces the carbon footprint of training (by up to 10.8×) while maintaining model accuracy and training time (within ~1%) compared to state-of-the-art approaches.
SEC ’25, Arlington, VA, USA
</summary>
<dc:date>2025-12-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Democratizing Multi-Granularity Spatio-Temporal Intelligence with Multi-Agent Systems</title>
<link href="https://hdl.handle.net/1721.1/164534" rel="alternate"/>
<author>
<name>Wu, Che-Cheng</name>
</author>
<author>
<name>Huang, Syuan-Bo</name>
</author>
<author>
<name>Song, Yu-Lun</name>
</author>
<author>
<name>Lin, Po-Han</name>
</author>
<author>
<name>Lin, Michael</name>
</author>
<author>
<name>Lin, Yu-Ta</name>
</author>
<id>https://hdl.handle.net/1721.1/164534</id>
<updated>2026-04-14T03:37:50Z</updated>
<published>2025-11-02T00:00:00Z</published>
<summary type="text">Democratizing Multi-Granularity Spatio-Temporal Intelligence with Multi-Agent Systems
Wu, Che-Cheng; Huang, Syuan-Bo; Song, Yu-Lun; Lin, Po-Han; Lin, Michael; Lin, Yu-Ta
We propose a system that democratizes multi-granularity spatio-temporal analysis by integrating a Discrete Global Grid System (DGGS) data pipeline with a Multi-Agent System (MAS). Unlike existing single-agent spatial AI solutions that primarily target experts and lack support for heterogeneous data, persistent memory, and validation, our platform converts diverse datasets into standardized H3-indexed cells, enabling consistent analysis across scales. To enhance usability for non-experts, the system interactively guides users to refine queries, which are decomposed into sub-tasks managed by specialized agents for data retrieval, transformation, analysis, and visualization. Agents communicate through a decentralized framework with shared memory, supporting persistent reasoning and multi-turn dialogue. Reflection modules and human-in-the-loop validation further strengthen robustness. Demonstrated through real-world scenarios, such as analyzing the relationship between aging rate patterns and average income to inform social welfare policy in Taiwan, the system illustrates how natural language queries, combined with intuitive map- and chart-based visualizations, can support evidence-based decision-making.
GeoGenAgent ’25, Minneapolis, MN, USA
</summary>
<dc:date>2025-11-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>One String to Pull Them All: Fast Assembly of Curved Structures from Flat Auxetic Linkages</title>
<link href="https://hdl.handle.net/1721.1/164533" rel="alternate"/>
<author>
<name>Zaman, Akib</name>
</author>
<author>
<name>Aslarus, Jacqueline</name>
</author>
<author>
<name>Li, Jiaji</name>
</author>
<author>
<name>Mueller, Stefanie</name>
</author>
<author>
<name>Konakovic Lukovic, Mina</name>
</author>
<id>https://hdl.handle.net/1721.1/164533</id>
<updated>2026-04-14T03:37:40Z</updated>
<published>2025-12-04T00:00:00Z</published>
<summary type="text">One String to Pull Them All: Fast Assembly of Curved Structures from Flat Auxetic Linkages
Zaman, Akib; Aslarus, Jacqueline; Li, Jiaji; Mueller, Stefanie; Konakovic Lukovic, Mina
We present a computational approach for designing freeform structures that can be rapidly assembled from initially flat configurations by a single string pull. The target structures are decomposed into rigid spatially varied quad tiles that are optimized to approximate the user-provided surface, forming a flat mechanical linkage. Our algorithm then uses a two-step method to find a physically realizable string path that controls only a subset of tiles to smoothly actuate the structure from flat to assembled configuration. We initially compute the minimal subset of tiles that are required to be controlled with the string considering the geometry of the structure and interaction among the tiles. We then find a valid string path through these tiles that minimizes friction, which will assemble the flat linkage into the target 3D structure upon tightening a single string. The resulting designs can be easily manufactured with computational fabrication techniques such as 3D printing, CNC milling, molding, etc. in flat configuration that, in addition to manufacturing, facilitates storage and transportation. We validate our approach by developing a series of physical prototypes and showcasing various application case studies, ranging from medical devices, space shelters, to architectural designs.
</summary>
<dc:date>2025-12-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Discovering Folding Lines for Surface Compression</title>
<link href="https://hdl.handle.net/1721.1/164532" rel="alternate"/>
<author>
<name>Aoki, Toshiki</name>
</author>
<author>
<name>Tachi, Tomohiro</name>
</author>
<author>
<name>Konakovic Lukovic, Mina</name>
</author>
<id>https://hdl.handle.net/1721.1/164532</id>
<updated>2026-04-14T03:37:41Z</updated>
<published>2025-12-14T00:00:00Z</published>
<summary type="text">Discovering Folding Lines for Surface Compression
Aoki, Toshiki; Tachi, Tomohiro; Konakovic Lukovic, Mina
The miniaturization of shell structures presents a versatile and complex challenge, bridging geometry with diverse practical applications. In this paper, we introduce a novel approach for computing origami crease patterns to compress arbitrary 3D shell objects. First, we employ the adapted Material Point Method (MPM) to simulate the compression of a target surface and obtain an initial folded configuration. Since MPM produces overly smooth curved surfaces, their crease patterns are unsuitable for practical origami fabrication. We then propose a novel Folding Line Extraction (FLE) method that optimizes these smoothed surfaces to extract folding lines that achieve the target compression with minimal deformation and stretching outside the crease lines. This method produces smooth curved folding lines. Fabrication and experimental validation of the extracted patterns demonstrate their effectiveness and applicability in real-world scenarios.
SA Conference Papers ’25, Hong Kong, Hong Kong
</summary>
<dc:date>2025-12-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>3DPR: Single Image 3D Portrait Relighting with Generative Priors</title>
<link href="https://hdl.handle.net/1721.1/164531" rel="alternate"/>
<author>
<name>Rao, Pramod</name>
</author>
<author>
<name>Meka, Abhimitra</name>
</author>
<author>
<name>Zhou, Xilong</name>
</author>
<author>
<name>Fox, Gereon</name>
</author>
<author>
<name>B R, Mallikarjun</name>
</author>
<author>
<name>Zhan, Fangneng</name>
</author>
<author>
<name>Weyrich, Tim</name>
</author>
<author>
<name>Bickel, Bernd</name>
</author>
<author>
<name>Pfister, Hanspeter</name>
</author>
<author>
<name>Matusik, Wojciech</name>
</author>
<author>
<name>Beeler, Thabo</name>
</author>
<author>
<name>Elgharib, Mohamed</name>
</author>
<author>
<name>Habermann, Marc</name>
</author>
<author>
<name>Theobalt, Christian</name>
</author>
<id>https://hdl.handle.net/1721.1/164531</id>
<updated>2026-04-14T03:37:35Z</updated>
<published>2025-12-14T00:00:00Z</published>
<summary type="text">3DPR: Single Image 3D Portrait Relighting with Generative Priors
Rao, Pramod; Meka, Abhimitra; Zhou, Xilong; Fox, Gereon; B R, Mallikarjun; Zhan, Fangneng; Weyrich, Tim; Bickel, Bernd; Pfister, Hanspeter; Matusik, Wojciech; Beeler, Thabo; Elgharib, Mohamed; Habermann, Marc; Theobalt, Christian
Rendering novel, relit views of a human head, given a monocular portrait image as input, is an inherently underconstrained problem. The traditional graphics solution is to explicitly decompose the input image into geometry, material and lighting via differentiable rendering; but this is constrained by the multiple assumptions and approximations of the underlying models and parameterizations of these scene components. We propose 3DPR, an image-based relighting model that leverages generative priors learnt from multi-view One-Light-at-A-Time (OLAT) images captured in a light stage. We introduce a new diverse and large-scale multi-view 4K OLAT dataset of 139 subjects to learn a high-quality prior over the distribution of high-frequency face reflectance. We leverage the latent space of a pre-trained generative head model that provides a rich prior over face geometry learnt from in-the-wild image datasets. The input portrait is first embedded in the latent manifold of such a model through an encoder-based inversion process. Then a novel triplane-based reflectance network trained on our lightstage data is used to synthesize high-fidelity OLAT images to enable image-based relighting. Our reflectance network operates in the latent space of the generative head model, crucially enabling a relatively small number of lightstage images to train the reflectance model. Combining the generated OLATs according to a given HDRI environment maps yields physically accurate environmental relighting results. Through quantitative and qualitative evaluations, we demonstrate that 3DPR outperforms previous methods, particularly in preserving identity and in capturing lighting effects such as specularities, self-shadows, and subsurface scattering.
SA Conference Papers ’25, December 15–18, 2025, Hong Kong, Hong Kong
</summary>
<dc:date>2025-12-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shoot-Bounce-3D: Single-Shot Occlusion-Aware 3D from Lidar by Decomposing Two-Bounce Light</title>
<link href="https://hdl.handle.net/1721.1/164530" rel="alternate"/>
<author>
<name>Klinghoffer, Tzofi</name>
</author>
<author>
<name>Somasundaram, Siddharth</name>
</author>
<author>
<name>Xiang, Xiaoyu</name>
</author>
<author>
<name>Fan, Yuchen</name>
</author>
<author>
<name>Richardt, Christian</name>
</author>
<author>
<name>Dave, Akshat</name>
</author>
<author>
<name>Raskar, Ramesh</name>
</author>
<author>
<name>Ranjan, Rakesh</name>
</author>
<id>https://hdl.handle.net/1721.1/164530</id>
<updated>2026-04-14T03:37:53Z</updated>
<published>2025-12-14T00:00:00Z</published>
<summary type="text">Shoot-Bounce-3D: Single-Shot Occlusion-Aware 3D from Lidar by Decomposing Two-Bounce Light
Klinghoffer, Tzofi; Somasundaram, Siddharth; Xiang, Xiaoyu; Fan, Yuchen; Richardt, Christian; Dave, Akshat; Raskar, Ramesh; Ranjan, Rakesh
3D scene reconstruction from a single measurement is challenging, especially in the presence of occluded regions and specular materials, such as mirrors. We address these challenges by leveraging single-photon lidars. These lidars estimate depth from light that is emitted into the scene and reflected directly back to the sensor. However, they can also measure light that bounces multiple times in the scene before reaching the sensor. This multi-bounce light contains additional information that can be used to recover dense depth, occluded geometry, and material properties. Prior work with single-photon lidar, however, has only demonstrated these use cases when a laser sequentially illuminates one scene point at a time. We instead focus on the more practical – and challenging – scenario of illuminating multiple scene points simultaneously. The complexity of light transport due to the combined effects of multiplexed illumination, two-bounce light, shadows, and specular reflections is challenging to invert analytically. Instead, we propose a data-driven method to invert light transport in single-photon lidar. To enable this approach, we create the first large-scale simulated dataset of ~100k lidar transients for indoor scenes. We use this dataset to learn a prior on complex light transport, enabling measured two-bounce light to be decomposed into the constituent contributions from each laser spot. Finally, we experimentally demonstrate how this decomposed light can be used to infer 3D geometry in scenes with occlusions and mirrors from a single measurement. Our code and dataset are released on our project webpage.
SA Conference Papers ’25, Hong Kong, Hong Kong
</summary>
<dc:date>2025-12-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>PhysiOpt: Physics-Driven Shape Optimization for 3D Generative Models</title>
<link href="https://hdl.handle.net/1721.1/164529" rel="alternate"/>
<author>
<name>Zhan, Xiao</name>
</author>
<author>
<name>Jambon, Cl?ment</name>
</author>
<author>
<name>Thompson, Evan</name>
</author>
<author>
<name>Ng, Kenney</name>
</author>
<author>
<name>Konakovi? Lukovi?, Mina</name>
</author>
<id>https://hdl.handle.net/1721.1/164529</id>
<updated>2026-04-14T03:37:50Z</updated>
<published>2025-12-14T00:00:00Z</published>
<summary type="text">PhysiOpt: Physics-Driven Shape Optimization for 3D Generative Models
Zhan, Xiao; Jambon, Cl?ment; Thompson, Evan; Ng, Kenney; Konakovi? Lukovi?, Mina
Generative models have recently demonstrated impressive capabilities in producing high-quality 3D shapes from a variety of user inputs (e.g., text or images). However, generated objects often lack physical integrity. We introduce PhysiOpt, a differentiable physics optimizer designed to improve the physical behavior of 3D generative outputs, enabling them to transition from virtual designs to physically plausible, real-world objects. While most generative models represent geometry as continuous implicit fields, physics-based approaches often rely on the finite element method (FEM), requiring ad hoc mesh extraction to perform shape optimization. In addition, these methods are typically slow, limiting their integration in fast, iterative generative design workflows. Instead, we bridge the representation gap and propose a fast and effective differentiable simulation pipeline that optimizes shapes directly in the latent space of generative models using an intuitive and easy-to-implement differentiable mapping. This approach enables fast optimization while preserving semantic structure, unlike traditional methods relying on local mesh-based adjustments. We demonstrate the versatility of our optimizer across a range of shape priors, from global and part-based latent models to a state-of-the-art large-scale 3D generator, and compare it to a traditional mesh-based shape optimizer. Our method preserves the native representation and capabilities of the underlying generative model while supporting user-specified materials, loads, and boundary conditions. The resulting designs exhibit improved physical behavior, remain faithful to the learned priors, and are suitable for fabrication. We demonstrate the effectiveness of our approach on both virtual and fabricated objects.
SA Conference Papers ’25, Hong Kong, Hong Kong
</summary>
<dc:date>2025-12-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Low-Rank Adaptation of Neural Fields</title>
<link href="https://hdl.handle.net/1721.1/164528" rel="alternate"/>
<author>
<name>Truong, Anh</name>
</author>
<author>
<name>Mahmoud, Ahmed</name>
</author>
<author>
<name>Konakovi? Lukovi?, Mina</name>
</author>
<author>
<name>Solomon, Justin</name>
</author>
<id>https://hdl.handle.net/1721.1/164528</id>
<updated>2026-04-14T03:38:05Z</updated>
<published>2025-12-14T00:00:00Z</published>
<summary type="text">Low-Rank Adaptation of Neural Fields
Truong, Anh; Mahmoud, Ahmed; Konakovi? Lukovi?, Mina; Solomon, Justin
Processing visual data often involves small adjustments or sequences of changes, e.g., image filtering, surface smoothing, and animation. While established graphics techniques like normal mapping and video compression exploit redundancy to encode such small changes efficiently, the problem of encoding small changes to neural fields—neural network parameterizations of visual or physical functions—has received less attention. We propose a parameter-efficient strategy for updating neural fields using low-rank adaptations (LoRA). LoRA, a method from the parameter-efficient fine-tuning LLM community, encodes small updates to pre-trained models with minimal computational overhead. We adapt LoRA for instance-specific neural fields, avoiding the need for large pre-trained models and yielding lightweight updates. We validate our approach with experiments in image filtering, geometry editing, video compression, and energy-based editing, demonstrating its effectiveness and versatility for representing neural field updates.
Anh Truong, Ahmed H. Mahmoud, Mina Konaković Luković, and Justin Solomon. 2025. Low-Rank Adaptation of Neural Fields. In Proceedings of the SIGGRAPH Asia 2025 Conference Papers (SA Conference Papers '25). Association for Computing Machinery, New York, NY, USA, Article 86, 1–12.
</summary>
<dc:date>2025-12-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Participatory Evolution of Artificial Life Systems via Semantic Feedback</title>
<link href="https://hdl.handle.net/1721.1/164527" rel="alternate"/>
<author>
<name>Li, Shuowen</name>
</author>
<author>
<name>Wang, Kexin</name>
</author>
<author>
<name>Fang, Minglu</name>
</author>
<author>
<name>Huang, Danqi</name>
</author>
<author>
<name>Asadipour, Ali</name>
</author>
<author>
<name>Mi, Haipeng</name>
</author>
<author>
<name>Sun, Yitong</name>
</author>
<id>https://hdl.handle.net/1721.1/164527</id>
<updated>2026-04-14T03:38:22Z</updated>
<published>2025-12-14T00:00:00Z</published>
<summary type="text">Participatory Evolution of Artificial Life Systems via Semantic Feedback
Li, Shuowen; Wang, Kexin; Fang, Minglu; Huang, Danqi; Asadipour, Ali; Mi, Haipeng; Sun, Yitong
We present a semantic-feedback framework that treats natural language as a regulatory signal for evolving artificial-life systems. Instead of using prompts to select finished images, text in our system shapes the dynamics of an interactive ecosystem, allowing audiences to cultivate behaviors over time. The framework couples a learned mapping from prompts to simulation parameters with evolutionary search and vision–language evaluation, so user intent modulates both visible outcomes and the underlying generative rules. It supports iterative prompt refinement, multi-agent interaction, and the synthesis of new collective rules from community input. In a user study, participants achieved higher semantic alignment and reported a greater sense of control than with manual tuning, while behaviors remained diverse across generations. As an art-led contribution, the work reframes authoring as participatory cultivation and advances open-ended evolution as a socially distributed, not solely algorithmic, process; as a tool contribution, it offers a practical platform for co-creative generative design.
SA Art Papers ’25, Hong Kong, Hong Kong
</summary>
<dc:date>2025-12-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Physical Manifestation of Generative AI Music Systems for Live Performance</title>
<link href="https://hdl.handle.net/1721.1/164526" rel="alternate"/>
<author>
<name>Naseck, Perry</name>
</author>
<author>
<name>Blanchard, Lancelot</name>
</author>
<author>
<name>Lavakare, Madhav</name>
</author>
<author>
<name>Lecamwasam, Kimaya</name>
</author>
<author>
<name>Paradiso, Joseph</name>
</author>
<id>https://hdl.handle.net/1721.1/164526</id>
<updated>2026-04-14T03:38:19Z</updated>
<published>2025-12-14T00:00:00Z</published>
<summary type="text">Physical Manifestation of Generative AI Music Systems for Live Performance
Naseck, Perry; Blanchard, Lancelot; Lavakare, Madhav; Lecamwasam, Kimaya; Paradiso, Joseph
This paper explores the physical manifestation of generative AI music systems for live performance, focusing on bridging the expressive gap between AI-generated music and audience perception. Through a year-long collaboration with a human performer, we constructed a kinetic sculpture that visualizes the outputs of an AI jam_bot during concerts. The sculpture, powered by ML-based and pattern-driven mapping methodologies, interprets real-time AI musical decisions as expressive movements. Audience feedback indicates increased engagement and curiosity, although interpretability remains a challenge. Our work highlights the potential of embodied visualization to establish communicative presence for AI performers and suggests avenues for future research.
SA Art Papers ’25, Hong Kong, Hong Kong
</summary>
<dc:date>2025-12-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Performant Unified GPU Kernels for Portable Singular Value Computation Across Hardware and Precision</title>
<link href="https://hdl.handle.net/1721.1/164525" rel="alternate"/>
<author>
<name>Ringoot, Evelyne</name>
</author>
<author>
<name>Alomairy, Rabab</name>
</author>
<author>
<name>Churavy, Valentin</name>
</author>
<author>
<name>Edelman, Alan</name>
</author>
<id>https://hdl.handle.net/1721.1/164525</id>
<updated>2026-04-14T03:38:16Z</updated>
<published>2025-12-20T00:00:00Z</published>
<summary type="text">Performant Unified GPU Kernels for Portable Singular Value Computation Across Hardware and Precision
Ringoot, Evelyne; Alomairy, Rabab; Churavy, Valentin; Edelman, Alan
This paper presents a portable, GPU-accelerated implementation of a QR-based singular value computation algorithm in Julia. The singular value decomposition (SVD) is a fundamental numerical tool in scientific computing and machine learning, providing optimal low-rank matrix approximations. Its importance has increased even more in large-scale machine learning pipelines, including large language models (LLMs), where it enables low-rank adaptation (LoRA). The implemented algorithm is based on the classic two-stage QR reduction, consisting of successive matrix reduction to band form and bidiagonal form. Our implementation leverages Julia’s multiple dispatch and metaprogramming capabilities, integrating with the GPUArrays and KernelAbstractions frameworks to provide a unified type and hardware-agnostic function. It supports diverse GPU architectures and data types, and is, to our knowledge, the first GPU-accelerated singular value implementation to support Apple Metal GPUs and half precision. Performance results on multiple GPU backends and data types demonstrate that portability does not require sacrificing performance: the unified function outperforms most linear algebra libraries (MAGMA, SLATE, rocSOLVER, oneMKL) for matrix sizes larger than 1024 × 1024, and achieves 80%-90% of the performance of cuSOLVER for large matrices.
ICPP ’25, San Diego, CA, USA
</summary>
<dc:date>2025-12-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>UQGNN: Uncertainty Quantification of Graph Neural Networks for Multivariate Spatiotemporal Prediction</title>
<link href="https://hdl.handle.net/1721.1/164524" rel="alternate"/>
<author>
<name>Yu, Dahai</name>
</author>
<author>
<name>Zhuang, Dingyi</name>
</author>
<author>
<name>Jiang, Lin</name>
</author>
<author>
<name>Xu, Rongchao</name>
</author>
<author>
<name>Ye, Xinyue</name>
</author>
<author>
<name>Bu, Yuheng</name>
</author>
<author>
<name>Wang, Shenhao</name>
</author>
<author>
<name>Wang, Guang</name>
</author>
<id>https://hdl.handle.net/1721.1/164524</id>
<updated>2026-04-14T03:38:10Z</updated>
<published>2025-12-12T00:00:00Z</published>
<summary type="text">UQGNN: Uncertainty Quantification of Graph Neural Networks for Multivariate Spatiotemporal Prediction
Yu, Dahai; Zhuang, Dingyi; Jiang, Lin; Xu, Rongchao; Ye, Xinyue; Bu, Yuheng; Wang, Shenhao; Wang, Guang
Spatiotemporal prediction plays a critical role in numerous real-world applications such as urban planning, transportation optimization, disaster response, and pandemic control. In recent years, researchers have made significant progress by developing advanced deep learning models for spatiotemporal prediction. However, most existing models are deterministic, i.e., predicting only the expected mean values without quantifying uncertainty, leading to potentially unreliable and inaccurate outcomes. While recent studies have introduced probabilistic models to quantify uncertainty, they typically focus on a single phenomenon (e.g., taxi, bike, crime, or traffic crashes), thereby neglecting the inherent correlations among heterogeneous urban phenomena. To address the research gap, we propose a novel Graph Neural Network with Uncertainty Quantification, termed UQGNN for multivariate spatiotemporal prediction. UQGNN introduces two key innovations: (i) an Interaction-aware Spatiotemporal Embedding Module that integrates a multivariate diffusion graph convolutional network and an interaction-aware temporal convolutional network to effectively capture complex spatial and temporal interaction patterns, and (ii) a multivariate probabilistic prediction module designed to estimate both expected mean values and associated uncertainties. Extensive experiments on four real-world multivariate spatiotemporal datasets from Shenzhen, New York City, and Chicago demonstrate that UQGNN consistently outperforms state-of-the-art baselines in both prediction accuracy and uncertainty quantification. For example, on the Shenzhen dataset, UQGNN achieves a 5% improvement in both prediction accuracy and uncertainty quantification.
SIGSPATIAL ’25, Minneapolis, MN, USA
</summary>
<dc:date>2025-12-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>SONAR Web: A Platform-Agnostic Framework for Real-Time Decentralized Learning Across Heterogeneous Edge Clients</title>
<link href="https://hdl.handle.net/1721.1/164523" rel="alternate"/>
<author>
<name>Yuan, Joyce</name>
</author>
<author>
<name>Le, Brian</name>
</author>
<author>
<name>Le, Kathryn</name>
</author>
<author>
<name>Shi, Yichuan</name>
</author>
<author>
<name>Singh, Abhishek</name>
</author>
<author>
<name>Sharma, Rishi</name>
</author>
<author>
<name>Patricio, Angel</name>
</author>
<author>
<name>Raskar, Ramesh</name>
</author>
<id>https://hdl.handle.net/1721.1/164523</id>
<updated>2026-04-14T03:38:26Z</updated>
<published>2025-12-02T00:00:00Z</published>
<summary type="text">SONAR Web: A Platform-Agnostic Framework for Real-Time Decentralized Learning Across Heterogeneous Edge Clients
Yuan, Joyce; Le, Brian; Le, Kathryn; Shi, Yichuan; Singh, Abhishek; Sharma, Rishi; Patricio, Angel; Raskar, Ramesh
Most federated learning (FL) frameworks assume reliable networks and homogeneous devices, limiting their applicability in mobile and edge environments where connectivity is intermittent and devices are highly heterogeneous. We introduce SONAR Web, an open-source framework for fully decentralized, cross-platform collaborative learning between browsers, servers, tablets, and smartphones. SONAR Web decouples the learning protocol from the underlying client platform through a platform-agnostic configuration interface—enabling Python, JavaScript, and mobile clients to seamlessly interoperate in real time. By combining peer-to-peer RTC protocols with communication-efficient techniques from FL, SONAR Web supports privacy-preserving training without centralized orchestration. We demonstrate SONAR Web's robustness through deployments on real-world devices and networks, showing resilience under heterogeneous network conditions and resource variability. SONAR Web provides a unified, language-agnostic interface for decentralized learning, enabling seamless collaboration across heterogeneous devices and runtimes—advancing scalable, inclusive, and real-time model training at the mobile and edge frontier.
FLEdge-AI ’25, November 4-8, 2025, Hong Kong, China
</summary>
<dc:date>2025-12-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ferrozuit: Ferromagnetic Electronic Textile System for Zero-Gravity Spatial Anchoring</title>
<link href="https://hdl.handle.net/1721.1/164522" rel="alternate"/>
<author>
<name>Honnet, Cedric</name>
</author>
<author>
<name>Freire, Rachel</name>
</author>
<author>
<name>Cherston, Juliana</name>
</author>
<author>
<name>Guenther, Maximilian</name>
</author>
<author>
<name>Paradiso, Joseph</name>
</author>
<author>
<name>Wicaksono, Irmandy</name>
</author>
<id>https://hdl.handle.net/1721.1/164522</id>
<updated>2026-04-14T03:38:25Z</updated>
<published>2025-12-29T00:00:00Z</published>
<summary type="text">Ferrozuit: Ferromagnetic Electronic Textile System for Zero-Gravity Spatial Anchoring
Honnet, Cedric; Freire, Rachel; Cherston, Juliana; Guenther, Maximilian; Paradiso, Joseph; Wicaksono, Irmandy
Long-duration human space missions introduce persistent physical, physiological, and psychological challenges stemming from the absence of gravity. Beyond major concerns like bone deterioration, cardiovascular deconditioning, and muscle atrophy, astronauts frequently experience spatial disorientation, discomfort during routine tasks, and difficulty maintaining stable body positioning. These subtle yet pervasive issues impact daily functioning, underscoring the need for lightweight, unobtrusive solutions that support orientation, comfort, and stability in microgravity environments. Ferrozuit introduces a solution to address these challenges in microgravity. It is a prototype crafted from custom ferromagnetic thread, woven and tailored to interact with programmable (electro)permanent magnets embedded within the microgravity environment. This system aims to provide an anchoring force intended to improve stability during tasks, enhance comfort during rest, and create a sense of orientation. This paper details the design rationale, the fabrication of the ferromagnetic textile, the magnetic docking system, initial technical evaluations, and potential applications. Ferrozuit reimagines spatial anchoring as an embedded, textile-driven experience, blending textile craft with advanced materials for adaptive wearable anchoring in microgravity environments.
UbiComp Companion ’25, Espoo, Finland
</summary>
<dc:date>2025-12-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Intelligent Soft Wearables</title>
<link href="https://hdl.handle.net/1721.1/164521" rel="alternate"/>
<author>
<name>Yu, Tianhong</name>
</author>
<author>
<name>Honnet, Cedric</name>
</author>
<author>
<name>Cheng, Tingyu</name>
</author>
<author>
<name>Takahashi, Ryo</name>
</author>
<author>
<name>Zhou, Bo</name>
</author>
<author>
<name>Zhang, Cheng</name>
</author>
<author>
<name>Lukowicz, Paul</name>
</author>
<author>
<name>Kawahara, Yoshihiro</name>
</author>
<author>
<name>Hester, Josiah</name>
</author>
<author>
<name>Paradiso, Joseph</name>
</author>
<author>
<name>Luo, Yiyue</name>
</author>
<author>
<name>Wicaksono, Irmandy</name>
</author>
<id>https://hdl.handle.net/1721.1/164521</id>
<updated>2026-04-14T03:38:23Z</updated>
<published>2025-12-29T00:00:00Z</published>
<summary type="text">Intelligent Soft Wearables
Yu, Tianhong; Honnet, Cedric; Cheng, Tingyu; Takahashi, Ryo; Zhou, Bo; Zhang, Cheng; Lukowicz, Paul; Kawahara, Yoshihiro; Hester, Josiah; Paradiso, Joseph; Luo, Yiyue; Wicaksono, Irmandy
Human bodies are almost always in contact with soft materials like clothing, for warmth, protection, self-expression, etc. Recent advancements in intelligent soft wearables have augmented these on-body soft objects with computational functions and intelligence with little compromise on the softness and comforts of wearables, allowing prolonged wear. These innovations, which combine advanced soft sensor design, fabrication, and computational power, offer unprecedented opportunities to improve our health, productivity, and overall well-being with monitoring and assistive capabilities. However, the inherent physical properties of soft materials present unique challenges in achieving practical interactions. The complexity of intelligent soft wearables, multiplexing intricate designs, soft materials, flexible electronics, advanced signal processing algorithms, and machine learning models, necessitates collaborative efforts from experts across diverse domains. This workshop aims to bring together interested researchers and practitioners across relevant domains to discuss the challenges and opportunities of intelligent soft wearables.
</summary>
<dc:date>2025-12-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantum dots: A journey from fundamental discovery to technological impacts</title>
<link href="https://hdl.handle.net/1721.1/164520" rel="alternate"/>
<author>
<name>Hassan, Abeera</name>
</author>
<author>
<name>Kaur, Jaspreet</name>
</author>
<author>
<name>Chen, Ou</name>
</author>
<author>
<name>Bawendi, Moungi G.</name>
</author>
<id>https://hdl.handle.net/1721.1/164520</id>
<updated>2026-01-13T04:55:00Z</updated>
<published>2025-11-13T00:00:00Z</published>
<summary type="text">Quantum dots: A journey from fundamental discovery to technological impacts
Hassan, Abeera; Kaur, Jaspreet; Chen, Ou; Bawendi, Moungi G.
This article traces the evolution of quantum dots (QDs) from their initial discovery to growing technological impacts. We highlight the key breakthroughs in the development of colloidal QDs that have enabled precise control over their unique optical and optoelectronic properties. We also discuss a range of QD-based applications and address commercialization efforts. Finally, we examine ongoing challenges and emerging opportunities that are set to shape the future of QD research and technological advancement.
</summary>
<dc:date>2025-11-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Proximity-labeling proteomics reveals remodeled interactomes and altered localization of pathogenic SHP2 variants</title>
<link href="https://hdl.handle.net/1721.1/164519" rel="alternate"/>
<author>
<name>van Vlimmeren, Anne E.</name>
</author>
<author>
<name>Tang, Lauren C.</name>
</author>
<author>
<name>Jiang, Ziyuan</name>
</author>
<author>
<name>Iyer, Abhishek</name>
</author>
<author>
<name>Voleti, Rashmi</name>
</author>
<author>
<name>Krismer, Konstantin</name>
</author>
<author>
<name>Gaublomme, Jellert T.</name>
</author>
<author>
<name>Jovanovic, Marko</name>
</author>
<author>
<name>Shah, Neel H.</name>
</author>
<id>https://hdl.handle.net/1721.1/164519</id>
<updated>2026-04-14T03:38:13Z</updated>
<published>2025-12-22T00:00:00Z</published>
<summary type="text">Proximity-labeling proteomics reveals remodeled interactomes and altered localization of pathogenic SHP2 variants
van Vlimmeren, Anne E.; Tang, Lauren C.; Jiang, Ziyuan; Iyer, Abhishek; Voleti, Rashmi; Krismer, Konstantin; Gaublomme, Jellert T.; Jovanovic, Marko; Shah, Neel H.
Missense mutations in PTPN11, which encodes the protein tyrosine phosphatase SHP2, are common in several developmental disorders and cancers. While many mutations disrupt auto-inhibition and hyperactivate SHP2, several do not enhance catalytic activity. Both activating and non-activating mutations could potentially drive pathogenic signaling by altering SHP2 interactions or localization. We employed proximity-labeling proteomics to map the interaction networks of wild-type SHP2, ten clinically relevant mutants, and SHP2 bound to an inhibitor that stabilizes its auto-inhibited state. Our analyses reveal mutation- and inhibitor-dependent alterations in the SHP2 interactome, with several mutations also changing localization. Some mutants show increased mitochondrial localization and impact mitochondrial function. This study provides a resource for exploring SHP2 signaling and offers new insights into the molecular basis of SHP2-driven diseases. Furthermore, this work highlights the capacity for proximity-labeling proteomics to detect missense-mutation-dependent changes in protein interactions and localization.
</summary>
<dc:date>2025-12-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Perspective on patient and non-academic partner engagement for the responsible integration of large language models in health chatbots</title>
<link href="https://hdl.handle.net/1721.1/164518" rel="alternate"/>
<author>
<name>Jaiswal, Nikhil</name>
</author>
<author>
<name>Ma, Yuanchao</name>
</author>
<author>
<name>Lebouché, Bertrand</name>
</author>
<author>
<name>Poenaru, Dan</name>
</author>
<author>
<name>Pomey, Marie-Pascale</name>
</author>
<author>
<name>Achiche, Sofiane</name>
</author>
<author>
<name>Lessard, David</name>
</author>
<author>
<name>Engler, Kim</name>
</author>
<author>
<name>Montiel, Zully</name>
</author>
<author>
<name>Acevedo, Hector</name>
</author>
<author>
<name>Gameiro, Rodrigo R.</name>
</author>
<author>
<name>Celi, Leo A.</name>
</author>
<author>
<name>Osmanlliu, Esli</name>
</author>
<id>https://hdl.handle.net/1721.1/164518</id>
<updated>2026-04-14T03:38:11Z</updated>
<published>2025-12-22T00:00:00Z</published>
<summary type="text">Perspective on patient and non-academic partner engagement for the responsible integration of large language models in health chatbots
Jaiswal, Nikhil; Ma, Yuanchao; Lebouché, Bertrand; Poenaru, Dan; Pomey, Marie-Pascale; Achiche, Sofiane; Lessard, David; Engler, Kim; Montiel, Zully; Acevedo, Hector; Gameiro, Rodrigo R.; Celi, Leo A.; Osmanlliu, Esli
Uses of large language models (LLMs) in health chatbots are expanding into high-stakes clinical contexts, heightening the need for tools that are evidence-based, accountable, accurate, and patient-centred. This conceptual, practice-informed Perspective reflects on engaging patients and non-academic partners for the responsible integration of LLMs, grounded in the co-construction of MARVIN (for people living with HIV) and in an emerging collaboration with MIT Critical Data. Organised by the Software Development Life Cycle, we describe: conception/needs assessment with patient partners to identify use cases, acceptable trade-offs, and privacy expectations; development that prioritises grounding via vetted sources, structured human feedback, and data-validation committees including patient partners; testing and evaluation using patient-reported outcome measures (PROMs) and patient-reported experience measures (PREMs) chosen in collaboration with patients to capture usability, acceptability, trust, and perceived safety, alongside task performance and harmful-output monitoring; and implementation via diverse governance boards, knowledge-mobilisation materials to set expectations, and risk-management pathways for potentially unsafe outputs. Based on our experience with MARVIN, we recommend early and continuous engagement of patients and non-academic partners, fair compensation, shared decision-making power, transparent decision logging, and inclusive, adaptable governance that can evolve with changing models and standards. These lessons highlight how patient partnership can directly shape chatbot design and oversight, helping teams align LLM-enabled tools with patient-centred goals while building accountable, safe, and equitable systems.
</summary>
<dc:date>2025-12-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Study of charm mixing and CP violation with D0 → K±π∓π±π∓ decays</title>
<link href="https://hdl.handle.net/1721.1/164517" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164517</id>
<updated>2026-04-14T03:38:09Z</updated>
<published>2025-12-19T00:00:00Z</published>
<summary type="text">Study of charm mixing and CP violation with D0 → K±π∓π±π∓ decays
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.
A study of charm mixing and CP violation in D0 → K±π∓π±π∓ decays is performed using data collected by the LHCb experiment in proton-proton collisions from 2015 to 2018, corresponding to an integrated luminosity of 6 fb−1. The ratio of promptly produced D0 → K+π−π+π− to D0 → K−π+π−π+ decay rates is measured as a function of D0 decay time, both inclusive over phase space and in bins of phase space. Taking external inputs for the D 0 − D ¯ 0 mixing parameters x and y allows constraints to be obtained on the hadronic parameters of the charm decay. When combined with previous measurements from charm-threshold experiments and at LHCb, improved knowledge is obtained for these parameters, which is valuable for studies of the angle γ of the Unitarity Triangle. An alternative analysis is also performed, in which external inputs are taken for the hadronic parameters, and the mixing parameters are determined, including ∆x and ∆y, which are nonzero in the presence of CP violation. It is found that x = 0 . 85 − 0.24 + 0.15 % , y = 0 . 21 − 0.27 + 0.29 % , ∆x = (−0.02 ± 0.04) % and Δ y = 0.0 2 − 0.03 + 0.04 % . These results are consistent with previous measurements and the hypothesis of CP conservation.
</summary>
<dc:date>2025-12-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Energy-energy correlator at hadron colliders: celestial blocks and singularities</title>
<link href="https://hdl.handle.net/1721.1/164516" rel="alternate"/>
<author>
<name>Chen, Hao</name>
</author>
<author>
<name>Ruan, Hongyi</name>
</author>
<author>
<name>Zhu, Hua X.</name>
</author>
<id>https://hdl.handle.net/1721.1/164516</id>
<updated>2026-04-14T03:37:51Z</updated>
<published>2025-12-22T00:00:00Z</published>
<summary type="text">Energy-energy correlator at hadron colliders: celestial blocks and singularities
Chen, Hao; Ruan, Hongyi; Zhu, Hua X.
Energy-energy correlator (EEC) is an event shape observable that characterizes the distribution of energy flux in collision events. We initiate the study of full-range EEC at hadron colliders, generalizing the extensively studied EEC in e+e− collision as well as the transverse EEC in hadron collisions. We derive celestial blocks from Lorentz symmetry to perform partial wave decomposition of the EEC at hadron colliders. These celestial blocks are essentially conformal blocks on the 2d celestial sphere, which have additional dependence on the collinear spin of “light-ray transition matrix” along the collision axis. In this work, we perform the leading-order (LO) analytic calculation of this observable in pure Yang-Mills theory and use it as an example to illustrate the block decomposition. Numerically, the block expansion demonstrates superior accuracy in the collinear limit compared to conventional power series expansion. Analytically, we observe in this example that the block coefficients exhibit analyticity in both collinear and transverse spin. In addition, we analyze several kinematic limits at LO — collinear, back-to-back, opposite coplanar and Regge limit. While the first three limits naturally generalize their e+e− collision counterparts or transverse EEC and are governed by soft-collinear dynamics, the Regge limit requires complete angular dependence and reveals BFKL physics. Phenomenologically, we propose a realistic experimental setup and briefly discuss how the convolution of parton distribution function modifies the perturbative EEC result. Our work suggests that the full-range EEC at hadron colliders is an elegant observable which probes a broader kinematic space and connects various regimes of different QCD dynamics through a single measurement.
</summary>
<dc:date>2025-12-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Synthesis and Applications of Large-Area Monolayer Graphene</title>
<link href="https://hdl.handle.net/1721.1/164515" rel="alternate"/>
<author>
<name>Wang, Zhien (Abigail)</name>
</author>
<id>https://hdl.handle.net/1721.1/164515</id>
<updated>2026-01-13T03:36:27Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Synthesis and Applications of Large-Area Monolayer Graphene
Wang, Zhien (Abigail)
Graphene, renowned for its exceptional electrical, mechanical, and chemical properties, is a promising candidate for next-generation electronics, photonics, and biosensing. However, realizing its full potential depends critically on the ability to synthesize high-quality monolayer graphene. In this thesis, we present a robust chemical vapor deposition (CVD) approach for synthesizing large-area, adlayer-free, single-orientation graphene on Cu(111) foil and Cu(111) film/sapphire. A comparative analysis between these two substrates reveals critical differences in wrinkle density, grain size, and strain — offering insights for optimizing graphene growth.&#13;
We further identify and characterize defective merging behavior in single-orientation graphene domains. Contrary to conventional assumptions, these merging regions contain permeable defects, revealing previously unrecognized limitations in using single-orientation stitched graphene as an impermeable barrier. To scale up production while reducing human error, we also develop an autonomous CVD platform with automated sample handling, growth and post-growth oxidation. This system enables high-throughput and reproducible graphene synthesis with minimal supervision.&#13;
Building on these synthesis advances, we explore multiple applications of large-area monolayer graphene. We discover that graphene can promote interfacial oxidation of metals like aluminum and titanium during deposition, whereas metals such as nickel remain stable — a finding that informs the engineering of metal-graphene interfaces for electronic devices. In parallel, we explored diverse applications of graphene, including its role as a transparent, flexible electrode in organic solar cells, along with several collaborative efforts demonstrating its use as a sensor for cardiac microtissues, and as a tunable microheater in mid-infrared devices.&#13;
Altogether, this work advances both the fundamental understanding and technological scalability of monolayer graphene, positioning it as a versatile platform for future applications across electronics, optoelectronics, and biointerfaces.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mapping signaling networks and rapidly evolving genes in the developing Arabidopsis seed at single-nucleus resolution</title>
<link href="https://hdl.handle.net/1721.1/164514" rel="alternate"/>
<author>
<name>Martin, Caroline A.</name>
</author>
<id>https://hdl.handle.net/1721.1/164514</id>
<updated>2026-01-13T03:36:58Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Mapping signaling networks and rapidly evolving genes in the developing Arabidopsis seed at single-nucleus resolution
Martin, Caroline A.
Seeds are an exceptional evolutionary innovation that enables the conditional allocation of maternal resources to successfully fertilized ovules. During early development, seeds accumulate nutrients that are utilized either by the embryo or by humans who harvest seed crops for food, biofuel, and livestock feed. Moreover, the grains of maize, rice, and wheat provide approximately 60% of the calories consumed worldwide. Although seeds are a cornerstone for ecosystems and modern agriculture, fundamental aspects of their development are incompletely understood. In this thesis, I develop a transcriptional atlas of seed development using the model plant Arabidopsis thaliana to clarify the functional compartmentalization, diversity, and developmental dynamics of cell types in the seed. I focus my analyses on how seed cell types communicate with one another to ensure successful propagation, and how genetic conflicts in the seed may drive rapid evolution in specific cell types. After characterizing the extent of short, secreted peptide expression in specific seed cell types, I perform in silico screens to match potential peptide hormones with their receptors. In total, I show that the seed coat shows functional compartmentalization around the gateway for maternal resources into seeds, that seed genes differentially expressed in a maternal resource transfer structure are rapidly evolving, and that genes underlying brassinosteroid biosynthesis and response are expressed in adjacent tissues, among other findings. This thesis illuminates potentially new mechanisms for inter-tissue coordination and provides a transcriptional reference for future seed studies.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimization in Deep Learning: Structured, Realistic and Interpretable Learning for Decision-Making</title>
<link href="https://hdl.handle.net/1721.1/164513" rel="alternate"/>
<author>
<name>Tsiourvas, Asterios</name>
</author>
<id>https://hdl.handle.net/1721.1/164513</id>
<updated>2026-01-13T03:36:43Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Optimization in Deep Learning: Structured, Realistic and Interpretable Learning for Decision-Making
Tsiourvas, Asterios
In recent years, deep learning has emerged as a powerful tool for data-driven decisionmaking. However, its adoption in high-stakes applications is often constrained by challenges related to interpretability, fairness, and generalization in structured or complex environments. This thesis develops new optimization methodologies to enhance the realism, structureawareness, and interpretability of deep learning models in decision-making tasks. We begin, in Chapter 2, by addressing the challenge of optimizing trained neural networks for data-driven decision-making. Although neural networks can encode rich representations of preferences or outcomes, directly optimizing their outputs can be computationally intractable and often may produce unrealistic prescriptions. We introduce scalable algorithms that leverage the piecewise-linear structure of ReLU networks, reducing the original hard-to-solve mixed-integer program into tractable linear programs. To ensure realism, we introduce constraints that restrict decisions to lie on the data manifold. We then extend this framework to any differentiable neural network or MIP-expressible model and show that it scales for networks with millions of parameters. In Chapter 3, we focus on decision-making under observational data. First, we study personalized treatment recommendations under discrete treatments. We introduce the Prescriptive ReLU (P-ReLU) network, a piecewise-linear model that partitions the input space into polyhedral regions, assigning treatments uniformly within each, and that can be translated into an equivalent interpretable decision tree. We demonstrate that P-ReLU achieves strong prescriptive accuracy and accommodates structural/prescriptive constraints with ease. Next, we consider the problem of large language model (LLM) routing, where a query must be dynamically routed to the best model under competing metrics like accuracy and cost. We develop a causal, end-to-end approach that learns routing policies directly from logged observational data, minimizing directly decision-making regret. Finally, we tackle the problem of generating realistic, manifold-aligned counterfactual explanations. To address this problem, we present a MIP formulation where we explicitly enforce manifold alignment by reformulating the highly nonlinear Local Outlier Factor (LOF) metric as a set of mixed-integer constraints. To address the computational challenge, we leverage the geometry of the network and propose an efficient decomposition scheme that reduces the initial hard-to-solve problem into a series of significantly smaller, easier-to-solve problems. We further extend this framework to any differentiable neural network or MIP-expressible machine learning model. In Chapter 4, we focus on structured machine learning. We first address the problem of hierarchical time series forecasting, where predictions must be both accurate and consistent with the aggregation structure of the hierarchy. While prior methods rely on fixed projection matrices, we propose learning the optimal oblique projection directly from data. The proposed end-to-end approach jointly trains the forecasting model and projection layer, significantly improving accuracy and coherence. Next, we study the problem of creating a highly expressive, interpretable, and fair machine learning model. We propose Neural-Informed Decision Trees (NIDTs), a model that combines the predictive power of neural networks with the inherent interpretability of decision trees. NIDTs use axis-aligned splits on dataset features to form transparent decision paths, and at each leaf, apply a linear predictor based on both the original features and neural embeddings from a task-specific network to capture non-linearities. To generate NIDTs, we develop a decomposition training scheme that supports direct integration of fairness constraints via a constrained convex optimization problem solved at each leaf. Finally, in Chapter 5, we address fairness and efficiency in emergency department (ED) operations, where prolonged length of stay (LOS) has been linked to adverse outcomes such as increased mortality and higher risk of hospital-acquired infections. We focus on the patient prioritization and placement aspects of ED operations to improve throughput and reduce wait times. We propose a novel MIP predictive-prescriptive framework that decomposes predicted LOS into actionable components, enabling a more granular and operationally meaningful model of ED dynamics. Fairness considerations are explicitly incorporated into the formulation. To address uncertainty, we introduce a sampling-based solution approach. Our method increases ED throughput by 50–100% and reduces average wait time by 50–75%, depending on current utilization levels, while achieving near-optimal performance compared to a clairvoyant oracle. This work was conducted in collaboration with a major U.S. academic medical center. To facilitate practical implementation, we also design an interpretable metamodel that approximates the predictive-prescriptive algorithm with high fidelity. Together, these contributions provide a unified perspective on deep learning for reliable decision-making, grounded in optimization and encompassing interpretability, structure-awareness, and causal reasoning, well-suited for high-stakes operational environments.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reverberation Mapping of Supermassive Black Holes using Machine Learning</title>
<link href="https://hdl.handle.net/1721.1/164512" rel="alternate"/>
<author>
<name>Lewin, Collin</name>
</author>
<id>https://hdl.handle.net/1721.1/164512</id>
<updated>2026-01-13T03:36:38Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Reverberation Mapping of Supermassive Black Holes using Machine Learning
Lewin, Collin
Accreting supermassive black holes at the centers of galaxies, known as active galactic nuclei (AGN), offer a unique window into the physics of accretion and feedback that shape galactic evolution. Yet, the small spatial scales of these regions remain inaccessible to direct imaging. Reverberation mapping circumvents this limitation by using time delays between correlated emission at different wavelengths to infer physical size scales. While X-ray reverberation probes the innermost accretion flow, continuum reverberation in the UV, optical, and infrared (UVOIR) traces reprocessing by the accretion disk and broad-line region (BLR). In this thesis, I develop and apply frequency-domain timing techniques based on Gaussian Process (GP) regression to study AGN reverberation across X-ray and UVOIR regimes. By modeling the empirical variability of AGN light curves with GPs, I interpolate onto an evenly sampled time grid, enabling robust estimation of Fourier-resolved time lags despite irregular sampling or large time gaps. I apply this method to NuSTAR observations of the Narrow-line Seyfert 1 galaxy Ark 564, introducing a multi-task GP model that jointly learns kernel hyperparameters across light curves. This enables the first simultaneous modeling of lag and flux spectra from both NuSTAR and XMM-Newton using a relativistic reverberation model to constrain black hole mass and disk properties. Recent reverberation campaigns with the Neil Gehrels Swift Observatory and ground-based telescopes have revealed significant discrepancies between observed inter-band lags and standard accretion disk theory. These include unexpectedly large lag amplitudes (the “accretion disk size problem”) and weak correlations between X-ray and UV/optical light curves. To investigate further, I analyze recent Swift campaigns of Mrk 335 and Mrk 817 using GP-based frequency-resolved lag analysis. In both sources, standard disk lags appear only on short timescales (high frequencies), while longer-than-expected lags dominate at low frequencies. These lag excesses are consistent with reprocessing at larger radii, similar to the BLR. Mrk 817 offers a rare opportunity to connect the inner and outer accretion flow: I detect the first simultaneous measurement of X-ray and UVOIR lags, effectively mapping the full disk. These lags vary significantly over the campaign, with longer delays during periods of stronger X-ray obscuration. This suggests that a disk wind may modulate the observed lags by introducing additional reprocessing and/or blocking ionizing flux from reaching more-distant material. To test this obscuration effect across a population, I conduct the first statistical study of UV/optical lag excess versus physical parameters across the Swift campaigns. The results show that the lag excess is driven entirely by obscured AGN, while the lags of unobscured sources are, on average, consistent with thin-disk theory. Regression analysis reveals that X-ray column density explains over 80% of the variance in lag excess. As for the X-ray/UV connection, obscured AGN also tend to show weaker correlations and more variable lags, suggesting that line-of-sight absorption not only contributes additional reprocessed emission that extends the UV/optical lags, but may also decouple or delay the X-ray and UV variability. To make GP-based time series analysis accessible to the community, I developed the STELA Toolkit, a fully documented Python package for computing frequency-domain data products using GPs. I also benchmark GP performance against other interpolation methods, including state-of-the-art transformers, paving the way for scalable, ML-enabled timing analysis in the era of time-domain surveys like Vera Rubin.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Learning Nonlinear Dynamics: Methods and Applications</title>
<link href="https://hdl.handle.net/1721.1/164511" rel="alternate"/>
<author>
<name>Rossi, Baptiste T.</name>
</author>
<id>https://hdl.handle.net/1721.1/164511</id>
<updated>2026-01-13T03:36:32Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Learning Nonlinear Dynamics: Methods and Applications
Rossi, Baptiste T.
Accurate modeling of dynamical systems through differential equations is essential for scientific prediction and prescriptive control. Traditional model development, which relies on expert knowledge, parameter fitting and validation, is often iterative, time-consuming, and complicated by real-world data complexities such as noise and missing observations. This thesis addresses these challenges by developing robust, scalable, and interpretable methods for learning nonlinear ordinary differential equations (ODEs) and partial differential equations (PDEs) directly from data, with a particular emphasis on applications in fluid dynamics.&#13;
&#13;
In Chapter 2, we introduce a novel methodology for learning arbitrary nonlinear ODEs using collocation methods combined with interpolation. This approach demonstrates enhanced robustness to noise and significant computational speed-ups compared to classical system identification techniques, including the popular SINDy framework. It also provides a constructive method for reconstructing unobserved system components, making it applicable to partially observed systems, and offers theoretical guarantees on accuracy traditionally absent in strong-form identification.&#13;
&#13;
In Chapter 3, we combine the approach from Chapter 2 with sparse regression to derive sparse ODEs from data, demonstrating enhanced robustness to observational noise. Our method shows improved performance in recovering the true structures and coefficients on canonical benchmark tests under significant noise, while the performance of traditional surrogate methods deteriorates even with minimal noise.&#13;
&#13;
In Chapter 4, we extend this methodology to Partial Differential Equations (PDEs) using the method of lines, addressing issues related to data scale and interpolation ill-posedness. With a focus on Computational Fluid Dynamics (CFD), we show that our method goes beyond recovering complex nonlinear PDEs, such as the Navier-Stokes equations, from simulation data. The method can also be used as an a-posteriori indicator of simulation quality, providing insights into the effective PDEs represented by a given simulation, and pinpointing error-generating areas to inform adaptive mesh techniques.&#13;
&#13;
Lastly, in Chapter 5, we introduce a novel data-driven framework for modeling turbulent phenomena, a long-standing challenge in aerospace and climate science. Our approach addresses the Reynolds-Averaged Navier-Stokes (RANS) closure problem, which involves modeling the unobserved eddy viscosity field. We tackle two interconnected inverse problems: reconstructing the eddy viscosity from flow data and discovering its governing partial differential equations (PDEs), thereby proposing a new pathway to uncover new or refined RANS closure models directly from high-fidelity simulations. This chapter establishes a tractable baseline using a composite loss function, which we evaluate on canonical turbulent flows. Our results demonstrate that while the approach can recover governing equations when the ground truth eddy viscosity is known, significant challenges remain due to noise and numerical errors. We conclude that a more advanced reconstruction methodology is essential for robustly discovering these models, underscoring the potential of this data-driven approach and identifying critical areas for future research.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Electronic Compressibility of Rhombohedral Graphene Multilayers</title>
<link href="https://hdl.handle.net/1721.1/164510" rel="alternate"/>
<author>
<name>Aronson, Samuel H.</name>
</author>
<id>https://hdl.handle.net/1721.1/164510</id>
<updated>2026-01-13T03:37:38Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">The Electronic Compressibility of Rhombohedral Graphene Multilayers
Aronson, Samuel H.
In condensed matter systems, energy bands with narrow dispersion frequently host correlated electronic phases that arise from strong Coulomb interactions. When these bands also have concentrated Berry curvature, the correlated phases may be topologically non-trivial. The low-energy bands of rhombohedral graphene multilayers possess both of these ingredients, making this a promising class of materials in which to search for correlated topological electronic ground states. This thesis describes our electronic compressibility measurements on rhombohedral graphene multilayers, with a particular focus on the pentalayer system (R5G). We utilize a planar capacitance technique that probes the thermodynamic density of states and enables us to extract energy gaps of incompressible phases. We observe a variety of correlated electronic phenomena including half and quarter metals, layer antiferromagnetism, correlation-driven Chern insulators, and thermodynamic signatures of potential Wigner crystallization. We also study the electronic compressibility of R5G aligned to a hexagonal boron nitride (hBN) substrate to form a moiré superlattice. Motivated by the recent discovery of the fractional quantum anomalous Hall effect in this system when the electrons are pushed away from the moiré interface by an external electric displacement field, we study the opposite moiré-proximal limit, in which the superlattice potential is considerably stronger. We observe integer and fractional Chern insulator states that persist down to low magnetic fields in addition to numerous trivial and topological charge density waves. We map out a phase diagram that is highly sensitive to both displacement and magnetic fields, establishing the R5G-hBN superlattice as a highly-tunable system for studying the interplay between intrinsic band topology and strong lattice effects.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hadronic Structure with Classical and Quantum Computing</title>
<link href="https://hdl.handle.net/1721.1/164509" rel="alternate"/>
<author>
<name>Avkhadiev, Artur</name>
</author>
<id>https://hdl.handle.net/1721.1/164509</id>
<updated>2026-01-13T03:36:35Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Hadronic Structure with Classical and Quantum Computing
Avkhadiev, Artur
Calculations in lattice quantum chromodynamics (QCD) — presently the only known systematically improvable approach to describe the strong nuclear force in the nonperturbative regime from first principles — are playing an increasingly important role in revealing how hadrons emerge from the interactions of the underlying degrees of freedom: quarks and gluons. With computational and theoretical advances, more fruitful connections have emerged between lattice QCD and phenomenology, and the field is now well into a stage ripe for deriving tighter constraints on hadronic structure through joint analyses of numerical lattice QCD results with experimental data.&#13;
 This thesis summarizes lattice QCD calculations of the Collins-Soper (CS) kernel: a nonperturbative function whose inclusion in joint analyses has the potential to advance the study of multidimensional hadronic structure. The CS kernel is an anomalous dimension of transverse-momentum-dependent (TMD) distributions describing a three-dimensional structure of ultrarelativistic hadrons as a function of quark-gluon momenta collinear with and transverse to the hadron's motion. Constraints on the CS kernel at nonperturbative transverse-momentum scales are instrumental to relate TMDs across scales and processes. The kernel differs for quark and gluon TMDs, but is otherwise universal. This thesis presents the first lattice QCD determination of the quark CS kernel with systematic control over operator mixing, quark mass, and lattice discretization, and a proof-of-principle lattice calculation of the gluon CS kernel providing the first nonperturbative constraints on this quantity.&#13;
 Additionally, this thesis summarizes exploratory studies on how Hamiltonian calculations — realized with quantum-computer simulations and tensor networks — may be combined with conventional Monte Carlo calculations based on Lagrangian formulations in Euclidean space. These studies examine how constructions of interpolating operators, used in conventional calculations to map between the vacuum and a ground state of interest, may be optimized in Hamiltonian calculations to increase overlap with the target state. Results, limited to the Schwinger model, support further investigations of this approach in theories more closely resembling QCD as quantum-computing and tensor-network technologies continue to mature.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Accelerating RTL Simulation Through Fine-grained Task Dataflow and Selective Execution</title>
<link href="https://hdl.handle.net/1721.1/164508" rel="alternate"/>
<author>
<name>Elsabbagh, Fares</name>
</author>
<id>https://hdl.handle.net/1721.1/164508</id>
<updated>2026-01-13T04:08:30Z</updated>
<published>2023-06-01T00:00:00Z</published>
<summary type="text">Accelerating RTL Simulation Through Fine-grained Task Dataflow and Selective Execution
Elsabbagh, Fares
Fast simulation of digital circuits is crucial to build modern chips. Current processors and SoCs integrate hundreds of complex components, including cores, accelerators, and memory hierarchies. Simulating these systems is necessary to verify correctness and explore the design space. Simulation can happen at different levels of abstraction. In this work we focus on Register-Transfer-Level (RTL) simulation. While RTL simulators are frequently used in development due to their quick compilation times, their runtime performance is slow. This is because as the designs are scaled up, multicore communication and scheduling overheads limit performance and scalability.&#13;
&#13;
We present ASH, a parallel architecture tailored to RTL simulation workloads. ASH consists of a tightly codesigned hardware architecture and compiler for RTL simulation. ASH exploits two key opportunities. First, it performs dataflow execution of small tasks to leverage the fine-grained parallelism in simulation workloads. Second, it performs selective event-driven execution to run only the fraction of the design exercised each cycle, skipping ineffectual tasks. ASH hardware provides a novel combination of dataflow and speculative execution, and ASH’s compiler features several novel techniques to automatically leverage this hardware.&#13;
&#13;
We evaluate ASH in simulation using large Verilog designs that represent different types of architectures. With 256 simple cores, ASH is gmean 1,485× faster than 1-core Verilator, and it is 32× faster than Verilator on a server CPU with 32 complex cores while using 3× less area.
</summary>
<dc:date>2023-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Task Scheduling Techniques to Accelerate RTL Simulation</title>
<link href="https://hdl.handle.net/1721.1/164507" rel="alternate"/>
<author>
<name>Sheikhha, Shabnam</name>
</author>
<id>https://hdl.handle.net/1721.1/164507</id>
<updated>2026-01-13T04:08:25Z</updated>
<published>2023-06-01T00:00:00Z</published>
<summary type="text">Task Scheduling Techniques to Accelerate RTL Simulation
Sheikhha, Shabnam
Fast simulation of digital circuits is crucial to build modern chips. Slow simulation lengthens chip design time and makes bugs more frequent. While simulation can happen at different levels of abstraction, Register-Transfer-Level (RTL) simulation is the usual bottleneck in chip design, as it is needed for ongoing debugging and evaluation. Current simulators scale poorly across CPU cores, because they are unable to exploit the fine-grained parallelism inherent in simulation workloads.&#13;
&#13;
We present ASH, a parallel architecture tailored to simulation workloads. ASH consists of a tightly codesigned hardware architecture and compiler for RTL simulation. ASH exploits two key opportunities. First, it performs dataflow execution of small tasks to leverage the fine-grained parallelism in simulation workloads. Dataflow execution exposes abundant parallelism, as each task can run as soon as its inputs are available. Second, it performs selective event-driven execution to run only the fraction of the design exercised each cycle, skipping ineffectual tasks. Selective execution introduces dynamic data dependences since skipped tasks do not communicate data. ASH employs speculative execution to handle these dependencies. ASH’s hardware provides a novel combination of dataflow and speculative execution, and ASH’s compiler features several novel techniques to automatically leverage this hardware. The key compiler techniques include a novel partitioning for minimizing data communication while maintaining load balance, and a strategic coarsening mechanism to reduce the overheads of fine-grained tasks.&#13;
&#13;
We evaluate ASH in simulation using large Verilog designs. With 256 simple cores, ASH is gmean 1,485× faster than 1-core Verilator, and it is 32× faster than Verilator on a server CPU with 32 complex cores while using 3× less area.
</summary>
<dc:date>2023-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Scheduling Strategies for Bus Operator Retention: A Mixed-Methods Evaluation of Bus Operator Preferences and 4-Day Workweek Feasibility</title>
<link href="https://hdl.handle.net/1721.1/164506" rel="alternate"/>
<author>
<name>Baum, Amelia Rose</name>
</author>
<id>https://hdl.handle.net/1721.1/164506</id>
<updated>2026-01-13T04:08:29Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Scheduling Strategies for Bus Operator Retention: A Mixed-Methods Evaluation of Bus Operator Preferences and 4-Day Workweek Feasibility
Baum, Amelia Rose
Public transit agencies face significant and growing challenges related to workforce shortages, absenteeism, and employee retention, which threaten service reliability. Reports found that 90% of U.S. transit agencies are experiencing a workforce shortage, with 84% claiming that the shortage affects their ability to provide scheduled service. Industry-wide, operator absence is a significant contributor to missed work at transit agencies nationwide and has, in many cases, delayed the full reinstatement of service at transit agencies following the COVID-19 pandemic. The quality of bus operators' work is significantly impacted by inflexible crew scheduling constraints. However, most studies focus on pay, benefits, and infrastructure, neglecting the importance of scheduling. This thesis aims to fill this gap by examining the potential for crew scheduling improvements to enhance the quality of life for bus operators through a three-part case study at the Chicago Transit Authority. Part 1 analyzes the historical work preferences of CTA bus operators, providing actionable insights for scheduling improvements. Part 2 presents a high-fidelity proof of concept in HASTUS, using block schedules (10-hour-a-day runs that are intended to be run by an operator 4 days a week) and rostering to reduce negative work traits, increase consecutive and weekend days off for most operators, while maintaining schedules for the top 20% of senior operators. Part 3 evaluates the new 10-hour, 4-day-per-week packaged schedules via an LLM-based paired alternatives survey of operators at one CTA garage, measuring the desirability of the proof of concept and collecting qualitative feedback. Overall, the new schedules substantially improve the quality of work for operators by guaranteeing at least one weekend day off, at least two consecutive days off, and increasing day-to-day schedule consistency and overnight rest time, while maintaining constant vehicle requirements and total pay hours. The survey results show that 72% of operators at the 74th Street garage support the new schedule paradigm, demonstrating strong support for their potential adoption and encouraging future exploration of a block schedule hybrid rostering paradigm at the CTA and other transit agencies.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Charcuterie Platter of QCD Matter</title>
<link href="https://hdl.handle.net/1721.1/164505" rel="alternate"/>
<author>
<name>Sun, Zhiquan</name>
</author>
<id>https://hdl.handle.net/1721.1/164505</id>
<updated>2026-01-13T03:37:36Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A Charcuterie Platter of QCD Matter
Sun, Zhiquan
One of the greatest current challenges in theoretical high energy physics is to understand the dynamics of Quantum Chromodynamics (QCD). In this thesis, I address a variety of questions in QCD using Effective Field Theory (EFT). The first question deals directly with the observed phenomenology of QCD: How can we use EFT to disentangle the complicated three-dimensional dynamics of how quarks and gluons, the fundamental degrees of freedom of QCD, combine to form the observed bound states in nature called hadrons? I initiate a new formalism using Heavy Quark Effective Theory to study this dynamical process known as hadronization. I shed new light on the transverse momentum-dependent fragmentation process of heavy (charm and bottom) quarks by making use of the fact that heavy quarks with masses much larger than the strong interaction scale decouple from the rest of the hadronization cascade. I also present exciting heavy quark phenomenology at existing colliders and the upcoming Electron-Ion Collider. The second question investigates the field theory structure of QCD: What can we learn about the nonperturbative structure of the quantum field theory through the abstruse emergent phenomenon in QCD called “confinement”, which traps quarks and gluons inside hadrons? I study a class of cleverly constructed observables known as energy correlators by using fieldtheory based methods to determine the leading nonperturbative contribution, and examine the universality of the nonperturbative matrix element that gives rise to this contribution. I also show that including the nonperturbative contribution has a significant impact on the extraction of the strong coupling constant, a fundamental parameter of the Standard Model, using tools such as factorization and resummation from EFT. Last but not least, the final question explores the underlying symmetry properties of QCD and its potential completions: How robust is the axion solution to the strong CP (ChargeParity) problem, and what are some of its implications beyond the realm of QCD? I examine the axion quality problem in post-inflationary QCD axion models with different symmetry properties and identify a new tension with standard cosmology. I further show that the axion string-domain wall dynamics is more complicated than commonly expected, undermining the reliability of a unique mass prediction for axion dark matter in post-inflationary models. I showcase the importance of considering both high-energy extensions and the EFT at low energy, and uncover new complexity of the axion solution to the strong CP problem.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Learning from pre-pandemic data to design and test future-proof therapeutics</title>
<link href="https://hdl.handle.net/1721.1/164504" rel="alternate"/>
<author>
<name>Gurev, Sarah</name>
</author>
<id>https://hdl.handle.net/1721.1/164504</id>
<updated>2026-01-13T03:37:25Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Learning from pre-pandemic data to design and test future-proof therapeutics
Gurev, Sarah
Effective pandemic preparedness relies on predicting immune-evasive viral mutations to enable early detection of variants of concern and design vaccines and therapeutics that are resilient to future viral evolution. However, current strategies for viral evolution prediction are not available early in a pandemic and have limited predictive power – experimental approaches require host polyclonal antibodies and existing computational methods draw heavily from current strain prevalence. In addition, vaccines and therapeutics have been designed with an eye towards past or circulating variants, not towards future evolution. To address these challenges, we developed EVEscape, a generalizable framework that integrates fitness predictions from a deep generative model of evolutionary sequences with biophysical and structural information. EVEscape quantifies the immune escape potential of viral strains at scale and is applicable before surveillance sequencing, experimental scans, or 3D structures of antibody complexes are available. We demonstrate that EVEscape, trained on sequences available prior to 2020, performs as accurately as high-throughput experimental scans at anticipating pandemic variation for SARS-CoV-2 and is generalizable to other viruses including Influenza A virus, HIV, and understudied viruses with pandemic potential such as Lassa and Nipah. We investigate both alignment-based and protein language models to explore the best model of mutation effects across pandemic-threat viral families. We demonstrate the utility of EVEscape in three critical applications: (1) Surveillance efforts flagging high escape SARS-CoV-2 variants from their first appearance (2) Design of panels of viral antigens that mimic future viral variants for early, proactive evaluation of the future protection of vaccines and therapeutic; and (3) Design of a pan-sarbecovirus nanoparticle-based vaccine capable of eliciting broad, long-lasting protection against sarbecoviruses, including future variants. This three-pronged approach represents a paradigm shift in pandemic preparedness, offering a novel strategy to preemptively address viral families with pandemic potential and significantly bolster global prevention efforts.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Topics in quantum information theory and quantum&#13;
many-body physics</title>
<link href="https://hdl.handle.net/1721.1/164503" rel="alternate"/>
<author>
<name>Balasubramanian, Shankar</name>
</author>
<id>https://hdl.handle.net/1721.1/164503</id>
<updated>2026-01-13T03:37:33Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Topics in quantum information theory and quantum&#13;
many-body physics
Balasubramanian, Shankar
In this thesis we present two results relating to the intersection between quantum information theory and quantum many-body physics. The first pertains to quantum algorithms, where few computational problems are believed to exhibit exponential separation between quantum and classical performance. For those that are, natural generalizations remain elusive. One speedup that has especially resisted generalization is the use of quantum walks to traverse the welded tree graph, due to Childs, Cleve, Deotto, Farhi, Gutmann, and Spielman. We show how to generalize this to a large class of hierarchical graphs in which the vertices are grouped into “supervertices” that are arranged according to a d-dimensional lattice. Supervertices can have different sizes, and edges between supervertices correspond to random connections between their constituent vertices. The traversal time of quantum walks on these graphs are related to (a) the existence of small subspaces within which the quantum walk evolves and (b) the localization properties of the quantum walk within these subspaces. We find examples of hierarchical graphs that yield provable speedups over classical algorithms ranging from superpolynomial to exponential, depending on the underlying dimension and the random graph model. We also discuss how to relax criterion (a) to the existence of a small and approximate subspace by using techniques from graph sparsification. The second result pertains to fault-tolerant quantum memories. Storing a qubit in a noisy environment is crucial for developing full-scale quantum computers. While constructions of fault-tolerant quantum memories exist, they often assume that quantum operations are not local and assisting classical computation operates instantaneously and noislessly. In particular, constructing a topological quantum memory below four dimensions with local quantum and classical operations that is fault-tolerant under both quantum and classical noise is an open problem. We construct a local quantum memory for the 2D toric code using ideas from the classical cellular automata of Tsirelson and Gács. Our memory preserves a logical state for exponential time in the presence of both classical and quantum noise below a constant noise rate. While our 2D quantum memory is built from operations that depend on space and time, we construct a fault-tolerant quantum memory in 3D using stacks of 2D toric codes that can be built with time-independent operations.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantum Matter in the Era of Generalized Symmetries</title>
<link href="https://hdl.handle.net/1721.1/164502" rel="alternate"/>
<author>
<name>Chatterjee, Arkya</name>
</author>
<id>https://hdl.handle.net/1721.1/164502</id>
<updated>2026-01-13T03:37:15Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Quantum Matter in the Era of Generalized Symmetries
Chatterjee, Arkya
The discovery of generalized symmetries has led to powerful new insights into quantum matter. They have been used to classify new families of quantum phases, place constraints on phases realizable in a given physical system, and conceptually unify seemingly disparate phenomena. In many ways, they prove just as powerful as traditional symmetries at organizing and constraining the theories that describe quantum matter. In this thesis, we attempt a unification of such constraints by developing a holographic correspondence between (generalized) symmetries and topological orders, called the Sym/TO correspondence. For any (finite internal) symmetry of a quantum system in d (spatial) dimensions, we associate with it a unique topological order in d + 1 dimensions, called its Symmetry Topological Order (SymTO). We devise an operator algebraic recipe to compute the SymTO data for any lattice spin model, demonstrating it in a number of examples. We then use the SymTO to classify possible quantum phases allowed by the symmetry—we call this a generalized Landau paradigm. Besides classifying phases, we also identify constraints on the phase transitions between them using a SymTO-resolved modular bootstrap. We test this framework in a quantum spin chain with non-invertible symmetries. We discover a new Kramers-Wannier-like duality and a rich phase diagram including a noninvertible symmetry-enriched incommensurate phase. The translation symmetry of the spin chain has a nontrivial interplay with the lattice Kramers-Wannier duality, which matches the anomaly of the corresponding non-invertible symmetry in the low-energy effective field theory. Finally, we explore such unusual anomaly-matching mechanisms in more detail in the context of the chiral anomaly of a single massless Dirac fermion, demonstrating a novel lattice realization of chiral symmetries and their anomaly.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Systems Materials Design of Ordered Nanocomposite Assemblies</title>
<link href="https://hdl.handle.net/1721.1/164501" rel="alternate"/>
<author>
<name>Thrasher, Carl James</name>
</author>
<id>https://hdl.handle.net/1721.1/164501</id>
<updated>2026-01-13T03:37:31Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Systems Materials Design of Ordered Nanocomposite Assemblies
Thrasher, Carl James
The ability to precisely organize matter across multiple length scales is a central challenge in modern materials science. In this dissertation, I develop a systems materials design approach to engineer hierarchically structured nanocomposite assemblies, integrating molecular recognition, supramolecular chemistry, colloidal assembly, and bulk processing into unified material platforms. At the molecular and nanoscale, I investigate how multivalent supramolecular interactions can be rationally programmed by controlling the architecture of polymer binders grafted to nanoparticle surfaces. Through systematic variations in polymer topology, recognition group density, and scaffold geometry, I demonstrate how polymer design dictates the thermodynamic strength and multivalency of nanoparticle superlattice assembly, enabling precise control of thermal stability,&#13;
crystallographic symmetry, and collective bonding behaviors in massively multivalent systems. Building on these design principles, I develop a colloidal metallurgy framework to process selfassembled nanoparticle superlattices into dense macroscopic polycrystalline solids while preserving nanoscale order. By systematically studying the interplay of temperature, pressure, and time during colloidal sintering, I elucidate mechanisms of densification, defect evolution, and grain growth unique to colloidal systems, establishing processing–structure relationships that parallel but fundamentally diverge from atomic sintering. Finally, I extend these concepts to create stretchable nanocomposite supercrystals, embedding supramolecularly assembled superlattices into elastomeric matrices via co-engineered polymer chemistries that enable hierarchical strain&#13;
transduction. These materials combine the nanoscale precision of supercrystals with mechanical robustness, reconfigurability, and stimuli-responsive optical properties, illustrating a scalable pathway to multifunctional metamaterials. Collectively, this work demonstrates how a systemslevel integration of molecular design, colloidal assembly, and bulk processing enables new&#13;
paradigms for the synthesis of hierarchically ordered, functional nanocomposites.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The novel roles of BCL6 and BATF3 in regulating human&#13;
CD8⁺ T cell dysfunction</title>
<link href="https://hdl.handle.net/1721.1/164500" rel="alternate"/>
<author>
<name>Traunbauer, Anna Katharina</name>
</author>
<id>https://hdl.handle.net/1721.1/164500</id>
<updated>2026-01-13T03:36:48Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">The novel roles of BCL6 and BATF3 in regulating human&#13;
CD8⁺ T cell dysfunction
Traunbauer, Anna Katharina
Reduced effector function and elevated inhibitory receptor expression are hallmarks of exhausted CD8⁺ T cells, yet the underlying molecular and epigenetic drivers remain incompletely defined. Here, we developed an in vitro repeated stimulation model to recapitulate features of human CD8⁺ T cell dysfunction and delineate transcriptional and epigenetic landscapes. Our analyses revealed that BCL6 and BATF3 are robustly upregulated in dysfunctional CD8⁺ T cells, with ATAC-seq demonstrating enhanced chromatin accessibility at their gene loci. Transcription factor footprinting shows increased BATF3 motif occupancy in chronically stimulated cells and integrative multi-omic analysis combining footprints, open chromatin regions, RNA-seq and ChIP-seq data revealed that putative BATF3 target genes may include master regulators of exhaustion. Moreover, overexpression of BCL6 or BATF3 markedly upregulates TIM-3 expression and suppressed cytokine release, establishing their capacity to induce T cell dysfunction. We further validated these findings ex vivo in antigen-specific CD8⁺ T cells from patients with advanced melanoma, as well as HCV and HIV infections, where cells were enriched for BCL6^high and BATF3^high subsets co-expressing canonical exhaustion markers such as PD-1, TIM-3 and CD39. Notably, Single-cell RNA sequencing of HIV-specific CD8⁺ T cells identified a distinct BCL6^high PD1⁻ progenitor population that gives rise to two distinct subsets via divergent differentiation trajectories: one branch generates effector-like BCL6^high PD1⁺ cells, whereas the other produces BCL6^high PD1⁺ cells that retain an exhaustion gene signature alongside partial memory-like feature. Collectively, these findings identify BCL6 and BATF3 as key mediators of human CD8⁺ T cell dysfunction and illuminate novel transcriptional and epigenetic pathways that may be leveraged for therapeutic intervention in cancer and chronic viral infections.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Aspects of Nonperturbative Heavy Quark Physics</title>
<link href="https://hdl.handle.net/1721.1/164499" rel="alternate"/>
<author>
<name>Lin, Joshua</name>
</author>
<id>https://hdl.handle.net/1721.1/164499</id>
<updated>2026-01-13T03:37:27Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Aspects of Nonperturbative Heavy Quark Physics
Lin, Joshua
The properties of charm and bottom quarks are an interesting corner of Quantum Chromo-Dynamics (QCD) due to the fact that their masses are much heavier than the typical QCD interaction energy ΛQCD. Due to this scale separation, it is possible to describe these heavy quarks by Effective Field Theories (EFTs) that simplify their equations of motion, make explicit additional symmetries that only appear for heavier quark masses, and simplify the theoretical calculations required for predictions. By discretising these EFTs in a lattice regularisation, nonperturbative calculations of observables of interest become possible. This thesis presents progress towards systematically controlled calculations of two such observables: the Spectator Effect contributions to the inclusive decay rates of b-hadrons, and the real-time dynamics of fermions propagating in a thermal medium. Standard EFT calculations in Lattice-QCD proceed by expressing observables as sums over perturbatively computed Wilson coefficients and nonperturbative matrix elements that can be calculated by path integral monte-carlo methods. Though it is possible to carry out this procedure within a regulator-independent renormalization scheme, in practice almost all such decompositions are computed in the modified minimal subtraction scheme MS which is only defined for the dimensional regulator (DR), due to its simplicity. Computing such observables therefore requires a matching between lattice regularised operators and operators renormalized in MS. In Chapter 2, both the dimensional regulator (DR) and the lattice regulator are reviewed, with a particular emphasis on techniques needed for calculations carried out in later sections. An interesting subtelty in DR is the need to introduce d-dimensional counterparts to the Dirac γ-matrices, which a-priori are only well defined in integer number of dimensions. This analytic continuation is of practical importance as it introduces additional Evanescent Operators (Sec. 2.1.4) that have physical consequences. In Sec. 2.1.5, traces of d-dimensional γ-matrices were related to Tutte polynomial evaluations [4], presenting a new graph-theoretic interpretation of the dimensionally regulated γ-matrices. One strategy of renormalizing lattice-regulated operators into MS involves first renormalizing into a regulator independent scheme, before perturbatively matching between the regulator independent scheme and MS. In Chapter 3, regulator independent position-space (X-space) schemes for renormalizing operators defined in the leading order Heavy Quark Effective Theory (HQET) are proposed [3]. Compared to other regulator independent renormalization schemes such as RI-xMOM, X-space schemes have the benefit that they are gauge invariant. The next to leading order matching calculations between X-space and MS are presented for heavy-light and heavy-light-light multiplicatively renormalizable operators, as well as ∆Q = 0 and ∆Q = 2 four quark operators relevant for heavy hadron decays and mixing, where Q refers to the static quark number. Due to their heavy masses, hadrons containing heavy quarks decay via the weak nuclear force. Experimental measurements of these lifetimes provide precision determinations of the fundamental parameters of the Standard Model. The Heavy Quark Expansion expresses the inclusive lifetimes of heavy hadrons in terms of matrix elements of HQET operators of increasing dimension. The Spectator Effects are contributions due to the ∆Q = 0 four-quark operators, where the light quark degrees of freedom within a heavy hadron participate in the decay. In Chapter 4, a Lattice-QCD determination of the static decay constant f HQET B and the isospin-nonsinglet portion of the Spectator Effect matrix elements for heavy-light mesons is presented. Fits of bare matrix elements were performed for three different lattice spacings, and renormalized with the schemes proposed in Chapter 3 before a continuum limit is taken. Due to the heavy masses mQ of the heavy quarks, it is possible to find temperatures T approximately satisfying a hierarchy ΛQCD ≪ T ≪ mQ. At these temperatures, QCD undergoes a deconfinement transition into the Quark-Gluon-Plasma (QGP) phase where the light degrees of freedom are no longer confined, and instead screen the long-range colour forces. The heavy quarks however are not thermalised, and act as probes of the QGP. Further understanding of the QGP requires first principles simulations of the heavy quark dynamics at finite temperature, however such calculations are difficult due to the enormous size of the Hilbert space. Variational approximations of the Hilbert space encode wavefunctions within a few parameters, and provide a practical method to simulate many particle systems. As a testcase, the variational approach was applied for the first time to simulate fermions at finite temperature in a simple QFT: the 1+1d U(1) gauge theory known as the massive Schwinger model. Both the real-time dynamics of string like states, and the properties of the thermal state were studied, and such variational methods are shown to be promising approaches to the more difficult case of a heavy quark effective theory in QCD.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Probing the Nonperturbative Physics of QCD with&#13;
Normalizing Flows and a moderate number of Pions</title>
<link href="https://hdl.handle.net/1721.1/164498" rel="alternate"/>
<author>
<name>Abbott, Ryan William</name>
</author>
<id>https://hdl.handle.net/1721.1/164498</id>
<updated>2026-01-13T03:36:19Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Probing the Nonperturbative Physics of QCD with&#13;
Normalizing Flows and a moderate number of Pions
Abbott, Ryan William
Quantum Chromodynamics (QCD) is a cornerstone of the standard model of particle physics, and the best known theory of strong nuclear interactions. The only known systematically improvable ab-initio method for accessing the nonperturbative physics of QCD is Lattice QCD is, and this thesis presents two advances in our understanding QCD using lattice-based methods. The first is a calculation using many-pion systems to map out the entire zero temperature, nonzero isospin density region of the QCD phase diagram. The calculation uses novel methods for working with many-pion systems that enables working with thousands of pions, and furthermore provides rigorous constraints on the baryon-dense region of the QCD phase diagram. The second is an application of methods from machine learning (namely normalizing flows) in order to accelerate sampling. This approach has the promise of eliminating issues such as critical slowing down, as well as introducing novel tools and methods that enable methods of calculation that would be possible otherwise.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Limits of QCD</title>
<link href="https://hdl.handle.net/1721.1/164497" rel="alternate"/>
<author>
<name>Gao, Anjie</name>
</author>
<id>https://hdl.handle.net/1721.1/164497</id>
<updated>2026-01-13T03:37:21Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Limits of QCD
Gao, Anjie
This thesis explores the fundamental kinematic limits of Quantum Chromodynamics (QCD), including the soft, collinear, and Regge limits, using soft-collinear effective theory (SCET). We begin by studying transverse momentum dependent (TMD) physics in semi-inclusive deep inelastic scattering (SIDIS), which probes the small transverse momentum regime arising from the soft and collinear limits of QCD. We derive all-order factorization theorems for azimuthal asymmetries in SIDIS at next-to-leading power (NLP). We also propose a new angular observable, q_∗, for probing TMD dynamics at the future Electron-Ion Collider (EIC), which enables an order-of-magnitude improvement in experimental resolution while retaining sensitivity to TMD distributions. Next, we apply the TMD formalism to a class of observables known as energy correlators. We study the transverse energy-energy correlator (TEEC) in the back-to-back limit, a dijet observable at hadron colliders, and the three-point energy correlator (EEEC) in the coplanar limit, a trijet observable at lepton colliders. For both observables, we derive allorder factorization theorems and resum large logarithms to next-to-next-to-next-to-leading logarithmic (N3LL) accuracy. Finally, we analyze the Regge limit of 2 → 2 QCD amplitudes. By factorizing these amplitudes into collinear jet and soft functions and studying their rapidity evolution, we define Regge-like anomalous dimensions in a gauge-invariant manner. At the level of the exchange of two Glauber gluons in the t-channel, we recover the BFKL equation from a purely collinear perspective. Extending to three-Glauber exchange, we derive the first closed-form renormalization group equations for Regge cut contributions in several nontrivial t-channel color representations, providing a systematic method for organizing non-planar QCD amplitudes at high energy.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Determining the Molecular Underpinnings of Iron Homeostasis in Human Cells</title>
<link href="https://hdl.handle.net/1721.1/164496" rel="alternate"/>
<author>
<name>Lee, April</name>
</author>
<id>https://hdl.handle.net/1721.1/164496</id>
<updated>2026-01-13T03:35:45Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Determining the Molecular Underpinnings of Iron Homeostasis in Human Cells
Lee, April
Precise regulation of nutrient availability is crucial for cellular function and survival. Iron, in particular, is tightly regulated as it serves as an essential cofactor for numerous enzymes but can catalyze the formation of toxic radicals at elevated levels. To maintain the necessary cytoplasmic iron concentration, cells store excess iron in large proteinaceous cages called ferritin and, when available iron levels fall, they degrade these cages, liberating the stored iron for use. This thesis focuses on the molecular mechanisms underlying cellular iron sensing, as well as the molecular interactions supporting regulated ferritin degradation and subsequent iron release. Specifically, this work interrogates the protein interactions involved in ferritinophagy, a form of selective autophagy that leads to the lysosomal degradation of ferritin. Extending prior work that identified key components supporting ferritinophagy, including the selective autophagy receptor protein NCOA4 and its cognate autophagosomal receptor GATE16, experiments described here uncover the molecular contacts between these proteins. I found that NCOA4 bears two short linear motifs that each bind to GATE16 with weak affinity. However, these binding motifs are highly avid and, in concert, support high-affinity binding of NCOA4 to oligomerized GATE16. I further describe that ferritin degradation in cultured human cells relies on the contacts I identified biochemically. Moreover, I found that iron decreases NCOA4’s affinity for GATE16, providing a plausible mechanism for irondependent regulation of ferritinophagy. Taken together, this work suggests a general mechanism by which selective autophagy receptors can distinguish between inactive monomeric GATE16 and the active oligomerized forms that primarily drive autophagy. In related studies, I have biochemically probed the NCOA4•ferritin interface, with these experiments suggesting a novel function of NCOA4 in modulating ferritin cage structure – either through cage dismantling or through the formation of higher order structures. Taken together, these studies further define the molecular mechanisms by which NCOA4 aids cells in maintaining iron homeostasis, and they provide the requisite reagents for future work aimed at building a unified model for how mammalian cells regulate this vital but toxic metal.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sampling Methods for Fast and Versatile GNN Training</title>
<link href="https://hdl.handle.net/1721.1/164495" rel="alternate"/>
<author>
<name>Alkhatib, Obada</name>
</author>
<id>https://hdl.handle.net/1721.1/164495</id>
<updated>2026-01-13T04:08:28Z</updated>
<published>2022-09-01T00:00:00Z</published>
<summary type="text">Sampling Methods for Fast and Versatile GNN Training
Alkhatib, Obada
Graph neural networks (GNNs) have become a commonly used class of machine learning models that achieve state-of-the-art performance in various applications. A prevalent and effective approach for applying GNNs on large datasets involves mini-batch training with sampled neighborhoods. Numerous sampling algorithms have emerged, some tailored for specific GNN applications. In this thesis, I explore ways to improve the efficiency and expressivity of existing and emerging sampling schemes. &#13;
&#13;
First, I explore system solutions to facilitate the development of fast implementations of different sampling methods. I introduce FlexSample, a system for efficiently incorporating custom sampling algorithms into GNN training. FlexSample leverages the types of performance optimizations found in SALIENT, a state-of-the-art system for fast training of GNNs with node-wise sampling. In experiments with 4 GNN models which use layer-wise and subgraph sampling, FlexSample achieves up to 1.3× speed-up for end-to-end training over PyTorch Geometric with the same sampling code. Furthermore, FlexSample extends SALIENT with highly-optimized C++ implementations of FastGCN and LADIES layer-wise sampling, which achieve 2×–5× speed-up over their respective Python implementations.&#13;
&#13;
Second, I introduce a novel framework for learning neighbor sampling distributions as part of GNN training. Key components of this framework, which I name PertinenceSample, are: (i) a differentiable approximation of node-wise sampling for GNNs; and (ii) a parametrization of node sampling distributions as node- or edge-wise weights of attention-like GNN layers. I present an initial exploration of the potential of PertinenceSample for improving node classification accuracy in the presence of noisy edges. Specifically, in two synthetic experiments where roughly half of a node’s neighbors may have similar features but different labels, I demonstrate that extending a GraphSAGE model with a 2-layer perceptron for learning the PertinenceSample weights can improve classification accuracy from 50%–75% to (nearly) 100%.
</summary>
<dc:date>2022-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Designing Electrocatalysts for the Production and Oxidation of Liquid Fuels</title>
<link href="https://hdl.handle.net/1721.1/164494" rel="alternate"/>
<author>
<name>Zheng, Daniel J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164494</id>
<updated>2026-01-13T03:35:35Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Designing Electrocatalysts for the Production and Oxidation of Liquid Fuels
Zheng, Daniel J.
With the ever-rising CO₂ levels in the atmosphere, it is paramount to cease reliance on fossil fuels to meet global energy demands. While the cost of electricity from renewable sources, such as solar and wind, continues to decrease and has even fallen below that of fossil fuels since 2014, these renewable energy sources suffer from intermittency, potentially causing shortages at peak demands. Thus, methods to store or economically use excess renewable energy are needed for full decarbonization. One promising avenue is to store the excess generated electrical energy in chemical bonds, creating molecules and materials with industrial or energy storage utility. In this proposed scheme, the renewable electricity would be used to electrochemically convert earth-abundant molecules into value-added chemical or fuels. These generated products could then be utilized as feedstocks in industrial applications or as a fuel source to generate electricity when needed by transforming back into their earth-abundant forms.&#13;
&#13;
Central to transforming earth-abundant molecules into value-added chemicals or fuels is the oxygen evolution reaction (OER), which is found in nearly every process. The plentiful nature of OER’s main reactant, water, and moderate thermodynamic potential of 1.23 V vs. the reversible hydrogen electrode, make OER an ideal reaction to pair with other transformations. However, the slow kinetics of OER significant hinder the efficiency of these processes. As such, discovering new OER catalysts with high activity and stability would have wide-spread impacts. On the other hand, one of the most promising renewable fuel sources is methanol, which boasts about 3 times the energy density of hydrogen and can be used as an alternative to hydrogen in proton exchange membrane fuel cells. However, the sluggish kinetics of the methanol oxidation reaction (MOR), even with current state-of-the-art noble metal catalysts causes direct methanol fuel cells to reach an efficiency of &lt;40%, limiting their practical usage. While significant research has been invested in discovering new MOR electrocatalysts, PtRu has reigned for 5 decades, highlighting the need for a true breakthrough. &#13;
&#13;
In this thesis, electrocatalysts for OER and MOR are examined in depth. For OER, metal-hydroxide organic frameworks (MHOFs), a promising new class of hybrid organic-inorganic materials with potential to mimic the superior functionality of enzymes, are studied. Operando vibrational and absorption spectroscopy methods are used to characterize the degradation mechanisms and lattice oxygen exchange capacity as a function of the linkers. Using such knowledge, defects are engineered into the MHOF that increase both the activity and stability compared to the pristine material. Furthermore, the traditionally reported MOR mechanism is studied using isotope-labeled reactants and operando mass spectrometry. These experiments revealed that, in contradiction to typically accepted mechanisms, the C-O bond in methanol can be cleaved during MOR, with the resulting CO₂ molecule containing two water-derived oxygen atoms, opening a new paradigm for MOR catalyst design. Driven by the need to discover new materials at scale, a fluorescence-based OER catalyst screening method is developed that can screen an entire composition space simultaneously. In addition, an AI-driven, automated platform for screening a high-dimensional multimetallic space for MOR is presented.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bridging the Gap: From Artificial Intelligence and Optimization Theory to Action</title>
<link href="https://hdl.handle.net/1721.1/164493" rel="alternate"/>
<author>
<name>Petridis, Periklis S.</name>
</author>
<id>https://hdl.handle.net/1721.1/164493</id>
<updated>2026-01-13T03:37:10Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Bridging the Gap: From Artificial Intelligence and Optimization Theory to Action
Petridis, Periklis S.
Despite significant theoretical advances in Operations Research (OR) and Artificial Intelligence (AI), a persistent gap remains between these developments and their practical implementation in real-world settings. Despite significant progress in these fields, many OR and ML approaches struggle to scale to realistic problem sizes, lack robustness to uncertainty, or fail to address implementation constraints faced by practitioners in industry. Through four distinct works conducted in collaboration with industry partners, this research demonstrates how methodological advancements can bridge this theory-practice divide while maintaining rigorous theoretical foundations and guarantees. In the first part, we focus on optimization methodologies that scale traditional OR approaches to handle real-world problem sizes and uncertainty. In Chapter 2, we develop a stochastic Benders decomposition scheme for large-scale network design problems, a class of problems ubiquitous in logistics, transportation, and energy sectors. By incorporating sampling techniques within the decomposition framework, we achieve deterministic optimality guarantees while reducing computational costs, enabling solutions for networks with 700 nodes—an order of magnitude larger than previously tractable instances—while achieving optimality gaps of 5-7% compared to 16-27% for traditional deterministic approaches. In Chapter 3, we present a holistic framework for industrial decarbonization, developed with a major phosphate producer planning to quadruple energy consumption while transitioning to renewable sources. Our robust optimization approach combines strategic capacity expansion planning over a 25-year horizon with adaptive operational models, providing 95% reliability guarantees while balancing solar and wind integration with battery storage to meet a projected 12 TWh annual demand. In the second part, we shift our focus to developing AI systems that address the unique challenges of medical data abstraction and clinical decision support. In Chapter 4, we address the challenge of automating clinical data abstraction from electronic health records, collaborating with the Society of Thoracic Surgeons to populate their Adult Cardiac Surgery Database. Our AI pipeline combines 31 models per target variable with a two-tiered quality control system, achieving over 99% accuracy while automatically extracting 43-50% of registry variables, demonstrating how AI can dramatically reduce manual abstraction burden while maintaining clinical standards. In Chapter 5, we extend this healthcare AI focus by developing xHAIM (Explainable Holistic AI in Medicine), which addresses the limitations of current clinical AI systems in handling extensive patient records, providing interpretability, and incorporating medical knowledge. Through semantic similarity techniques and generative AI, xHAIM improves predictive performance while generating clinically grounded explanations that enhance trust and adoption by healthcare practitioners.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multi-species genome-wide CRISPR screens identify conserved suppressors of cold-induced cell death</title>
<link href="https://hdl.handle.net/1721.1/164492" rel="alternate"/>
<author>
<name>Lam, Breanna</name>
</author>
<id>https://hdl.handle.net/1721.1/164492</id>
<updated>2026-01-13T03:36:20Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Multi-species genome-wide CRISPR screens identify conserved suppressors of cold-induced cell death
Lam, Breanna
During hibernation of Syrian hamsters, the core body temperature shows a remarkable decrease, going from 37°C to 4°C. Although this ability to survive at low temperatures could in principle be due to systemic factors that occur during hibernation, we and others have seen that cells from hibernating rodents cultured in vitro maintain this ability. Although others have studied characteristics of cells from hibernating and non-hibernating organisms, the genes and pathways that are involved in cold-induced cell death have not been systematically explored. &#13;
In this thesis, we conduct two genome-wide CRISPR-Cas9 screens in both a cold-sensitive (K562) and cold-resistant (BHK-21) cell line, and uncover GPX4 and related selenocysteine incorporation genes as important for protection against cold-induced cell death. Using genetic knockdowns, along with overexpression of GPX4, we confirm our findings and demonstrate that levels of GPX4 may be limiting in K562 cells, contributing to their cold sensitivity. Additionally, pharmacological validation using inhibitors of GPX4 reveal that the catalytic activity of GPX4 is dependent on the selenocysteine in the active site. Our findings are extended across multiple cell lines and cell types across six species. Taken together, our results suggest that GPX4 may be a powerful and conserved suppressor of cold-induced cell death. &#13;
Building on our initial findings, we go on to show that cold exposure leads to increases in membrane permeability. This membrane permeability is transient, as rewarming of the cells reduces permeability to baseline levels. We also test the role of lipid peroxidation in contributing to membrane permeability and find that although it contributes in some cell lines, it is not the sole contributor as ferroptosis inhibitors do not fully mitigate membrane permeability. We go on to test different membrane channels and do not see decreases in membrane permeability, potentially indicating pathway-independent effects of temperature on membrane permeability. Altogether, this work provides a foundation for understanding how cold exposure influences mammalian cells.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Why Landfills Endure: Quantifying economic barriers to material and energy recovery from municipal solid waste in the United States</title>
<link href="https://hdl.handle.net/1721.1/164491" rel="alternate"/>
<author>
<name>Baidoo, Jacqueline E.</name>
</author>
<id>https://hdl.handle.net/1721.1/164491</id>
<updated>2026-01-13T03:37:18Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Why Landfills Endure: Quantifying economic barriers to material and energy recovery from municipal solid waste in the United States
Baidoo, Jacqueline E.
Municipal solid waste (MSW) is a heterogeneous mixture of materials discarded by residential and nonresidential generators at end-of-life processing facilities for treatment and disposal. Conventional treatment methods reduce waste volumes through recycling via material recovery facilities, energy recovery via municipal solid waste incinerators, and biochemical conversion via composting. Even so, nearly 50% of total MSW generated in the United States was sent to landfills for final disposal in 2018 and almost half of all landfills currently in operation are expected to reach capacity by 2050. Waste planners seek to use developing resource recovery technologies like dry anaerobic digestion, gasification, and pyrolysis to narrow the gaps in end-of-life processing. Such technologies are posited to improve materials circularity and advance zero-waste landfill diversion goals by transforming residuals into electricity, fuels, and precursors to chemicals and fertilizers. However, despite demonstrated improvements to technical inefficiencies in waste valorization, numerous projects built on these technologies have failed to break through to commercial success. We investigate the contribution of regional and economic factors to the success of resource recovery projects through the lens of why landfills remain the predominant method of waste disposal. We build cost models of conventional and select developing treatment methods and use discounted cash flow analysis to estimate financial feasibility by local MSW compositions as reported in regional waste characterization studies.&#13;
&#13;
Findings indicate that the most critical factor to sustainable operation is consistent supply of waste materials at the quality and scale that maximize production efficiency, which is not achievable without rigorous data monitoring of MSW composition. Conversely, dependence on waste volume rather than composition makes land disposal a uniquely flexible pathway capable of subsidizing the costs of resource recovery. Progress towards landfill diversion is economically linked to the opportunity cost of avoiding landfill utilization. Unless municipalities are able to introduce subsidies elsewhere in the waste management ecosystem through gate fees and credits, projects will fail where marginal net costs of diversion exceed the revenues lost from avoided landfilling. Targeted processing of organic wastes can facilitate an average diversion of 24% for the compositions surveyed and was found to be viable for composting and dry anaerobic digestion projects at low to negligible financial losses compared to landfilling.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Enlightening Artificial Intelligence with Science</title>
<link href="https://hdl.handle.net/1721.1/164490" rel="alternate"/>
<author>
<name>Liu, Ziming</name>
</author>
<id>https://hdl.handle.net/1721.1/164490</id>
<updated>2026-01-13T03:37:08Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Enlightening Artificial Intelligence with Science
Liu, Ziming
Today’s artifciail intelligence (AI) systems, while remarkably capable, are largely black boxes. The black-box nature raises concerns for those who build AI – “How can we construct an understand AI in scientifically grounded ways?”, and those who use AI – “How can we trust systems we do not understand?”. This thesis takes a humble step towards addressing the black-box problem. Building white boxes with science (Science for AI): The prevailing paradigm in AI today – “scaling is all you need" – focuses on scaling up existing models. However, this approach often yields systems that are neither interpretable nor efficient. I argue that scientific principles offer fresh perspectives for designing more transparent and effective AI systems. This is demonstrated through Kolmogorov-Arnold Networks (KANs) inspired by mathematics, Poisson Flow Generative Models (PFGM) rooted in physical intuition, and brain-inspired modular training (BIMT) drawing insights from neuroscience, etc. Opening black boxes (Science of AI): Modern AI models exhibit a range of puzzling behaviors – such as grokking, neural scaling laws and emergent representation learning – whose underlying mechanisms remain poorly understood. I employed simplified “spherical cow” models to investigate these phenomena from the perspective of phase transitions. I will show that grokking is a special phase in the hyperparameter space, which can be controlled and eliminated. The learned algorithms after grokking also display distinct phases, called clock or pizza algorithms. AI for Science: With greater interpretability, AI systems can begin to function as “AI Scientists” capable of (re)discovering deep scientific structures from data. These include conservation laws, hidden symmetries, integrable systems, Langrangian and Hamiltonian formulations, modular structures, and high-precion solutions. I believe my research work contributes to the emerging interdiscipinary field that unites AI and Science. Building opon the foundation laid in this thesis, I envision a future in which science guides AI out of its current era of alchemy and into a true era of scientific understanding.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantitative modeling of 5' splice site subclass regulation and evolution</title>
<link href="https://hdl.handle.net/1721.1/164489" rel="alternate"/>
<author>
<name>Kenny, Connor Jens</name>
</author>
<id>https://hdl.handle.net/1721.1/164489</id>
<updated>2026-01-13T03:36:17Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Quantitative modeling of 5' splice site subclass regulation and evolution
Kenny, Connor Jens
Pre-mRNA splicing is an essential molecular process required for eukaryotic gene expression. In this thesis, I present a previously unknown mechanism of splicing regulation where a family of splicing factors, the LUC7 family, compete to differentially impact 5→ splice site (5→ SS) selection in a sequence-dependent manner. I quantitatively characterize two major subclasses of 5→ SS in eukaryotes and outline distinctive features of 5→ SS in exons affected by the three human LUC7 paralogs: LUC7L2 and LUC7L enhance splicing of “right-handed” 5→ SS that exhibit stronger consensus matching on the intron side of the nearly-invariant / GU, while LUC7L3 boosts splicing of “left-handed” 5→ SS with stronger consensus matching upstream of the /GU. Using a range of experimental systems, from human cells to mutant plants, I show that LUC7 paralogs have opposing effects on these two 5→ SS subclasses and that this regulatory mechanism likely originated in the last common ancestor of animals and plants over 1.5 billion years ago. I further evaluate a competing model of 5→ SS subclass regulation involving METTL16- mediated U6 snRNA modification and reconcile both models by devising computational tools that identify sequence features predictive splicing dysregulation in transcriptome-wide datasets. Finally, I examine the evolutionary dynamics of left- and right-handed 5→ SS and propose a model of intron evolution in which codon and intron phase constraints in protein-coding genes shape both minor-to-major intron conversion and transitions between left- and right- 5→ SS subclasses.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Compiler-Hardware Co-Design for Pervasive Parallelization</title>
<link href="https://hdl.handle.net/1721.1/164488" rel="alternate"/>
<author>
<name>Ying, Victor A.</name>
</author>
<id>https://hdl.handle.net/1721.1/164488</id>
<updated>2026-01-13T03:37:12Z</updated>
<published>2023-09-01T00:00:00Z</published>
<summary type="text">Compiler-Hardware Co-Design for Pervasive Parallelization
Ying, Victor A.
Modern computer systems have hundreds of processor cores, so highly parallel programs are critical to achieve high performance. But parallel programming remains difficult on current systems, so many programs are still sequential. This dissertation presents new compilers and hardware architectures that can parallelize complex programs while retaining the simplicity of sequential code. Our new systems allow real-world programs to use hundreds of cores without burdening programmers with concurrency, deadlock, or data races. &#13;
 &#13;
This dissertation follows a novel approach that eliminates the burden of explicit parallel programming to make parallel execution pervasive. This approach relies on four guiding principles. First, exploiting implicit parallelism preserves the simplicity of sequential execution. Second, dividing computation into tiny tasks, as short as tens of instructions each, unlocks plentiful fine-grained parallelism in challenging programs. Hardware-compiler co-design techniques can create many tasks in parallel and reduce per-task overheads to make tiny tasks scale to many cores. Third, new hardware and software mechanisms can compose parallelism across entire programs, removing serializing barriers to overlap executions of nested parallel subroutines. Finally, exploiting static and dynamic information for data locality reduces data movement costs while maintaining load balance on large multicore systems. &#13;
 &#13;
This dissertation presents three systems that embody these four principles. First, T4 introduces automatic program transformations that exploit a novel hardware architecture to parallelize sequential programs. As a result, T4 scales hard-to-parallelize real-world programs to tens of cores, resulting in order-of-magnitude speedups. Second, S5 builds on T4 with novel transformations to remove needless serialization in a broad class of challenging data structures. Thus, S5 scales complex real-world programs to hundreds of cores, delivers additional order-of-magnitude speedups over T4, and outperforms manually parallelized code tuned by experts. Finally, ASH is an accelerator that demonstrates the same approach can be applied with simpler mechanisms tailored for digital circuit simulation. A small ASH implementation is 32x faster than a large multicore CPU running a state-of-the-art parallel simulator.
</summary>
<dc:date>2023-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimizing Graph Neural Network Training on Large Graphs in A Distributed Setting</title>
<link href="https://hdl.handle.net/1721.1/164487" rel="alternate"/>
<author>
<name>Murzynowski, Philip</name>
</author>
<id>https://hdl.handle.net/1721.1/164487</id>
<updated>2026-01-13T04:08:27Z</updated>
<published>2022-09-01T00:00:00Z</published>
<summary type="text">Optimizing Graph Neural Network Training on Large Graphs in A Distributed Setting
Murzynowski, Philip
Graph neural networks (GNNs) are an important class of methods for leveraging the information present in graph structures to perform various learning tasks. Distributed GNNs can improve the performance of GNN execution by dividing computation among multiple machines and scale to large graphs by partitioning graph features and the graph structure. Although distributed GNNs are able to achieve self-relative speedup, they are often slower than well-optimized code running on a single machine. For example, evaluation of the prevalent Distributed DGL system on graphs in the Open Graph Benchmark shows Distributed DGL can achieve speedup of over 2× when moving from one to four nodes, but execution of Distributed DGL on 4 nodes is 2× slower than a well-optimized GNN system, such as the SALIENT system, on a single machine.&#13;
&#13;
In my thesis, I argue that it is possible for a distributed GNN system to be both fast and scalable. Specifically, I show that it is possible to match the performance of well-optimized, non-distributed codes for GNN training and also achieve good scalability when running in the distributed setting. I present a system called Distributed SALIENT and motivate its design through profiling and identifying bottlenecks that arise in the distributed setting. Key components of Distributed SALIENT include the use of well-optimized code for local computations, pipelining of inter-machine communication, and a careful trade-off between data partitioning and partial replication.&#13;
&#13;
I evaluate Distributed SALIENT on the Open Graph Benchmark (OGB) and show that Distributed SALIENT achieves good speedup compared to SALIENT’s well-optimized single-node code while only using replication factors of roughly 5%. In fact, in experiments with training a 3-layer GraphSAGE model on the large OGB papers100M data set, Distributed SALIENT on 8 nodes is 8.6x faster than SALIENT on 1 node.
</summary>
<dc:date>2022-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Atomistic Insights into Alloy Solidification using&#13;
Machine-Learning Potentials</title>
<link href="https://hdl.handle.net/1721.1/164486" rel="alternate"/>
<author>
<name>Cao, Yifan</name>
</author>
<id>https://hdl.handle.net/1721.1/164486</id>
<updated>2026-01-13T03:35:39Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Atomistic Insights into Alloy Solidification using&#13;
Machine-Learning Potentials
Cao, Yifan
Alloy solidification is a critical process in materials design and manufacturing, as it governs the formation of microstructures that determines the mechanical, thermal, and chemical properties of materials. However, direct in situ observation remains extremely challenging due the need for high spatial and temporal resolution under elevated temperatures. On the theory side, solidification is a complex phenomenon often studied using phase-field simulations, which rely on empirically fitted parameters and simplified assumptions about interfacial kinetics, limiting their predictive capability. Capturing this process at the atomistic level can yield more fundamental insights, but is hindered by the need for interatomic models that are both accurate and computationally efficient across relevant timescales and length scales. To overcome these challenges, this thesis develops and applies machine-learning interatomic potentials (MLPs) that capture the chemical complexity of metallic alloys, providing a physically accurate and computationally efficient backbone for large-scale atomistic simulations of complex alloy solidification. We first address a foundational challenge in deploying MLPs: the systematic construction of robust and transferable training datasets. Using CrCoNi as a model system, we evaluate various strategies for training MLPs to capture chemical short-range order (SRO), a critical feature in high-entropy alloys, and its effects on materials quantities of relevance for mechanical properties, such as stacking-fault energy and phase stability. It is demonstrated that energy accuracy on test sets often does not correlate with accuracy in capturing material properties, which is fundamental in enabling large-scale atomistic simulations of metallic alloys with high physical fidelity. Based on this analysis we systematically derive design principles for the rational construction of MLPs that capture SRO in the crystal and liquid phases of alloys. The resulting MLPs are validated against experimental measurements on key thermophysical properties, including melting points, heat capacities, thermal expansion coefficients, and enthalpy of SRO formation, confirming their suitability for predictive simulations. With these validated potentials, we then investigate the evolution of SRO during rapid solidification processes. Our simulations reveal that alloy processing can lead to nonequilibrium steady states of SRO that differ qualitatively from any equilibrium configuration. We attribute this behavior to an inherent ordering bias introduced by nonequilibrium dynamics during solidification. These findings suggest that conventional manufacturing processes offer new opportunities to tailor alloy properties by accessing a broader spectrum of nonequilibrium SRO states, expanding the alloy design space beyond the equilibrium spectrum. Finally, we conduct predictive solidification simulations of chemically complex alloys across experimentally relevant growth rates (0.15–2 m/s) , alloy compositions, interface orientations, and undercooling levels. These simulations capture the dynamic build up of solute partitioning at the solid-liquid interface and reveal kinetics-dependent segregation patterns that deviate markedly from equilibrium predictions. The developed framework enables direct evaluation of key kinetic properties under realistic growth conditions, including interface mobility, liquid diffusivity, and solute trapping. Altogether, this thesis develops machine-learning potentials capable of capturing the chemical complexity of metallic alloys with near DFT-level accuracy, and establishes a framework for extracting key kinetic properties through predictive simulations of alloy solidification. When combined with emerging advances in continuum-scale modeling, these results lay the groundwork for truly multiscale investigations of alloy solidification, enabling DFT-level predictive capabilities at scales directly comparable to experimental alloy design and additive manufacturing processes.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sequential Resource Allocation and Applications in Revenue Management</title>
<link href="https://hdl.handle.net/1721.1/164485" rel="alternate"/>
<author>
<name>Zhou, Zijie</name>
</author>
<id>https://hdl.handle.net/1721.1/164485</id>
<updated>2026-01-13T03:36:41Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Sequential Resource Allocation and Applications in Revenue Management
Zhou, Zijie
Sequential resource allocation is a fundamental problem in operations research, encompassing a wide range of applications where decisions must be made dynamically under uncertainty. This thesis develops new theoretical foundations, explores practical applications, and establishes evaluation methodologies for sequential resource allocation, with a focus on revenue management, robustness and fairness, and experiment design. On the theoretical side, this thesis advances the study of classical network revenue management, a long-standing challenge in dynamic resource allocation. We introduce the first LP-free algorithm, improving the regret bound from O(T ^1/2) to O(T ^3/8)—a significant step toward closing the gap between existing algorithms and the theoretical lower bound of O(1). Additionally, we enhance robustness in sequential resource allocation by developing algorithms that incorporate machine-learned advice, striking a balance between overly conservative worst-case models and overly optimistic stochastic assumptions. Furthermore, we integrate individual fairness into sequential decision-making, ensuring equitable resource allocation without compromising competitive performance. On the application side, we demonstrate the impact of sequential resource allocation in the hospitality management domain. Collaborated with Oracle Lab, we design an online upgrading mechanism that enables hotels to dynamically determine when and at what price to offer room upgrades. Additionally, we propose near-optimal, fast approximation algorithms for this mechanism, achieving a regret bound of O(logT), which is close to the natural lower bound of O(1). We also incorporate our upgrading algorithm to a hotel dataset, and improves more than 20% revenue in 2022. Finally, we introduce new methodologies for evaluating sequential decision-making policies, with a focus on online experiment design. Traditional A/B testing methods struggle with dynamically arriving data, leading to biased or inefficient experimental results. Our pigeonhole experimental design effectively reduces bias and outperforms several well-known experimental design policies, including matched pair design and completely randomized design, making it a more reliable approach for evaluating sequential decision-making strategies. By unifying theoretical insights, real-world applications, and online evaluation frameworks, this thesis contributes to the broader field of sequential resource allocation, providing fundamental advancements with practical implications across revenue management and experimental design.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Aspects of Moiré Quantum Matter</title>
<link href="https://hdl.handle.net/1721.1/164484" rel="alternate"/>
<author>
<name>Paul, Nisarga</name>
</author>
<id>https://hdl.handle.net/1721.1/164484</id>
<updated>2026-01-13T03:36:10Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Aspects of Moiré Quantum Matter
Paul, Nisarga
The advent of moiré quantum matter has newly unified disparate themes in modern condensed matter physics, chief among them band theory, correlations, and topology. This thesis investigates how the interplay between these foundational elements leads to novel electronic phenomena uniquely enabled by moiré superlattices. We focus on modulated Landau levels, which is one of the simplest settings with all three of band dispersion, correlations and topology, yet is rich enough to capture much of the interesting phenomena of moiré quantum matter. We characterize emergent quantum phases that are newly unlocked by the moiré regime. Specifically, we discuss directional localization, formation of Hall crystals with tunable Chern numbers, and novel fractional Chern insulator collective mode physics in the context of modulated Landau levels. We also show that a class of models comprising itinerant electrons strongly coupled to skyrmion-like magnetic textures, closely connected with moiré transition metal dichalcogenides in which the fractional quantum anomalous Hall effect was observed, can host flat Chern bands, emergent Landau levels, and zero-field non-Abelian topological order. This thesis provides a framework for the study of the essential features of moiré quantum matter and demonstrates how moiré systems provide unprecedented opportunities to explore, design, and manipulate strongly correlated topological quantum matter.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>An Optimized Bayesian Analysis Framework for the KATRIN Experiment</title>
<link href="https://hdl.handle.net/1721.1/164483" rel="alternate"/>
<author>
<name>Xu, Weiran</name>
</author>
<id>https://hdl.handle.net/1721.1/164483</id>
<updated>2026-01-13T03:35:29Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">An Optimized Bayesian Analysis Framework for the KATRIN Experiment
Xu, Weiran
Neutrinos, which were originally predicted to be massless within the Standard Model of particle physics, have been confirmed to possess non-zero masses through the discovery of neutrino flavor oscillations. These oscillations precisely measure mass-squared splittings between neutrino mass eigenstates, establishing lower limits for the effective electron-neutrino mass at 0.009 eV for normal mass ordering and 0.050 eV for inverted mass ordering. However, the absolute neutrino mass scale remains a fundamental open question in both particle physics and cosmology.&#13;
&#13;
Precise spectroscopy of beta-decay spectrum provides a model-independent probe of the absolute neutrino mass via decay kinematics. The KArlsruhe TRItium Neutrino (KATRIN) experiment, utilizing a Magnetic Adiabatic Collimation and Electrostatic (MAC-E) filter spectrometer, sets the world's tightest upper limit of m_v &lt; 0.45 eV (90% C.L.) based on its first five measurement campaigns. KATRIN is scheduled to complete its 1,000-day data-taking period by the end of 2025, targeting a final sensitivity of m_v &lt; 0.3 eV}. Future improvements on neutrino mass measurements will depend on advances in differential detection techniques and the development of atomic tritium sources.&#13;
&#13;
This thesis presents an optimized modeling of the KATRIN beta spectrum and a comprehensive analysis of the first five measurement campaigns. An improved framework for computing the theoretical beta spectrum and the KATRIN response function is developed to address the complexities arising from the asymmetric field configurations in the main spectrometer. Benefiting from a computational speedup of four orders of magnitude and improved numerical stability, frequentist best-fit values for individual campaigns are reported, together with an upper limit on neutrino mass using the Lokhov-Tkachov confidence belt construction method.&#13;
&#13;
Parallel Bayesian analyses are conducted on the same dataset, yielding an independent and complementary statistical interpretation of the experimental results. Posterior distributions for the squared neutrino mass are sampled for each campaign under a flat prior on m²ᵥ using the parallel Stretch-Move algorithm, and are subsequently combined with a novel approach developed in this work to enhance computational efficiency. Convergence of each Markov chain is assessed through autocorrelation time analysis, and the robustness of the results is validated through cross-team comparison and consistency checks with profile likelihood. The Bayesian results reported here enable straightforward integration with constraints from oscillation measurements and cosmological observations, and the methodologies developed in this work are directly applicable to the final KATRIN dataset, providing a foundation for future neutrino mass analyses and searches for physics beyond the Standard Model.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Redox-Mediated Processes Toward Modular Electrochemical Systems</title>
<link href="https://hdl.handle.net/1721.1/164482" rel="alternate"/>
<author>
<name>Mallia, Christopher T.</name>
</author>
<id>https://hdl.handle.net/1721.1/164482</id>
<updated>2026-01-13T03:36:30Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Redox-Mediated Processes Toward Modular Electrochemical Systems
Mallia, Christopher T.
Electrochemical technologies offer an attractive path toward a sustainable future where conventional methods of storing energy or producing critical materials are increasingly coupled to renewable electricity generation. To enable such a future, it is imperative that we have strong foundational understanding of electrochemical reactions that are useful to our needs. Redox flow batteries (RFBs) have emerged as a promising architecture for large scale storage of electricity to bridge the gap when renewable generation is unavailable. These devices operate by storing charge in the form of redox-active species that are dissolved into an electrolyte, and subsequently passed through an electrochemical cell to either store or release electrical energy. An extension of the concept of RFBs toward more general applications is to use the dissolved redox-active species to drive a reaction with another material, either to increase the energy storage density through an electrochemically active charge-dense material, or to drive a useful chemical reaction. This extension is termed a redox-mediated (RM) process, and inherits many of the complexities and intricacies of conventional electrochemical technologies, specifically that of RFB-type devices. The subject of this thesis is the development of knowledge and techniques for studying RM processes toward practical embodiments. While technical implementations of this concept are still nascent, many promising early results have been found in devices that use redox-mediated reactions to store electricity. Despite this, progress is frequently hindered by a lack of foundational knowledge from which to ideate better systems, and techniques to experimentally determine underlying physics. First, I establish the development of the RM concept over the past years as primarily through proof-of-concept electrochemical reactors which mimic RFBs. Second, we establish that the underlying nature of some RM reactions can be quantified and understood through corrosion principles, which guide our intuition for selecting chemistries and operating conditions. Third, I demonstrate that the behavior of many desirable RM chemistries is intrinsically coupled to passivation phenomena, and that this must be accounted for in reaction design. Fourth and finally, I provide experimental and practical guidance for researchers in this field, coupled with the design of some apparatus and techniques useful for characterizing RM reactions in specific and electrochemical processes in general. This body of work is broadly intended to advance understanding of electrochemically active interfaces and enable technology concepts which promote a sustainable future.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Predictive Modeling of Chemical Reactivity for Sustainability</title>
<link href="https://hdl.handle.net/1721.1/164481" rel="alternate"/>
<author>
<name>Singhal, Avni Priya</name>
</author>
<id>https://hdl.handle.net/1721.1/164481</id>
<updated>2026-01-13T03:35:43Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Predictive Modeling of Chemical Reactivity for Sustainability
Singhal, Avni Priya
Predicting and controlling chemical reactivity is key to sustainable material and process design. However, modeling reactivity at scale remains challenging due to the computational demands of quantum chemical methods and the complexity of reaction mechanisms. This thesis explores how high-throughput computational approaches, rooted in quantum chemistry and enabled by automation, can be used to interrogate reactivity across large chemical spaces. We focus on two domains where reactivity governs process efficiency and sustainability: solvent-based carbon capture and polymer, specifically thermoset, manufacturing.&#13;
&#13;
We first investigate pi-conjugated heterocyclic nucleophiles as alternative carbon capture solvents to address the high regeneration energy and degradation rates of conventional amine-based systems. We combine synthetic template-based library enumeration, density functional theory (DFT), and machine learning models to evaluate binding energies, capture capacity, regeneration thermodynamics, and oxidative stability. Structure–property analysis reveals design strategies to enhance capture strength while balancing tradeoffs with desorption temperature and degradation resistance.&#13;
&#13;
We next focus on designing monomers for frontal ring-opening metathesis polymerization (FROMP), a polymerization mode that enables rapid, energy-efficient manufacturing of polymers. This self-propagating process harnesses exothermic reactions to sustain a polymerization front without continuous external heating, but it requires monomers with a finely tuned balance of thermodynamic and kinetic parameters. We develop a multi-level screening pipeline that integrates DFT-calculated properties with a reaction-diffusion model to predict front behavior directly from the atomistic structure of the monomer. We experimentally validate a preliminary pipeline, identifying a new class of FROMP-capable furan-benzyne monomers, and uncover additional candidates from unexplored chemical spaces that overcome limitations of known systems. &#13;
&#13;
Together, these studies demonstrate how high-throughput, mechanism-informed modeling can guide the discovery of molecules and materials that meet complex reactivity and performance criteria.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>When Your Home Becomes a Panda Park: The Opportunity and Upheaval of China's Giant Panda National Park</title>
<link href="https://hdl.handle.net/1721.1/164480" rel="alternate"/>
<author>
<name>Zhao, Celina</name>
</author>
<id>https://hdl.handle.net/1721.1/164480</id>
<updated>2026-01-13T04:08:22Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">When Your Home Becomes a Panda Park: The Opportunity and Upheaval of China's Giant Panda National Park
Zhao, Celina
In December 2016, China launched the Giant Panda National Park (GPNP). A massive ecological initiative aimed at safeguarding its beloved national symbol and international icon of conservation, the park marked an unequivocal win for giant pandas. But for the 100,000 people already living in and around the borders, the outcome was not as clear. &#13;
The GPNP seeks to establish a harmonious balance between biodiversity protection and human development. But the vast amount of land covered by the park means not all places are equally primed to achieve that goal. A handful of communities have been designated as exclusive entrance communities, with lavish funding to become the face of the national park. In others, a persistent question simmers: Are pandas more important than people? &#13;
Central to this story is how individuals are adapting to and reimagining their futures. Rather than a binary of winners and losers, the GPNP has sparked a wide range of human responses -showing that the path to a sustainable future between people and pandas is far from black and white.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Sequence Landscape of Bacterial Genes is Shaped by Long-Range mRNA Folding</title>
<link href="https://hdl.handle.net/1721.1/164479" rel="alternate"/>
<author>
<name>Gill, Manraj Singh</name>
</author>
<id>https://hdl.handle.net/1721.1/164479</id>
<updated>2026-01-13T03:36:07Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">The Sequence Landscape of Bacterial Genes is Shaped by Long-Range mRNA Folding
Gill, Manraj Singh
An evolutionary selection for optimal expression of genes in regulatory networks has led to discernable sequence patterns in bacterial genomes observed in nature. Such patterns result from gene regulatory strategies that leverage sequence-dependent interactions with key cellular machineries and regulatory molecules. While numerous regulatory strategies that shape bacterial gene sequence have been characterized, predicting functional consequences from sequence alone remains challenging due to the sheer vastness of the possible sequence space. Moreover, the primary gene sequence encodes information on secondary and tertiary topologies that the molecules of the central dogma can fold into. Specifically, though local messenger RNA (mRNA) structures are known to regulate bacterial gene expression, the role of long-range mRNA folding remains unclear despite the predicted prevalence of such interactions across mRNAs. In bacteria, a major regulator of mRNA decay and translation rates is accessibility of the ribosome binding site (RBS) to the ribosome. Sequences in the mRNA’s 5´ untranslated region (UTR) complementary to the RBS can decrease gene expression by base pairing and occluding ribosomes from binding. To determine whether such antagonistic sequences are also the primary determinants of sequence choice along the rest of the mRNA transcript, we measured the effect of all possible 8-nucleotide substitutions (65,536 variants) on mRNA levels when placed in multiple positions along a bacterial transcript. We find that, while the vast majority of substitutions in the middle of genes negligibly affect RNA level, 8mers with complementarity to parts of the RBS exhibit the strongest effects by increasing RNA degradation rates up to 4-fold. RBS-complementary sequences also decrease translation initiation rates when placed in a coding sequence, and are able to occlude ribosome binding even when they are located hundreds of nucleotides away from the start codon. The inhibitory effect of such secondary structures on gene expression likely explains a strong selection against sequences complementary to conserved parts of RBSs throughout coding sequences of genes from diverse bacterial genomes, which we uncover through computational analysis. Together, this thesis reveals the widespread impact of RNA intramolecular interactions in vivo on both mRNA stability and translation and uncovers a key constraint on gene sequences.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Engineering Materials for Non-Compressible Torso Hemorrhage and Internal Bleeding</title>
<link href="https://hdl.handle.net/1721.1/164478" rel="alternate"/>
<author>
<name>Hong, Celestine Jia Huey</name>
</author>
<id>https://hdl.handle.net/1721.1/164478</id>
<updated>2026-01-13T03:35:37Z</updated>
<published>2022-05-01T00:00:00Z</published>
<summary type="text">Engineering Materials for Non-Compressible Torso Hemorrhage and Internal Bleeding
Hong, Celestine Jia Huey
Non-compressible torso hemorrhage (NCTH) and internal bleeding results in a significant number of preventable casualties worldwide among civilians and in the field. In particular, internal bleeding can only be diagnosed through changes in vital signs and then through imaging modalities that may only be available in a hospital setting. Over the past few decades, researchers in the field have sought to address these needs by developing hemostats that can rapidly expand, bind, or seal an exposed wound, or interact with wound-specific components when delivered intravenously to enhance preexisting hemostatic processes.&#13;
&#13;
The first part of this thesis investigates the effect of hemostatic nanoparticle size on their interactions with platelets. Small nanoparticles were observed to result in an increased percentage of specifically-bound single platelets under flow and intermediate nanoparticles were observed to result in the greatest degree of platelet recruitment to a platelet-collagen surface. Large nanoparticles were observed to result in the most nanoparticle mass bound to a surface, the shortest circulation time and retention, and the highest pulmonary accumulation. Ultimately, intermediate nanoparticles were shown to result in the most significant increase in survival relative to the saline control in a lethal inferior vena cava (IVC) injury model (84.6% vs 26.7%), as well as the greatest accumulation at the injured IVC relative to uninjured vessel controls. &#13;
&#13;
Subsequently, the intermediate nanoparticles from the prior study were functionalized with bio-orthogonal click-crosslinkable azide groups to achieve targeted crosslinking behavior. Commercial multiarm PEG functionalized with the corresponding clickable moiety, dibenzylcyclooctyne (DBCO), and DBCO-PEG-b-PLGA nanoparticles were delivered as the second part of this two-component system. This system was demonstrated to increase platelet recruitment, and  decrease fibrin loss during plasminolysis in vitro. When challenged in a mouse liver resection model, the two-component system resulted in significantly increased survival relative to the nanoparticle-only system and higher accumulation in the remnant liver. &#13;
&#13;
Finally, a charge-inverting polymer was synthesized through controlled radical polymerization. The material was demonstrated to undergo rapid charge inversion when exposed to physiological pH, resulting in the near-complete lift-off within a minute of a layer-by-layer drug film into the dermis when coated on microneedles. This versatile release platform could be coated on wound dressings to facilitate the release of therapeutics to aid in healing, or other applications involving charged films. &#13;
&#13;
In sum, this thesis has investigated several new materials and assays for the treatment of traumatic hemorrhage, opening potential avenues for the development of more effective hemostats.
</summary>
<dc:date>2022-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Advances in Nonconvex and Robust Optimization</title>
<link href="https://hdl.handle.net/1721.1/164477" rel="alternate"/>
<author>
<name>Koukouvinos, Theodoros</name>
</author>
<id>https://hdl.handle.net/1721.1/164477</id>
<updated>2026-01-13T03:35:24Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Advances in Nonconvex and Robust Optimization
Koukouvinos, Theodoros
Nonconvex optimization presents significant challenges, as identifying the global optimum is often difficult. This thesis introduces novel algorithms to find the exact solution of a broad class of nonconvex optimization problems. The thesis is structured into four parts. In Chapter 2, we propose a novel method for solving nonconvex optimization problems, in which the nonconvex components are sums of linear times convex (SLC) functions. We introduce a new technique, called the Reformulation-Perspectification Technique (RPT), to obtain a convex approximation of the original nonconvex optimization problem. We then incorporate RPT within branch and bound to obtain the global optimal solution of the nonconvex optimization problem. By using the RPT, we obtain a convex relaxation by forming the perspective of each convex function and linearizing all product terms with newly introduced variables. To further tighten the approximation, we pairwise multiply constraints. Therefore, in Chapter 3, we analyze all possibilities of multiplying conic constraints, a very wide class of constraints. Further, we delineate methods for deriving new, valid linear and second-order cone inequalities for pairwise constraint multiplications involving the power cone and exponential cone, thereby enhancing the strength of the approximation. In Chapter 4, we address nonconvex optimization problems that involve polynomials. We derive valid SLC decompositions for polynomials, in which the linear functions are inequalities of the feasible region and the convex functions are quadratics. We prove the existence of such SLC decompositions for arbitrary degree polynomials. Further, out of the many possible SLC decompositions, we obtain the one that results in the tightest lower bound. Finally, in the numerical experiments we show that our method often outperforms state-of-the-art approaches for polynomial optimization. In Chapter 5, we propose a robust optimization framework that immunizes some of the central linear algebra problems in the presence of data uncertainty. Namely, we formulate linear systems, matrix inversion, eigenvalues-eigenvectors and matrix factorization under uncertainty, as robust optimization problems using appropriate descriptions of uncertainty. We show that for both linear systems and matrix inversion, the robust approach leads to more accurate solutions than the nominal, in the case of nearly singular matrices.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fabricating and Tailoring Halide Perovskites for Photovoltaic Applications</title>
<link href="https://hdl.handle.net/1721.1/164476" rel="alternate"/>
<author>
<name>Kadosh Zhitomirsky, Tamar</name>
</author>
<id>https://hdl.handle.net/1721.1/164476</id>
<updated>2026-01-13T03:36:12Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Fabricating and Tailoring Halide Perovskites for Photovoltaic Applications
Kadosh Zhitomirsky, Tamar
Green energy is a contemporary global concern, and research of materials for solar energy harvesting is the heart of potential solutions for the energy crisis. Halide perovskites are leading candidates to replace silicon in next generation solar cells. This thesis focuses on halide perovskite materials, aiming to understand their structure, electronic and ionic properties and photo-activity; and to re-direct their fabrication techniques to address global market needs and requirements. In this work we developed alternative, vapor-based fabrication techniques, based on manufacturing-compatible, safe, rapid and scalable processes, that have the potential to improve material stability and efficiency.&#13;
Vapor Transport Deposition (VTD) is investigated as a promising fabrication method for thin film halide perovskites and beyond. We explored the deposition parameter space and elucidated relationships and trends regarding composition, structure and deposition rate. We examined the morphology, crystal phase formation, optical and electrical properties, and finally the performance of the deposited films when incorporated into solar cells.&#13;
We begin by exemplifying the viability of vapor transport co-deposition in fabricating active perovskite films, utilizing methylammonium lead iodide (MAPbI3) as a simplified model system. We then design an improved version of the vapor transport deposition system and transition to the more technologically attractive perovskite composition formamidinium lead iodide (FAPbI3). Learning from previous attempts to fabricate this material, we developed a novel technique that we call Hybrid two-step vapor-solution deposition in which we use VTD to deposit the inorganic&#13;
4&#13;
precursor, not readily dissolved in industry acceptable solvents, and then react it with a solution of the organic precursors dissolved in a benign solvent. This technique allowed us to fabricate functioning FAPbI3 based solar cell devices, in a safe, fast-paced, scalable and manufacturing compatible fashion. The deposition rate is significantly influenced by chamber pressure and source temperature, and by controlling all deposition parameters, we systematically reached rates of up to 1200 nm/min, that is orders of magnitude faster than current comparable techniques. We found the technique to be reproducible, yielding 13% efficient devices, with champion efficiencies of up to 15.3%. Based on the proposed novel fabrication process, we believe it offers an avenue for further improvement in solar cell stability and efficiency.&#13;
CsPbBr3, a fully inorganic halide perovskite, also shows great promise as a photo and gamma ray detector and like the other halide perovskites is known to support halide ion conductivity that contributes to device instability and reduced sensitivity to irradiation. We choose this as a model system to apply concepts from defect chemistry and demonstrate the ability to measure and manipulate the ionic conductivity in the material by stoichiometry control and doping.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Membrane protein conformational dynamics and ligand-binding interactions in bacterial glycoconjugate biosynthesis</title>
<link href="https://hdl.handle.net/1721.1/164475" rel="alternate"/>
<author>
<name>Higinbotham, Hugh</name>
</author>
<id>https://hdl.handle.net/1721.1/164475</id>
<updated>2026-01-13T03:35:41Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Membrane protein conformational dynamics and ligand-binding interactions in bacterial glycoconjugate biosynthesis
Higinbotham, Hugh
Membrane associated proteins are an essential component of the complex biochemistry that is carried out at the membrane interface and perform essential functions for cellular life. Biophysical characterization of protein structure-function relationships faces a unique set of challenges due to the constraints of phospholipid bilayer chemistry and geometry. Advances in x-ray crystallography and cryo electron microscopy have made progress in this regard, but dynamic structural features remain difficult to study. Small membrane proteins, such as those responsible for bacterial glycosylation, remain challenging to structurally characterize at all. Bacterial glycan synthesis pathways are essential for cell function yet highly variable between strains, making them promising systems for targeted antibiotic development. Many pathways have initiating SmPGTs that show incredible specificity for minute changes in glycan chemistry despite being small enough to streamline many computational methods, which makes them ideal model systems for developing multidisciplinary strategies to study membrane protein dynamics. This thesis presents a strategy that employs structural bioinformatics in Chapter 2, molecular dynamics simulation (MD) in Chapter 3, and single-molecule FRET microscopy (smFRET) in Chapter 4 to observe the ligand-dependent conformational dynamics of integral membrane proteins in situ. It focuses on representative members of the small monotopic phosphoglycosyl transferase (SmPGT) superfamily, which catalyze transfer of a phosphosugar from a soluble nucleotide-sugar donor to a membrane-embedded polyprenol phosphate acceptor in the initiating step of glycoconjugate biosynthesis in prokaryotes. The pipeline is employed to confirm the role of SmPGT conformational dynamics in substrate binding and informs the design of non-hydrolyzable substratemimetic inhibitors. Chapter 5 further sets the stage for the use of structural bioinformatics and molecular simulation to characterize subsequent glycosyl transferase (GT) enzymes down pathway and presents initial results characterizing inter-protein cooperative interactions. The integrated approach to incorporate computational and experimental characterization methods has significantly contributed to the understanding of SmPGT structure-function relationships and opened up new directions of inquiry into specific PGTligand interactions, the development of new inhibitory compounds, and the role of interprotein interactions in bacterial glycan synthesis.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Functional Genomic and Image-Based Screening Approaches for Probing Host-Pathogen Interactions</title>
<link href="https://hdl.handle.net/1721.1/164474" rel="alternate"/>
<author>
<name>Carlson, Rebecca J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164474</id>
<updated>2026-01-13T03:35:32Z</updated>
<published>2023-06-01T00:00:00Z</published>
<summary type="text">Functional Genomic and Image-Based Screening Approaches for Probing Host-Pathogen Interactions
Carlson, Rebecca J.
Host-pathogen interactions represent a complex interplay between hosts and pathogens that can evolve over millions of years. Interactions between bacteria or viruses and human cells, and the resulting evolved antipathogenic signaling pathways, are processes responsible for pathologies ranging from infectious diseases to autoimmune conditions and cancer. In addition, engineered designs inspired by pathogen interactions with hosts are increasingly being used to both treat and diagnose many pathologies that need not originate from infection with a pathogen. Therefore, it is critical to build and deploy scalable tools to better understand host-pathogen dynamics in order to both better treat conditions where pathogens or antipathogenic signaling contribute directly to disease pathology as well as to engineer new treatments to address a broader range of disease states.&#13;
&#13;
In this thesis, I describe approaches to leverage functional genomics and image-based screening to perturb and profile host-pathogen interactions, including responses to two RNA viruses, Sendai virus and Ebola virus. These provide case studies highlighting the utility of high-content image-based screening for revealing new genes regulating predefined phenotypes of interest as well as for generating single-cell imaging profiles that can be used to infer new genetic functions and phenotypic states directly from screening data without a priori specification. I also highlight an example of a genetic screen that revealed a robust negative result, leading to hypothesis and validation of a novel function of the STING protein as a proton channel.
</summary>
<dc:date>2023-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurement of the B0 → ρ(770)0γ branching fraction</title>
<link href="https://hdl.handle.net/1721.1/164473" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164473</id>
<updated>2026-04-14T03:38:19Z</updated>
<published>2025-12-19T00:00:00Z</published>
<summary type="text">Measurement of the B0 → ρ(770)0γ branching fraction
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.
The ratio between the branching fractions of the B0 → ρ(770)0γ and B0 → K*(892)0γ decays is measured with proton-proton collision data collected by the LHCb experiment at centre-of-mass energies of 7, 8, and 13 TeV, corresponding to an integrated luminosity of 9 fb−1. The measured value is B B 0 → ρ 770 0 γ B B 0 → K ∗ 892 0 γ = 0.0189 ± 0.0007 ± 0.0005 , where the first uncertainty is statistical and the second systematic. The branching fraction for B0 → ρ(770)0γ decays is hence obtained as B B 0 → ρ 770 0 γ = 7.9 ± 0.3 ± 0.2 ± 0.2 × 10 − 7 , where the last uncertainty is due to the branching fraction of the normalisation mode. This result assumes that both the ρ(770)0 and K*(892)0 decays saturate the dihadron mass spectra considered in the analysis. It is consistent with the current world-average value and by far the most precise measurement to date.
</summary>
<dc:date>2025-12-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Beamdump facility at Jefferson Lab</title>
<link href="https://hdl.handle.net/1721.1/164472" rel="alternate"/>
<author>
<name>Achenbach, Patrick</name>
</author>
<author>
<name>Afanasev, Andrei</name>
</author>
<author>
<name>Ambrozewicz, Pawel</name>
</author>
<author>
<name>Ashkenazi, Adi</name>
</author>
<author>
<name>Banerjee, Dipanwita</name>
</author>
<author>
<name>Battaglieri, Marco</name>
</author>
<author>
<name>Benesch, Jay</name>
</author>
<author>
<name>Bondí, Mariangela</name>
</author>
<author>
<name>Brindza, Paul</name>
</author>
<author>
<name>Camsonne, Alexandre</name>
</author>
<author>
<name>Christy, Eric M.</name>
</author>
<author>
<name>Cline, Ethan W.</name>
</author>
<author>
<name>Cuevas, Chris</name>
</author>
<author>
<name>Dilling, Jens</name>
</author>
<author>
<name>Doria, Luca</name>
</author>
<author>
<name>Fegan, Stuart</name>
</author>
<author>
<name>Filippini, Marco</name>
</author>
<author>
<name>Fulci, Antonino</name>
</author>
<author>
<name>Giovannella, Simona</name>
</author>
<author>
<name>Grazzi, Stefano</name>
</author>
<id>https://hdl.handle.net/1721.1/164472</id>
<updated>2026-04-14T03:38:18Z</updated>
<published>2025-12-24T00:00:00Z</published>
<summary type="text">A Beamdump facility at Jefferson Lab
Achenbach, Patrick; Afanasev, Andrei; Ambrozewicz, Pawel; Ashkenazi, Adi; Banerjee, Dipanwita; Battaglieri, Marco; Benesch, Jay; Bondí, Mariangela; Brindza, Paul; Camsonne, Alexandre; Christy, Eric M.; Cline, Ethan W.; Cuevas, Chris; Dilling, Jens; Doria, Luca; Fegan, Stuart; Filippini, Marco; Fulci, Antonino; Giovannella, Simona; Grazzi, Stefano
The potential of the intense secondary muon, neutrino, and (hypothetical) light dark matter beams at the Thomas Jefferson National Accelerator Facility (Jefferson Lab) is explored. These are produced in the high-power dumps with high-current electron beams. Light dark matter searches with the approved Beam Dump eXperiment (BDX) are driving the realization of a new underground vault behind Hall A that could be extended to a Beamdump Facility with little additional installations. High-energy muons created via the Bethe–Heitler process uniquely do not proceed through the more common pion production and decay channels. Several possible muon physics applications are highlighted. Neutrino detector technologies and experiments suitable for a beamdump facility are outlined.
</summary>
<dc:date>2025-12-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Linking Chemical Phase and Mechanical Properties to Evaluate the Use of Millimeter-Wave Induced Vitrified Basalt in Enhanced Geothermal Systems</title>
<link href="https://hdl.handle.net/1721.1/164471" rel="alternate"/>
<author>
<name>Meltzer, Eve R.</name>
</author>
<author>
<name>Stefaniuk, Damian</name>
</author>
<author>
<name>Einstein, Herbert H.</name>
</author>
<id>https://hdl.handle.net/1721.1/164471</id>
<updated>2026-01-10T03:08:21Z</updated>
<published>2025-12-22T00:00:00Z</published>
<summary type="text">Linking Chemical Phase and Mechanical Properties to Evaluate the Use of Millimeter-Wave Induced Vitrified Basalt in Enhanced Geothermal Systems
Meltzer, Eve R.; Stefaniuk, Damian; Einstein, Herbert H.
Extraction of geothermal energy from Earth’s heat could significantly contribute to long-term energy needs, yet the current geothermal drilling process faces significant technical limitations. A promising advancement in enhanced geothermal systems is the use of a millimeter-wave (MMW) gyrotron, which enables faster and more efficient drilling. The MMW drilling process offers two key advantages over traditional methods: (1) rock is melted rather than mechanically drilled, leading to faster well hole advancement, and (2) the molten rock solidifies into a vitrified wall, eliminating the need for additional casing materials. This integrated drilling and casing method has the potential to save costs, time, and materials. This paper examines the strength, structural integrity, and microscale mechanical and chemical properties of the vitrified material formed during the mm-wave process, focusing on basalt as the test material. By employing a suite of experimental and analytical characterization techniques, this study aims to provide a comprehensive comparison of the structural, mechanical, and chemical changes in the rock before and after melting, offering insights into the effectiveness and implications of mm-wave drilling for enhanced geothermal systems. Highlights There is a clear change of phase between the basalt, the transition zone, and the melt, due to mm-wave exposure. The region exposed to mm-waves is completely vitrified, while there is partial melting of minerals within the zone right outside of the mm-wave beam. The transition zone created from mm-waves poses high risk to wellbore stability due to its variable mechanical strength and chemical composition. A better understanding of this new material can be achieved by overlaying a series of chemical and mechanical characterization data.
</summary>
<dc:date>2025-12-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reimagining Commercial Health Insurance in India: A System-Dynamics Approach to Complex Stakeholder Incentives and Policy Outcomes</title>
<link href="https://hdl.handle.net/1721.1/164470" rel="alternate"/>
<author>
<name>Mor, Nachiket</name>
</author>
<author>
<name>Gupta, Aakriti</name>
</author>
<author>
<name>Roy, Rahul</name>
</author>
<id>https://hdl.handle.net/1721.1/164470</id>
<updated>2026-01-10T03:08:27Z</updated>
<published>2025-12-08T00:00:00Z</published>
<summary type="text">Reimagining Commercial Health Insurance in India: A System-Dynamics Approach to Complex Stakeholder Incentives and Policy Outcomes
Mor, Nachiket; Gupta, Aakriti; Roy, Rahul
Most low- and middle-income governments are unwilling and unable to adequately fund their health systems using tax resources. Despite this route’s popularity in public discourse, it is neither a feasible nor a desirable route for financing Universal Health Coverage (UHC), given competing public finance priorities and limited citizen demand, among other challenges. It thus becomes essential to study the underlying mechanisms behind commercial health insurance and offer citizens the best possible product, which ensures that they not only receive a high degree of protection from health and financial risk on a sustained basis but also find reasonable access and support to improve their health outcomes. In this paper, we build a system-dynamics model that simulates the aggregate behavior of the Indian health-insurance industry, with interacting feedbacks between decisions by stakeholders such as the insurer, healthy and chronically ill populations, and the regulator to outcomes like insurance penetration among segments, overall coverage, health status over the long run, a mechanism of market-discovered premium, and financial viability of the private insurer. We then investigate policy choices and scenarios to explore contrast between design choices and ideal or targeted states of this market, such as a market with 100% enrollment, risk selection by insurers, group insurance models, and managed care, and study the impact on our outcomes of interest, i.e., insurance penetration and pricing, the financial sustainability of the insurers, and the population’s health outcomes. The simulations show that even while insurers and the different population segments optimize for their respective near-term objectives, the best outcomes for all come from the managed-care policy option, which has greater insurance penetration, lower premiums, higher profitability for insurers, and better long-term health outcomes. All other choices and scenarios yield suboptimal, imbalanced systemic outcomes. We thus recommend managed care as a desirable policy alternative for low-income countries intending to improve UHC by leveraging commercial health insurance.
</summary>
<dc:date>2025-12-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Symbiotic Digital Environment Framework for Industry 4.0 and 5.0: Enhancing Lifecycle Circularity</title>
<link href="https://hdl.handle.net/1721.1/164469" rel="alternate"/>
<author>
<name>Ponce, Pedro</name>
</author>
<author>
<name>Maldonado-Romo, Javier</name>
</author>
<author>
<name>Anthony, Brian W.</name>
</author>
<author>
<name>Bradley, Russel</name>
</author>
<author>
<name>Montesinos, Luis</name>
</author>
<id>https://hdl.handle.net/1721.1/164469</id>
<updated>2026-01-10T03:08:29Z</updated>
<published>2025-12-06T00:00:00Z</published>
<summary type="text">A Symbiotic Digital Environment Framework for Industry 4.0 and 5.0: Enhancing Lifecycle Circularity
Ponce, Pedro; Maldonado-Romo, Javier; Anthony, Brian W.; Bradley, Russel; Montesinos, Luis
This paper introduces a Symbiotic Digital Environment Framework (SDEF) that integrates Human Digital Twins (HDTs) and Machine Digital Twins (MDTs) to advance lifecycle circularity across all stages of the CADMID model (i.e., Concept, Assessment, Design, Manufacture, In-Service, and Disposal). Unlike existing frameworks that address either digital twins or sustainability in isolation, SDEF establishes a bidirectional adaptive system where human, machine, and environmental digital entities continuously interact to co-optimize performance, resource efficiency, and well-being. The framework’s novelty lies in unifying human-centric adaptability (via HDTs) with circular economy principles to enable real-time symbiosis between industrial processes and their operators. Predictive analytics, immersive simulation, and continuous feedback loops dynamically adjust production parameters based on operator states and environmental conditions, extending asset lifespan while minimizing waste. Two simulation-based scenarios in VR using synthetic data demonstrate the framework’s capacity to integrate circularity metrics (material throughput, energy efficiency, remanufacturability index) with human-machine interaction variables in virtual manufacturing environments. SDEF bridges Industry 4.0’s automation capabilities and Industry 5.0’s human-centric vision, offering a scalable pathway toward sustainable and resilient industrial ecosystems by closing the loop between physical and digital realms.
</summary>
<dc:date>2025-12-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of a Test Bed to Investigate Wetting Behaviours of High-Temperature Heavy Liquid Metals for Advanced Nuclear Applications</title>
<link href="https://hdl.handle.net/1721.1/164468" rel="alternate"/>
<author>
<name>Saraswat, Abhishek</name>
</author>
<author>
<name>Bhattacharyay, Rajendraprasad</name>
</author>
<author>
<name>Chaudhuri, Paritosh</name>
</author>
<author>
<name>Gedupudi, Sateesh</name>
</author>
<id>https://hdl.handle.net/1721.1/164468</id>
<updated>2026-01-10T03:08:39Z</updated>
<published>2025-11-26T00:00:00Z</published>
<summary type="text">Development of a Test Bed to Investigate Wetting Behaviours of High-Temperature Heavy Liquid Metals for Advanced Nuclear Applications
Saraswat, Abhishek; Bhattacharyay, Rajendraprasad; Chaudhuri, Paritosh; Gedupudi, Sateesh
Specifically engineered heavy liquid metals are proposed as candidate coolants and tritium breeders for advanced nuclear applications. Understanding the wetting behaviours of these liquids on relevant substrate configurations is crucial to tackle the challenges associated with corrosion protection and flow diagnostics development. However, detailed investigations are scarce in the literature. In this experimental study, an apparatus is designed to measure contact angles of different liquid metals over a mirror-polished horizontal SS-304 substrate. This paper presents design aspects of the developed test facility, as well as initial results obtained using direct imaging and the Low-Bond Axisymmetric Drop Shape Analysis algorithm-based image processing technique. Methodological validation is achieved through surrogate liquids/liquid metals (H2O, Hg, Ga, GaInSn), prior to taking measurements from molten lead (Pb) droplets at 425 °C. Estimated contact angles obtained using the two techniques lie within ±10% deviation. Towards the end, the paper lays out plans for future upgrades for studies of wetting behaviours of molten Pb/Pb alloys on substrates with relevant surface properties, including bare P-91 and reduced-activation ferritic–martensitic steels, along with Al2O3/Er2O3-coated versions of these materials, to generate a database for Gen-IV fission reactors and fusion power plants.
</summary>
<dc:date>2025-11-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Future Circular Collider Feasibility Study Report</title>
<link href="https://hdl.handle.net/1721.1/164467" rel="alternate"/>
<author>
<name>Benedikt, M.</name>
</author>
<author>
<name>Zimmermann, F.</name>
</author>
<author>
<name>Auchmann, B.</name>
</author>
<author>
<name>Bartmann, W.</name>
</author>
<author>
<name>Burnet, J. P.</name>
</author>
<author>
<name>Carli, C.</name>
</author>
<author>
<name>Chancé, A.</name>
</author>
<author>
<name>Craievich, P.</name>
</author>
<author>
<name>Giovannozzi, M.</name>
</author>
<author>
<name>Grojean, C.</name>
</author>
<author>
<name>Gutleber, J.</name>
</author>
<author>
<name>Hanke, K.</name>
</author>
<author>
<name>Henriques, André</name>
</author>
<author>
<name>Janot, P.</name>
</author>
<author>
<name>Lourenço, C.</name>
</author>
<author>
<name>Mangano, M.</name>
</author>
<author>
<name>Otto, T.</name>
</author>
<author>
<name>Poole, J.</name>
</author>
<author>
<name>Rajagopalan, S.</name>
</author>
<author>
<name>Raubenheimer, T.</name>
</author>
<id>https://hdl.handle.net/1721.1/164467</id>
<updated>2026-01-10T03:08:37Z</updated>
<published>2025-12-24T00:00:00Z</published>
<summary type="text">Future Circular Collider Feasibility Study Report
Benedikt, M.; Zimmermann, F.; Auchmann, B.; Bartmann, W.; Burnet, J. P.; Carli, C.; Chancé, A.; Craievich, P.; Giovannozzi, M.; Grojean, C.; Gutleber, J.; Hanke, K.; Henriques, André; Janot, P.; Lourenço, C.; Mangano, M.; Otto, T.; Poole, J.; Rajagopalan, S.; Raubenheimer, T.
Volume 1 of the FCC Feasibility Report presents an overview of the physics case, experimental programme, and detector concepts for the Future Circular Collider (FCC). This volume outlines how FCC would address some of the most profound open questions in particle physics, from precision studies of the Higgs and EW bosons and of the top quark, to the exploration of physics beyond the Standard Model. The report reviews the experimental opportunities offered by the staged implementation of FCC, beginning with an electron-positron collider (FCC-ee), operating at several centre-of-mass energies, followed by a hadron collider (FCC-hh). Benchmark examples are given of the expected physics performance, in terms of precision and sensitivity to new phenomena, of each collider stage. Detector requirements and conceptual designs for FCC-ee experiments are discussed, as are the specific demands that the physics programme imposes on the accelerator in the domains of the calibration of the collision energy, and the interface region between the accelerator and the detector. The report also highlights advances in detector, software and computing technologies, as well as the theoretical tools/reconstruction techniques that will enable the precision measurements and discovery potential of the FCC experimental programme. The content and structure of this report are guided by the scope and priorities defined in the mandate of the FCC Feasibility Study. It is therefore not intended to serve as an exhaustive review of the full physics potential of FCC. Several topics, already covered in earlier reports such as the FCC CDR, are not reiterated here or are addressed only briefly, in alignment with the study’s focus. This volume reflects the outcome of a global collaborative effort involving hundreds of scientists and institutions, aided by a dedicated community-building coordination, and provides a targeted assessment of the scientific opportunities and experimental foundations of the FCC programme.
</summary>
<dc:date>2025-12-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Unregulated Vertical Urban Growth Alters Microclimate: Coupling Building-Scale Digital Surface Models with High-Resolution Microclimate Simulations</title>
<link href="https://hdl.handle.net/1721.1/164466" rel="alternate"/>
<author>
<name>Falcão, Jonatas Goulart Marinho</name>
</author>
<author>
<name>Furtado, Luiz Felipe de Almeida</name>
</author>
<author>
<name>Barbosa, Gisele Silva</name>
</author>
<author>
<name>Teixeira Coelho, Luiz Carlos</name>
</author>
<id>https://hdl.handle.net/1721.1/164466</id>
<updated>2026-01-10T03:08:51Z</updated>
<published>2025-11-10T00:00:00Z</published>
<summary type="text">Unregulated Vertical Urban Growth Alters Microclimate: Coupling Building-Scale Digital Surface Models with High-Resolution Microclimate Simulations
Falcão, Jonatas Goulart Marinho; Furtado, Luiz Felipe de Almeida; Barbosa, Gisele Silva; Teixeira Coelho, Luiz Carlos
Rio de Janeiro&amp;rsquo;s favelas house over 20% of the city&amp;rsquo;s population in just 5% of its territory, with Rio das Pedras emerging as a critical case study: ranking as Brazil&amp;rsquo;s fifth most populous favela and its most vertically intensified. This study quantifies how uncontrolled vertical growth in informal settlements disrupts microclimate dynamics, directly impacting thermal comfort. Using high-resolution geospatial analytics, we integrated digital surface models (DSMs) derived from LiDAR and photogrammetric data (2013, 2019, and 2024) with microclimatic simulations to assess urban morphology changes and their thermal effects. A spatiotemporal cadastral analysis tracked vertical expansion (new floors) and demolition patterns, while ENVI-met simulations mapped air temperature anomalies across decadal scenarios. Results reveal two key findings: (1) rapid, unregulated construction has significantly altered local airflow and surface energy balance, exacerbating the urban heat island (UHI) effect; (2) microclimatic simulations consistently recorded elevated temperatures, with the most pronounced impacts in densely built zones. These findings underscore the need for public policies to mitigate such negative effects observed in informal settlement areas.
</summary>
<dc:date>2025-11-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Symbolic Bridge: A Monograph on Niela Miller Life’s Work</title>
<link href="https://hdl.handle.net/1721.1/164465" rel="alternate"/>
<author>
<name>Labrune, Jean-Baptiste</name>
</author>
<id>https://hdl.handle.net/1721.1/164465</id>
<updated>2026-01-10T03:05:14Z</updated>
<published>2026-01-09T00:00:00Z</published>
<summary type="text">The Symbolic Bridge: A Monograph on Niela Miller Life’s Work
Labrune, Jean-Baptiste
This monograph examines the interdisciplinary contributions of Niela Miller, specifically her development of Symbolic Modeling (SymMod) and its role in bridging humanistic psychology with technological innovation. Situated within the MIT Media Lab’s framework of unconventional synthesis, the study explores how Miller’s focus on tacit, pre-verbal, and intuitive knowledge complements data-driven paradigms. The research archives her transition from bodily-based psychological practices to pioneering work in virtual learning environments and "metaliteracy." By analyzing Miller’s methodology for unlocking human potential through symbolic expression, this document provides a formal architecture for integrating and extending human consciousness into the design of future technologies.
In an era dominated by code and explicit data, the work of Niela Miller serves as a vital reminder that human innovation is rooted in the intuitive and the symbolic. This document offers an immersive look into Miller’s lifelong exploration of the "inner landscape," tracing her journey from foundational humanistic psychology to her visionary use of virtual spaces as laboratories for authentic interaction.&#13;
&#13;
Through the lens of the MIT Media Lab, we explore her Symbolic Modeling methodology—a replicable system designed to translate deep, pre-verbal insights into tangible creation. Whether she is utilizing bodily performance to map the psyche or defining new frontiers of digital literacy, Miller’s work challenges the boundary between the human experience and technological advancement. This is more than an archive; it is a celebration of the belief that our most profound breakthroughs come from what we can symbolically express but not always logically articulate.
</summary>
<dc:date>2026-01-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Striking a Pose: DIY Computer Vision Sensor Kit to Measure Public Life Using Pose Estimation Enhanced Action Recognition Model</title>
<link href="https://hdl.handle.net/1721.1/164463" rel="alternate"/>
<author>
<name>Williams, Sarah</name>
</author>
<author>
<name>Kang, Minwook</name>
</author>
<id>https://hdl.handle.net/1721.1/164463</id>
<updated>2026-01-09T06:25:43Z</updated>
<published>2025-11-01T00:00:00Z</published>
<summary type="text">Striking a Pose: DIY Computer Vision Sensor Kit to Measure Public Life Using Pose Estimation Enhanced Action Recognition Model
Williams, Sarah; Kang, Minwook
Observing and measuring public life is essential for designing inclusive, vibrant, and climate-resilient public spaces. While urban planners have traditionally relied on manual observation, recent advances in open-source Computer Vision (CV) now enable automated analysis. However, most CV sensors in urban studies focus on transportation analysis, offering limited insight into nuanced human behaviors such as sitting or socializing. This limitation stems in part from the challenges CV algorithms face in detecting subtle activities within public spaces. This study introduces the Public Life Sensor Kit (PLSK), an open-source, do-it-yourself system that integrates a GoPro camera with an NVIDIA Jetson edge device, and evaluates whether pose estimation-enhanced CV models can improve the detection of fine-grained public life behaviors, such as sitting and social interaction. The PLSK was deployed during a public space intervention project in Sydney, Australia. The resulting data were measured against data collected from the Vivacity sensor, a commercial transportation-focused CV system, and traditional human observation. The results show that the PLSK outperforms the commercial sensor in detecting and classifying key public life activities, including pedestrian traffic, sitting, and socializing. These findings highlight the potential of the PLSK to support ethically collected and behavior-rich public space analysis and advocate for its adoption in next-generation urban sensing technologies.
</summary>
<dc:date>2025-11-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Pretreatment of Mice with 830 nm Light Enhances Endurance During Acute Exercise</title>
<link href="https://hdl.handle.net/1721.1/164462" rel="alternate"/>
<author>
<name>Cheema, Nashwa</name>
</author>
<author>
<name>Ghag, Namrata</name>
</author>
<author>
<name>Pham, Linh</name>
</author>
<author>
<name>Wise, Emma</name>
</author>
<author>
<name>Fuchs, Christiane</name>
</author>
<author>
<name>Anderson, Rox</name>
</author>
<author>
<name>Tam, Joshua</name>
</author>
<id>https://hdl.handle.net/1721.1/164462</id>
<updated>2026-01-09T06:25:47Z</updated>
<published>2025-10-23T00:00:00Z</published>
<summary type="text">Pretreatment of Mice with 830 nm Light Enhances Endurance During Acute Exercise
Cheema, Nashwa; Ghag, Namrata; Pham, Linh; Wise, Emma; Fuchs, Christiane; Anderson, Rox; Tam, Joshua
Light therapy has been shown to produce several beneficial physiological effects in a wide range of tissues. The musculoskeletal system can be irradiated with deeply penetrating wavelengths in near infrared (NIR) regions. Photobiomodulation therapy (PBMT) reduces pain and inflammation and enhances physical performance. However, the mechanism(s) of cellular responses to PBMT in muscle is not clearly understood. Therefore, the goal of this study is to improve our understanding of the mechanism(s) of action of PBMT effects in exercised and sedentary muscle. In sedentary mice, PBMT using a wavelength of 830 nm increased the gene expression for muscle tissue development, including cFos, which is critical for activating interstitial and satellite cells that repair muscle. Immunostaining for cFOS expression confirmed an increase in the number of activated cells in PBMT-treated muscle. We observed that PBMT-treated mice showed increased performance on the treadmill, reduced muscle fiber damage, and altered mitochondrial structure. RNA sequencing from fatigued TA tissue suggested that PBMT treatment increased the gene expression of tissue regeneration and remodeling, suggesting tissue adaptation and muscle repair after exercise with PBMT. In conclusion, our study suggests that the 830 nm wavelength may have altered the muscle by activating regenerative genes that protect the tissue from exercise-induced cellular stress.
</summary>
<dc:date>2025-10-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Integrating Physiologic Assessment into Virtual Reality-Based Pediatric Pain Intervention: A Feasibility Study</title>
<link href="https://hdl.handle.net/1721.1/164461" rel="alternate"/>
<author>
<name>Marwah, Harsheen</name>
</author>
<author>
<name>Moldovanu, Stefania R.</name>
</author>
<author>
<name>Reks, Talis</name>
</author>
<author>
<name>Anthony, Brian</name>
</author>
<author>
<name>Logan, Deirdre E.</name>
</author>
<id>https://hdl.handle.net/1721.1/164461</id>
<updated>2026-01-09T06:25:49Z</updated>
<published>2025-10-22T00:00:00Z</published>
<summary type="text">Integrating Physiologic Assessment into Virtual Reality-Based Pediatric Pain Intervention: A Feasibility Study
Marwah, Harsheen; Moldovanu, Stefania R.; Reks, Talis; Anthony, Brian; Logan, Deirdre E.
This feasibility study explored the integration of physiological monitoring into a virtual reality (VR) intervention for pediatric pain management. The goal of this study is to identify a feasible strategy for collecting physiologic data in the context of a VR intervention currently being developed for youth with chronic pain. We assess the potential of Cognitive Load (CL)—derived from heart rate and pupillometry/eye-tracking data—as a marker of arousal and user engagement in a VR simulation to promote school functioning in youth with chronic pain. The HP Reverb G2 Omnicept headset and Polar H10 heart-rate sensor were utilized. The Child Presence Questionnaire (CPQ) assessed participants’ self-reported immersion and engagement. Data collection focused on feasibility and utility of physiologic data in assessing arousal and correlations with self-reported experience. Nine participants engaged in the simulation, with eight yielding complete data. The simulation and headset were well tolerated. CPQ Transportation subscale showed trend-level correlation with mean CL. Due to small sample and feasibility focus, individual-level results were examined. Combining multiple physiologic markers into a construct like CL is intriguing, but data interpretability was limited. Pupillometry and related metrics show promise as feasible markers of engagement and arousal for VR-based intervention but require appropriate expertise to fully interpret. The study found that integration of physiologic monitoring is feasible, but further work is needed to standardize metrics and identify the most useful and user-friendly markers.
</summary>
<dc:date>2025-10-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Two Decades of CARICOMP Mangrove Monitoring (1992–2013) Reveal Variability in Tree Structure and Productivity of Rhizophora mangle Across the Wider Caribbean</title>
<link href="https://hdl.handle.net/1721.1/164460" rel="alternate"/>
<author>
<name>Kjerfve, Björn</name>
</author>
<author>
<name>Oxenford, Hazel A.</name>
</author>
<author>
<name>Collin, Rachel</name>
</author>
<author>
<name>Pestana, Inácio Abreu</name>
</author>
<author>
<name>Samper-Villarreal, Jimena</name>
</author>
<author>
<name>Medina-Gómez, Israel</name>
</author>
<author>
<name>Cortés, Jorge</name>
</author>
<author>
<name>Smith, Struan R.</name>
</author>
<author>
<name>Koltes, Karen</name>
</author>
<author>
<name>Feller, Ilka C.</name>
</author>
<author>
<name>Bastidas, Carolina</name>
</author>
<author>
<name>Juman, Rahanna</name>
</author>
<author>
<name>Geraldes, Francisco X.</name>
</author>
<author>
<name>Filippo, Alessandro</name>
</author>
<author>
<name>Varela, Ramon</name>
</author>
<author>
<name>McCoy, Croy</name>
</author>
<author>
<name>Garzón-Ferreira, Jaime</name>
</author>
<author>
<name>Polanía, Jaime</name>
</author>
<author>
<name>Capelo, Juan C.</name>
</author>
<author>
<name>Ogden, John</name>
</author>
<id>https://hdl.handle.net/1721.1/164460</id>
<updated>2026-01-09T06:25:50Z</updated>
<published>2025-12-01T00:00:00Z</published>
<summary type="text">Two Decades of CARICOMP Mangrove Monitoring (1992–2013) Reveal Variability in Tree Structure and Productivity of Rhizophora mangle Across the Wider Caribbean
Kjerfve, Björn; Oxenford, Hazel A.; Collin, Rachel; Pestana, Inácio Abreu; Samper-Villarreal, Jimena; Medina-Gómez, Israel; Cortés, Jorge; Smith, Struan R.; Koltes, Karen; Feller, Ilka C.; Bastidas, Carolina; Juman, Rahanna; Geraldes, Francisco X.; Filippo, Alessandro; Varela, Ramon; McCoy, Croy; Garzón-Ferreira, Jaime; Polanía, Jaime; Capelo, Juan C.; Ogden, John
The Caribbean Coastal Marine Productivity (CARICOMP) program was conceptualized in 1985 to monitor coral reefs, seagrass beds, and mangrove forests at multiple sites across the wider Caribbean. Mangrove monitoring was focused on the dominant Caribbean species, red mangrove (Rhizophora mangle). Forest structure and productivity were monitored at 21 sites (18 countries) across different geomorphological settings, from tropical to subtropical mainland and island systems. Here, we provide the key findings from the CARICOMP mangrove data collected, mostly from 1992 to 2013, to assess spatial and temporal variability across the region. Red mangrove above-ground biomass averaged 190 t ha−1 (far higher than previously reported) but ranged widely across sites from 33 to 590 t ha−1, equating to an average above-ground ‘blue carbon’ of 84 t ha−1 (range 15–260 t ha−1). Tree density averaged 3237 trees ha−1, tree basal area averaged 19.7 m2 ha−1, tree height averaged 6.1 ± 2.8 m, and seedling density varied from 1.2 to 74 seedlings m−2 across the sites. Among the environmental factors that influence mangroves, local temperature and rainfall explained 48% of the variability in measured tree structure parameters. Annual litterfall, as a proxy for productivity, measured on average 1.24 ± 0.70 kg m−2 yr−1, with 60% of the total litterfall composed of leaves. Litterfall varied seasonally by 42%. No relationship was apparent between litterfall and seasonal ocean–atmosphere climate indices (ONI and AMM). With exception of the three most southwesterly CARICOMP sites, hurricanes and tropical storms impacted the mangrove sites repeatedly, resulting in considerable damage. A direct strike by a category-4 hurricane in 1998 in Dominican Republic killed 67% of the red mangrove trees, lowered above-ground biomass by 91%, basal area by 89%, litterfall by 63%, and resulted in the subsequent growth of many tall and thin saplings, totally changing the structure of the forest ecosystem in the first few years after the hurricane. In comparing mangrove systems, major differences may be explained by time elapsed since the last destructive event (hurricane) affecting each site. This highlights the fact that despite an increasing focus on preserving these valuable ecosystems, they are still highly vulnerable to natural hazards and likely to face a poor outcome under ongoing climate change.
</summary>
<dc:date>2025-12-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Thallium(I) Uptake and Accumulation by Wheat and Rice Plants</title>
<link href="https://hdl.handle.net/1721.1/164459" rel="alternate"/>
<author>
<name>Yang, Puu-Tai</name>
</author>
<author>
<name>Chang, Hsin-Fang</name>
</author>
<author>
<name>Huang, Liang-Sin</name>
</author>
<author>
<name>Chuang, Tsung-Ju</name>
</author>
<author>
<name>Wang, Shan-Li</name>
</author>
<id>https://hdl.handle.net/1721.1/164459</id>
<updated>2026-01-09T06:25:52Z</updated>
<published>2025-12-17T00:00:00Z</published>
<summary type="text">Thallium(I) Uptake and Accumulation by Wheat and Rice Plants
Yang, Puu-Tai; Chang, Hsin-Fang; Huang, Liang-Sin; Chuang, Tsung-Ju; Wang, Shan-Li
Thallium (Tl) is a highly toxic trace metal of increasing concern in agricultural soils. This study investigated the uptake, accumulation, and tissue-level distribution of Tl(I) in rice (Oryza sativa L.) and wheat (Triticum aestivum L.) grown in three agricultural soils differing in soil pH and texture. In the seedling pot experiment (0–100 mg kg−1 soil Tl), plant Tl concentrations increased dose-dependently, and were at least an order of magnitude lower in the alkaline soil than in the acidic soils. Bioaccumulation factors of roots and shoots generally exceeded unity and declined with increasing Tl dose in acidic soils, consistent with uptake saturation and physiological stress at high exposure. To elucidate how soil Tl speciation and pH regulate Tl availability, X-ray absorption spectroscopy (XAS) was used; it showed that Tl(I)—sorbed on illite was the predominant species in all soils (89–95%), with a minor fraction (5–11%) associated with non-specific adsorption. In maturity pots (5 mg kg−1 soil Tl), both crops grown in the moderately acidic, coarse-textured soil translocated a small fraction of absorbed Tl to grains, with wheat and rice containing 0.24 and 0.10 mg kg−1 Tl, respectively. Comparatively, plants in the more acidic soil failed to reach maturity, and grain Tl was not detected in the alkaline soil. LA-ICP-MS mapping revealed Tl enrichment in the bran and embryo of rice and in the crease, bran, and embryo of wheat, indicating that unpolished grains may pose higher dietary exposure risks than polished products. Overall, these findings demonstrate the key roles of soil pH and mineral composition in governing soil Tl availability and plant Tl uptake, whereas plant transport processes regulate grain Tl loading. In the absence of food-safety standards for Tl, the results of this study underscore the need to better understand and mitigate Tl transfer from contaminated soils into human food chains via cereal crops.
</summary>
<dc:date>2025-12-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>A study of the field control operation of railway motors : a thesis</title>
<link href="https://hdl.handle.net/1721.1/164458" rel="alternate"/>
<author>
<name>Davis, Stanley W.
            (Stanley Whitcomb)</name>
</author>
<id>https://hdl.handle.net/1721.1/164458</id>
<updated>2026-01-07T03:24:36Z</updated>
<published>1925-01-01T00:00:00Z</published>
<summary type="text">A study of the field control operation of railway motors : a thesis
Davis, Stanley W.
            (Stanley Whitcomb)
Thesis: B.S., Massachusetts Institute of Technology, Department of Electrical Engineering, 1925; Includes bibliographical references (leaf 91).
</summary>
<dc:date>1925-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reviewing I.S. : how to handle legacy systems?</title>
<link href="https://hdl.handle.net/1721.1/164457" rel="alternate"/>
<author>
<name>Orlando, Ricardo,
            1966-</name>
</author>
<id>https://hdl.handle.net/1721.1/164457</id>
<updated>2026-01-07T03:23:47Z</updated>
<published>1999-01-01T00:00:00Z</published>
<summary type="text">Reviewing I.S. : how to handle legacy systems?
Orlando, Ricardo,
            1966-
Thesis: S.M.M.O.T., Massachusetts Institute of Technology, Sloan School of Management, Management of Technology Program, 1999; Includes bibliographical references (leaves 100-106).
</summary>
<dc:date>1999-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The effects of changing economic conditions on energy costs in stainless-steel clad pressurized water reactors</title>
<link href="https://hdl.handle.net/1721.1/164456" rel="alternate"/>
<author>
<name>Trapp, Donald L.</name>
</author>
<id>https://hdl.handle.net/1721.1/164456</id>
<updated>2026-01-07T03:23:33Z</updated>
<published>1962-01-01T00:00:00Z</published>
<summary type="text">The effects of changing economic conditions on energy costs in stainless-steel clad pressurized water reactors
Trapp, Donald L.
Thesis: M.S., Massachusetts Institute of Technology, Department of Nuclear Engineering, 1962; Appendix contains numerous pamphlets.; Includes bibliographical references (leaves 135-136).
</summary>
<dc:date>1962-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The politics of metropolitan transportation.</title>
<link href="https://hdl.handle.net/1721.1/164455" rel="alternate"/>
<author>
<name>Colcord, Frank Carlton.</name>
</author>
<id>https://hdl.handle.net/1721.1/164455</id>
<updated>2026-01-07T03:04:18Z</updated>
<published>1964-01-01T00:00:00Z</published>
<summary type="text">The politics of metropolitan transportation.
Colcord, Frank Carlton.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Economics and Social Science, 1964
</summary>
<dc:date>1964-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The design of a control system for the terminal phase of a satellite rendezvous</title>
<link href="https://hdl.handle.net/1721.1/164454" rel="alternate"/>
<author>
<name>Hollister, Walter M.,
            1930-</name>
</author>
<id>https://hdl.handle.net/1721.1/164454</id>
<updated>2026-01-07T03:23:50Z</updated>
<published>1959-01-01T00:00:00Z</published>
<summary type="text">The design of a control system for the terminal phase of a satellite rendezvous
Hollister, Walter M.,
            1930-
Thesis: M.S., Massachusetts Institute of Technology, Department of Aeronautics and Astronautics, 1959; Includes bibliographical references (leaf 47).
</summary>
<dc:date>1959-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Compliance in a gyroscope gimbal</title>
<link href="https://hdl.handle.net/1721.1/164453" rel="alternate"/>
<author>
<name>Graham, James William.</name>
</author>
<id>https://hdl.handle.net/1721.1/164453</id>
<updated>2026-01-07T03:24:32Z</updated>
<published>1958-01-01T00:00:00Z</published>
<summary type="text">Compliance in a gyroscope gimbal
Graham, James William.
Thesis: B.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1958
</summary>
<dc:date>1958-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>On hypergraphs and hypergeometries.</title>
<link href="https://hdl.handle.net/1721.1/164452" rel="alternate"/>
<author>
<name>Helgason, Thorkell.</name>
</author>
<id>https://hdl.handle.net/1721.1/164452</id>
<updated>2026-01-07T03:04:03Z</updated>
<published>1971-01-01T00:00:00Z</published>
<summary type="text">On hypergraphs and hypergeometries.
Helgason, Thorkell.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Mathematics, 1971; Vita.; Bibliography: leaves 158-159.
</summary>
<dc:date>1971-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Noise analysis of circuit models representing maser operation.</title>
<link href="https://hdl.handle.net/1721.1/164451" rel="alternate"/>
<author>
<name>Hempstead, Robert Douglas.</name>
</author>
<id>https://hdl.handle.net/1721.1/164451</id>
<updated>2026-01-07T03:23:54Z</updated>
<published>1965-01-01T00:00:00Z</published>
<summary type="text">Noise analysis of circuit models representing maser operation.
Hempstead, Robert Douglas.
Thesis: M.S., Massachusetts Institute of Technology, Department of Electrical Engineering, 1965; Bibliography: leaves 106-108.
</summary>
<dc:date>1965-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cocoa in the Ghanaian economy.</title>
<link href="https://hdl.handle.net/1721.1/164450" rel="alternate"/>
<author>
<name>Bateman, Merril Joseph.</name>
</author>
<id>https://hdl.handle.net/1721.1/164450</id>
<updated>2026-01-07T03:03:55Z</updated>
<published>1965-01-01T00:00:00Z</published>
<summary type="text">Cocoa in the Ghanaian economy.
Bateman, Merril Joseph.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Economics, 1965
</summary>
<dc:date>1965-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Even denominator quantum numbers and termination of the fractional series in the fractional quantum hall effect</title>
<link href="https://hdl.handle.net/1721.1/164449" rel="alternate"/>
<author>
<name>Willett, Robert L.
            (Robert Lee)</name>
</author>
<id>https://hdl.handle.net/1721.1/164449</id>
<updated>2026-01-07T03:04:22Z</updated>
<published>1989-01-01T00:00:00Z</published>
<summary type="text">Even denominator quantum numbers and termination of the fractional series in the fractional quantum hall effect
Willett, Robert L.
            (Robert Lee)
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Physics, 1989; Includes bibliographical references (leaves 6-7).
</summary>
<dc:date>1989-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Improving railroad terminal control systems : a case study of Southern Railway's Brosnan yard</title>
<link href="https://hdl.handle.net/1721.1/164448" rel="alternate"/>
<author>
<name>Ferguson, William Lloyd.</name>
</author>
<id>https://hdl.handle.net/1721.1/164448</id>
<updated>2026-01-07T03:23:43Z</updated>
<published>1979-01-01T00:00:00Z</published>
<summary type="text">Improving railroad terminal control systems : a case study of Southern Railway's Brosnan yard
Ferguson, William Lloyd.
Thesis: M.S., Massachusetts Institute of Technology, Department of Civil Engineering, 1979; Bibliography: leaves 194-195.
</summary>
<dc:date>1979-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Investigations in the theory of quantum corrections to classical solutions of the Yang-Mills equations</title>
<link href="https://hdl.handle.net/1721.1/164447" rel="alternate"/>
<author>
<name>Callias, Constantine John.</name>
</author>
<id>https://hdl.handle.net/1721.1/164447</id>
<updated>2026-01-07T03:04:06Z</updated>
<published>1979-01-01T00:00:00Z</published>
<summary type="text">Investigations in the theory of quantum corrections to classical solutions of the Yang-Mills equations
Callias, Constantine John.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Physics, 1979; Includes bibliographical references.
</summary>
<dc:date>1979-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wave equations, particles and chronometric geometry.</title>
<link href="https://hdl.handle.net/1721.1/164446" rel="alternate"/>
<author>
<name>Orsted, Bent.</name>
</author>
<id>https://hdl.handle.net/1721.1/164446</id>
<updated>2026-01-07T03:03:58Z</updated>
<published>1976-01-01T00:00:00Z</published>
<summary type="text">Wave equations, particles and chronometric geometry.
Orsted, Bent.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Mathematics, 1976; Includes bibliographical references.
</summary>
<dc:date>1976-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Planteez(tm) : business plan and preliminary research</title>
<link href="https://hdl.handle.net/1721.1/164445" rel="alternate"/>
<author>
<name>Sanchez, Manuel A.
            (Manuel Andres),
            1979-</name>
</author>
<id>https://hdl.handle.net/1721.1/164445</id>
<updated>2026-01-07T03:24:18Z</updated>
<published>2001-01-01T00:00:00Z</published>
<summary type="text">Planteez(tm) : business plan and preliminary research
Sanchez, Manuel A.
            (Manuel Andres),
            1979-
Thesis: S.B., Massachusetts Institute of Technology, Department of Mechanical Engineering, 2001; Includes bibliographical references (p. 15).
</summary>
<dc:date>2001-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Refutability Gap: Challenges in Validating Reasoning by Large Language Models</title>
<link href="https://hdl.handle.net/1721.1/164444" rel="alternate"/>
<author>
<name>Mossel, Elchanan</name>
</author>
<id>https://hdl.handle.net/1721.1/164444</id>
<updated>2026-01-07T03:01:39Z</updated>
<published>2026-01-06T00:00:00Z</published>
<summary type="text">The Refutability Gap: Challenges in Validating Reasoning by Large Language Models
Mossel, Elchanan
Recent reports claim that Large Language Models (LLMs) have achieved the ability to derive new science and exhibit human-level general intelligence. We argue that such claims are not rigorous scientific claims, as they do not satisfy Popper’s refutability principle (often termed falsifiability), which requires that scientific statements be capable of being disproven. We identify several methodological pitfalls in current AI research on reasoning, including the inability to verify the novelty of findings due to opaque and non-searchable training data, the lack of reproducibility caused by continuous model updates, and the omission of human-interaction transcripts, which obscures the true source of scientific discovery. Additionally, the absence of counterfactuals and data on failed attempts creates a selection bias that may exaggerate LLM capabilities. To address these challenges, we propose guidelines for scientific transparency and reproducibility for research on reasoning by LLMs. Establishing such guidelines is crucial for both scientific integrity and the ongoing societal debates regarding fair data usage.
</summary>
<dc:date>2026-01-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Proximity Loses: Real-Time Resolution of Ambiguous Wh-Questions in Japanese</title>
<link href="https://hdl.handle.net/1721.1/164441" rel="alternate"/>
<author>
<name>Nakamura, Chie</name>
</author>
<author>
<name>Flynn, Suzanne</name>
</author>
<author>
<name>Miyamoto, Yoichi</name>
</author>
<author>
<name>Yusa, Noriaki</name>
</author>
<id>https://hdl.handle.net/1721.1/164441</id>
<updated>2026-04-14T03:38:24Z</updated>
<published>2025-11-25T00:00:00Z</published>
<summary type="text">Proximity Loses: Real-Time Resolution of Ambiguous Wh-Questions in Japanese
Nakamura, Chie; Flynn, Suzanne; Miyamoto, Yoichi; Yusa, Noriaki
This study investigated how Japanese speakers interpret structurally ambiguous wh-questions, testing whether filler–gap resolution is guided by syntactic resolution based on hierarchical structure or linear locality based on surface word order. We combined behavioral key-press responses with fine-grained eye-tracking data and applied cluster-based permutation analysis to capture the moment-by-moment time course of syntactic interpretation as sentences were processed in real time. Key-press responses revealed a preference for resolving the dependency at the main clause (MC) gap position. Eye-tracking data showed early predictive fixations to the MC picture, followed by shifts to the embedded clause (EC) picture as the embedded event was described. These shifts occurred prior to the appearance of syntactic cues that signal the presence of an EC structure, such as the complementizer -to, and were therefore most likely guided by referential alignment with the linguistic input rather than by syntactic reanalysis. A subsequent return of the gaze to the MC picture occurred when the clause-final question particle -ka became available, confirming the interrogative use of the wh-phrase. Both key-press and eye-tracking data showed that participants did not commit to the first grammatically available EC interpretation but instead waited until clause-final particle information confirmed the interrogative use of the wh-phrase, ultimately favoring the MC interpretation. This pattern supports the view that filler–gap resolution is guided by structural locality rather than linear locality. By using high-resolution temporal data and statistically robust analytic techniques, this study demonstrates that Japanese comprehenders engage in predictive yet structurally cautious parsing. These findings challenge earlier claims that filler–gap resolution in Japanese is primarily driven by linear locality and instead showed a preference for resolving dependencies at the structurally higher MC position, consistent with parsing biases previously observed in English, despite typological differences in word order between the two languages. This preference also reflects sensitivity to language-specific morpho-syntactic cues in Japanese, such as clause-final particles.
</summary>
<dc:date>2025-11-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Engineering peroxisomal biosynthetic pathways for maximization of triterpene production in Yarrowia lipolytica</title>
<link href="https://hdl.handle.net/1721.1/164440" rel="alternate"/>
<author>
<name>Ma, Yongshuo</name>
</author>
<author>
<name>Shang, Yi</name>
</author>
<author>
<name>Stephanopoulos, Gregory</name>
</author>
<id>https://hdl.handle.net/1721.1/164440</id>
<updated>2026-04-14T03:38:07Z</updated>
<published>2024-01-23T00:00:00Z</published>
<summary type="text">Engineering peroxisomal biosynthetic pathways for maximization of triterpene production in Yarrowia lipolytica
Ma, Yongshuo; Shang, Yi; Stephanopoulos, Gregory
Constructing efficient cell factories for product synthesis is frequently hampered by competing pathways and/or insufficient precursor supply. This is particularly evident in the case of triterpenoid biosynthesis in Yarrowia lipolytica, where squalene biosynthesis is tightly coupled to cytosolic biosynthesis of sterols essential for cell viability. Here, we addressed this problem by reconstructing the complete squalene biosynthetic pathway, starting from acetyl-CoA, in the peroxisome, thus harnessing peroxisomal acetyl-CoA pool and sequestering squalene synthesis in this organelle from competing cytosolic reactions. This strategy led to increasing the squalene levels by 1,300-fold relatively to native cytosolic synthesis. Subsequent enhancement of the peroxisomal acetyl-CoA supply by two independent approaches, 1) converting cellular lipid pool to peroxisomal acetyl-CoA and 2) establishing an orthogonal acetyl-CoA shortcut from CO2-derived acetate in the peroxisome, further significantly improved local squalene accumulation. Using these approaches, we constructed squalene-producing strains capable of yielding 32.8 g/L from glucose, and 31.6 g/L from acetate by employing a cofeeding strategy, in bioreactor fermentations. Our findings provide a feasible strategy for protecting intermediate metabolites that can be claimed by multiple reactions by engineering peroxisomes in Y. lipolytica as microfactories for the production of such intermediates and in particular acetyl-CoA-derived metabolites.
</summary>
<dc:date>2024-01-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Drug screening in human physiologic medium identifies uric acid as an inhibitor of rigosertib efficacy</title>
<link href="https://hdl.handle.net/1721.1/164439" rel="alternate"/>
<author>
<name>Rawat, Vipin</name>
</author>
<author>
<name>DeLear, Patrick</name>
</author>
<author>
<name>Prashanth, Prarthana</name>
</author>
<author>
<name>Ozgurses, Mete Emir</name>
</author>
<author>
<name>Tebeje, Anteneh</name>
</author>
<author>
<name>Burns, Philippa A</name>
</author>
<author>
<name>Conger, Kelly O</name>
</author>
<author>
<name>Solís, Christopher</name>
</author>
<author>
<name>Hasnain, Yasir</name>
</author>
<author>
<name>Novikova, Anna</name>
</author>
<author>
<name>Endress, Jennifer E</name>
</author>
<author>
<name>González-Sánchez, Paloma</name>
</author>
<author>
<name>Dong, Wentao</name>
</author>
<author>
<name>Stephanopoulos, Greg</name>
</author>
<author>
<name>DeNicola, Gina M</name>
</author>
<author>
<name>Harris, Isaac S</name>
</author>
<author>
<name>Sept, David</name>
</author>
<author>
<name>Mason, Frank M</name>
</author>
<author>
<name>Coloff, Jonathan L</name>
</author>
<id>https://hdl.handle.net/1721.1/164439</id>
<updated>2026-04-14T03:38:07Z</updated>
<published>2024-05-30T00:00:00Z</published>
<summary type="text">Drug screening in human physiologic medium identifies uric acid as an inhibitor of rigosertib efficacy
Rawat, Vipin; DeLear, Patrick; Prashanth, Prarthana; Ozgurses, Mete Emir; Tebeje, Anteneh; Burns, Philippa A; Conger, Kelly O; Solís, Christopher; Hasnain, Yasir; Novikova, Anna; Endress, Jennifer E; González-Sánchez, Paloma; Dong, Wentao; Stephanopoulos, Greg; DeNicola, Gina M; Harris, Isaac S; Sept, David; Mason, Frank M; Coloff, Jonathan L
The nonphysiological nutrient levels found in traditional culture media have been shown to affect numerous aspects of cancer cell physiology, including how cells respond to certain therapeutic agents. Here, we comprehensively evaluated how physiological nutrient levels affect therapeutic response by performing drug screening in human plasma-like medium. We observed dramatic nutrient-dependent changes in sensitivity to a variety of FDA-approved and clinically trialed compounds, including rigosertib, an experimental cancer therapeutic that recently failed in phase III clinical trials. Mechanistically, we found that the ability of rigosertib to destabilize microtubules is strongly inhibited by the purine metabolism end product uric acid, which is uniquely abundant in humans relative to traditional in vitro and in vivo cancer models. These results demonstrate the broad and dramatic effects nutrient levels can have on drug response and how incorporation of human-specific physiological nutrient medium might help identify compounds whose efficacy could be influenced in humans.
</summary>
<dc:date>2024-05-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Metabolic Engineering of E. coli for Enhanced Diols Production from Acetate</title>
<link href="https://hdl.handle.net/1721.1/164438" rel="alternate"/>
<author>
<name>Ricci, Luca</name>
</author>
<author>
<name>Cen, Xuecong</name>
</author>
<author>
<name>Zu, Yuexuan</name>
</author>
<author>
<name>Antonicelli, Giacomo</name>
</author>
<author>
<name>Chen, Zhen</name>
</author>
<author>
<name>Fino, Debora</name>
</author>
<author>
<name>Pirri, Fabrizio C</name>
</author>
<author>
<name>Stephanopoulos, Gregory</name>
</author>
<author>
<name>Woolston, Benjamin M</name>
</author>
<author>
<name>Re, Angela</name>
</author>
<id>https://hdl.handle.net/1721.1/164438</id>
<updated>2026-04-14T03:37:42Z</updated>
<published>2025-04-18T00:00:00Z</published>
<summary type="text">Metabolic Engineering of E. coli for Enhanced Diols Production from Acetate
Ricci, Luca; Cen, Xuecong; Zu, Yuexuan; Antonicelli, Giacomo; Chen, Zhen; Fino, Debora; Pirri, Fabrizio C; Stephanopoulos, Gregory; Woolston, Benjamin M; Re, Angela
Effective employment of renewable carbon sources is highly demanded to develop sustainable biobased manufacturing. Here, we developed Escherichia coli strains to produce 2,3-butanediol and acetoin (collectively referred to as diols) using acetate as the sole carbon source by stepwise metabolic engineering. When tested in fed-batch experiments, the strain overexpressing the entire acetate utilization pathway was found to consume acetate at a 15% faster rate (0.78 ± 0.05 g/g/h) and to produce a 35% higher diol titer (1.16 ± 0.01 g/L) than the baseline diols-producing strain. Moreover, singularly overexpressing the genes encoding alternative acetate uptake pathways as well as alternative isoforms of genes in the malate-to-pyruvate pathway unveiled that leveraging ackA-pta and maeA is more effective in enhancing acetate consumption and diols production, compared to acs and maeB. Finally, the increased substrate consumption rate and diol production obtained in flask-based experiments were confirmed in bench-scale bioreactors operated in fed-batch mode. Consequently, the highest titer of 1.56 g/L achieved in this configuration increased by over 30% compared to the only other similar effort carried out so far.
</summary>
<dc:date>2025-04-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Constant Degree Networks for Almost-Everywhere Reliable Transmission</title>
<link href="https://hdl.handle.net/1721.1/164437" rel="alternate"/>
<author>
<name>Bafna, Mitali</name>
</author>
<author>
<name>Minzer, Dor</name>
</author>
<id>https://hdl.handle.net/1721.1/164437</id>
<updated>2026-04-14T03:20:11Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Constant Degree Networks for Almost-Everywhere Reliable Transmission
Bafna, Mitali; Minzer, Dor
In the almost-everywhere reliable message transmission problem, introduced by [Dwork, Pippenger, Peleg, Upfal’86], the goal is to design a sparse communication network G that supports efficient, fault-tolerant protocols for interactions between all node pairs. By fault-tolerant, we mean that that even if an adversary corrupts a small fraction of vertices in G, then all but a small fraction of vertices can still communicate perfectly via the constructed protocols. Being successful to do so allows one to simulate, on a sparse graph, any fault-tolerant distributed computing task and secure multi-party computation protocols built for a complete network, with only minimal overhead in efficiency. Previous works on this problem achieved either constant-degree networks tolerating o(1) faults, constant-degree networks tolerating a constant fraction of faults via inefficient protocols (exponential work complexity), or poly-logarithmic degree networks tolerating a constant fraction of faults. We show a construction of constant-degree networks with efficient protocols (i.e., with polylogarithmic work complexity) that can tolerate a constant fraction of adversarial faults, thus solving the main open problem of Dwork et al. Our main contribution is a composition technique for communication networks, based on graph products. Our technique combines two networks tolerant to adversarial edge-faults to construct a network with a smaller degree while maintaining efficiency and fault-tolerance. We apply this composition result multiple times, using the polylogarithmic-degree edge-fault tolerant networks constructed in a recent work of [Bafna, Minzer, Vyas’24] (that are based on high-dimensional expanders) with itself, and then with the constant-degree networks (albeit with inefficient protocols) of [Upfal’92].
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quasi-Linear Size PCPs with Small Soundness from HDX</title>
<link href="https://hdl.handle.net/1721.1/164436" rel="alternate"/>
<author>
<name>Bafna, Mitali</name>
</author>
<author>
<name>Minzer, Dor</name>
</author>
<author>
<name>Vyas, Nikhil</name>
</author>
<author>
<name>Yun, Zhiwei</name>
</author>
<id>https://hdl.handle.net/1721.1/164436</id>
<updated>2026-04-14T03:20:07Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Quasi-Linear Size PCPs with Small Soundness from HDX
Bafna, Mitali; Minzer, Dor; Vyas, Nikhil; Yun, Zhiwei
We construct 2-query, quasi-linear size probabilistically checkable&#13;
proofs (PCPs) with arbitrarily small constant soundness, improving&#13;
upon Dinur’s 2-query quasi-linear size PCPs with soundness 1 −&#13;
Ω(1). As an immediate corollary, we get that under the exponential&#13;
time hypothesis, for all&#120576; &gt; 0 no approximation algorithm for 3-SAT&#13;
can obtain an approximation ratio of 7/8+&#120576; in time 2&#13;
&#119899;/log&#119862; &#119899;&#13;
, where&#13;
&#119862; is a constant depending on &#120576;. Our result builds on a recent line&#13;
of independent works by Bafna, Lifshitz and Minzer, and Dikstein,&#13;
Dinur and Lubotzky, that showed the existence of linear size direct&#13;
product testers with small soundness.&#13;
The main new ingredient in our proof is a technique that embeds&#13;
a given 2-CSP into a 2-CSP on a prescribed graph, provided that the&#13;
latter is a graph underlying a sufficiently good high-dimensional&#13;
expander (HDX). We achieve this by establishing a novel connection between PCPs and fault-tolerant distributed computing, more&#13;
precisely, to the almost-everywhere reliable transmission problem&#13;
introduced by Dwork, Peleg, Pippenger and Upfal (1986). We instantiate this connection by showing that graphs underlying HDXs&#13;
admit routing protocols that are tolerant to adversarial edge corruptions, also improving upon the state of the art constructions of&#13;
sparse edge-fault-tolerant networks in the process.&#13;
Our PCP construction requires variants of the aforementioned&#13;
direct product testers with poly-logarithmic degree. The existence&#13;
and constructability of these variants is shown in the full version.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Approximately Counting and Sampling Hamiltonian Motifs in Sublinear Time</title>
<link href="https://hdl.handle.net/1721.1/164435" rel="alternate"/>
<author>
<name>Eden, Talya</name>
</author>
<author>
<name>Levi, Reut</name>
</author>
<author>
<name>Ron, Dana</name>
</author>
<author>
<name>Rubinfeld, Ronitt</name>
</author>
<id>https://hdl.handle.net/1721.1/164435</id>
<updated>2026-04-14T03:20:20Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Approximately Counting and Sampling Hamiltonian Motifs in Sublinear Time
Eden, Talya; Levi, Reut; Ron, Dana; Rubinfeld, Ronitt
Counting small subgraphs, referred to as motifs, in large graphs is&#13;
a fundamental task in graph analysis, extensively studied across&#13;
various contexts and computational models. In the sublinear-time&#13;
regime, the relaxed problem of approximate counting has been&#13;
explored within two prominent query frameworks: the standard&#13;
model, which permits degree, neighbor, and pair queries, and the&#13;
strictly more powerful augmented model, which additionally allows&#13;
for uniform edge sampling. Currently, in the standard model, (optimal) results have been established only for approximately counting&#13;
edges, stars, and cliques, all of which have a radius of one. This&#13;
contrasts sharply with the state of affairs in the augmented model,&#13;
where algorithmic results (some of which are optimal) are known&#13;
for any input motif, leading to a disparity which we term the “scope&#13;
gap" between the two models.&#13;
In this work, we make significant progress in bridging this gap.&#13;
Our approach draws inspiration from recent advancements in the&#13;
augmented model and utilizes a framework centered on counting&#13;
by uniform sampling, thus allowing us to establish new results in&#13;
the standard model and simplify on previous results.&#13;
In particular, our first, and main, contribution is a new algorithm&#13;
in the standard model for approximately counting any Hamiltonian&#13;
motif in sublinear time, where the complexity of the algorithm&#13;
is the sum of two terms. One term equals the complexity of the&#13;
known algorithms by Assadi, Kapralov, and Khanna (ITCS 2019)&#13;
and Fichtenberger and Peng (ICALP 2020) in the (strictly stronger)&#13;
augmented model and the other is an additional, necessary, additive&#13;
overhead.&#13;
Our second contribution is a variant of our algorithm that enables nearly uniform sampling of these motifs, a capability previously limited in the standard model to edges and cliques. Our&#13;
third contribution is to introduce even simpler algorithms for stars&#13;
and cliques by exploiting their radius-one property. As a result, we&#13;
simplify all previously known algorithms in the standard model for&#13;
stars (Gonen, Ron, Shavitt (SODA 2010)), triangles (Eden, Levi, Ron Seshadhri (FOCS 2015)) and cliques (Eden, Ron, Seshadri (STOC&#13;
2018)).
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sandwiching Random Geometric Graphs and Erdos-Renyi with Applications: Sharp Thresholds, Robust Testing, and Enumeration</title>
<link href="https://hdl.handle.net/1721.1/164434" rel="alternate"/>
<author>
<name>Bangachev, Kiril</name>
</author>
<author>
<name>Bresler, Guy</name>
</author>
<id>https://hdl.handle.net/1721.1/164434</id>
<updated>2026-04-14T03:37:55Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Sandwiching Random Geometric Graphs and Erdos-Renyi with Applications: Sharp Thresholds, Robust Testing, and Enumeration
Bangachev, Kiril; Bresler, Guy
The distribution RGG(n,Sd−1,p) is formed by sampling independent vectors {Vi}i = 1n uniformly on Sd−1 and placing an edge between pairs of vertices i and j for which ⟨ Vi,Vj⟩ ≥ τdp, where τdp is such that the expected density is p. Our main result is a poly-time implementable coupling between Erdős-Rényi and RGG such that G(n,p(1 − O(√np/d)))⊆ RGG(n,Sd−1,p)⊆ G(n,p(1 + O(√np/d))) edgewise with high probability when d≫ np. We apply the result to: 1) Sharp Thresholds: We show that for any monotone property having a sharp threshold with respect to the Erdős-Rényi distribution and critical probability pnc, random geometric graphs also exhibit a sharp threshold when d≫ npnc, thus partially answering a question of Perkins. 2) Robust Testing: The coupling shows that testing between G(n,p) and RGG(n,Sd−1,p) with є n2p adversarially corrupted edges for any constant є&gt;0 is information-theoretically impossible when d≫ np. We match this lower bound with an efficient (constant degree SoS) spectral refutation algorithm when d≪ np. 3) Enumeration: We show that the number of geometric graphs in dimension d is at least exp(dnlog−7n), recovering (up to the log factors) the sharp result of Sauermann.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sample-Optimal Private Regression in Polynomial Time</title>
<link href="https://hdl.handle.net/1721.1/164433" rel="alternate"/>
<author>
<name>Anderson, Prashanti</name>
</author>
<author>
<name>Bakshi, Ainesh</name>
</author>
<author>
<name>Majid, Mahbod</name>
</author>
<author>
<name>Tiegel, Stefan</name>
</author>
<id>https://hdl.handle.net/1721.1/164433</id>
<updated>2026-04-14T03:20:14Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Sample-Optimal Private Regression in Polynomial Time
Anderson, Prashanti; Bakshi, Ainesh; Majid, Mahbod; Tiegel, Stefan
We consider the task of privately obtaining prediction error guarantees in ordinary least-squares regression problems with Gaussian covariates (with unknown covariance structure). We provide the first sample-optimal polynomial time algorithm for this task under both pure and approximate differential privacy. We show that any improvement to the sample complexity of our algorithm would violate either statistical-query or information-theoretic lower bounds. Additionally, our algorithm is robust to a small fraction of arbitrary outliers and achieves optimal error rates as a function of the fraction of outliers. In contrast, all prior efficient algorithms either incurred sample complexities with sub-optimal dimension dependence, scaling with the condition number of the covariates, or obtained a polynomially worse dependence on the privacy parameters.&#13;
Our technical contributions are two-fold: first, we leverage resilience guarantees of Gaussians within the sum-of-squares framework. As a consequence, we obtain efficient sum-of-squares algorithms for regression with optimal robustness rates and sample complexity. Second, we generalize the recent robustness-to-privacy framework of Hopkins, Kamath, Majid, and Narayanan to account for the geometry induced by the covariance of the input samples. This framework crucially relies on the robust estimators to be sum-of-squares algorithms, and combining the two steps yields a sample-optimal private regression algorithm. We believe our techniques are of independent interest, and we demonstrate this by obtaining an efficient algorithm for covariance-aware mean estimation, with an optimal dependence on the privacy parameters.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Faster Weighted and Unweighted Tree Edit Distance and APSP Equivalence</title>
<link href="https://hdl.handle.net/1721.1/164432" rel="alternate"/>
<author>
<name>Nogler, Jakob</name>
</author>
<author>
<name>Polak, Adam</name>
</author>
<author>
<name>Saha, Barna</name>
</author>
<author>
<name>Vassilevska Williams, Virginia</name>
</author>
<author>
<name>Xu, Yinzhan</name>
</author>
<author>
<name>Ye, Christopher</name>
</author>
<id>https://hdl.handle.net/1721.1/164432</id>
<updated>2026-04-14T03:20:09Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Faster Weighted and Unweighted Tree Edit Distance and APSP Equivalence
Nogler, Jakob; Polak, Adam; Saha, Barna; Vassilevska Williams, Virginia; Xu, Yinzhan; Ye, Christopher
The tree edit distance (TED) between two rooted ordered trees with n nodes labeled from an alphabet Σ is the minimum cost of transforming one tree into the other by a sequence of valid operations consisting of insertions, deletions and relabeling of nodes. The tree edit distance is a well-known generalization of string edit distance and has been studied since the 1970s. Its running time has seen steady improvements starting with an O(n6) algorithm [Tai, J.ACM 1979], improved to O(n4) [Shasha, Zhang, SICOMP 1989] and to O(n3logn) [Klein, ESA 1998], and culminating in an O(n3) algorithm [Demaine, Mozes, Rossman, Weimann, ACM TALG 2010]. The latter is known to be optimal for any dynamic programming based algorithm that falls under a certain decomposition framework that captures all known sub-n4 time algorithms. Fine-grained complexity casts further light onto this hardness showing that a truly subcubic time algorithm for TED implies a truly subcubic time algorithm for All-Pairs Shortest Paths (APSP) [Bringmann, Gawrychowski, Mozes, Weimann, ACM TALG 2020]. Therefore, under the popular APSP hypothesis, a truly subcubic time algorithm for TED cannot exist. However, unlike many problems in fine-grained complexity for which conditional hardness based on APSP also comes with equivalence to APSP, whether TED can be reduced to APSP has remained unknown.&#13;
In this paper, we resolve this. Not only we show that TED is fine-grained equivalent to APSP, our reduction is tight enough, so that combined with the fastest APSP algorithm to-date [Williams, SICOMP 2018] it gives the first ever subcubic time algorithm for TED running in n3/2Ω(√logn) time.&#13;
We also consider the unweighted tree edit distance problem in which the cost of each edit (insertion, deletion, and relabeling) is one. For unweighted TED, a truly subcubic algorithm is known due to Mao [Mao, FOCS 2022], and later improved slightly by Dürr [Dürr, IPL 2023] to run in O(n2.9148) time. Since their algorithm uses bounded monotone min-plus product as a crucial subroutine, and the best running time for this product is Õ(n3+ω/2)≤ O(n2.6857) (where ω is the exponent of fast matrix multiplication), the much higher running time of unweighted TED remained unsatisfactory. In this work, we close this gap and give an algorithm for unweighted TED that runs in Õ(n3+ω/2) time.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Structure of Catalytic Space: Capturing Randomness and Time via Compression</title>
<link href="https://hdl.handle.net/1721.1/164431" rel="alternate"/>
<author>
<name>Cook, James</name>
</author>
<author>
<name>Li, Jiatu</name>
</author>
<author>
<name>Mertz, Ian</name>
</author>
<author>
<name>Pyne, Edward</name>
</author>
<id>https://hdl.handle.net/1721.1/164431</id>
<updated>2026-04-14T03:20:11Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">The Structure of Catalytic Space: Capturing Randomness and Time via Compression
Cook, James; Li, Jiatu; Mertz, Ian; Pyne, Edward
In the catalytic logspace (CL) model of (Buhrman et. al. STOC 2013), we are given a small work tape, and a larger catalytic tape that has an arbitrary initial configuration. We may edit this tape, but it must be exactly restored to its initial configuration at the completion of the computation. This model is of interest from a complexity-theoretic perspective as it gains surprising power over traditional space. However, many fundamental structural questions remain open.&#13;
We substantially advance the understanding of the structure of CL, addressing several questions raised in prior work. Our main results are as follows.&#13;
1: We unconditionally derandomize catalytic logspace: CBPL = CL.&#13;
2: We show time and catalytic space bounds can be achieved separately if and only if they can be achieved simultaneously: any problem in both CL and P can be solved in polynomial time-bounded CL.&#13;
3: We characterize deterministic catalytic space by the intersection of randomness and time: CL is equivalent to polytime-bounded, zero-error randomized CL.&#13;
Our results center around the compress--or--random framework.&#13;
For the second result, we introduce a simple yet novel compress--or--compute algorithm which, for any catalytic tape, either compresses the tape or quickly and successfully computes the function at hand. For our first result, we further introduce a compress--or--compress--or--random algorithm that combines runtime compression with a second compress--or--random algorithm, building on recent work on distinguish-to-predict transformations and pseudorandom generators with small-space deterministic reconstruction.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rounding Large Independent Sets on Expanders</title>
<link href="https://hdl.handle.net/1721.1/164430" rel="alternate"/>
<author>
<name>Bafna, Mitali</name>
</author>
<author>
<name>Hsieh, Jun-Ting</name>
</author>
<author>
<name>Kothari, Pravesh K.</name>
</author>
<id>https://hdl.handle.net/1721.1/164430</id>
<updated>2026-04-14T03:20:19Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Rounding Large Independent Sets on Expanders
Bafna, Mitali; Hsieh, Jun-Ting; Kothari, Pravesh K.
We develop a new approach for approximating large independent sets when the input graph is a one-sided spectral expander - that is, the uniform random walk matrix of the graph has its second eigenvalue bounded away from 1. Consequently, we obtain a polynomial time algorithm to find linear-sized independent sets in one-sided expanders that are almost 3-colorable or are promised to contain an independent set of size (1/2−є)n. Our second result above can be refined to require only a weaker vertex expansion property with an efficient certificate. In a surprising contrast to our algorithmic result, we observe that the analogous task of finding a linear-sized independent set in almost 4-colorable one-sided expanders (even when the second eigenvalue is on(1)) is NP-hard, assuming the Unique Games Conjecture.&#13;
All prior algorithms that beat the worst-case guarantees for this problem rely on bottom eigenspace enumeration techniques (following the classical spectral methods of Alon and Kahale) and require two-sided expansion, meaning a bounded number of negative eigenvalues of magnitude Ω(1). Such techniques naturally extend to almost k-colorable graphs for any constant k, in contrast to analogous guarantees on one-sided expanders, which are Unique Games-hard to achieve for k ≥ 4.&#13;
Our rounding scheme builds on the method of simulating multiple samples from a pseudo-distribution introduced in Bafna et. al. for rounding Unique Games instances. The key to our analysis is a new clustering property of large independent sets in expanding graphs - every large independent set has a larger-than-expected intersection with some member of a small list - and its formalization in the low-degree sum-of-squares proof system.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Universal SNARGs for NP from Proofs of Correctness</title>
<link href="https://hdl.handle.net/1721.1/164429" rel="alternate"/>
<author>
<name>Jin, Zhengzhong</name>
</author>
<author>
<name>Kalai, Yael Tauman</name>
</author>
<author>
<name>Lombardi, Alex</name>
</author>
<author>
<name>Mathialagan, Surya</name>
</author>
<id>https://hdl.handle.net/1721.1/164429</id>
<updated>2026-04-14T03:20:00Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Universal SNARGs for NP from Proofs of Correctness
Jin, Zhengzhong; Kalai, Yael Tauman; Lombardi, Alex; Mathialagan, Surya
We give new constructions of succinct non-interactive arguments (SNARGs) for NP in the settings of both non-adaptive and adaptive soundness.&#13;
Our construction of non-adaptive SNARG is universal assuming the security of a (leveled or unleveled) fully homomorphic encryption (FHE) scheme as well as a batch argument (BARG) scheme. Specifically, for any choice of parameters ℓ and L, we construct a candidate SNARG scheme for any NP language L with the following properties: (i) the proof length is ℓ· poly(λ), (ii) the common reference string crs has length L· poly(λ), and (iii) the setup is transparent (no private randomness).&#13;
We prove that this SNARG has non-adaptive soundness assuming the existence of any SNARG where the proof size is ℓ, the crs size is L, and there is a size L Extended Frege (EF) proof of completeness for the SNARG.&#13;
Moreover, we can relax the underlying SNARG to be any 2-message privately verifiable argument where the first message is of length L and the second message is of length ℓ. This yields new SNARG constructions based on any “EF-friendly” designated-verifier SNARG or witness encryption scheme. We emphasize that our SNARG is universal in the sense that it does not depend on the argument system.&#13;
We show several new implications of this construction that do not reference proof complexity: (1) a non-adaptive SNARG for NP with transparent crs from LWE under the evasive LWE heuristic. This gives a candidate lattice-based SNARG for NP. (2) a non-adaptive SNARG for NP with transparent crs assuming the (non-explicit) existence of any iO and LWE. (3) a non-adaptive SNARG for NP with a short and transparent (i.e., uniform) crs assuming LWE, FHE and the (non-explicit) existence of any hash function that makes Micali’s SNARG construction sound. (4) a non-adaptive SNARG for languages such as QR and DCR assuming only LWE.&#13;
In the setting of adaptive soundness, we show how to convert any designated verifier SNARG into publicly verifiable SNARG, assuming the underlying designated verifier SNARG has an EF proof of completeness. As a corollary, we construct an adaptive SNARG for UP with a transparent crs assuming subexponential LWE under the evasive LWE heuristic.&#13;
We prove our results by extending the encrypt-hash-and-BARG paradigm of [Jin-Kalai-Lombardi-Vaikuntanathan, STOC ’24].
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Medium is the Message: How Non-Clinical Information Shapes Clinical Decisions in LLMs</title>
<link href="https://hdl.handle.net/1721.1/164428" rel="alternate"/>
<author>
<name>Gourabathina, Abinitha</name>
</author>
<author>
<name>Gerych, Walter</name>
</author>
<author>
<name>Pan, Eileen</name>
</author>
<author>
<name>Ghassemi, Marzyeh</name>
</author>
<id>https://hdl.handle.net/1721.1/164428</id>
<updated>2026-04-14T03:20:26Z</updated>
<published>2025-06-23T00:00:00Z</published>
<summary type="text">The Medium is the Message: How Non-Clinical Information Shapes Clinical Decisions in LLMs
Gourabathina, Abinitha; Gerych, Walter; Pan, Eileen; Ghassemi, Marzyeh
The integration of large language models (LLMs) into clinical diagnostics necessitates a careful understanding of how clinically irrelevant aspects of user inputs directly influence generated treatment recommendations and, consequently, clinical outcomes for end-users. Building on prior research that examines the impact of demographic attributes on clinical LLM reasoning, this study explores how non-clinically relevant attributes shape clinical decision-making by LLMs. Through the perturbation of patient messages, we evaluate whether LLM behavior remains consistent, accurate, and unbiased when non-clinical information is altered. These perturbations assess the brittleness of clinical LLM reasoning by replicating structural errors that may occur during electronic data processing patient questions and simulating interactions between patient-AI systems in diverse, vulnerable patient groups. Our findings reveal notable inconsistencies in LLM treatment recommendations and significant degradation of clinical accuracy in ways that reduce care allocation to patients. Additionally, there are significant disparities in treatment recommendations between gender subgroups as well as between model-inferred gender subgroups. We also apply our perturbation framework to a conversational clinical dataset to find that even in conversation, LLM clinical accuracy decreases post-perturbation, and disparities exist in how perturbations impact gender subgroups. By analyzing LLM outputs in response to realistic yet modified clinical contexts, our work deepens understanding of the sensitivity, inaccuracy, and biases inherent in medical LLMs, offering critical insights for the deployment of patient-AI systems.
FAccT ’25, Athens, Greece
</summary>
<dc:date>2025-06-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>High-Performance Mixed-Precision Matrix Multiplication via Tile-Centric Design on Modern Architectures</title>
<link href="https://hdl.handle.net/1721.1/164427" rel="alternate"/>
<author>
<name>Zhang, Qiao</name>
</author>
<author>
<name>Alomairy, Rabab</name>
</author>
<author>
<name>Wang, Dali</name>
</author>
<author>
<name>Gu, Zhuowei</name>
</author>
<author>
<name>Cao, Qinglei</name>
</author>
<id>https://hdl.handle.net/1721.1/164427</id>
<updated>2025-12-23T03:10:24Z</updated>
<published>2025-12-20T00:00:00Z</published>
<summary type="text">High-Performance Mixed-Precision Matrix Multiplication via Tile-Centric Design on Modern Architectures
Zhang, Qiao; Alomairy, Rabab; Wang, Dali; Gu, Zhuowei; Cao, Qinglei
General Matrix Multiplication (GEMM) is a critical operation underpinning a wide range of applications in high-performance computing (HPC) and artificial intelligence (AI). The emergence of hardware optimized for low-precision arithmetic necessitates a reevaluation of numerical algorithms to leverage mixed-precision computations, achieving improved performance and energy efficiency. This research presents an adaptive mixed-precision GEMM framework that enables support for various precision formats at fine-grained tile and block levels, offering a reliable foundation for trustworthy mixed-precision computations. Furthermore, we leverage the PaRSEC runtime system to effectively balance workloads across diverse architectures. The performance exhibits strong scalability across both homogeneous platforms (Intel CPU-based systems and the ARM CPU-based Fugaku supercomputer) and heterogeneous systems (Nvidia V100, A100, and H100 GPU-based platforms, as well as the AMD GPU-based Frontier supercomputer). This work aims to improve computational efficiency and accuracy by bridging algorithmic innovations with hardware capabilities, fostering transformative advancements across a wide range of applications.
</summary>
<dc:date>2025-12-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Search for t-channel scalar and vector leptoquark exchange in the high-mass dimuon and dielectron spectra in proton-proton collisions at √s = 13 TeV</title>
<link href="https://hdl.handle.net/1721.1/164426" rel="alternate"/>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Benato, L.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<author>
<name>Schieck, J.</name>
</author>
<author>
<name>Schöfbeck, R.</name>
</author>
<id>https://hdl.handle.net/1721.1/164426</id>
<updated>2026-04-14T03:37:31Z</updated>
<published>2025-12-09T00:00:00Z</published>
<summary type="text">Search for t-channel scalar and vector leptoquark exchange in the high-mass dimuon and dielectron spectra in proton-proton collisions at √s = 13 TeV
Hayrapetyan, A.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Benato, L.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.; Schieck, J.; Schöfbeck, R.
A search for t-channel exchange of leptoquarks (LQs) is performed in dimuon&#13;
and dielectron spectra using proton-proton collision data collected at √&#13;
s = 13 TeV with&#13;
the CMS detector at the CERN LHC. The data correspond to an integrated luminosity of&#13;
138 fb−1&#13;
. Eight scenarios are considered, in which up or down quarks couple to muons or&#13;
electrons via a scalar or vector LQ exchange, for dilepton invariant masses above 500 GeV.&#13;
The LQ masses are probed up to 5 TeV, beyond a regime probed by previous pair-production&#13;
and single-production searches. The differential distributions of dilepton events are fit to&#13;
templates that model the nonresonant LQ exchange and various standard model background&#13;
processes. Limits are set on LQ-fermion coupling strengths for scalar and vector LQ masses&#13;
in the 1–5 TeV range at 95% confidence level, establishing stringent limits on first- and&#13;
second-generation LQs.
</summary>
<dc:date>2025-12-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Search for charged-lepton flavour violation in top quark interactions with an up-type quark, a muon, and a τ lepton in proton-proton collisions at √s = 13 TeV</title>
<link href="https://hdl.handle.net/1721.1/164425" rel="alternate"/>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Benato, L.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<author>
<name>Schieck, J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164425</id>
<updated>2026-04-14T03:37:30Z</updated>
<published>2025-12-10T00:00:00Z</published>
<summary type="text">Search for charged-lepton flavour violation in top quark interactions with an up-type quark, a muon, and a τ lepton in proton-proton collisions at √s = 13 TeV
Hayrapetyan, A.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Benato, L.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.; Schieck, J.
A search for charged-lepton flavour violation (CLFV) in top quark (t) production&#13;
and decay is presented. The search uses proton-proton collision data corresponding to 138 fb−1&#13;
collected with the CMS experiment at √&#13;
s = 13 TeV. The signal consists of the production&#13;
of a single top quark via a CLFV interaction or top quark pair production followed by a&#13;
CLFV decay. The analysis selects events containing a hadronically decaying τ lepton and&#13;
a muon of opposite electric charge, as well as at least three jets, one of which is identified&#13;
as originating from the fragmentation of a bottom quark. Machine learning classification&#13;
techniques are used to distinguish signal from standard model background events. The results&#13;
of this search are consistent with the standard model expectations. The upper limits at 95%&#13;
confidence level on the branching fraction B for CLFV top quark decays to a muon, a τ&#13;
lepton, and an up or a charm quark are set at B(t → µτu) &lt; (0.04, 0.08, and 0.12) × 10−6&#13;
,&#13;
and B(t → µτ c) &lt; (0.81, 1.71, and 2.05) × 10−6&#13;
for scalar, vector, and tensor-like operators,&#13;
respectively.
</summary>
<dc:date>2025-12-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Anyon delocalization transitions out of a disordered fractional quantum anomalous Hall insulator</title>
<link href="https://hdl.handle.net/1721.1/164424" rel="alternate"/>
<author>
<name>Shi, Zhengyan Darius</name>
</author>
<author>
<name>Todadri, Senthil</name>
</author>
<id>https://hdl.handle.net/1721.1/164424</id>
<updated>2026-04-14T03:38:06Z</updated>
<published>2025-12-19T00:00:00Z</published>
<summary type="text">Anyon delocalization transitions out of a disordered fractional quantum anomalous Hall insulator
Shi, Zhengyan Darius; Todadri, Senthil
Motivated by the experimental discovery of the fractional quantum anomalous Hall&#13;
effect, we develop a theory of doping-induced transitions out of the  = 2/3 lattice&#13;
Jain state in the presence of quenched disorder. We show that disorder strongly&#13;
affects the evolution into the conducting phases described in our previous work.&#13;
The delocalization of charge 2/3 anyons leads to a chiral superconductor through&#13;
a direct second-order transition for a smooth random potential with long-wavelength&#13;
modulations. The longitudinal resistance has a universal peak at the associated quantum&#13;
critical point. Close to the transition, we show that the superconducting ground state&#13;
is an “Anomalous Vortex Glass” stabilized in the absence of an external magnetic&#13;
field. For short-wavelength disorder, this transition generically splits into three distinct&#13;
ones with intermediate insulating topological phases. If instead, the charge 1/3 anyon&#13;
delocalizes, then at low doping the resulting phase is a Reentrant Integer Quantum&#13;
Hall state with xy = h/e&#13;
2&#13;
. At higher doping this undergoes a second transition to a&#13;
Fermi liquid metal. We show that this framework provides a plausible explanation for&#13;
the complex phase diagram recently observed in twisted MoTe2 near  = 2/3 and&#13;
discuss future experiments that can test our theory in more detail.
</summary>
<dc:date>2025-12-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>From Data to Transformative Change: Designing Interactive Systems for Citizen Science Empowerment</title>
<link href="https://hdl.handle.net/1721.1/164423" rel="alternate"/>
<author>
<name>Prandi, Catia</name>
</author>
<author>
<name>Herodotou, Christothea</name>
</author>
<author>
<name>Dionisio, Mara</name>
</author>
<author>
<name>Reeves, Neal</name>
</author>
<author>
<name>Reitsma, Lizette</name>
</author>
<author>
<name>Mora, Simone</name>
</author>
<id>https://hdl.handle.net/1721.1/164423</id>
<updated>2025-12-20T03:09:51Z</updated>
<published>2025-07-05T00:00:00Z</published>
<summary type="text">From Data to Transformative Change: Designing Interactive Systems for Citizen Science Empowerment
Prandi, Catia; Herodotou, Christothea; Dionisio, Mara; Reeves, Neal; Reitsma, Lizette; Mora, Simone
Citizen Science (CS) is a research approach in which scientists and everyday people collaborate to address a research problem. Advancements in digital technologies have significantly expanded the reach of Citizen Science by enabling large-scale data collection and collaboration. In addition to its scientific benefits, citizen science enhances participants’ science literacy, fosters public engagement, and promotes collaborative problem-solving. Despite this being true, we believe that the true potential of CS has not yet been fully explored as a collaborative practice for transformative change. With this in mind, we planned a one-day workshop as a forum for critical discussions and reflections on the role of HCI researchers, designers, and practitioners in designing CS-empowered interactive systems for increasing awareness about social good and societal issues and promoting concrete actions and behavioural change, from data to sustainable futures. Participants will have the possibility to reflect on and discuss the main open challenges still affecting the design of CS-empowered interactive systems, and to prototype, exploiting data physicalization and co-design, solutions that focus on a specific real-world challenge as presented by experts of the Madeira Island that offers a unique ecosystem to spark reflections on the interplay between sustainability, technology and CS.
DIS ’25 Companion, Funchal, Portugal
</summary>
<dc:date>2025-07-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Lost in Transplantation: Characterizing Racial Gaps in Physician Organ Offer Acceptance</title>
<link href="https://hdl.handle.net/1721.1/164422" rel="alternate"/>
<author>
<name>Adam, Hammaad</name>
</author>
<author>
<name>Bermea, Rene</name>
</author>
<author>
<name>Yang, Ming Ying</name>
</author>
<author>
<name>Celi, Leo Anthony</name>
</author>
<author>
<name>Ghassemi, Marzyeh</name>
</author>
<id>https://hdl.handle.net/1721.1/164422</id>
<updated>2025-12-20T03:09:52Z</updated>
<published>2025-06-23T00:00:00Z</published>
<summary type="text">Lost in Transplantation: Characterizing Racial Gaps in Physician Organ Offer Acceptance
Adam, Hammaad; Bermea, Rene; Yang, Ming Ying; Celi, Leo Anthony; Ghassemi, Marzyeh
There are known racial disparities in the organ transplant allocation system in the United States. While recent research has focused on designing scores and matching algorithms for organ allocation, prior work has yet to study how transplant center physician decisions on offer acceptance—the final step in the allocation process—contribute to the observed disparities. In this paper, we use data from the Scientific Registry of Transplant Recipients to examine the role of candidate race in the acceptance of heart, liver, and lung transplant offers. We find that Black race was associated with significantly lower odds of offer acceptance for livers and lungs. Further, existing allocation scores such as MELD and LAS did not account for clinical factors that made Black patients harder to match. Our analysis also revealed that donor candidate race-match was associated with significantly higher odds of offer acceptance for hearts, livers, and lungs. Finally, we found that rejecting an offer was associated with lower survival times for all three organs. Our findings demonstrate the additional barriers that Black patients face in accessing organ transplants and the consequences of these barriers on patient survival. Overall, our work highlights the limitations of technical solutions to socio-technical problems; new allocation scores and other algorithmic updates will not improve equity if they do not explicitly account for gaps in the ensuing human decisions.
FAccT ’25, Athens, Greece
</summary>
<dc:date>2025-06-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Coboundary Expansion of Coset Complexes</title>
<link href="https://hdl.handle.net/1721.1/164421" rel="alternate"/>
<author>
<name>Kaufman, Tali</name>
</author>
<author>
<name>Oppenheim, Izhar</name>
</author>
<author>
<name>Weinberger, Shmuel</name>
</author>
<id>https://hdl.handle.net/1721.1/164421</id>
<updated>2025-12-20T03:09:54Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">Coboundary Expansion of Coset Complexes
Kaufman, Tali; Oppenheim, Izhar; Weinberger, Shmuel
Coboundary expansion is a high dimensional generalization of the Cheeger constant to simplicial complexes. Originally, this notion was motivated by the fact that it implies topological expansion, but nowadays a significant part of the motivation stems from its deep connection to problems in theoretical computer science such as list agreement expansion and agreement expansion in the low soundness regime. In this paper, we prove coboundary expansion with non-Abelian coefficients for the coset complex construction of Kaufman and Oppenheim. Our proof uses a novel global argument, as opposed to the local-to-global arguments that are used to prove cosystolic expansion.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Disclosure without Engagement: An Empirical Review of Positionality Statements at FAccT</title>
<link href="https://hdl.handle.net/1721.1/164420" rel="alternate"/>
<author>
<name>Schroeder, Hope</name>
</author>
<author>
<name>Pareek, Akshansh</name>
</author>
<author>
<name>Barocas, Solon</name>
</author>
<id>https://hdl.handle.net/1721.1/164420</id>
<updated>2025-12-20T03:09:55Z</updated>
<published>2025-06-23T00:00:00Z</published>
<summary type="text">Disclosure without Engagement: An Empirical Review of Positionality Statements at FAccT
Schroeder, Hope; Pareek, Akshansh; Barocas, Solon
Positionality statements have become more common in engineering fields in recent years, despite ongoing debates across many fields about the merits of the practice. In 2024, the Program Chairs of FAccT recommended that authors include positionality statements with their paper submissions, dramatically increasing their use at the conference. In this paper, we analyze all positionality statements at FAccT from 2018 to 2024, highlighting the different aspects of identity commonly disclosed by authors and the degree to which authors explore the potential impact of these aspects of their positionality on their research. While we encountered and highlight a number of thoughtful positionality statements, we also identified and describe several concerning trends, including patterns of identity disclosure without discussion of corresponding impacts, a notable lack of reflection on the potential impacts of industry affiliation, and cases where identity is invoked to excuse what are really methodological choices, among others. We raise particular concerns about the possibility that disclosure without engagement may cause readers to rely on stereotypes to make guesses about the perspectives that individuals from certain groups bring to their work. We conclude by considering potential mechanisms for encouraging reflexivity in the FAccT community, with a focus on setting policies that protect researchers from risks, supporting researchers from backgrounds without existing traditions of reflexive practice, and empirically evaluating the efficacy of interventions designed to foster reflexivity.
FAccT ’25, Athens, Greece
</summary>
<dc:date>2025-06-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>LEAD: Towards Learning-Based Equity-Aware Decarbonization in Ridesharing Platforms</title>
<link href="https://hdl.handle.net/1721.1/164419" rel="alternate"/>
<author>
<name>Sahebdel, Mahsa</name>
</author>
<author>
<name>Zeynali, Ali</name>
</author>
<author>
<name>Bashir, Noman</name>
</author>
<author>
<name>Shenoy, Prashant</name>
</author>
<author>
<name>Hajiesmaili, Mohammad</name>
</author>
<id>https://hdl.handle.net/1721.1/164419</id>
<updated>2025-12-20T03:09:43Z</updated>
<published>2025-06-23T00:00:00Z</published>
<summary type="text">LEAD: Towards Learning-Based Equity-Aware Decarbonization in Ridesharing Platforms
Sahebdel, Mahsa; Zeynali, Ali; Bashir, Noman; Shenoy, Prashant; Hajiesmaili, Mohammad
Ridesharing platforms such as Uber, Lyft, and DiDi have grown in popularity due to their on-demand availability, ease of use, and commute cost reductions, among other benefits. However, not all ridesharing promises have panned out. Recent studies demonstrate that the expected drop in traffic congestion and reduction in greenhouse gas (GHG) emissions have not materialized. This is primarily due to the substantial distances traveled by the ridesharing vehicles without passengers between rides, known as deadhead miles. Recent work has focused on reducing the impact of deadhead miles while considering additional metrics such as rider waiting time, GHG emissions from deadhead miles, or driver earnings. However, most prior studies consider these environmental and equity-based metrics individually despite them being interrelated. In this paper, we propose a Learning-based Equity-Aware Decarabonization approach, LEAD, for ridesharing platforms. LEAD targets minimizing emissions while ensuring that the driver’s utility, defined as the difference between the trip distance and the deadhead miles, is fairly distributed. LEAD uses reinforcement learning to match riders with drivers based on the expected future utility of drivers and the expected carbon emissions of the platform without increasing the rider waiting times. Extensive experiments based on a real-world ridesharing dataset show that LEAD improves the defined notion of fairness by 150% when compared to emission-aware ride-assignment and reduces emissions by 14.6% while ensuring fairness within 28–52% of the fairness-focused baseline. It also reduces the rider wait time, by at least 32.1%, compared to a fairness-focused baseline.
FAccT ’25, Athens, Greece
</summary>
<dc:date>2025-06-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>LuciEntry: Towards Understanding the Design of Lucid Dream Induction</title>
<link href="https://hdl.handle.net/1721.1/164418" rel="alternate"/>
<author>
<name>Wang, Po-Yao (Cosmos)</name>
</author>
<author>
<name>Fang, Xiao Zoe</name>
</author>
<author>
<name>Ducos, Gabriel</name>
</author>
<author>
<name>Lee, Nathaniel Yung Xiang</name>
</author>
<author>
<name>Loose, Antony</name>
</author>
<author>
<name>Rajesh, Rohit</name>
</author>
<author>
<name>Botheju, Nethmini</name>
</author>
<author>
<name>Chen, Eric</name>
</author>
<author>
<name>Montoya, Maria</name>
</author>
<author>
<name>Kitson, Alexandra</name>
</author>
<author>
<name>Konkoly, Karen</name>
</author>
<author>
<name>Sagi, Rohan</name>
</author>
<author>
<name>Patibanda, Rakesh</name>
</author>
<author>
<name>Whitmore, Nathan</name>
</author>
<author>
<name>Jafarzadeh Esfahani, Mahdad</name>
</author>
<author>
<name>Deng, Jialin</name>
</author>
<author>
<name>Bu, Jiajun</name>
</author>
<author>
<name>Dresler, Martin</name>
</author>
<author>
<name>Elvitigala, Don Samitha</name>
</author>
<author>
<name>Semertzidis, Nathan</name>
</author>
<author>
<name>Mueller, Florian</name>
</author>
<id>https://hdl.handle.net/1721.1/164418</id>
<updated>2025-12-19T05:31:15Z</updated>
<published>2025-07-04T00:00:00Z</published>
<summary type="text">LuciEntry: Towards Understanding the Design of Lucid Dream Induction
Wang, Po-Yao (Cosmos); Fang, Xiao Zoe; Ducos, Gabriel; Lee, Nathaniel Yung Xiang; Loose, Antony; Rajesh, Rohit; Botheju, Nethmini; Chen, Eric; Montoya, Maria; Kitson, Alexandra; Konkoly, Karen; Sagi, Rohan; Patibanda, Rakesh; Whitmore, Nathan; Jafarzadeh Esfahani, Mahdad; Deng, Jialin; Bu, Jiajun; Dresler, Martin; Elvitigala, Don Samitha; Semertzidis, Nathan; Mueller, Florian
Lucid dreaming, a state in which people become aware that they are dreaming, is known for its many mental and physical health benefits. However, most lucid dream induction techniques, such as reality testing, require significant time and effort to master, creating a barrier for people seeking these experiences. We designed LuciEntry, a portable interactive prototype aimed at helping people induce lucid dreaming through well-timed visual and auditory cues. We conducted a lab and a field study to understand LuciEntry’s user experience. The interview data allowed us to identify three themes. Building on these findings and our design practice, we derived seven considerations to guide the design of future lucid dream systems. Ultimately, this work aims to inspire further research into interactive technologies for altered states of consciousness.
DIS ’25, Funchal, Portugal
</summary>
<dc:date>2025-07-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Reality of AI and Biorisk</title>
<link href="https://hdl.handle.net/1721.1/164417" rel="alternate"/>
<author>
<name>Peppin, Aidan</name>
</author>
<author>
<name>Reuel, Anka</name>
</author>
<author>
<name>Casper, Stephen</name>
</author>
<author>
<name>Jones, Elliot</name>
</author>
<author>
<name>Strait, Andrew</name>
</author>
<author>
<name>Anwar, Usman</name>
</author>
<author>
<name>Agrawal, Anurag</name>
</author>
<author>
<name>Kapoor, Sayash</name>
</author>
<author>
<name>Koyejo, Sanmi</name>
</author>
<author>
<name>Pellat, Marie</name>
</author>
<author>
<name>Bommasani, Rishi</name>
</author>
<author>
<name>Frosst, Nick</name>
</author>
<author>
<name>Hooker, Sara</name>
</author>
<id>https://hdl.handle.net/1721.1/164417</id>
<updated>2025-12-19T05:31:08Z</updated>
<published>2025-06-23T00:00:00Z</published>
<summary type="text">The Reality of AI and Biorisk
Peppin, Aidan; Reuel, Anka; Casper, Stephen; Jones, Elliot; Strait, Andrew; Anwar, Usman; Agrawal, Anurag; Kapoor, Sayash; Koyejo, Sanmi; Pellat, Marie; Bommasani, Rishi; Frosst, Nick; Hooker, Sara
To accurately and confidently answer the question “could an AI model or system increase biorisk”, it is necessary to have both a sound theoretical threat model for how AI models or systems could increase biorisk and a robust method for testing that threat model. This paper provides an analysis of existing available research surrounding two AI and biorisk threat models: 1) access to information and planning via large language models (LLMs), and 2) the use of AI-enabled biological tools (BTs) in synthesizing novel biological artifacts. We find that existing studies around AI-related biorisk are nascent, often speculative in nature, or limited in terms of their methodological maturity and transparency. The available literature suggests that current LLMs and BTs do not pose an immediate risk, and more work is needed to develop rigorous approaches to understanding how future models could increase biorisks. We end with recommendations about how empirical work can be expanded to more precisely target biorisk and ensure rigor and validity of findings.
FAccT ’25, Athens, Greece
</summary>
<dc:date>2025-06-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>SoS Certifiability of Subgaussian Distributions and Its Algorithmic Applications</title>
<link href="https://hdl.handle.net/1721.1/164416" rel="alternate"/>
<author>
<name>Diakonikolas, Ilias</name>
</author>
<author>
<name>Hopkins, Samuel</name>
</author>
<author>
<name>Pensia, Ankit</name>
</author>
<author>
<name>Tiegel, Stefan</name>
</author>
<id>https://hdl.handle.net/1721.1/164416</id>
<updated>2025-12-19T05:31:17Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">SoS Certifiability of Subgaussian Distributions and Its Algorithmic Applications
Diakonikolas, Ilias; Hopkins, Samuel; Pensia, Ankit; Tiegel, Stefan
We prove that there is a universal constant C&gt;0 so that for every d ∈ ℕ, every centered subgaussian distribution D on ℝd, and every even p ∈ ℕ, the d-variate polynomial (Cp)p/2 · ||v||2p − EX ∼ D ⟨ v,X⟩p is a sum of square polynomials. This establishes that every subgaussian distribution is SoS-certifiably subgaussian—a condition that yields efficient learning algorithms for a wide variety of high-dimensional statistical tasks. As a direct corollary, we obtain computationally efficient algorithms with near-optimal guarantees for the following tasks, when given samples from an arbitrary subgaussian distribution: robust mean estimation, list-decodable mean estimation, clustering mean-separated mixture models, robust covariance-aware mean estimation, robust covariance estimation, and robust linear regression. Our proof makes essential use of Talagrand’s generic chaining/majorizing measures theorem.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Using collective dialogues and AI to find common ground between Israeli and Palestinian peacebuilders</title>
<link href="https://hdl.handle.net/1721.1/164415" rel="alternate"/>
<author>
<name>Konya, Andrew</name>
</author>
<author>
<name>Thorburn, Luke</name>
</author>
<author>
<name>Almasri, Wasim</name>
</author>
<author>
<name>Leshem, Oded Adomi</name>
</author>
<author>
<name>Procaccia, Ariel</name>
</author>
<author>
<name>Schirch, Lisa</name>
</author>
<author>
<name>Bakker, Michiel</name>
</author>
<id>https://hdl.handle.net/1721.1/164415</id>
<updated>2025-12-19T05:31:06Z</updated>
<published>2025-06-23T00:00:00Z</published>
<summary type="text">Using collective dialogues and AI to find common ground between Israeli and Palestinian peacebuilders
Konya, Andrew; Thorburn, Luke; Almasri, Wasim; Leshem, Oded Adomi; Procaccia, Ariel; Schirch, Lisa; Bakker, Michiel
A growing body of work has shown that AI-assisted methods — leveraging large language models, social choice methods, and collective dialogues — can help navigate polarization and surface common ground in controlled lab settings. But what can these approaches contribute in real-world contexts? We present a case study applying these techniques to find common ground between Israeli and Palestinian peacebuilders in the period following October 7th, 2023. From April to July 2024 an iterative deliberative process combining LLMs, bridging-based ranking, and collective dialogues was conducted in partnership with the Alliance for Middle East Peace. Around 138 civil society peacebuilders participated including Israeli Jews, Palestinian citizens of Israel, and Palestinians from the West Bank and Gaza. The process resulted in a set of collective statements, including demands to world leaders, with at least 84% agreement from participants on each side. In this paper, we document the process, results, challenges, and important open questions.
FAccT ’25, Athens, Greece
</summary>
<dc:date>2025-06-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Recourse, Repair, Reparation, &amp; Prevention: A Stakeholder Analysis of AI Supply Chains</title>
<link href="https://hdl.handle.net/1721.1/164414" rel="alternate"/>
<author>
<name>Hopkins, Aspen</name>
</author>
<author>
<name>Struckman, Isabella</name>
</author>
<author>
<name>Klyman, Kevin</name>
</author>
<author>
<name>Silbey, Susan S.</name>
</author>
<id>https://hdl.handle.net/1721.1/164414</id>
<updated>2025-12-19T05:31:11Z</updated>
<published>2025-06-23T00:00:00Z</published>
<summary type="text">Recourse, Repair, Reparation, &amp; Prevention: A Stakeholder Analysis of AI Supply Chains
Hopkins, Aspen; Struckman, Isabella; Klyman, Kevin; Silbey, Susan S.
The AI industry is exploding in popularity, with increasing attention to potential harms and unwanted consequences. In the current digital ecosystem, AI deployments are often the product of AI supply chains (AISC): networks of outsourced models, data, and tooling through which multiple entities contribute to AI development and distribution. AI supply chains lack the modularity, redundancies, or conventional supply chain practices that enable identification, isolation, and easy correction of failures, exacerbating the already difficult processes of responding to ML-generated harms. As the stakeholders participating in and impacted by AISCs have scaled and diversified, so too have the risks they face. In this stakeholder analysis of AI supply chains, we consider who participates in AISCs, what harms they face, where sources of harm lie, and how market dynamics and power differentials inform the type and probability of remedies. Because AI supply chains are purposely invented and implemented, they may be designed to account for, rather than ignore, the complexities, consequences, and risks of deploying AI systems. To enable responsible design and management of AISCs, we offer a typology of responses to AISC-induced harms: recourse, repair, reparation or prevention. We apply this typology to stakeholders participating in a health-care AISC across three stylized markets—vertical integration, horizontal integration, free market—to illustrate how stakeholder positioning and power within an AISC may shape responses to an experienced harm.
FAccT ’25, Athens, Greece
</summary>
<dc:date>2025-06-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>When to Ask a Question: Understanding Communication Strategies in Generative AI Tools</title>
<link href="https://hdl.handle.net/1721.1/164413" rel="alternate"/>
<author>
<name>Park, Charlotte</name>
</author>
<author>
<name>Donahue, Kate</name>
</author>
<author>
<name>Raghavan, Manish</name>
</author>
<id>https://hdl.handle.net/1721.1/164413</id>
<updated>2025-12-19T05:31:04Z</updated>
<published>2025-06-12T00:00:00Z</published>
<summary type="text">When to Ask a Question: Understanding Communication Strategies in Generative AI Tools
Park, Charlotte; Donahue, Kate; Raghavan, Manish
Generative AI tools (GAITs) fundamentally differ from traditional machine learning tools in that they allow users to provide as much or as little information as they choose in their inputs. This flexibility often leads users to omit certain details, relying on the GAIT to infer and fill in less critical information based on distributional knowledge of user preferences. Inferences about preferences lead to natural questions about fairness, since a GAIT’s “best guess” may skew towards the preferences of larger groups at the expense of smaller ones. Unlike more traditional recommender systems, GAITs can acquire additional information about a user’s preferences through feedback or by explicitly soliciting it. This creates an interesting communication challenge: the user is aware of their specific preference, while the GAIT has knowledge of the overall distribution of preferences, and both parties can only exchange a limited amount of information. In this work, we present a mathematical model to describe human-AI co-creation of content under information asymmetry. Our results suggest that GAITs can use distributional information about overall preferences to determine the “right” questions to ask to maximize both welfare and fairness, opening up a rich design space in human-AI collaboration.
UMAP Adjunct ’25, New York City, NY, USA
</summary>
<dc:date>2025-06-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Cloud Next Door: Investigating the Environmental and Socioeconomic Strain of Datacenters on Local Communities</title>
<link href="https://hdl.handle.net/1721.1/164412" rel="alternate"/>
<author>
<name>Ngata, Wacuka M</name>
</author>
<author>
<name>Bashir, Noman</name>
</author>
<author>
<name>Westerlaken, Michelle</name>
</author>
<author>
<name>Liote, Laurent</name>
</author>
<author>
<name>Chandio, Yasra</name>
</author>
<author>
<name>Olivetti, Elsa</name>
</author>
<id>https://hdl.handle.net/1721.1/164412</id>
<updated>2025-12-19T05:31:54Z</updated>
<published>2025-07-21T00:00:00Z</published>
<summary type="text">The Cloud Next Door: Investigating the Environmental and Socioeconomic Strain of Datacenters on Local Communities
Ngata, Wacuka M; Bashir, Noman; Westerlaken, Michelle; Liote, Laurent; Chandio, Yasra; Olivetti, Elsa
Datacenters have become the backbone of modern digital infrastructure, powering the rapid rise of artificial intelligence and promising economic growth and technological progress. However, this expansion has brought growing tensions in the local communities where datacenters are already situated or being proposed. While the mainstream discourse often focuses on energy usage and carbon footprint of the computing sector at a global scale, the local socio-environmental consequences—such as health impacts, water usage, noise pollution, infrastructural strain, and economic burden—remain largely underexplored and poorly addressed. In this work1, we surface these community-level consequences through a mixed-methods study that combines quantitative data with qualitative insights. Focusing on Northern Virginia’s “Data Center Alley,” we highlight how datacenter growth reshapes local environments and everyday life, and examine the power dynamics that determine who benefits and who bears the costs. Our goal is to bring visibility to these impacts and prompt more equitable and informed decisions about the future of digital infrastructure.
COMPASS ’25, Toronto, ON, Canada
</summary>
<dc:date>2025-07-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>SuperSONIC: Cloud-Native Infrastructure for ML Inferencing</title>
<link href="https://hdl.handle.net/1721.1/164411" rel="alternate"/>
<author>
<name>Kondratyev, Dmitry</name>
</author>
<author>
<name>Riedel, Benedikt</name>
</author>
<author>
<name>Chou, Yuan-Tang</name>
</author>
<author>
<name>Cochran-Branson, Miles</name>
</author>
<author>
<name>Paladino, Noah</name>
</author>
<author>
<name>Schultz, David</name>
</author>
<author>
<name>Liu, Mia</name>
</author>
<author>
<name>Duarte, Javier</name>
</author>
<author>
<name>Harris, Philip</name>
</author>
<author>
<name>Hsu, Shih-Chieh</name>
</author>
<id>https://hdl.handle.net/1721.1/164411</id>
<updated>2025-12-19T05:31:03Z</updated>
<published>2025-07-18T00:00:00Z</published>
<summary type="text">SuperSONIC: Cloud-Native Infrastructure for ML Inferencing
Kondratyev, Dmitry; Riedel, Benedikt; Chou, Yuan-Tang; Cochran-Branson, Miles; Paladino, Noah; Schultz, David; Liu, Mia; Duarte, Javier; Harris, Philip; Hsu, Shih-Chieh
The increasing computational demand from growing data rates and complex machine learning (ML) algorithms in large-scale scientific experiments has driven the adoption of the Services for Optimized Network Inference on Coprocessors (SONIC) approach. SONIC accelerates ML inference by offloading it to local or remote coprocessors to optimize resource utilization. Leveraging its portability to different types of coprocessors, SONIC enhances data processing and model deployment efficiency for cutting-edge research in high energy physics (HEP) and multi-messenger astrophysics (MMA). We developed the SuperSONIC project, a scalable server infrastructure for SONIC, enabling the deployment of computationally intensive tasks to Kubernetes clusters equipped with graphics processing units (GPUs). Using NVIDIA Triton Inference Server, SuperSONIC decouples client workflows from server infrastructure, standardizing communication, optimizing throughput, load balancing, and monitoring. SuperSONIC has been successfully deployed for the CMS and ATLAS experiments at the CERN Large Hadron Collider (LHC), the IceCube Neutrino Observatory (IceCube), and the Laser Interferometer Gravitational-Wave Observatory (LIGO) and tested on Kubernetes clusters at Purdue University, the National Research Platform (NRP), and the University of Chicago. SuperSONIC addresses the challenges of the Cloud-native era by providing a reusable, configurable framework that enhances the efficiency of accelerator-based inference deployment across diverse scientific domains and industries.
PEARC ’25, Columbus, OH, USA
</summary>
<dc:date>2025-07-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Systematic engineering of controlled, localized oligonucleotide delivery systems for wound angiogenesis</title>
<link href="https://hdl.handle.net/1721.1/164410" rel="alternate"/>
<author>
<name>Berger, Adam G.</name>
</author>
<id>https://hdl.handle.net/1721.1/164410</id>
<updated>2025-12-19T04:11:01Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Systematic engineering of controlled, localized oligonucleotide delivery systems for wound angiogenesis
Berger, Adam G.
The standard of care for diabetic wounds has remained relatively unchanged for decades, resulting in patients with wounds that do not heal on meaningful time scales, referred to as ulcers, and high rates of recurrence for patients whose wounds do heal. This common complication of diabetes decreases quality of life, increases mortality, and raises health care costs. New paradigms to treat these wounds remains a formidable but critical challenge.&#13;
&#13;
Addressing diabetic ulcers at the molecular level may decrease healing time and prevent recurrence. Impaired blood vessel formation, or angiogenesis, in diabetic ulcers is an important target pathway. Angiogenesis is needed to bring oxygen, nutrients, signaling cues, and cells to newly formed tissue while removing waste. Nucleic acid oligonucleotide therapies, such as small interfering RNAs (siRNAs) or microRNA inhibitors (anti-miRs), that regulate gene expression at the post-transcriptional level, hold particular promise for promoting angiogenesis and wound healing; however, the large size and negative charge of these therapies require drug carriers to mediate their biological effect.&#13;
&#13;
In this thesis, we leverage sequential electrostatic adsorption of oligonucleotide therapy and polyelectrolytes into thin film coatings on commercial wound dressings through the layer-by-layer (LbL) process. These dressings package oligonucleotide, enhance its transfection efficacy, and control its temporal release locally to the wound bed. After initial validation experiments, we sought to systematically understand our drug carrier system and use this insight to engineer better wound dressings. First, we developed a proof-of-concept anti-miR-coated dressing and showed its efficacy in promoting both wound closure and sex-dependent angiogenesis. We found that therapy released from coated dressings had a preferential association with different wound cell types, particularly endothelial cells. We then sought to uncover how changes in the oligonucleotide structure itself may alter interactions with transfection polymers in thin film coatings. We found that binding with certain polyelectrolytes differed based on whether the therapy was a flexible single stranded anti-miR or a more rigid double stranded helix siRNA. We also showed how chemically modified nucleotides, such as locked nucleic acid and 2’-O-methyl RNA, can modulate affinity to polyelectrolytes and ultimately impact transfection efficacy. We also elucidated how physicochemical properties of the hydrolysable transfection-enhancing poly(β-aminoester) polymer mediate its efficiency in transfecting oligonucleotide therapy. We demonstrated that a more hydrophobic polymer enhanced transfection efficacy through its ability to facilitate permeation of biological barriers. Finally, we identified how modulation of the anionic excipients contained in these thin film coatings can be leveraged to vary the release kinetics from coated wound dressings. We engineered formulations that released on a fast or slow time scale. We observed that while both release time scales promoted efficacy in wound closure, they did so through potentially different mechanisms despite the same putative pro-angiogenic anti-miR therapy.&#13;
&#13;
In sum, this thesis elucidates how physicochemical properties and formulation of coated wound dressings alter their interfacial effects with biological systems. We use this knowledge to rationally design better drug carriers that can deliver pro-angiogenic oligonucleotide therapeutics to the wound bed. The findings have broad applications in the delivery of nucleic acid therapies for a wide host of diseases where local delivery to the injured tissue could prove beneficial. Ultimately, we also advance our pro-angiogenic coated wound dressing strategy towards clinical translation. Our strategy has the potential to provide a new, targeted therapeutic paradigm to help those suffering from diabetic ulcers.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>What I Don’t Get About AI . . .</title>
<link href="https://hdl.handle.net/1721.1/164409" rel="alternate"/>
<author>
<name>Wright, Randall S.</name>
</author>
<id>https://hdl.handle.net/1721.1/164409</id>
<updated>2025-12-19T05:31:43Z</updated>
<published>2024-11-05T00:00:00Z</published>
<summary type="text">What I Don’t Get About AI . . .
Wright, Randall S.
In a recent MIT News article titled “Explained: Generative AI,” Adam Zewe (Citation2023) writes&#13;
&#13;
But what do people really mean when they say ‘generative AI?’&#13;
&#13;
Before the generative AI boom of the past few years, when people talked about AI, typically they were talking about machine-learning models that can learn to make a prediction based on data. For instance, such models are trained, using millions of examples, to predict whether a certain X-ray shows signs of a tumor or if a particular borrower is likely to default on a loan.&#13;
&#13;
Generative AI can be thought of as a machine-learning model that is trained to create new data, rather than making a prediction about a specific dataset. A generative AI system is one that learns to generate more objects that look like the data it was trained on.
</summary>
<dc:date>2024-11-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bringing a Working-Class Archive Online: Multimodal Storytelling in a Post-Industrial City</title>
<link href="https://hdl.handle.net/1721.1/164408" rel="alternate"/>
<author>
<name>Walley, Christine</name>
</author>
<id>https://hdl.handle.net/1721.1/164408</id>
<updated>2025-12-19T05:31:50Z</updated>
<published>2024-05-03T00:00:00Z</published>
<summary type="text">Bringing a Working-Class Archive Online: Multimodal Storytelling in a Post-Industrial City
Walley, Christine
We find it familiar to consider objects as useful or aesthetic, as necessities or vain indulgences. We are on less familiar ground when we consider objects as companions to our emotional lives or as provocations to thought. The notion of evocative objects brings together these two less familiar ideas, underscoring the inseparability of thought and feeling in our relationship to things. We think with the objects we love; we love the objects we think with.
</summary>
<dc:date>2024-05-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>What is a Right?</title>
<link href="https://hdl.handle.net/1721.1/164407" rel="alternate"/>
<author>
<name>Setiya, Kieran</name>
</author>
<id>https://hdl.handle.net/1721.1/164407</id>
<updated>2025-12-19T05:31:47Z</updated>
<published>2025-01-02T00:00:00Z</published>
<summary type="text">What is a Right?
Setiya, Kieran
This paper argues for a theory of natural rights on which they are explained in terms of reasons supplied by rational consent. When B has a claim-right against A that A φ, A’s non-consent is not a reason for B not to simply make A φ. This theory solves a puzzle that defeats alternative views, including standard will and interest theories, the demand theory of rights, and the view that rights are irreducible or primitive.
</summary>
<dc:date>2025-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Afterlife of Energy: Post-carbon and Feminist Post-work Politics</title>
<link href="https://hdl.handle.net/1721.1/164406" rel="alternate"/>
<author>
<name>Ghosn, Rania</name>
</author>
<author>
<name>Vronskaya, Alla</name>
</author>
<author>
<name>Jia, Ruo</name>
</author>
<author>
<name>Pohl, Ethel Baraona</name>
</author>
<author>
<name>Dharia, Namita Vijay</name>
</author>
<author>
<name>Aidoo, Fallon Samuels</name>
</author>
<author>
<name>Wolff, Ilze</name>
</author>
<id>https://hdl.handle.net/1721.1/164406</id>
<updated>2025-12-19T05:31:45Z</updated>
<published>2024-07-02T00:00:00Z</published>
<summary type="text">The Afterlife of Energy: Post-carbon and Feminist Post-work Politics
Ghosn, Rania; Vronskaya, Alla; Jia, Ruo; Pohl, Ethel Baraona; Dharia, Namita Vijay; Aidoo, Fallon Samuels; Wolff, Ilze
In the conclusion to her book The Birth of Energy: Fossil Fuels, Thermodynamics, and the Politics of Work, political scientist Cara Daggett considers “A Post-Work Energy Politics” in which she examines the historical coupling of energy and work—meaning human, waged work—in an invitation to disassociate their values and futures. The exponential power of fossil fuels animated the pipedream that powerful, inorganic slaves could substitute unfree human labor, ideas that have driven European imperialism. Fossil fuel systems did not lead, however, to a world beyond work. Rather, today’s “patriarchal slave states” continue to manage the project of putting the world to work through the maximization of productivity, and the subordination of racialized, immigrant, and gendered bodies—who would work for lower, or for no, wages. “The project of work,” Daggett argues, “is in tension with the project of life.” 1 And the rise of “work–life balance” is a mere tactic of governance in which the enemy is fatigue, exhaustion, and burn-out. She suggests, in turn, an alliance between post-carbon and feminist post-work politics and asks: what might it mean for energy politics to refer to the politics of ensuring public vitality? In order to advance a feminist revaluation of work, Daggett draws on Kathi Weeks’s The Problem with Work to outline a project that makes two utopian demands. One demand articulates a paradoxical relationship between the pragmatism of (present) demands and the speculative seeds of possibility; a second demand outlines a utopian form for such politics: partial, fragmented kin to the genre of the manifesto. Daggett concludes with an invitation that “a radical planet politics, if it seeks to contest ecomodernist claims, needs its own politics of pleasure.” 2 In an echo to Daggett’s invitation, the authors of this Educators’ Roundtable were invited to contribute a short text that picks up on the possibilities of a post-carbon, post-work politics.
</summary>
<dc:date>2024-07-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>‘May Our Egos Die So That the World May Live’</title>
<link href="https://hdl.handle.net/1721.1/164405" rel="alternate"/>
<author>
<name>Gupta, Huma</name>
</author>
<id>https://hdl.handle.net/1721.1/164405</id>
<updated>2025-12-19T05:31:51Z</updated>
<published>2024-07-02T00:00:00Z</published>
<summary type="text">‘May Our Egos Die So That the World May Live’
Gupta, Huma
This image-based essay reflects upon the author’s experience of running an experimental filmmaking workshop titled Climate Futures, Cities Past in the spring of 2023 at MIT’s School of Architecture featuring stills from four student films set in Greece, Italy, Pakistan, and Syria. It explores how architectural pedagogy can intersect with filmmaking to offer a critical space outside the studio or seminar paper. Engaging eco-critical and narrative approaches of Stefanie K. Dunning, Jennifer Fay, Ursula K. Le Guin, Donna Harraway, Saidiya Hartman, Adrian J. Ivakhiv, and Ousmane Sembène, it explores how ‘cinema might teach us to die’ or rather, embrace a different eschatological paradigm that moves beyond individual authorship, accomplishment, and post-mortem legacy towards more mutualist, collectivist, and anarchic models of existence. It argues that filmmaking as inquiry can offer a way to collect different kinds of stories that help facilitate the messy, uncomfortable, and wildly creative processes of unworlding and reworlding.
</summary>
<dc:date>2024-07-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>From Oil to Information: Caudill, Rowlett, Scott and Architectures of the Energy Crisis</title>
<link href="https://hdl.handle.net/1721.1/164404" rel="alternate"/>
<author>
<name>Hanly, B. Jack</name>
</author>
<id>https://hdl.handle.net/1721.1/164404</id>
<updated>2025-12-19T05:31:53Z</updated>
<published>2024-07-02T00:00:00Z</published>
<summary type="text">From Oil to Information: Caudill, Rowlett, Scott and Architectures of the Energy Crisis
Hanly, B. Jack
This paper traces the history of architecture-engineering firm Caudill Rowlett Scott (CRS), roughly 1948–1983, in the context of the postwar oil economy and the 1973 energy crisis. The paper examines CRS’s transformation from a design firm into an energy conglomerate over the course of three decades, as it both concretized the fossil economy between Houston and Saudi Arabia and modeled its own corporate structure after its oil clientele. Analyzing numerous CRS projects designed and built for the oil industry, from corporate office towers to industrial training colleges, the paper looks at a moment in which energy systems and the architectural profession were coproduced through the discourses, practices, and institutions of oil at its most vulnerable historical inflection points. CRS thereby epitomized an energy transition from oil as a substance to oil as information, where a growing postindustrial society would leverage the immaterial dimensions of energy as a foundation for building.
</summary>
<dc:date>2024-07-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Demonstrating Xstrings: 3D Printing Cable-driven Mechanism for Actuation, Deformation, and Manipulation</title>
<link href="https://hdl.handle.net/1721.1/164403" rel="alternate"/>
<author>
<name>Li, Jiaji</name>
</author>
<author>
<name>Feng, Shuyue</name>
</author>
<author>
<name>Perroni-Scharf, Maxine</name>
</author>
<author>
<name>Liu, Yujia</name>
</author>
<author>
<name>Guan, Emily</name>
</author>
<author>
<name>Mueller, Stefanie</name>
</author>
<id>https://hdl.handle.net/1721.1/164403</id>
<updated>2025-12-19T05:30:56Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Demonstrating Xstrings: 3D Printing Cable-driven Mechanism for Actuation, Deformation, and Manipulation
Li, Jiaji; Feng, Shuyue; Perroni-Scharf, Maxine; Liu, Yujia; Guan, Emily; Mueller, Stefanie
In this Demo, we present Xstrings, a method for designing and fabricating 3D printed objects with integrated cable-driven mechanisms that can be printed in one go without the need for manual assembly. Xstrings supports four types of cable-driven interactions—bend, coil, screw and compress—which are activated by applying an input force to the cables. To facilitate the design of Xstrings objects, we developed a design tool that allows users to embed cable-driven mechanisms into the object geometry based on the desired interaction by automatically placing joints and cables at the respective locations. The application potential of Xstrings is demonstrated through examples such as manipulable gripping, bionic robot manufacturing, and dynamic prototyping.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>My CXL Pool Obviates Your PCIe Switch</title>
<link href="https://hdl.handle.net/1721.1/164402" rel="alternate"/>
<author>
<name>Zhong, Yuhong</name>
</author>
<author>
<name>Berger, Daniel</name>
</author>
<author>
<name>Zardoshti, Pantea</name>
</author>
<author>
<name>Saurez, Enrique</name>
</author>
<author>
<name>Nelson, Jacob</name>
</author>
<author>
<name>Psistakis, Antonis</name>
</author>
<author>
<name>Fried, Joshua</name>
</author>
<author>
<name>Cidon, Asaf</name>
</author>
<id>https://hdl.handle.net/1721.1/164402</id>
<updated>2025-12-19T05:31:09Z</updated>
<published>2025-06-06T00:00:00Z</published>
<summary type="text">My CXL Pool Obviates Your PCIe Switch
Zhong, Yuhong; Berger, Daniel; Zardoshti, Pantea; Saurez, Enrique; Nelson, Jacob; Psistakis, Antonis; Fried, Joshua; Cidon, Asaf
Pooling PCIe devices across multiple hosts offers a promising solution to mitigate stranded I/O resources, enhance device utilization, address device failures, and reduce total cost of ownership. The only viable option today are PCIe switches, which decouple PCIe devices from hosts by connecting them through a hardware switch. However, the high cost and limited flexibility of PCIe switches hinder their widespread adoption beyond specialized datacenter use cases.&#13;
This paper argues that PCIe device pooling can be effectively implemented in software using CXL memory pools. CXL memory pools improve memory utilization and already have positive return on investment. We find that, once CXL pools are in place, they can serve as a building block for pooling any kind of PCIe device. We demonstrate that PCIe devices can directly use CXL memory as I/O buffers without device modifications, which enables routing PCIe traffic through CXL pool memory. This software-based approach is deployable on today's hardware and is more flexible than hardware PCIe switches. In particular, we explore how disaggregating devices such as NICs can transform datacenter infrastructure.
HOTOS 25, May 14–16, 2025, Banff, AB, Canada
</summary>
<dc:date>2025-06-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>PolyMOF nanoparticles constructed from intrinsically microporous polymer ligand towards scalable composite membranes for CO2 separation</title>
<link href="https://hdl.handle.net/1721.1/164401" rel="alternate"/>
<author>
<name>Lee, Tae Hoon</name>
</author>
<author>
<name>Lee, Byung Kwan</name>
</author>
<author>
<name>Yoo, Seung Yeon</name>
</author>
<author>
<name>Lee, Hyunhee</name>
</author>
<author>
<name>Wu, Wan-Ni</name>
</author>
<author>
<name>Smith, Zachary P</name>
</author>
<author>
<name>Park, Ho Bum</name>
</author>
<id>https://hdl.handle.net/1721.1/164401</id>
<updated>2025-12-18T05:49:51Z</updated>
<published>2023-12-14T00:00:00Z</published>
<summary type="text">PolyMOF nanoparticles constructed from intrinsically microporous polymer ligand towards scalable composite membranes for CO2 separation
Lee, Tae Hoon; Lee, Byung Kwan; Yoo, Seung Yeon; Lee, Hyunhee; Wu, Wan-Ni; Smith, Zachary P; Park, Ho Bum
Integrating different modification strategies into a single step to achieve the desired properties of metal–organic frameworks (MOFs) has been very synthetically challenging, especially in developing advanced MOF/polymer mixed matrix membranes (MMMs). Herein, we report a polymer–MOF (polyMOF) system constructed from a carboxylated polymer with intrinsic microporosity (cPIM-1) ligand. This intrinsically microporous ligand could coordinate with metals, leading to ~100 nm-sized polyMOF nanoparticles. Compared to control MOFs, these polyMOFs exhibit enhanced ultramicroporosity for efficient molecular sieving, and they have better dispersion properties in casting solutions to prepare MMMs. Ultimately, integrating coordination chemistries through the cPIM-1 and polymer-based functionality into porous materials results in polyMOF/PIM-1 MMMs that display excellent CO2 separation performance (surpassing the CO2/N2 and CO2/CH4 upper bounds). In addition to exploring the physicochemical and transport properties of this polyMOF system, scalability has been demonstrated by converting the developed MMM material into large-area (400 cm2) thin-film nanocomposite (TFN) membranes.
</summary>
<dc:date>2023-12-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Single Layer Silk and Cotton Woven Fabrics for Acoustic Emission and Active Sound Suppression</title>
<link href="https://hdl.handle.net/1721.1/164400" rel="alternate"/>
<author>
<name>Yang, Grace H</name>
</author>
<author>
<name>Lin, Jinuan</name>
</author>
<author>
<name>Cheung, Henry</name>
</author>
<author>
<name>Rui, Guanchun</name>
</author>
<author>
<name>Zhao, Yongyi</name>
</author>
<author>
<name>Balachander, Latika</name>
</author>
<author>
<name>Joo, Taigyu</name>
</author>
<author>
<name>Lee, Hyunhee</name>
</author>
<author>
<name>Smith, Zachary P</name>
</author>
<author>
<name>Zhu, Lei</name>
</author>
<author>
<name>Ma, Chu</name>
</author>
<author>
<name>Fink, Yoel</name>
</author>
<id>https://hdl.handle.net/1721.1/164400</id>
<updated>2025-12-18T05:49:53Z</updated>
<published>2024-04-01T00:00:00Z</published>
<summary type="text">Single Layer Silk and Cotton Woven Fabrics for Acoustic Emission and Active Sound Suppression
Yang, Grace H; Lin, Jinuan; Cheung, Henry; Rui, Guanchun; Zhao, Yongyi; Balachander, Latika; Joo, Taigyu; Lee, Hyunhee; Smith, Zachary P; Zhu, Lei; Ma, Chu; Fink, Yoel
Whether intentionally generating acoustic waves or attempting to mitigate unwanted noise, sound control is an area of challenge and opportunity. This study investigates traditional fabrics as emitters and suppressors of sound. When attached to a single strand of a piezoelectric fiber actuator, a silk fabric emits up to 70 dB of sound. Despite the complex fabric structure, vibrometer measurements reveal behavior reminiscent of a classical thin plate. Fabric pore size relative to the viscous boundary layer thickness is found—through comparative fabric analysis—to influence acoustic‐emission efficiency. Sound suppression is demonstrated using two distinct mechanisms. In the first, direct acoustic interference is shown to reduce sound by up to 37 dB. The second relies on pacifying the fabric vibrations by the piezoelectric fiber, reducing the amplitude of vibration waves by 95% and attenuating the transmitted sound by up to 75%. Interestingly, this vibration‐mediated suppression in principle reduces sound in an unlimited volume. It also allows the acoustic reflectivity of the fabric to be dynamically controlled, increasing by up to 68%. The sound emission and suppression efficiency of a 130 µm silk fabric presents opportunities for sound control in a variety of applications ranging from apparel to transportation to architecture.
</summary>
<dc:date>2024-04-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Implications of changing the base raw material – the case of license plate manufacturing</title>
<link href="https://hdl.handle.net/1721.1/164399" rel="alternate"/>
<author>
<name>Uygun, Yilmaz</name>
</author>
<author>
<name>Mohammadian, Noushin</name>
</author>
<author>
<name>Un Nisa, Mehr</name>
</author>
<id>https://hdl.handle.net/1721.1/164399</id>
<updated>2025-12-18T05:49:47Z</updated>
<published>2024-12-31T00:00:00Z</published>
<summary type="text">Implications of changing the base raw material – the case of license plate manufacturing
Uygun, Yilmaz; Mohammadian, Noushin; Un Nisa, Mehr
License plates to uniquely identify vehicles mainly use aluminum as the base material. Currently, there is no distinction of different use cases of license plates, such as short-time usage for test drive and transportation purposes that do not need such long-lasting materials not only from cost but also from sustainability perspectives. This paper presents a methodology to select the best material for different use cases under the holistic consideration of specifically defined criteria as to material properties, sustainability aspects, and supply chain implications. We show that there are several candidate materials for different use cases that stick out by changing the importance of these numerous criteria. In addition, the paper delves deeper into the sustainability aspect by means of a comprehensive System Dynamics model. We show that a scenario in which the company picks up used license plates by relying on a logistics service provider to get them delivered to an external recycling service provider yields the best results.
</summary>
<dc:date>2024-12-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Metalite, a new class of composite laminates with unique properties</title>
<link href="https://hdl.handle.net/1721.1/164398" rel="alternate"/>
<author>
<name>Miravete, Antonio</name>
</author>
<id>https://hdl.handle.net/1721.1/164398</id>
<updated>2025-12-18T05:49:40Z</updated>
<published>2024-07-21T00:00:00Z</published>
<summary type="text">Metalite, a new class of composite laminates with unique properties
Miravete, Antonio
Metalite is a new class of antisymmetric composite laminates composed of angle-plies, 0-degree, and 90-degree plies, presenting unique properties. These include extremely thin laminates suitable for minimum gauge applications, remarkable weight savings compared to conventional quads, adjustable zero and negative coefficients of thermal expansion (CTE), ease of manufacturing, excellent ability to adjust mode frequency, change sound radiation characteristics, and high tunability. In this study, Metalite laminates ranging from 3 to 8 plies are described using their feasible spaces and compared with quads, detailing the weight savings achieved for hard, soft, and neutral laminates. Through an experimental study, the CTE value of a hybrid Metalite is correlated with theory, demonstrating how to tune zero and negative CTE values. The proposed work offers significant benefits through practical solutions for designing and manufacturing lightweight composite laminates with unique properties.
</summary>
<dc:date>2024-07-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tertiary-Amine-Functional Poly(arylene ether)s for Acid-Gas Separations</title>
<link href="https://hdl.handle.net/1721.1/164397" rel="alternate"/>
<author>
<name>Dean, Pablo A</name>
</author>
<author>
<name>Wu, Yifan</name>
</author>
<author>
<name>Guo, Sheng</name>
</author>
<author>
<name>Swager, Timothy M</name>
</author>
<author>
<name>Smith, Zachary P</name>
</author>
<id>https://hdl.handle.net/1721.1/164397</id>
<updated>2025-12-18T05:49:50Z</updated>
<published>2024-10-02T00:00:00Z</published>
<summary type="text">Tertiary-Amine-Functional Poly(arylene ether)s for Acid-Gas Separations
Dean, Pablo A; Wu, Yifan; Guo, Sheng; Swager, Timothy M; Smith, Zachary P
Competitive sorption enables the emergent phenomenon of enhanced CO&lt;sub&gt;2&lt;/sub&gt;-based selectivities for gas separation membranes when using microporous polymers with primary amines. However, strong secondary forces in these polymers through hydrogen bonding results in low solvent solubility, precluding standard solution processing approaches to form these polymers into membrane films. Herein, we circumvent these manufacturing constraints while maintaining competitive-sorption enhancements by synthesizing eight representative microporous poly(arylene ether)s (PAEs) with tertiary amines. High-pressure H&lt;sub&gt;2&lt;/sub&gt;S, CO&lt;sub&gt;2&lt;/sub&gt;, and CH&lt;sub&gt;4&lt;/sub&gt; sorption isotherms were collected for these samples to demonstrate enhanced affinity for acid gases relative to the unfunctional control polymer. Although competitive sorption was observed for all samples, improvements were less pronounced than for primary-amine-functional analogs. For H&lt;sub&gt;2&lt;/sub&gt;S-based separations, the benefits of competitive sorption offset decreases in selectivity due to plasticization. This detailed study helps to elucidate the role of tertiary amines for acid gas separations in solution-processable microporous PAEs.
</summary>
<dc:date>2024-10-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Weathering the storm: examining how organisations navigate the sea of cybersecurity regulations</title>
<link href="https://hdl.handle.net/1721.1/164396" rel="alternate"/>
<author>
<name>Proudfoot, Jeffrey G</name>
</author>
<author>
<name>Cram, W Alec</name>
</author>
<author>
<name>Madnick, Stuart</name>
</author>
<id>https://hdl.handle.net/1721.1/164396</id>
<updated>2025-12-18T05:49:49Z</updated>
<published>2025-05-04T00:00:00Z</published>
<summary type="text">Weathering the storm: examining how organisations navigate the sea of cybersecurity regulations
Proudfoot, Jeffrey G; Cram, W Alec; Madnick, Stuart
Governments around the world routinely regulate the activities of private enterprises to guide the behaviour of individuals and organisations towards acceptable norms. This holds true in a cybersecurity context. However, practitioners report that cybersecurity regulations are often out of date and compliance is confusing, expensive, and time consuming. As a result, organisational leaders are often uncertain about the practicalities of adopting and implementing the various rules, which can lead to trickle-down effects on the robustness of lower-level cybersecurity controls and compliance activities. In this research, we aim to clarify how cybersecurity regulations are operationalised in organisations, as well as reveal the compliance and performance consequences of cybersecurity regulations. To do so, we interviewed 22 senior leaders with expertise in cybersecurity regulations. Our analysis reveals 7 distinct themes (i.e., concept groupings) that are ordered within four phases (i.e., temporal stages), which we use to create the Institutional Cybersecurity Regulations Model (ICRM). The results provide a holistic view of the cybersecurity regulations process in organisations that can serve to clarify current theory relationships and inform future research. As well, the ICRM can provide a practical roadmap for managers to navigate regulatory cybersecurity challenges in their own companies.
</summary>
<dc:date>2025-05-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Assessment of Technoeconomic Opportunities in Automation for Nuclear Microreactors</title>
<link href="https://hdl.handle.net/1721.1/164395" rel="alternate"/>
<author>
<name>Naranjo de Candido, Isabel</name>
</author>
<author>
<name>Al Rashdan, Ahmad</name>
</author>
<author>
<name>Abou Jaoude, Abdalla</name>
</author>
<author>
<name>Buongiorno, Jacopo</name>
</author>
<id>https://hdl.handle.net/1721.1/164395</id>
<updated>2025-12-18T05:49:45Z</updated>
<published>2024-07-24T00:00:00Z</published>
<summary type="text">Assessment of Technoeconomic Opportunities in Automation for Nuclear Microreactors
Naranjo de Candido, Isabel; Al Rashdan, Ahmad; Abou Jaoude, Abdalla; Buongiorno, Jacopo
Achieving full decarbonization of all economic sectors remains a challenge, especially in niche markets. For example, remote communities and industrial or mining activities detached from the main electric grid heavily rely on fossil fuels, similar to urban and industrial microgrids with combined heat and power needs. A combination of renewables and energy storage is often not suitable due to cost, reliability, intermittency, and large storage requirements. Small nuclear reactors with a flexible purpose could serve these applications. Microreactors (MR) are a class of reactors that are compact, factory manufactured, transportable, and self-regulating. Typically, they generate much less power than their large reactor counterparts. The main advantages of microreactors include the versatile nature of the energy produced, the reliability of supply, and freedom from having to transport and store large quantities of fuels on-site, coupled with the absence of dependence on an electrical grid. A strong business case is needed to move from the microreactor prototype to the commercialization phase. In fact, fossil fuels are still relatively inexpensive, and in the near term, carbon credits will be available to virtually compensate for emissions. For microreactors, one of the main costs in operation and maintenance (O&amp;M) is their staffing levels. In this study, we investigate how to optimize the number (and thus the cost) of workers, moving from a traditional, fully manned, on-site personnel approach to an unmanned, remote personnel approach. We examine four different staffing models that can be implemented as the technology matures and evolves. We estimate the staffing needs of each model and build a business case to justify the substitution of on-site personnel with adequate technologies. To do so, we propose a cost model to quantify potential cost reductions from automating O&amp;M activities. The model accounts for both the reduction in cost derived from the reduced number of full-time-equivalent (FTE) employees and the increase in cost derived from the need to buy new control hardware as needed. Applying the cost model that we created to different scenarios, an on-site O&amp;M cost reduction exceeding 80% can be expected. Additionally, we found that it is more impactful to focus on automating routine O&amp;M tasks rather than attempting to automate transient management (shutdowns, restarts, monitoring condition deviations). In fact, transients typically account for less than 1% of the total FTE time spent on the reactors.
</summary>
<dc:date>2024-07-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Enhancing acid–gas separations using free volume manipulation for microporous poly(arylene ether)s</title>
<link href="https://hdl.handle.net/1721.1/164394" rel="alternate"/>
<author>
<name>Joo, Taigyu</name>
</author>
<author>
<name>Wu, Yifan</name>
</author>
<author>
<name>Lee, Tae Hoon</name>
</author>
<author>
<name>Dean, Pablo A</name>
</author>
<author>
<name>Wu, Wan-Ni</name>
</author>
<author>
<name>Swager, Timothy M</name>
</author>
<author>
<name>Smith, Zachary P</name>
</author>
<id>https://hdl.handle.net/1721.1/164394</id>
<updated>2025-12-18T05:49:37Z</updated>
<published>2025-01-27T00:00:00Z</published>
<summary type="text">Enhancing acid–gas separations using free volume manipulation for microporous poly(arylene ether)s
Joo, Taigyu; Wu, Yifan; Lee, Tae Hoon; Dean, Pablo A; Wu, Wan-Ni; Swager, Timothy M; Smith, Zachary P
To address global energy needs, traditional and renewable natural gas will likely be key energy sources for years to come. However, raw feeds require removal of impurities like hydrogen sulfide (H2S) and carbon dioxide (CO2) before use. In this study, we illustrate the key challenges of using traditional post-synthetic modification approaches to simultaneously enhance H2S/CH4 and CO2/CH4 selectivities in microporous polymer membranes, while also demonstrating how free volume manipulation (FVM) can overcome some of these challenges. By integrating tert-butoxycarbonyl-protected piperazinyl (PIP-tBOC) groups into a microporous poly(arylene ether) (PAE-1) and applying thermal treatment with oxygen to degrade the incorporated units in solid-state films, we successfully increased sorption capacity and diffusion selectivity. This modification enhanced the mixed-gas selectivity of H2S/CH4 and CO2/CH4 by 88% and 114%, respectively, compared to the original PAE-1 films. Consequently, the films achieved a combined acid gas (CAG) selectivity of 48, which approached the CAG upper bound for glassy polymers. The FVM process not only improved the selectivity of these membrane films but also markedly increased their resistance to plasticization, making them more suitable for industrial applications in acid–gas separation. This post-synthetic modification strategy, applicable to any glassy polymer containing a nucleophilic aromatic unit, provides a means to leverage the competitive sorption of H2S molecules and the molecular sieving properties of the polymer.
</summary>
<dc:date>2025-01-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Knowledge and ignorance in forensic identification: the origins of a contested human rights fact</title>
<link href="https://hdl.handle.net/1721.1/164393" rel="alternate"/>
<author>
<name>Medina, Eden</name>
</author>
<id>https://hdl.handle.net/1721.1/164393</id>
<updated>2025-12-18T05:49:39Z</updated>
<published>2024-12-31T00:00:00Z</published>
<summary type="text">Knowledge and ignorance in forensic identification: the origins of a contested human rights fact
Medina, Eden
In 2006, DNA testing revealed that the Chilean Medical Legal Service had misidentified at least half of the 96 human rights victims whose remains had been exhumed in 1991 from a lot in the Santiago General Cemetery known as Patio 29. Years earlier the government had returned those remains to the victims' families. This examination of the history of that forensic misidentification uncovers the role played by the shifting relations of knowledge and ignorance in establishing the legal facts of those identities. Building on the growing literature in agnotology, the article demonstrates the ways in which the context of dictatorship created varied and overlapping forms of ignorance that continued to shape the outcome of the forensic work even after Chile returned to democracy. By detailing different examples of ignorance production by the state, a human rights organization, and a university department under military surveillance, the article illuminates the diverse ways that the civil–military dictatorship worked against knowledge production in the domains of science and human rights.
</summary>
<dc:date>2024-12-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tweeting during the Pandemic in New York City: Unveiling the Evolving Sentiment Landscape of NYC through a Spatiotemporal Analysis of Geolocated Tweets</title>
<link href="https://hdl.handle.net/1721.1/164392" rel="alternate"/>
<author>
<name>Ignaccolo, Carmelo</name>
</author>
<author>
<name>Wibisono, Kevin</name>
</author>
<author>
<name>Sutto, Maria Paola</name>
</author>
<author>
<name>Plunz, Richard A.</name>
</author>
<id>https://hdl.handle.net/1721.1/164392</id>
<updated>2025-12-18T05:50:00Z</updated>
<published>2024-05-26T00:00:00Z</published>
<summary type="text">Tweeting during the Pandemic in New York City: Unveiling the Evolving Sentiment Landscape of NYC through a Spatiotemporal Analysis of Geolocated Tweets
Ignaccolo, Carmelo; Wibisono, Kevin; Sutto, Maria Paola; Plunz, Richard A.
This article explores the relationship between spatial factors, socioeconomic conditions, and Twitter (now called X) sentiment in New York City (NYC) during the COVID-19 pandemic. Using Twitter data, the study investigates how sentiment varied across different geographies. It examines whether sentiment scores, unemployment rates, and COVID-19 hospitalization rates in NYC zip codes revealed spatial associations. The research employs sentiment analysis, a natural language processing technique used to algorithmically determine the emotional tone of a text, on a database of geo-located tweets spanning January to December 2020. The findings reveal a shift towards more negative sentiment during the initial year of the pandemic. Moreover, the study uncovers variations in sentiment trends across boroughs and zip codes. Additionally, a zip code-level fixed-effects model demonstrates a statistically significant relationship between sentiment scores and unemployment rates. In summary, this article makes a two-fold contribution: firstly, it adds a spatial lens to the scholarly debate regarding the use of Twitter data as an indicator of publicly expressed sentiment; secondly, it provides empirical evidence on the spatial interconnectedness of sentiment, health (hospitalization), and socioeconomic factors (unemployment). Overall, this research sheds light on the nuanced relationship between sentiment and space during the COVID-19 pandemic in NYC.
</summary>
<dc:date>2024-05-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Solution‐Processable, Ladder‐Branched Polyimides of Intrinsic Microporosity by [4+4] Cycloaddition for Membrane Gas Separation</title>
<link href="https://hdl.handle.net/1721.1/164391" rel="alternate"/>
<author>
<name>Lee, Tae Hoon</name>
</author>
<author>
<name>Dean, Pablo A</name>
</author>
<author>
<name>Yeo, Jing Ying</name>
</author>
<author>
<name>Smith, Zachary P</name>
</author>
<id>https://hdl.handle.net/1721.1/164391</id>
<updated>2025-12-18T05:49:54Z</updated>
<published>2025-10-15T00:00:00Z</published>
<summary type="text">Solution‐Processable, Ladder‐Branched Polyimides of Intrinsic Microporosity by [4+4] Cycloaddition for Membrane Gas Separation
Lee, Tae Hoon; Dean, Pablo A; Yeo, Jing Ying; Smith, Zachary P
Advancements in membrane-based gas separation have the potential to address global challenges related to energy and the environment. However, new membrane materials must have excellent separation performance, stability, and processability, and simultaneously achieving all three metrics is extremely challenging. To circumvent these issues, a post-synthetic modification of polyimides of intrinsic microporosity (PIM-PIs) synthesized with a UV light (UV)-reactive anthracene co-monomer is reported. UV irradiation on the PIM-PI solution converts the anthracene units into dianthracene linkages by [4+4] cycloaddition, while the resultant PIM-PI is still solution-processable due to the branched structure. The ladder-like dianthracene moieties significantly increased both microporosity (&lt;20 Å) and ultramicroporosity (&lt;7 Å) of the precursor PIM-PI. Notably, the UV-treated PIM-PI membrane exhibits a large boost in pure-gas CO2 permeability by up to 260%, reaching 376 barrer, while maintaining CO2/CH4 ideal selectivity of 35 at 1 bar. Moreover, the developed membrane material has enhanced stability against physical aging and plasticization and showcases excellent CO2/CH4 mixed-gas selectivity (&gt;30 up to 31 bar feed pressure), which surpasses the 2018 mixed-gas upper bound.
</summary>
<dc:date>2025-10-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interactive infill topology optimisation guided by user drawn patterns</title>
<link href="https://hdl.handle.net/1721.1/164390" rel="alternate"/>
<author>
<name>Schiffer, Gillian</name>
</author>
<author>
<name>Schmidt, Martin-Pierre</name>
</author>
<author>
<name>Pedersen, Claus BW</name>
</author>
<author>
<name>Carstensen, Josephine V</name>
</author>
<id>https://hdl.handle.net/1721.1/164390</id>
<updated>2025-12-18T05:50:02Z</updated>
<published>2024-12-31T00:00:00Z</published>
<summary type="text">Interactive infill topology optimisation guided by user drawn patterns
Schiffer, Gillian; Schmidt, Martin-Pierre; Pedersen, Claus BW; Carstensen, Josephine V
Widespread use of topology optimisation as a design tool for additive manufacturing faces major inhibiting obstacles, such as high computational costs and complexity, concern for other failure modes, and manufacturability. Interactive infill topology optimisation presents an alternative approach to circumvent some of these barriers. The novel contribution of the present work prompts the user to draw a tailored infill pattern, specify regions of interest to locate the infill, and control how strictly the pattern is replicated in the material layout of the design using appearance constraints. This approach improves engineering metrics not directly included in the optimisation formulation by incorporating the user’s engineering experience, thereby avoiding increased computational costs, parameter tuning, and numerical artifacts associated with complex objective functions and constraints. Two 2D benchmark examples increase the linear buckling resistance and energy absorption, respectively, and a 2.5D example minimises compliance while reducing the quantity of overhang supports for additive manufacturing.
</summary>
<dc:date>2024-12-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Minimum Bucket and Car Battery Problems</title>
<link href="https://hdl.handle.net/1721.1/164389" rel="alternate"/>
<author>
<name>Feng, Raymond</name>
</author>
<id>https://hdl.handle.net/1721.1/164389</id>
<updated>2025-12-18T05:49:43Z</updated>
<published>2024-06-11T00:00:00Z</published>
<summary type="text">Minimum Bucket and Car Battery Problems
Feng, Raymond
A solar car needs 5 fully charged batteries to run, and it depletes those batteries in 5 hours. The batteries are rechargeable, and solar panels on the car are able to charge 3 batteries simultaneously. It takes 3 hours for the solar panels to finish charging 3 batteries. Furthermore, batteries cannot be charging and in use at the same time. If the car always starts running as soon as 5 full batteries are available, and the solar panels can only operate if 3 empty batteries are available, how many batteries are needed so that the car can eventually run without stopping? We investigate this resource optimization problem and its different variations.
</summary>
<dc:date>2024-06-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Developers Grappling with Flood Risks: Evaluating Boston’s Climate Resiliency Checklist</title>
<link href="https://hdl.handle.net/1721.1/164388" rel="alternate"/>
<author>
<name>Loescher-Montal, Angela</name>
</author>
<author>
<name>Mazereeuw, Miho</name>
</author>
<author>
<name>Shen, Kairos</name>
</author>
<id>https://hdl.handle.net/1721.1/164388</id>
<updated>2025-12-18T05:49:56Z</updated>
<published>2024-01-02T00:00:00Z</published>
<summary type="text">Developers Grappling with Flood Risks: Evaluating Boston’s Climate Resiliency Checklist
Loescher-Montal, Angela; Mazereeuw, Miho; Shen, Kairos
Ongoing waterfront development in risky areas across the globe raises the continued paradox between resilience initiatives and broader market mechanisms. Even as flood risk increases, existing development patterns do not often adequately account for future flood risk. This research examines using resiliency checklists as a growing regulatory tool to improve predevelopment flood resilience standards. The research employs mixed quantitative and qualitative methods to evaluate how four large-scale developments interacted with Boston’s Climate Resiliency Checklist in the last decade and how its current design criteria influenced design decisions. The checklist’s format, design, and time horizon considerations are evaluated. Increased format and smaller-scale tools are considered.
</summary>
<dc:date>2024-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>The “content” of intergroup contact: lessons from the Denton Women’s Interracial Fellowship</title>
<link href="https://hdl.handle.net/1721.1/164387" rel="alternate"/>
<author>
<name>English, Jasmine</name>
</author>
<id>https://hdl.handle.net/1721.1/164387</id>
<updated>2025-12-18T05:49:42Z</updated>
<published>2024-04-14T00:00:00Z</published>
<summary type="text">The “content” of intergroup contact: lessons from the Denton Women’s Interracial Fellowship
English, Jasmine
Does the content of intergroup contact matter? Despite extensive research on the benefits of contact for intergroup relations, we know little about what happens during contact-based programs and interventions. This article addresses this gap by inductively building theory about the desired content of contact. My analysis draws on oral history interviews and archival data from the Denton Women’s Interracial Fellowship: a real-world case of intergroup contact that emerged to ease the process of school desegregation in Denton, Texas. My analysis of these data moves beyond the scope conditions suggested by (Allport, Gordon W. 1954. The Nature of Prejudice. 25th ed. Cambridge, MA: Perseus Books) to highlight the role of conversations about outgroup experiences. I illuminate how these conversations produce positive impacts on intergroup relations and draw out the implications for research on intergroup contact: namely, that forms of intergroup contact that incorporate these conversations are more likely to improve intergroup relations, and that intergroup contact interventions should explicitly encourage or incorporate these kinds of conversations.
</summary>
<dc:date>2024-04-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Roadmap of Graphite Moderator and Graphite-Matrix TRISO Fuel Management Options</title>
<link href="https://hdl.handle.net/1721.1/164386" rel="alternate"/>
<author>
<name>Forsberg, CW</name>
</author>
<id>https://hdl.handle.net/1721.1/164386</id>
<updated>2025-12-18T05:50:03Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">Roadmap of Graphite Moderator and Graphite-Matrix TRISO Fuel Management Options
Forsberg, CW
Most high-temperature reactors use graphite as a moderator and structural material. This includes high-temperature gas-cooled reactors with helium cooling and TRi-structural ISOtropic (TRISO) fuel particles embedded in graphite, as well as fluoride salt–cooled high-temperature reactors with clean salt coolant and TRISO fuel particles embedded in graphite and thermal spectrum molten salt reactors with a graphite moderator and fuel dissolved in the salt. The largest volume radioactive waste stream from these reactors is the irradiated graphite. We describe herein a roadmap for management of these graphite wastes that contain radioactive 14C, tritium, and other radionuclides. There may be some graphite wastes with sufficiently low radioactivity levels that can be treated as nonradioactive waste and managed like other graphite waste. Management options for the graphite include (1) direct disposal, (2) recycled back to the reactor or other nuclear applications, and (3) oxidizing the graphite with release as an effluent or underground sequestration of the carbon dioxide. Cosequestration of this carbon dioxide with carbon dioxide from industrial, biological, and cement production processes can isotopically dilute the 14C before sequestration to eliminate the possibility of exceeding individual radiation exposure limits. We also describe options for processing graphite-matrix TRISO fuel, including separating the bulk graphite to reduce the volumes of used fuel for disposal or processing to recover fissile materials. The inventories of radioactive isotopes in different carbon wastes vary by many orders of magnitude; thus, there is no single economic option for the management of all graphite waste.
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Adaptive Model Reduction of High-Order Solutions of Compressible Flows via Optimal Transport</title>
<link href="https://hdl.handle.net/1721.1/164385" rel="alternate"/>
<author>
<name>Van Heyningen, Robert Loek</name>
</author>
<author>
<name>Nguyen, Ngoc Cuong</name>
</author>
<author>
<name>Blonigan, Patrick</name>
</author>
<author>
<name>Peraire, Jaime</name>
</author>
<id>https://hdl.handle.net/1721.1/164385</id>
<updated>2025-12-18T05:49:58Z</updated>
<published>2024-04-28T00:00:00Z</published>
<summary type="text">Adaptive Model Reduction of High-Order Solutions of Compressible Flows via Optimal Transport
Van Heyningen, Robert Loek; Nguyen, Ngoc Cuong; Blonigan, Patrick; Peraire, Jaime
The solution of conservation laws with parametrised shock waves presents challenges for both high-order numerical methods and model reduction techniques. We introduce an r-adaptivity scheme based on optimal transport and apply it to develop reduced order models for compressible flows. The optimal transport theory allows us to compute high-order r-adaptive meshes from a starting reference mesh by solving the Monge–Ampère equation. A high-order discretization of the conservation laws enables high-order solutions to be computed on the resulting r-adaptive meshes. Furthermore, the Monge–Ampère solutions contain mappings that are used to reduce the spatial locality of the resulting solutions and make them more amenable to model reduction. We use a non-intrusive model reduction method to construct reduced order models of both the mesh and the solution. The procedure is demonstrated on three supersonic and hypersonic test cases, with the hybridisable discontinuous Galerkin method being used as the full order model.
</summary>
<dc:date>2024-04-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Demonstrating Thermochromorph: Dynamic Relief Printing with Thermochromic Inks</title>
<link href="https://hdl.handle.net/1721.1/164384" rel="alternate"/>
<author>
<name>Sethapakdi, Ticha</name>
</author>
<author>
<name>Myers, Paris</name>
</author>
<author>
<name>Yu, Tianyu</name>
</author>
<author>
<name>Covarrubias, Juliana</name>
</author>
<author>
<name>Leake, Mackenzie</name>
</author>
<author>
<name>Mueller, Stefanie</name>
</author>
<id>https://hdl.handle.net/1721.1/164384</id>
<updated>2025-12-18T05:49:35Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Demonstrating Thermochromorph: Dynamic Relief Printing with Thermochromic Inks
Sethapakdi, Ticha; Myers, Paris; Yu, Tianyu; Covarrubias, Juliana; Leake, Mackenzie; Mueller, Stefanie
We demonstrate Thermochromorph, a novel relief printing technique that produces multicolored images that transition into each other through changes in temperature. Our process utilizes two sets of CMYK thermochromic inks that exhibit complementary color-changing behaviors: one shifting from color to transparency, the other from transparency to color at the same activation temperature. We describe our printmaking workflow, provide an open-source software toolkit, showcase prints made with our system, and explore how our system can be used in creative practice through an artist workshop. By incorporating new materials and technology with the rich history of printmaking, our work extends the expressive capabilities of relief printing as the medium continues to evolve.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Demonstrating OpenEarable 2.0: An AI-Powered Ear Sensing Platform</title>
<link href="https://hdl.handle.net/1721.1/164383" rel="alternate"/>
<author>
<name>R?ddiger, Tobias</name>
</author>
<author>
<name>Zitz, Valeria</name>
</author>
<author>
<name>Hummel, Jonas</name>
</author>
<author>
<name>K?ttner, Michael</name>
</author>
<author>
<name>Lepold, Philipp</name>
</author>
<author>
<name>King, Tobias</name>
</author>
<author>
<name>Paradiso, Joseph</name>
</author>
<author>
<name>Clarke, Christopher</name>
</author>
<author>
<name>Beigl, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/164383</id>
<updated>2025-12-18T05:49:04Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Demonstrating OpenEarable 2.0: An AI-Powered Ear Sensing Platform
R?ddiger, Tobias; Zitz, Valeria; Hummel, Jonas; K?ttner, Michael; Lepold, Philipp; King, Tobias; Paradiso, Joseph; Clarke, Christopher; Beigl, Michael
In this demo, we present OpenEarable 2.0, an open-source earphone platform designed to provide an interactive exploration of physiological ear sensing and the development of AI applications. Attendees will have the opportunity to explore real-time sensor data and understand the capabilities of OpenEarable 2.0’s sensing components. OpenEarable 2.0 integrates a rich set of sensors, including two ultrasound-capable microphones (inward/outward), a 3-axis ear canal accelerometer/bone conduction microphone, a 9-axis head inertial measurement unit, a pulse oximeter, an optical temperature sensor, an ear canal pressure sensor, a microSD slot, and a microcontroller. Participants will be able to try out the web-based dashboard and mobile app for real-time control and data visualization. Furthermore, the demo will show different applications and real-time data based on OpenEarable 2.0 across physiological sensing and health monitoring, movement and activity tracking, and human-computer interaction.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Conductive Ceramics: Embedding Electronics in Everyday Ceramic Objects</title>
<link href="https://hdl.handle.net/1721.1/164382" rel="alternate"/>
<author>
<name>Chin, Sam</name>
</author>
<author>
<name>Kim, Keunwook</name>
</author>
<author>
<name>An, Audrey</name>
</author>
<author>
<name>Kuang, Quincy</name>
</author>
<author>
<name>Zhang, Kai</name>
</author>
<id>https://hdl.handle.net/1721.1/164382</id>
<updated>2025-12-18T05:49:02Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Conductive Ceramics: Embedding Electronics in Everyday Ceramic Objects
Chin, Sam; Kim, Keunwook; An, Audrey; Kuang, Quincy; Zhang, Kai
We present a method for integrating conductive traces into ceramic objects using a silver-based glaze compatible with traditional firing processes. Our glaze combines silver powder with a glass former and xanthan gum, enabling application through standard ceramic techniques while maintaining the durability of conventional ceramics. Through a material-driven experimentation approach, we characterized how glaze composition and post-processing methods affect conductivity and surface quality. We demonstrate this technique through functional prototypes including a temperature-responsive heating vessel, a touch-sensitive musical controller utilizing kintsugi repair, and an interactive marble machine. This work bridges traditional ceramic craft with interactive technology, offering ceramicists a way to incorporate electronic functionality while preserving traditional methods.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Towards Resource-Efficient Compound AI Systems</title>
<link href="https://hdl.handle.net/1721.1/164381" rel="alternate"/>
<author>
<name>Chaudhry, Gohar Irfan</name>
</author>
<author>
<name>Choukse, Esha</name>
</author>
<author>
<name>Goiri, ??igo</name>
</author>
<author>
<name>Fonseca, Rodrigo</name>
</author>
<author>
<name>Belay, Adam</name>
</author>
<author>
<name>Bianchini, Ricardo</name>
</author>
<id>https://hdl.handle.net/1721.1/164381</id>
<updated>2025-12-18T05:48:25Z</updated>
<published>2025-06-06T00:00:00Z</published>
<summary type="text">Towards Resource-Efficient Compound AI Systems
Chaudhry, Gohar Irfan; Choukse, Esha; Goiri, ??igo; Fonseca, Rodrigo; Belay, Adam; Bianchini, Ricardo
Compound AI Systems, integrating multiple interacting components like models, retrievers, and external tools, have emerged as essential for addressing complex AI tasks. However, current implementations suffer from inefficient resource utilization due to tight coupling between application logic and execution details, a disconnect between orchestration and resource management layers, and the perceived exclusiveness between efficiency and quality.&#13;
We propose a vision for resource-efficient Compound AI Systems through a declarative workflow programming model and an adaptive runtime system for dynamic scheduling and resource-aware decision-making. Decoupling application logic from low-level details exposes levers for the runtime to flexibly configure the execution environment and resources, without compromising on quality. Enabling collaboration between the workflow orchestration and cluster manager enables higher efficiency through better scheduling and resource management.&#13;
We are building a prototype system, called Murakkab, to realize this vision. Our preliminary evaluation demonstrates speedups up to ~ 3.4× in workflow completion times while delivering ~ 4.5× higher energy efficiency, showing promise in optimizing resources and advancing AI system design.
HOTOS 25, May 14–16, 2025, Banff, AB, Canada
</summary>
<dc:date>2025-06-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fits like a Flex-Glove: Automatic Design of Personalized FPCB-Based Tactile Sensing Gloves</title>
<link href="https://hdl.handle.net/1721.1/164380" rel="alternate"/>
<author>
<name>Murphy, Devin</name>
</author>
<author>
<name>Li, Yichen</name>
</author>
<author>
<name>Owens, Crystal</name>
</author>
<author>
<name>Stanton, Layla</name>
</author>
<author>
<name>Liang, Paul Pu</name>
</author>
<author>
<name>Luo, Yiyue</name>
</author>
<author>
<name>Torralba, Antonio</name>
</author>
<author>
<name>Matusik, Wojciech</name>
</author>
<id>https://hdl.handle.net/1721.1/164380</id>
<updated>2025-12-18T05:48:58Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Fits like a Flex-Glove: Automatic Design of Personalized FPCB-Based Tactile Sensing Gloves
Murphy, Devin; Li, Yichen; Owens, Crystal; Stanton, Layla; Liang, Paul Pu; Luo, Yiyue; Torralba, Antonio; Matusik, Wojciech
Resistive tactile sensing gloves have captured the interest of researchers spanning diverse domains, such as robotics, healthcare, and human-computer interaction. However, existing fabrication methods often require labor-intensive assembly or costly equipment, limiting accessibility. Leveraging flexible printed circuit board (FPCB) technology, we present an automated pipeline for generating resistive tactile sensing glove design files solely from a simple hand photo on legal-size paper, which can be readily supplied to commercial board houses for manufacturing. Our method enables cost-effective, accessible production at under $130 per glove with sensor assembly times under 15 minutes. Sensor performance was characterized under varying pressure loads, and a preliminary user evaluation showcases four unique automatically manufactured designs, evaluated for their reliability and comfort.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Randomness, Not Representation: The Unreliability of Evaluating Cultural Alignment in LLMs</title>
<link href="https://hdl.handle.net/1721.1/164379" rel="alternate"/>
<author>
<name>Khan, Ariba</name>
</author>
<author>
<name>Casper, Stephen</name>
</author>
<author>
<name>Hadfield-Menell, Dylan</name>
</author>
<id>https://hdl.handle.net/1721.1/164379</id>
<updated>2025-12-18T05:49:05Z</updated>
<published>2025-06-23T00:00:00Z</published>
<summary type="text">Randomness, Not Representation: The Unreliability of Evaluating Cultural Alignment in LLMs
Khan, Ariba; Casper, Stephen; Hadfield-Menell, Dylan
Research on the ‘cultural alignment’ of Large Language Models (LLMs) has emerged in response to growing interest in understanding representation across diverse stakeholders. Current approaches to evaluating cultural alignment through survey-based assessments that borrow from social science methodologies often overlook systematic robustness checks. We identify and test three assumptions behind current survey-based evaluation methods: (1) Stability: that cultural alignment is a property of LLMs rather than an artifact of evaluation design, (2) Extrapolability: that alignment with one culture on a narrow set of issues predicts alignment with that culture on others, and (3) Steerability: that LLMs can be reliably prompted to represent specific cultural perspectives. Through experiments examining both explicit and implicit preferences of leading LLMs, we find a high level of instability across presentation formats, incoherence between evaluated versus held-out cultural dimensions, and erratic behavior under prompt steering. We show that these inconsistencies can cause the results of an evaluation to be very sensitive to minor variations in methodology. Finally, we demonstrate in a case study on evaluation design that narrow experiments and a selective assessment of evidence can be used to paint an incomplete picture of LLMs’ cultural alignment properties. Overall, these results highlight significant limitations of current survey-based approaches to evaluating the cultural alignment of LLMs and highlight a need for systematic robustness checks and red-teaming for evaluation results. Data and code are available at https://doi.org/akhan02/cultural-dimension-cover-letters and https://doi.org/ariba-k/llm-cultural-alignment-evaluation, respectively.
FAccT ’25, Athens, Greece
</summary>
<dc:date>2025-06-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Aptly: Making Mobile Apps from Natural Language</title>
<link href="https://hdl.handle.net/1721.1/164378" rel="alternate"/>
<author>
<name>Patton, Evan</name>
</author>
<author>
<name>Kim, David</name>
</author>
<author>
<name>Granquist, Ashley</name>
</author>
<author>
<name>Liu, Robin</name>
</author>
<author>
<name>Scott, Arianna</name>
</author>
<author>
<name>Zamanova, Jennet</name>
</author>
<author>
<name>Abelson, Harold</name>
</author>
<id>https://hdl.handle.net/1721.1/164378</id>
<updated>2025-12-18T05:48:46Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Aptly: Making Mobile Apps from Natural Language
Patton, Evan; Kim, David; Granquist, Ashley; Liu, Robin; Scott, Arianna; Zamanova, Jennet; Abelson, Harold
This paper introduces Aptly, a platform designed to democratize mobile app development, particularly for young learners. Aptly integrates a Large Language Model (LLM) with App Inventor, enabling users to create apps using their natural language. User’s description is translated into a programming language that corresponds with App Inventor’s visual blocks. A preliminary study with high school students demonstrated the usability and potential of the platform. Prior programming experience influenced how users interact with Aptly. Participants identified areas for improvement and expressed a shift in perspective regarding programming accessibility and AI’s role in creative endeavors.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>AcceloPrint: Fabricating Customizable Accelerometers with Multi-Material 3D Printing</title>
<link href="https://hdl.handle.net/1721.1/164377" rel="alternate"/>
<author>
<name>Ozbek, Doga</name>
</author>
<author>
<name>AlAlawi, Marwa</name>
</author>
<author>
<name>Wessely, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/164377</id>
<updated>2025-12-18T05:48:43Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">AcceloPrint: Fabricating Customizable Accelerometers with Multi-Material 3D Printing
Ozbek, Doga; AlAlawi, Marwa; Wessely, Michael
We introduce AcceloPrint, 3D-printed acceleration sensors that can be fabricated in one pass alongside a 3D object and report on its angular orientation or acceleration. AcceloPrint utilizes capacitive sensing to track the deflection of a 3D printed cantilever beam to a sensor patch. Our AcceloPrint tool integrated into a 3D editor generates a sensor with a user-defined sensing range generated by our computational model. We also propose a novel sensor design with an adjustable sensing range post-fabrication. Our technical evaluation shows our sensor can detect acceleration up to 50 m/s2, with a root mean squared error of 0.35 m/s2 (%3.57) in the range up to 10 m/s2. We demonstrate AcceloPrint with three application examples on sports performance tracking and tangible tools.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>"How can we learn and use AI at the same time?": Participatory Design of GenAI with High School Students</title>
<link href="https://hdl.handle.net/1721.1/164376" rel="alternate"/>
<author>
<name>Pu, Isabella</name>
</author>
<author>
<name>Ravi, Prerna</name>
</author>
<author>
<name>Dinh, Linh</name>
</author>
<author>
<name>Joe, Chelsea</name>
</author>
<author>
<name>Ogoe, Caitlin</name>
</author>
<author>
<name>Li, Zixuan</name>
</author>
<author>
<name>Breazeal, Cynthia</name>
</author>
<author>
<name>Ostrowski, Anastasia</name>
</author>
<id>https://hdl.handle.net/1721.1/164376</id>
<updated>2025-12-18T05:48:40Z</updated>
<published>2025-06-23T00:00:00Z</published>
<summary type="text">"How can we learn and use AI at the same time?": Participatory Design of GenAI with High School Students
Pu, Isabella; Ravi, Prerna; Dinh, Linh; Joe, Chelsea; Ogoe, Caitlin; Li, Zixuan; Breazeal, Cynthia; Ostrowski, Anastasia
As generative AI (GenAI) emerges as a transformative force, clear understanding of high school students’ perspectives is essential for GenAI’s meaningful integration in high school environments. In this work, we draw insights from a participatory design workshop where we engaged 17 high school students—a group rarely involved in prior research in this area—through the design of novel GenAI tools and school policies addressing their key concerns. Students identified challenges and developed solutions outlining their ideal features in GenAI tools, appropriate school use, and regulations. These centered around the problem spaces of combating bias &amp; misinformation, tackling crime &amp; plagiarism, preventing over-reliance on AI, and handling false accusations of academic dishonesty. Building on our participants’ underrepresented perspectives, we propose new guidelines targeted at educational technology designers for development of GenAI technologies in high schools. We also argue for further incorporation of student voices in development of AI policies in their schools.
IDC ’25, Reykjavik, Iceland
</summary>
<dc:date>2025-06-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bird: A Point Cursor for Virtual Immersive Environments</title>
<link href="https://hdl.handle.net/1721.1/164375" rel="alternate"/>
<author>
<name>Simonson, Aubrey</name>
</author>
<author>
<name>Gretton, Dana</name>
</author>
<author>
<name>Harteveld, Casper</name>
</author>
<id>https://hdl.handle.net/1721.1/164375</id>
<updated>2025-12-18T05:48:42Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Bird: A Point Cursor for Virtual Immersive Environments
Simonson, Aubrey; Gretton, Dana; Harteveld, Casper
This paper introduces the Bird, a novel point cursor for immersive virtual environments (IVEs) that enables precise, one-handed control over a point in 3D space beyond arm’s reach. Interaction techniques commonly used in VR today lack this functionality. While direct manipulation allows for control of the position of an object in 3D space, it is limited to arm’s reach. Ray-casting enables interaction at a distance but specifies a line rather than a point, making it impossible to move objects closer or farther without additional mechanics. The Bird overcomes these limitations by allowing users to select any visible object and place it anywhere within view, with one hand and without requiring a controller. We explore a range of use cases that highlight the Bird’s potential to expand the design space for spatial computing.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>On Approximability of Satisfiable &#119896;-CSPs: V</title>
<link href="https://hdl.handle.net/1721.1/164374" rel="alternate"/>
<author>
<name>Bhangale, Amey</name>
</author>
<author>
<name>Khot, Subhash</name>
</author>
<author>
<name>Minzer, Dor</name>
</author>
<id>https://hdl.handle.net/1721.1/164374</id>
<updated>2025-12-18T05:48:59Z</updated>
<published>2025-06-15T00:00:00Z</published>
<summary type="text">On Approximability of Satisfiable &#119896;-CSPs: V
Bhangale, Amey; Khot, Subhash; Minzer, Dor
We propose a framework of algorithm vs. hardness for all Max-CSPs and demonstrate it for a large class of predicates. This framework extends the work of Raghavendra [STOC, 2008], who showed a similar result for almost satisfiable Max-CSPs. Our framework is based on a new hybrid approximation algorithm, which uses a combination of the Gaussian elimination technique (i.e., solving a system of linear equations over an Abelian group) and the semidefinite programming relaxation. We complement our algorithm with a matching dictator vs. quasirandom test that has perfect completeness. The analysis of our dictator vs. quasirandom test is based on a novel invariance principle, which we call the mixed invariance principle. Our mixed invariance principle is an extension of the invariance principle of Mossel, O’Donnell and Oleszkiewicz [Annals of Mathematics, 2010] which plays a crucial role in Raghavendra’s work. The mixed invariance principle allows one to relate 3-wise correlations over discrete probability spaces with expectations over spaces that are a mixture of Guassian spaces and Abelian groups, and may be of independent interest.
STOC ’25, Prague, Czechia
</summary>
<dc:date>2025-06-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fewer Than 1% of Explainable AI Papers Validate Explainability with Humans</title>
<link href="https://hdl.handle.net/1721.1/164373" rel="alternate"/>
<author>
<name>Suh, Ashley</name>
</author>
<author>
<name>Hurley, Isabelle</name>
</author>
<author>
<name>Smith, Nora</name>
</author>
<author>
<name>Siu, Ho Chit</name>
</author>
<id>https://hdl.handle.net/1721.1/164373</id>
<updated>2025-12-18T05:48:45Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Fewer Than 1% of Explainable AI Papers Validate Explainability with Humans
Suh, Ashley; Hurley, Isabelle; Smith, Nora; Siu, Ho Chit
This late-breaking work presents a large-scale analysis of explainable AI (XAI) literature to evaluate claims of human explainability. We collaborated with a professional librarian to identify 18,254 papers containing keywords related to explainability and interpretability. Of these, we find that only 253 papers included terms suggesting human involvement in evaluating an XAI technique, and just 128 of those conducted some form of a human study. In other words, fewer than 1% of XAI papers (0.7%) provide empirical evidence of human explainability when compared to the broader body of XAI literature. Our findings underscore a critical gap between claims of human explainability and evidence-based validation, raising concerns about the rigor of XAI research. We call for increased emphasis on human evaluations in XAI studies and provide our literature search methodology to enable both reproducibility and further investigation into this widespread issue.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Characteristics of Driver Peripheral Vision: How Drivers Respond to Ubiquitous Information on Wide-Area In-Vehicle Displays</title>
<link href="https://hdl.handle.net/1721.1/164372" rel="alternate"/>
<author>
<name>Huang, Hongwei</name>
</author>
<author>
<name>Li, Jiateng</name>
</author>
<author>
<name>Feng, Xuejing</name>
</author>
<author>
<name>Ma, Jun</name>
</author>
<author>
<name>Mehler, Bruce</name>
</author>
<id>https://hdl.handle.net/1721.1/164372</id>
<updated>2025-12-18T05:48:47Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Characteristics of Driver Peripheral Vision: How Drivers Respond to Ubiquitous Information on Wide-Area In-Vehicle Displays
Huang, Hongwei; Li, Jiateng; Feng, Xuejing; Ma, Jun; Mehler, Bruce
Despite advancements in In-Vehicle Information Systems (IVIS) and extensive research on screen layouts, the influence of drivers’ peripheral vision on interactions with evolving multi-screen and large display technologies remains poorly understood. This study examines drivers’ responses to in-vehicle interactive information through peripheral vision, aiming to optimize visual interaction efficiency and enhance driving safety. Analyzing data from 216 participants in a driving simulator, we explored how horizontal eccentricity, screen type, cognitive load, visual crowding, and stimulus type affect perception rates and reaction times. Our findings highlight the significance of these factors and the need for driver-centered design. The results suggest designing IVIS that align with natural visual tendencies to improve interaction efficiency and driving safety.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Guiding Evolutionary AutoEncoder Training with Activation-Based Pruning Operators</title>
<link href="https://hdl.handle.net/1721.1/164371" rel="alternate"/>
<author>
<name>Jorgensen, Steven</name>
</author>
<author>
<name>Hemberg, Erik</name>
</author>
<author>
<name>Toutouh, Jamal</name>
</author>
<author>
<name>O'Reilly, Una-May</name>
</author>
<id>https://hdl.handle.net/1721.1/164371</id>
<updated>2025-12-18T05:48:34Z</updated>
<published>2025-07-13T00:00:00Z</published>
<summary type="text">Guiding Evolutionary AutoEncoder Training with Activation-Based Pruning Operators
Jorgensen, Steven; Hemberg, Erik; Toutouh, Jamal; O'Reilly, Una-May
This study explores a novel approach to neural network pruning using evolutionary computation, focusing on simultaneously pruning the encoder and decoder of an autoencoder. We introduce two new mutation operators that use layer activations to guide weight pruning. Our findings reveal that one of these activation-informed operators outperforms random pruning, resulting in more efficient autoencoders with comparable performance to canonically trained models. Prior work has established that autoencoder training is effective and scalable with a spatial coevolutionary algorithm that cooperatively coevolves a population of encoders with a population of decoders, rather than one autoencoder. We evaluate how the same activity-guided mutation operators transfer to this context. We find that random pruning is better than guided pruning, in the coevolutionary setting. This suggests activation-based guidance proves more effective in low-dimensional pruning environments, where constrained sample spaces can lead to deviations from true uniformity in randomization. Conversely, population-driven strategies enhance robustness by expanding the total pruning dimensionality, achieving statistically uniform randomness that better preserves system dynamics. We experiment with pruning according to different schedules and present best combinations of operator and schedule for the canonical and coevolving populations cases.
GECCO ’25, July 14–18, 2025, Malaga, Spain
</summary>
<dc:date>2025-07-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mirai: A Wearable Proactive AI "Inner-Voice" for Contextual Nudging</title>
<link href="https://hdl.handle.net/1721.1/164370" rel="alternate"/>
<author>
<name>Fang, Cathy Mengying</name>
</author>
<author>
<name>Samaradivakara, Yasith</name>
</author>
<author>
<name>Maes, Pattie</name>
</author>
<author>
<name>Nanayakkara, Suranga</name>
</author>
<id>https://hdl.handle.net/1721.1/164370</id>
<updated>2025-12-18T05:48:37Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Mirai: A Wearable Proactive AI "Inner-Voice" for Contextual Nudging
Fang, Cathy Mengying; Samaradivakara, Yasith; Maes, Pattie; Nanayakkara, Suranga
People often find it difficult to turn their intentions into real actions—a challenge that affects both personal growth and mental well-being. While established methods like cognitive-behavioral therapy and mindfulness training help people become more aware of their behaviors and set clear goals, these approaches cannot provide immediate guidance when people fall into automatic reactions or habits. We introduce Mirai, a novel wearable AI system with an integrated camera, real-time speech processing, and personalized voice-cloning to provide proactive and contextual nudges for positive behavior change. Mirai continuously monitors and analyzes the user’s environment to anticipate their intentions, generating contextually-appropriate responses delivered in the user’s own cloned voice. We demonstrate the application of Mirai through three scenarios focusing on dietary choices, work productivity, and communication skills. We also discuss future work on improving the proactive agent via human feedback and the need for a longitudinal study in naturalistic settings.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>9.301J Neural Plasticity in Learning and Development, Spring 2002</title>
<link href="https://hdl.handle.net/1721.1/164369" rel="alternate"/>
<author>
<name>Miller, Earl K</name>
</author>
<author>
<name>Liu, Guosong</name>
</author>
<author>
<name>Wilson, Matthew A.</name>
</author>
<author>
<name>Tonegawa, Susumu</name>
</author>
<author>
<name>Quinn, William</name>
</author>
<id>https://hdl.handle.net/1721.1/164369</id>
<updated>2025-12-17T00:09:23Z</updated>
<published>2002-01-01T00:00:00Z</published>
<summary type="text">9.301J Neural Plasticity in Learning and Development, Spring 2002
Miller, Earl K; Liu, Guosong; Wilson, Matthew A.; Tonegawa, Susumu; Quinn, William
Roles of neural plasticity in learning and memory and in development of invertebrates and mammals. An in-depth critical analysis of current literature of molecular, cellular, genetic, electrophysiological, and behavioral studies. Discussion of original papers supplemented by introductory lectures.
</summary>
<dc:date>2002-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>9.110J Neurology, Neuropsychology, and Neurobiology of Aging. Spring 2005</title>
<link href="https://hdl.handle.net/1721.1/164368" rel="alternate"/>
<author>
<name>Corkin, Suzanne Hammond</name>
</author>
<author>
<name>Ingram, Vernon M.</name>
</author>
<id>https://hdl.handle.net/1721.1/164368</id>
<updated>2025-12-17T00:04:31Z</updated>
<published>2005-01-01T00:00:00Z</published>
<summary type="text">9.110J Neurology, Neuropsychology, and Neurobiology of Aging. Spring 2005
Corkin, Suzanne Hammond; Ingram, Vernon M.
Lectures and discussions in this course cover the clinical, behavioral, and molecular aspects of the brain aging processes in humans. Topics include the loss of memory and other cognitive abilities in normal aging, as well as neurodegenerative conditions such as Parkinson’s and Alzheimer’s diseases. Discussions based on readings taken from primary literature explore the current research in this field.
</summary>
<dc:date>2005-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>9.18 Developmental Neurobiology, Spring 2005</title>
<link href="https://hdl.handle.net/1721.1/164367" rel="alternate"/>
<author>
<name>Nedivi, Elly</name>
</author>
<id>https://hdl.handle.net/1721.1/164367</id>
<updated>2025-12-17T00:00:42Z</updated>
<published>2005-01-01T00:00:00Z</published>
<summary type="text">9.18 Developmental Neurobiology, Spring 2005
Nedivi, Elly
This course considers molecular control of neural specification, formation of neuronal connections, construction of neural systems, and the contributions of experience to shaping brain structure and function. Topics include: neural induction and pattern formation, cell lineage and fate determination, neuronal migration, axon guidance, synapse formation and stabilization, activity-dependent development and critical periods, development of behavior.
</summary>
<dc:date>2005-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>9.013J Cell and Molecular Neurobiology, Spring 2008</title>
<link href="https://hdl.handle.net/1721.1/164366" rel="alternate"/>
<author>
<name>Constantine-Paton, Martha</name>
</author>
<author>
<name>Sheng, Morgan Hwa-Tze</name>
</author>
<author>
<name>Quinn, William</name>
</author>
<id>https://hdl.handle.net/1721.1/164366</id>
<updated>2025-12-17T17:54:04Z</updated>
<published>2008-01-01T00:00:00Z</published>
<summary type="text">9.013J Cell and Molecular Neurobiology, Spring 2008
Constantine-Paton, Martha; Sheng, Morgan Hwa-Tze; Quinn, William
This course explores the major areas of cellular and molecular neurobiology, including excitable cells and membranes, ion channels and receptors, synaptic transmission, cell-type determination, axon guidance, neuronal cell biology, neurotrophin signaling and cell survival, synapse formation and neural plasticity. Material includes lectures and exams, and involves presentation and discussion of primary literature. It focuses on major concepts and recent advances in experimental neuroscience.
</summary>
<dc:date>2008-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>9.322J Genetic Neurobiology, Fall 2005</title>
<link href="https://hdl.handle.net/1721.1/164365" rel="alternate"/>
<author>
<name>Littleton, J. Troy</name>
</author>
<author>
<name>Quinn, William</name>
</author>
<id>https://hdl.handle.net/1721.1/164365</id>
<updated>2025-12-16T23:50:34Z</updated>
<published>2005-01-01T00:00:00Z</published>
<summary type="text">9.322J Genetic Neurobiology, Fall 2005
Littleton, J. Troy; Quinn, William
This course deals with the specific functions of neurons, the interactions of neurons in development, and the organization of neuronal ensembles to produce behavior. Topics covered include the analysis of mutations, and molecular analysis of the genes required for nervous system function. In particular, this course focuses on research work done with nematodes, fruit flies, mice, and humans.
</summary>
<dc:date>2005-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>9.19J Cognitive &amp; Behavioral Genetics, Spring 2001</title>
<link href="https://hdl.handle.net/1721.1/164364" rel="alternate"/>
<author>
<name>Nedivi, Elly</name>
</author>
<author>
<name>Pinker, Steven</name>
</author>
<id>https://hdl.handle.net/1721.1/164364</id>
<updated>2025-12-16T23:46:07Z</updated>
<published>2001-01-01T00:00:00Z</published>
<summary type="text">9.19J Cognitive &amp; Behavioral Genetics, Spring 2001
Nedivi, Elly; Pinker, Steven
How genetics can add to our understanding of cognition, language, emotion, personality, and behavior. Use of gene mapping to estimate risk factors for psychological disorders and variation in behavioral and personality traits. Mendelian genetics, genetic mapping techniques, and statistical analysis of large populations and their application to particular studies in behavioral genetics. Topics also include environmental influence on genetic programs, evolutionary genetics, and the larger scientific, social, ethical, and philosophical implications
</summary>
<dc:date>2001-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>5.95J Teaching College-Level Science and Engineering,  Spring 2009</title>
<link href="https://hdl.handle.net/1721.1/164363" rel="alternate"/>
<author>
<name>Mahajan, Sanjoy</name>
</author>
<id>https://hdl.handle.net/1721.1/164363</id>
<updated>2025-12-16T23:41:01Z</updated>
<published>2009-01-01T00:00:00Z</published>
<summary type="text">5.95J Teaching College-Level Science and Engineering,  Spring 2009
Mahajan, Sanjoy
This participatory seminar focuses on the knowledge and skills necessary for teaching science and engineering in higher education. This course is designed for graduate students interested in an academic career, and anyone else interested in teaching. Readings and discussions include: teaching equations for understanding, designing exam and homework questions, incorporating histories of science, creating absorbing lectures, teaching for transfer, the evils of PowerPoint, and planning a course. The subject is appropriate for both novices and those with teaching experience.
</summary>
<dc:date>2009-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.51 Biochemistry, Fall 2001</title>
<link href="https://hdl.handle.net/1721.1/164362" rel="alternate"/>
<author>
<name>Sauer, Robert T</name>
</author>
<author>
<name>Solomon, Frank</name>
</author>
<author>
<name>Baker, Tania</name>
</author>
<id>https://hdl.handle.net/1721.1/164362</id>
<updated>2025-12-17T17:55:19Z</updated>
<published>2001-01-01T00:00:00Z</published>
<summary type="text">7.51 Biochemistry, Fall 2001
Sauer, Robert T; Solomon, Frank; Baker, Tania
The tools and analytical methods that biochemists use to dissect biological problems. Analysis of the mode of action and structure of regulatory, binding, and catalytic proteins.
</summary>
<dc:date>2001-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.391 Concept-Centered Teaching, Fall 2005</title>
<link href="https://hdl.handle.net/1721.1/164361" rel="alternate"/>
<author>
<name>Khodor, Julia</name>
</author>
<id>https://hdl.handle.net/1721.1/164361</id>
<updated>2025-12-16T23:19:27Z</updated>
<published>2005-01-01T00:00:00Z</published>
<summary type="text">7.391 Concept-Centered Teaching, Fall 2005
Khodor, Julia
Do you like teaching, but find yourself frustrated by how little students seem to learn? Would you like to try teaching, but are nervous about whether you will be any good at it? Are you interested in new research on science education? Research in science education shows that the greatest obstacle to student learning is the failure to identify and confront the misconceptions with which the students enter the class or those that they acquire during their studies. This weekly seminar course focuses on developing the participants’ ability to uncover and confront student misconceptions and to foster student understanding and retention of key concepts. Participants read primary literature on science education, uncover basic concepts often overlooked when teaching biology, and lead a small weekly discussion session for students currently enrolled in introductory biology classes.&#13;
&#13;
The instructor for this course, Dr. Julia Khodor, is a member of the HHMI Education Group.
</summary>
<dc:date>2005-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.391 Concept-Centered Teaching, Spring 2006</title>
<link href="https://hdl.handle.net/1721.1/164360" rel="alternate"/>
<author>
<name>Kosinski-Collins, Melissa</name>
</author>
<id>https://hdl.handle.net/1721.1/164360</id>
<updated>2025-12-16T23:14:32Z</updated>
<published>2006-01-01T00:00:00Z</published>
<summary type="text">7.391 Concept-Centered Teaching, Spring 2006
Kosinski-Collins, Melissa
Do you like teaching, but find yourself frustrated by how little students seem to learn? Would you like to try teaching, but are nervous about whether you will be any good at it? Are you interested in new research on science education? Research in science education shows that the greatest obstacle to student learning is the failure to identify and confront the misconceptions with which the students enter the class or those that they acquire during their studies. This weekly seminar course focuses on developing the participants’ ability to uncover and confront student misconceptions and to foster student understanding and retention of key concepts. Participants read primary literature on science education, uncover basic concepts often overlooked when teaching biology, and lead a small weekly discussion session for students currently enrolled in introductory biology classes.&#13;
&#13;
The instructor for this course, Dr. Kosinski-Collins, is a member of the HHMI Education Group.
</summary>
<dc:date>2006-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>20.010J Introduction to Bioengineering (BE.010J), Spring 2006</title>
<link href="https://hdl.handle.net/1721.1/164359" rel="alternate"/>
<author>
<name>Lauffenburger, Douglas A</name>
</author>
<author>
<name>Matsudaira, Paul T.</name>
</author>
<author>
<name>Belcher, Angela M</name>
</author>
<id>https://hdl.handle.net/1721.1/164359</id>
<updated>2025-12-16T23:10:25Z</updated>
<published>2006-01-01T00:00:00Z</published>
<summary type="text">20.010J Introduction to Bioengineering (BE.010J), Spring 2006
Lauffenburger, Douglas A; Matsudaira, Paul T.; Belcher, Angela M
Bioengineering at MIT is represented by the diverse curricula offered by most Departments in the School of Engineering. This course samples the wide variety of bioengineering options for students who plan to major in one of the undergraduate Engineering degree programs. The beginning lectures describe the science basis for bioengineering with particular emphasis on molecular cell biology and systems biology. Bioengineering faculty will then describe the bioengineering options in a particular engineering course as well as the type of research conducted by faculty in the department,
</summary>
<dc:date>2006-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.347 Epigenetic Regulation of Stem Cells, Spring 2014</title>
<link href="https://hdl.handle.net/1721.1/164358" rel="alternate"/>
<author>
<name>Williams, Eric O</name>
</author>
<author>
<name>Subramanian, Vidya</name>
</author>
<id>https://hdl.handle.net/1721.1/164358</id>
<updated>2025-12-16T22:53:33Z</updated>
<published>2014-01-01T00:00:00Z</published>
<summary type="text">7.347 Epigenetic Regulation of Stem Cells, Spring 2014
Williams, Eric O; Subramanian, Vidya
During development a single totipotent cell gives rise to the vast array of cell types present in the adult human body, yet each cell has essentially the same DNA sequence. As cells differentiate, distinct sets of genes must be coordinately activated and repressed, ultimately leading to a cell-type specific pattern of gene expression and a particular cell fate. In eukaryotic organisms, DNA is packaged in a complex protein super structure known as chromatin. Modification and reorganization of chromatin play a critical role in coordinating the cell-type specific gene expression programs that are required as a cell transitions from a pluripotent stem cell to a fully differentiated cell type. Epigenetics refers to such heritable changes that occur in chromatin without altering the primary DNA sequence. This class will focus on the role of epigenetic regulation with respect to developmental fate and also consider the fact that the epigenetic mechanisms discussed have broad implications, including how seemingly normal cells can be transformed into cancerous cells.&#13;
&#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2014-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Structural Tuning of Self‐Conductive Polymer as Gas Diffusion Layer for Electrocatalytic Reactions at High Current</title>
<link href="https://hdl.handle.net/1721.1/164357" rel="alternate"/>
<author>
<name>Noh, Hwiyoon</name>
</author>
<author>
<name>Lee, Tae Hoon</name>
</author>
<author>
<name>Ahn, Sang Hyun</name>
</author>
<author>
<name>Davis, Jonathan T</name>
</author>
<author>
<name>Jeong, Daecheol</name>
</author>
<author>
<name>Gounder, Rajamani</name>
</author>
<author>
<name>Smith, Zachary P</name>
</author>
<author>
<name>Boudouris, Bryan W</name>
</author>
<author>
<name>Tackett, Brian M</name>
</author>
<id>https://hdl.handle.net/1721.1/164357</id>
<updated>2026-04-14T03:37:32Z</updated>
<published>2025-10-21T00:00:00Z</published>
<summary type="text">Structural Tuning of Self‐Conductive Polymer as Gas Diffusion Layer for Electrocatalytic Reactions at High Current
Noh, Hwiyoon; Lee, Tae Hoon; Ahn, Sang Hyun; Davis, Jonathan T; Jeong, Daecheol; Gounder, Rajamani; Smith, Zachary P; Boudouris, Bryan W; Tackett, Brian M
Electrocatalytic conversions offer a promising route for sustainable chemical production using renewable energy. Gas diffusion layers (GDLs) enable selective product formation at high current densities but suffer from electrolyte flooding, and polytetrafluoroethylene (PTFE)-based GDLs typically require metal conductive layers, which constrain catalyst development. A recently developed GDL configuration, electropolymerized poly(3,4-ethylenedioxythiophene) (PEDOT)-coated PTFE, demonstrates notable flooding resistance, but suffers from gas diffusion limitations at elevated currents due to limited gas diffusion through the PEDOT layer. Here, different dopants in PEDOT are exploited to modify the physical properties and enhance gas transport. ClO4−-doped PEDOT exhibits superior performance due to optimized physical structure, leading to increased gas permeance and faradaic efficiency (FE) for CO production during electrocatalytic CO2 reduction. Further optimization of coverage and thickness achieved by adjusting charge density led to an optimal configuration at 33 mC cm−2. This GDL supports various metal electrocatalysts and demonstrates FECO of &gt; 90% for over 150 h at −200 mA cm−2 using a commercial silver electrocatalyst. This work highlights the importance of GDL engineering in enhancing performance and durability for long-term electrocatalytic processes.
</summary>
<dc:date>2025-10-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Navigating Emotions Through Art</title>
<link href="https://hdl.handle.net/1721.1/164356" rel="alternate"/>
<author>
<name>Wu, Christine</name>
</author>
<author>
<name>Kumar, Ila</name>
</author>
<author>
<name>Picard, Rosalind</name>
</author>
<id>https://hdl.handle.net/1721.1/164356</id>
<updated>2026-04-14T03:19:51Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Navigating Emotions Through Art
Wu, Christine; Kumar, Ila; Picard, Rosalind
In this study, we design and deploy a novel system to examine the safety and efficacy of using a chatbot to conduct aspects of art therapy with youth who have experienced developmental trauma, focusing on supporting emotion identification, processing, and expression. This publication describes phase one, gathering feedback on the system from practicing art therapists (n = 17) and making recommendations for how to evolve such work in beneficial ways to meet the needs of trauma-impacted youth. Our findings highlight the potential value of chatbots for trauma-impacted youth as well as important reflection questions these chatbots should ask. Additionally, the study discusses the risk of harm associated with chatbot interventions, particularly if the conversation brings up negative emotions that the chatbot fails to help process. Finally, we end by presenting a set of practitioner-driven recommendations for chatbot designers who are interested in helping trauma-impacted youth understand and cope with their emotions, leveraging art therapy techniques.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bridging Tradition and Technology: Human-AI Interface for Exploration and Co-Creation of Classical Dance Heritage</title>
<link href="https://hdl.handle.net/1721.1/164355" rel="alternate"/>
<author>
<name>Pataranutaporn, Pat</name>
</author>
<author>
<name>Archiwaranguprok, Chayapatr</name>
</author>
<author>
<name>Bhongse-tong, Piyaporn</name>
</author>
<author>
<name>Maes, Pattie</name>
</author>
<author>
<name>Klunchun, Pichet</name>
</author>
<id>https://hdl.handle.net/1721.1/164355</id>
<updated>2026-04-14T03:19:46Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Bridging Tradition and Technology: Human-AI Interface for Exploration and Co-Creation of Classical Dance Heritage
Pataranutaporn, Pat; Archiwaranguprok, Chayapatr; Bhongse-tong, Piyaporn; Maes, Pattie; Klunchun, Pichet
This paper introduces Text2Tradition, a system designed to bridge the epistemological gap between modern language processing and traditional dance knowledge by translating user-generated prompts into Thai classical dance repertoire. Our system interprets user prompts through the lens of Mae Bot Yai—the 59 foundational movements constituting the vocabulary of traditional Thai dance—and incorporates six choreographic elements that encode centuries of cultural knowledge. This research explores the fertile tension between two knowledge systems: the embodied, culturally-specific wisdom of traditional dance and the data-driven, statistically-derived, and often Western-centric intelligence of LLMs. By mediating between these epistemologies, we highlight the potential of AI-mediated systems not only to preserve traditional forms but also to foster new cultural co-creations, suggesting that these tensions can be harnessed to stimulate cultural dialogue and innovation.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Write-Optimized Distributed B+Tree Index on Disaggregated Memory</title>
<link href="https://hdl.handle.net/1721.1/164354" rel="alternate"/>
<author>
<name>Kraska, Tim</name>
</author>
<id>https://hdl.handle.net/1721.1/164354</id>
<updated>2026-04-14T03:19:37Z</updated>
<published>2025-04-15T00:00:00Z</published>
<summary type="text">A Write-Optimized Distributed B+Tree Index on Disaggregated Memory
Kraska, Tim
If it were possible to scale memory independently from compute, it would be feasible to dynamically adjust the amount of memory based on the workload. It would further enable better resource utilization. Consider a dynamic workload regarding the number of queries but with very strict response time requirements, which can only be met, if data is kept in-memory. In this case, the separation of compute and memory would enable to scale the compute with the number of queries while keeping all the data constantly in-memory. This design principle is already used by services such as Google, which keeps the entire web-index in-memory.
</summary>
<dc:date>2025-04-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Data-Driven AI Avatars for Valuation in Dating Scenarios</title>
<link href="https://hdl.handle.net/1721.1/164353" rel="alternate"/>
<author>
<name>Baradari, D?nya</name>
</author>
<author>
<name>Polimetla, Tejaswi</name>
</author>
<author>
<name>Maes, Pattie</name>
</author>
<id>https://hdl.handle.net/1721.1/164353</id>
<updated>2026-04-14T03:19:38Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Data-Driven AI Avatars for Valuation in Dating Scenarios
Baradari, D?nya; Polimetla, Tejaswi; Maes, Pattie
Dating applications facilitate partner selection by presenting curated information about potential matches. However, traditional dating profiles often fail to convey the depth of a person’s personality, communication style, and lived experience, leading to inefficiencies in the match-finding process. This work-in-progress study introduces and evaluates two novel, data-driven dating interfaces: (1) a Data Dashboard, which aggregates and visualizes insights from a user’s digital footprint, and (2) an AI Avatar, an interactive, voice-enabled model using personal data to simulate real-world interactions. A user study with nine participants comparing these interfaces against traditional dating profiles reveals that the Data Dashboard enables more accurate personality assessments but imposes a high cognitive load. Meanwhile, the AI Avatar enhances engagement and enjoyability but raises concerns about trust and emotional investment. Our findings highlight the challenge of maintaining authenticity in AI-mediated interactions and bridging the gap between digital and real-life personas.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cultivating a Supportive Sphere: Designing Technology to Increase Social Support for Foster-Involved Youth</title>
<link href="https://hdl.handle.net/1721.1/164352" rel="alternate"/>
<author>
<name>Kumar, Ila</name>
</author>
<author>
<name>Ferguson, Craig</name>
</author>
<author>
<name>Wu, Jiayi</name>
</author>
<author>
<name>Picard, Rosalind</name>
</author>
<id>https://hdl.handle.net/1721.1/164352</id>
<updated>2026-04-14T03:19:43Z</updated>
<published>2025-05-02T00:00:00Z</published>
<summary type="text">Cultivating a Supportive Sphere: Designing Technology to Increase Social Support for Foster-Involved Youth
Kumar, Ila; Ferguson, Craig; Wu, Jiayi; Picard, Rosalind
Approximately 400,000 youth in the US are living in foster care due to experiences with abuse or neglect at&#13;
home [17]. For multiple reasons, these youth often don’t receive adequate social support from those around&#13;
them. Despite technology’s potential, very little work has explored how these tools can provide more support&#13;
to foster-involved youth. To begin to fill this gap, we worked with current and former foster-involved youth&#13;
to develop the first digital tool that aims to increase social support for this population, creating a novel system&#13;
in which users complete reflective check-ins in an online community setting. We then conducted a pilot study&#13;
with 15 current and former foster-involved youth, comparing the effect of using the app for two weeks to&#13;
two weeks of no intervention. We collected qualitative and quantitative data, which demonstrated that this&#13;
type of interface can provide youth with types of social support that are often not provided by foster care&#13;
services and other digital interventions. The paper details the motivation behind the app, the trauma-informed&#13;
design process, and insights gained from this initial evaluation study. Finally, the paper concludes with&#13;
recommendations for designing digital tools that effectively provide social support to foster-involved youth.
</summary>
<dc:date>2025-05-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Allocation Multiplicity: Evaluating the Promises of the Rashomon Set</title>
<link href="https://hdl.handle.net/1721.1/164351" rel="alternate"/>
<author>
<name>Jain, Shomik</name>
</author>
<author>
<name>Wang, Margaret</name>
</author>
<author>
<name>Creel, Kathleen</name>
</author>
<author>
<name>Wilson, Ashia</name>
</author>
<id>https://hdl.handle.net/1721.1/164351</id>
<updated>2026-04-14T03:20:13Z</updated>
<published>2025-06-23T00:00:00Z</published>
<summary type="text">Allocation Multiplicity: Evaluating the Promises of the Rashomon Set
Jain, Shomik; Wang, Margaret; Creel, Kathleen; Wilson, Ashia
The Rashomon set of equally-good models promises less discriminatory algorithms, reduced outcome homogenization, and fairer decisions through model ensembles or reconciliation. However, we argue from the perspective of allocation multiplicity that these promises may remain unfulfilled. When there are more qualified candidates than resources available, many different allocations of scarce resources can achieve the same utility. This space of equal-utility allocations may not be faithfully reflected by the Rashomon set, as we show in a case study of healthcare allocations. We attribute these unfulfilled promises to several factors: limitations in empirical methods for sampling from the Rashomon set, the standard practice of deterministically selecting individuals with the lowest risk, and structural biases that cause all equally-good models to view some qualified individuals as inherently risky.
FAccT ’25, Athens, Greece
</summary>
<dc:date>2025-06-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interactive Sketchpad: A Multimodal Tutoring System for Collaborative, Visual Problem-Solving</title>
<link href="https://hdl.handle.net/1721.1/164350" rel="alternate"/>
<author>
<name>Lee, Jimin</name>
</author>
<author>
<name>Chen, Steven-Shine</name>
</author>
<author>
<name>Liang, Paul Pu</name>
</author>
<id>https://hdl.handle.net/1721.1/164350</id>
<updated>2026-04-14T03:19:47Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Interactive Sketchpad: A Multimodal Tutoring System for Collaborative, Visual Problem-Solving
Lee, Jimin; Chen, Steven-Shine; Liang, Paul Pu
Humans have long relied on visual aids like sketches and diagrams to support reasoning and problem-solving. Visual tools, like auxiliary lines in geometry or graphs in calculus, are essential for understanding complex ideas. However, many tutoring systems remain text-based, providing feedback only through natural language. Leveraging recent advances in Large Multimodal Models (LMMs), this paper introduces Interactive Sketchpad, a tutoring system that combines language-based explanations with interactive visualizations to enhance learning. Built on a pre-trained LMM, Interactive Sketchpad is fine-tuned to provide step-by-step guidance in both text and visuals, enabling natural multimodal interaction with the student. Accurate and robust diagrams are generated by incorporating code execution into the reasoning process. User studies conducted on math problems such as geometry, calculus, and trigonometry demonstrate that Interactive Sketchpad leads to improved task comprehension, problem-solving accuracy, and engagement levels, highlighting its potential for transforming educational technologies. All code is available at: https://stevenshinechen.github.io/interactivesketchpad/.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Meeting at Crossroads: An exploration of playful listening through a co-creative AI game</title>
<link href="https://hdl.handle.net/1721.1/164349" rel="alternate"/>
<author>
<name>Lee, Cassandra</name>
</author>
<author>
<name>Dimitrakopoulou, Dimitra</name>
</author>
<author>
<name>Roy, Deb</name>
</author>
<id>https://hdl.handle.net/1721.1/164349</id>
<updated>2026-04-14T03:19:52Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Meeting at Crossroads: An exploration of playful listening through a co-creative AI game
Lee, Cassandra; Dimitrakopoulou, Dimitra; Roy, Deb
Active listening is a well-established cornerstone of empathetic communication and a hallmark of “civic competence”, but is a challenging and energy consuming skill. Games offer a provocative lens to consider how active listening could be explored playfully. In this paper, we present Crossroads, an interactive social game which makes active listening fun by inviting players to co-create images about one another’s personal experiences. Deployed through a tablet-mobile web app, players take turns acting in ‘listener roles’ to generate AI images, and eventually uncover a collective picture along a “crossroad” shaped map. An initial mixed-method evaluation with 36 users demonstrates that players find the experience highly engaging and feel especially heard during in-game conversations. This work contributes a novel game which uses AI to mediate empathetic dialogue, and surfaces questions about the trade-offs of gamifying listening.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Atmospheric Impacts of Hydrogen as an Aviation Fuel</title>
<link href="https://hdl.handle.net/1721.1/164348" rel="alternate"/>
<author>
<name>Gibney, Evan M.</name>
</author>
<id>https://hdl.handle.net/1721.1/164348</id>
<updated>2025-12-17T03:06:42Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Atmospheric Impacts of Hydrogen as an Aviation Fuel
Gibney, Evan M.
Hydrogen is being investigated as a promising zero-carbon aviation fuel, offering the potential to eliminate direct CO₂ emissions while being produced with low lifecycle greenhouse gas emissions. Despite these benefits, there are additional indirect climate and air quality costs associated with direct hydrogen emissions which are often overlooked. We quantify the perturbation in the atmospheric composition associated with the introduction of hydrogen-fueled aircraft, broadening the current understanding of the non-CO₂ effects of these fleets. We use the GEOS-Chem High Performance (GCHP) global chemistry-transport model to conduct a spatially discretized, multi-year impact assessment of the atmospheric impacts of hydrogen-fueled aviation. We implement a flux surface boundary condition for hydrogen to provide an improved representation of the soil sink, relative to the default fixed boundary condition. This results in a net surface exchange of-16.7 Tg H₂ per year. Two hydrogen scenarios are evaluated using the updated GCHP implementation, which are representative of a high and low mitigation scenario for direct hydrogen emission rates. For the two scenarios, respectively, we observe increases in the mean atmospheric methane mixing ratio of 3.34 ppbv and 10.7 ppbv, corresponding to an increased methane lifetime of between 0.24% and 0.77%, respectively. The increased methane lifetime as well as in-situ oxidation of stratospheric hydrogen results in an increased stratospheric water vapor burden of 0.42 Tg and 2.3 Tg (or 0.052% and 0.28%) for the high and low mitigation scenarios, respectively. Additionally, we show the perturbation to tropospheric ozone levels to be between-0.047% and +0.30%, where the decreased ozone results from the removal of NOₓ emissions associated with fuel cells and low hydrogen emission rates. This analysis provides the foundation for understanding the implications of potential future hydrogen-based aviation fleets on climate and air quality.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Changing Climate Beneath Our Feet: How plant and microbial life in tropical soils are shifting and what that could mean for the future of our warming planet</title>
<link href="https://hdl.handle.net/1721.1/164347" rel="alternate"/>
<author>
<name>Ocharoenchai, Nanticha</name>
</author>
<id>https://hdl.handle.net/1721.1/164347</id>
<updated>2025-12-17T03:06:34Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A Changing Climate Beneath Our Feet: How plant and microbial life in tropical soils are shifting and what that could mean for the future of our warming planet
Ocharoenchai, Nanticha
Discussions about climate change and carbon sequestration have largely revolved around plant structures we can easily see, like leaves that absorb CO₂ for photosynthesis and woody trunks that store carbon as biomass. Carbon credits that companies and consumers buy to compensate for emissions they’ve produced are primarily calculated based on these parts, as are models that predict climate change impacts. But researchers are now beginning to understand that what we see aboveground is only part of the equation. The other part lies beneath our feet in an intricate, expansive, covert realm where plant roots, microbial communities and soil dynamics interact. These belowground systems are crucial for cycling carbon through the Earth and regulating the climate, but relatively little is known about them compared to aboveground systems. This is especially true in tropical regions, where one-third of the world’s terrestrial carbon storage lies. However, these systems are evolving quickly with climate change, contradicting what models have previously projected. With so many global decisions based on such models, these uncertainties hold planetary significance for our future. A group of scientists is climbing an uphill battle, racing against time to understand this understudied field.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Engineering Winter</title>
<link href="https://hdl.handle.net/1721.1/164346" rel="alternate"/>
<author>
<name>White, Mackenzie</name>
</author>
<id>https://hdl.handle.net/1721.1/164346</id>
<updated>2025-12-17T03:06:43Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Engineering Winter
White, Mackenzie
As winters warm and snowfall becomes less reliable, ski resorts worldwide increasingly depend on artificial snow to stay open. Snowmaking, once a stopgap, has become the backbone of entire seasons in a sprawling choreography of pumps and pressurized mist designed to hold trails together. At resorts like Vermont’s Bromley Mountain, snowmakers work through the night, drawing millions of gallons from limited reservoirs and operating within narrowing windows of cold air. What emerges is a portrait of winter in transition: less predictable, more expensive, increasingly manufactured. The efforts to preserve winter recreation carry growing costs in energy, water, and equitable access. Many smaller, independent ski areas struggle to meet the demands of climate adaptation, while larger resorts expand their operations, widening the divide in who can afford to sustain operations. In the American West, where rivers depend heavily on snowpack melt, the spread of snowmaking ties winter recreation to a water system already under immense strain. As artificial snow becomes the norm, winter is increasingly a season bought, built, and rationed, raising the question of whether attempts to keep the season alive are accelerating the changes that threaten to erase it.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Influence of Electronic Structure and Lattice Dynamics on Oxygen Ion Transport in Solid-State Ionic Conductors</title>
<link href="https://hdl.handle.net/1721.1/164345" rel="alternate"/>
<author>
<name>Vivona, Daniele</name>
</author>
<id>https://hdl.handle.net/1721.1/164345</id>
<updated>2025-12-17T03:03:54Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Influence of Electronic Structure and Lattice Dynamics on Oxygen Ion Transport in Solid-State Ionic Conductors
Vivona, Daniele
Solid-state oxygen ion conductors are crucial for electrochemical devices such as separation membranes, solid-oxide electrolyzers, fuel cells, and sensors, serving as a technological link between renewable energy generation and consumption. Currently, these conductors are limited by slow transport rates and high operational temperatures, which pose challenges and increase costs. Developing faster conductors that operate at lower temperatures requires reducing activation energy and enhancing the pre-exponential factor in the Arrhenius equation of conductivity. However, our understanding of the fundamental processes in oxygen ion transport and methods to improve oxygen ion conductivity remain limited. This thesis focuses on understanding the fundamental mechanisms that regulate oxygen ion transport. First, the migration energy barrier in perovskite oxides is linked to an electronic energy penalty from local charge screening near the hopping ion. The energy of local electronic states is identified as a fundamental descriptor of the migration barrier. Next, migration entropy and phonon density of states (DOS) are highlighted as the main factors regulating the pre-exponential factor of oxygen ion conductivity across different materials. The phonons of oxygen ions near the hopping ion significantly contribute to migration entropy, suggesting that migration entropy can be tuned by designing the phonon dynamics of these atoms. These results imply that a widely observed correlation between increasing pre-exponential factors and activation energy arises from coupling local electronic energy states and phonons. The results are extended to the formation of oxygen vacancies and interstitials in perovskite and RuddlesdenPopper oxides. We find that defect formation energy rises with defect formation entropy, which is linked to electronic energy states interacting with phonons. In perovskite oxides, lower vacancy formation entropy is correlated with increasing oxygen phonon band center and shortening bond lengths with oxygen vacancy formation. In Ruddlesden-Popper oxides, lower interstitial formation entropy is associated with reduced octahedral tilting and local phonon changes. This thesis establishes a theoretical foundation for treating migration entropy and defect formation entropy as design variables in next-generation ionic conductors. By highlighting the impact of electronic structure and lattice dynamics on energy barriers and entropic drivers, the findings suggest new pathways for material design through the strategic separation of these factors and the intelligent design of lattice moieties in oxygen ion transport environments.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.344 Antibiotics, Toxins, and Protein Engineering, Spring 2007</title>
<link href="https://hdl.handle.net/1721.1/164344" rel="alternate"/>
<author>
<name>Koehrer, Caroline</name>
</author>
<author>
<name>Sassanfar, Mandana</name>
</author>
<id>https://hdl.handle.net/1721.1/164344</id>
<updated>2025-12-16T22:59:01Z</updated>
<published>2007-01-01T00:00:00Z</published>
<summary type="text">7.344 Antibiotics, Toxins, and Protein Engineering, Spring 2007
Koehrer, Caroline; Sassanfar, Mandana
The lethal poison Ricin (best known as a weapon of bioterrorism), Diphtheria toxin (the causative agent of a highly contagious bacterial disease), and the widely used antibiotic tetracycline have one thing in common: They specifically target the cell’s translational apparatus and disrupt protein synthesis.&#13;
&#13;
In this course, we will explore the mechanisms of action of toxins and antibiotics, their roles in everyday medicine, and the emergence and spread of drug resistance. We will also discuss the identification of new drug targets and how we can manipulate the protein synthesis machinery to provide powerful tools for protein engineering and potential new treatments for patients with devastating diseases, such as cystic fibrosis and muscular dystrophy.&#13;
&#13;
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
</summary>
<dc:date>2007-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>OpenMC Interpretation of FNS SINBAD Shielding Benchmark Experiments</title>
<link href="https://hdl.handle.net/1721.1/164343" rel="alternate"/>
<author>
<name>Ebiwonjumi, Bamidele</name>
</author>
<author>
<name>Segantin, Stefano</name>
</author>
<author>
<name>Peterson, Ethan</name>
</author>
<id>https://hdl.handle.net/1721.1/164343</id>
<updated>2026-04-14T03:37:27Z</updated>
<published>2025-01-02T00:00:00Z</published>
<summary type="text">OpenMC Interpretation of FNS SINBAD Shielding Benchmark Experiments
Ebiwonjumi, Bamidele; Segantin, Stefano; Peterson, Ethan
The Fusion Neutron Source (FNS) clean benchmark experiments on tungsten, vanadium, and beryllium assemblies from the SINBAD (Shielding Integral Benchmark Archive and Database) are analyzed to experimentally validate OpenMC (version 0.14.1-dev) fusion neutronics capabilities. The assemblies were irradiated with a 14-MeV deuterium-tritium neutron source. Neutron spectra, photon spectra, reaction rates, gamma heating rates (GHRs), and tritium production rates (TPRs) are compared to measured data in the experimental assemblies and MCNP-6.2 results. In the tungsten case, slight overestimations of the experimental data were observed in the neutron spectra, and the photon spectra agreed well with the experiments. Most of the GHRs agreed with the measured data within the range of experimental uncertainty in the tungsten and vanadium assemblies. In the vanadium assembly, the calculated neutron spectra underestimated the experiments in the low energy region while the photon spectra were well calculated when compared to experiments. The most noticeable discrepancies with experimental data in the gamma heating were observed at detector positions closest to the source. For the reaction rates, notable discrepancies with experimental data were seen at the front and rear of the assemblies. Compared to experiments, the OpenMC neutron spectra were well predicted in the beryllium assembly, whereas the calculated fission reaction rate and TPRs overestimated the experiments, an observation similar to that which has been reported by other authors. The average, overall calculation-to-experiment ratio (C/E) over nine TPR and seven GHR measurements were 1.03 ± 0.20 and 0.95 ± 0.14, respectively. In the case of verification, the OpenMC results of the benchmark calculations indicated comparable accuracy to MCNP-6.2. In general, the validation exercise showed that OpenMC can be used to analyze the fusion neutronics shielding benchmark problems.
</summary>
<dc:date>2025-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>SoK: Acoustic Side Channels</title>
<link href="https://hdl.handle.net/1721.1/164342" rel="alternate"/>
<author>
<name>Wang, Ping</name>
</author>
<author>
<name>Nagaraja, Shishir</name>
</author>
<author>
<name>Bourquard, Aur?lien</name>
</author>
<author>
<name>Gao, Haichang</name>
</author>
<author>
<name>Yan, Jeff</name>
</author>
<id>https://hdl.handle.net/1721.1/164342</id>
<updated>2026-04-14T03:29:59Z</updated>
<published>2025-11-26T00:00:00Z</published>
<summary type="text">SoK: Acoustic Side Channels
Wang, Ping; Nagaraja, Shishir; Bourquard, Aur?lien; Gao, Haichang; Yan, Jeff
Acoustic side channels (ASCs) have been discovered for several decades, highlighting the tangible security risks posed by unintended  sound emissions from computing and electronic systems. Their existence has drawn considerable attention from researchers, driving  rapid progress in both attack methodologies and defense mechanisms across a wide range of scenarios. In this paper, we provide  a state-of-the-art analysis of ASCs, covering all the significant academic research in the area. First, we clarify existing ambiguities  and conceptual confusion, proposing a clear definition of ASC. Second, we analyse the characteristics of known ASCs, discuss their  security implications, and propose the first taxonomy. Next, we summarize attack techniques, discuss countermeasures, and identify  areas for future research. We also link side channels and inverse problems, two fields that appear to be completely isolated from each  other but have deep connections.
</summary>
<dc:date>2025-11-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Umm Kamel’s Affair: How Infidelity Liberated the Night Sky in Jabal ‘Amil</title>
<link href="https://hdl.handle.net/1721.1/164341" rel="alternate"/>
<author>
<name>Nahleh, Mohamad</name>
</author>
<id>https://hdl.handle.net/1721.1/164341</id>
<updated>2026-04-14T03:37:24Z</updated>
<published>2024-01-02T00:00:00Z</published>
<summary type="text">Umm Kamel’s Affair: How Infidelity Liberated the Night Sky in Jabal ‘Amil
Nahleh, Mohamad
Weakened by the expansion of several imperial and colonial projects, the inhabitants of Jabal ‘Amil survived as second-class citizens, severed from the urban expression of Lebanese nationalism, and having to formulate their identity amid countless transgressions on their scholarship and literary production. It is thus in the spectacles of the universe and the mysteries of the cosmos that they inscribed fragments of their oral legacy, turning the night sky into an archive that no empire could burn or colonize. And yet it is light pollution, leaking from the same cities they were once forced to nourish, that quickly established itself as the main transgressor, clearing the faintest stories in their celestial library. Although distant manifestations of Islamic cosmology could no longer animate their rural nights, new alterations in the sky after dark, no matter how violent, have proven worthy carri-ers of their modern myths and legends. And it is onto the loudest object in their polluted sky, the Israeli reconnaissance drone IAI Searcher MK, that they grafted the tale of their legendary matriarch Umm Kamel. I argue that Umm Kamel’s physical and symbolic ascent into the sky was orchestrated by a modern generation of ‘Amilis whose infidelity to the celestial stories authored by their ancestors fortified their ability to transform the combined pressures of pollution and colonization. United by their efforts to forge new imaginaries around a starless night, they invite reflection on the possibility (and responsibility) of confronting the sky we have together inherited rather than lamenting the one we have lost. In tracing Umm Kamel’s transformation from figure to constellation, I contend that their cosmic interventions set the stage for new alliances between design and darkness, and ultimately, for a more expanded imagination of night design, particularly within the context of the climate crisis.
</summary>
<dc:date>2024-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ophthalmology Optical Coherence Tomography Databases for Artificial Intelligence Algorithm: A Review</title>
<link href="https://hdl.handle.net/1721.1/164340" rel="alternate"/>
<author>
<name>Restrepo, David</name>
</author>
<author>
<name>Quion, Justin Michael</name>
</author>
<author>
<name>Do Carmo Novaes, Frederico</name>
</author>
<author>
<name>Azevedo Costa, Iago Diogenes</name>
</author>
<author>
<name>Vasquez, Constanza</name>
</author>
<author>
<name>Bautista, Alyssa Nicole</name>
</author>
<author>
<name>Quiminiano, Ellaine</name>
</author>
<author>
<name>Lim, Patricia Abigail</name>
</author>
<author>
<name>Mwavu, Roger</name>
</author>
<author>
<name>Celi, Leo Anthony</name>
</author>
<author>
<name>Nakayama, Luis Filipe</name>
</author>
<id>https://hdl.handle.net/1721.1/164340</id>
<updated>2026-04-14T03:37:26Z</updated>
<published>2024-04-02T00:00:00Z</published>
<summary type="text">Ophthalmology Optical Coherence Tomography Databases for Artificial Intelligence Algorithm: A Review
Restrepo, David; Quion, Justin Michael; Do Carmo Novaes, Frederico; Azevedo Costa, Iago Diogenes; Vasquez, Constanza; Bautista, Alyssa Nicole; Quiminiano, Ellaine; Lim, Patricia Abigail; Mwavu, Roger; Celi, Leo Anthony; Nakayama, Luis Filipe
BACKGROUND: Imaging plays a pivotal role in eye assessment. With the introduction of advanced machine learning and artificial intelligence (AI), the focus has shifted to imaging datasets in ophthalmology. While disparities and health inequalities hidden within data are well-documented, the ophthalmology field faces specific challenges to the creation and maintenance of datasets. Optical Coherence Tomography (OCT) is useful for the diagnosis and monitoring of retinal pathologies, making it valuable for AI applications. This review aims to identify and compare the landscape of publicly available optical coherence tomography databases for AI applications.&#13;
METHODS: We conducted a literature review on OCT and AI articles with publicly accessible datasets, using PubMed, Scopus, and Web of Science databases. The review retrieved 183 articles, and after full-text analysis, 50 articles were included. From the included articles were identified 8 publicly available OCT datasets, focusing on patient demographics and clinical details for thorough assessment and comparison.&#13;
RESULTS: The resulting datasets encompass 154,313 images collected from Spectralis, Cirrus HD, Topcon 3D, and Bioptigen devices. These datasets included normal exams, age-related macular degeneration, and diabetic maculopathy, among others. Comprehensive demographic information is available in one dataset and the USA is the most represented population.&#13;
DISCUSSION: Current publicly available OCT databases for AI applications exhibit limitations, stemming from their non-representative nature and the lack of comprehensive demographic information. Limited datasets hamper research and equitable AI development. To promote equitable AI algorithmic development in ophthalmology, there is a need for the creation and dissemination of more representative datasets.
</summary>
<dc:date>2024-04-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Market Design for Capacity Sharing in Networks</title>
<link href="https://hdl.handle.net/1721.1/164339" rel="alternate"/>
<author>
<name>Amin, Saurabh</name>
</author>
<author>
<name>Jaillet, Patrick</name>
</author>
<author>
<name>Pulyassary, Haripriya</name>
</author>
<author>
<name>Wu, Manxi</name>
</author>
<id>https://hdl.handle.net/1721.1/164339</id>
<updated>2026-04-14T03:29:54Z</updated>
<published>2025-11-21T00:00:00Z</published>
<summary type="text">Market Design for Capacity Sharing in Networks
Amin, Saurabh; Jaillet, Patrick; Pulyassary, Haripriya; Wu, Manxi
We study a market mechanism that sets edge prices to incentivize strategic agents to efficiently share limited network capacity. In this market, agents form coalitions, with each coalition sharing a unit capacity of a selected route and making payments to cover edge prices. Our focus is on the existence and computation of market equilibrium, where challenges arise from the interdependence between coalition formation among strategic agents with heterogeneous preferences and route selection that induces a network flow under integral capacity constraints. To address this interplay between coalition formation and network capacity utilization, we introduce a novel approach based on combinatorial auction theory and network flow theory. We establish sufficient conditions on the network topology and agents' preferences that guarantee both the existence and polynomial-time computation of a market equilibrium. Additionally, we identify a particular market equilibrium that maximizes utilities for all agents and is equivalent to the classical Vickrey-Clarke-Groves mechanism. Furthermore, we extend our results to multi-period settings and general networks, showing that when the sufficient conditions are not met, an equilibrium may still exist but requires more complex, path-based pricing mechanisms that set differentiated prices based on agents' preference parameters.
</summary>
<dc:date>2025-11-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Forage: Understanding RAG-based Sensemaking for Community Conversations</title>
<link href="https://hdl.handle.net/1721.1/164338" rel="alternate"/>
<author>
<name>Schroeder, Hope</name>
</author>
<author>
<name>Beeferman, Doug</name>
</author>
<author>
<name>Detwiller, Maya</name>
</author>
<author>
<name>Dimitrakopoulou, Dimitra</name>
</author>
<author>
<name>Roy, Deb</name>
</author>
<id>https://hdl.handle.net/1721.1/164338</id>
<updated>2026-04-14T03:19:50Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Forage: Understanding RAG-based Sensemaking for Community Conversations
Schroeder, Hope; Beeferman, Doug; Detwiller, Maya; Dimitrakopoulou, Dimitra; Roy, Deb
We introduce Forage, a RAG-based and LLM-augmented search engine, which we apply to the problem of sensemaking for community conversation data. We report on formative user studies introducing Forage to two distinct user groups: NPR journalists and municipal staff in the city of Durham, North Carolina. We taxonomize the query types users make with the tool, use cases that include synthesizing insights across conversations and finding content about a particular subject. We find that users tend to gravitate towards using the system for synthesis more than for pure search. We report on challenges and opportunities surfaced by performing sensemaking with an open-ended interface like Forage, such as the benefits of finding content quickly, but also the challenges users face interacting with a system in natural language. Insights from this formative study confirm the usefulness of Forage for sensemaking, but also make follow-up work, such as systematically evaluating system performance and developing appropriate design, urgent.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Generative artificial intelligence in supply chain and operations management: a capability-based framework for analysis and implementation</title>
<link href="https://hdl.handle.net/1721.1/164337" rel="alternate"/>
<author>
<name>Jackson, Ilya</name>
</author>
<author>
<name>Ivanov, Dmitry</name>
</author>
<author>
<name>Dolgui, Alexandre</name>
</author>
<author>
<name>Namdar, Jafar</name>
</author>
<id>https://hdl.handle.net/1721.1/164337</id>
<updated>2026-04-14T03:37:25Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">Generative artificial intelligence in supply chain and operations management: a capability-based framework for analysis and implementation
Jackson, Ilya; Ivanov, Dmitry; Dolgui, Alexandre; Namdar, Jafar
This research examines the transformative potential of artificial intelligence (AI) in general and Generative AI (GAI) in particular in supply chain and operations management (SCOM). Through the lens of the resource-based view and based on key AI capabilities such as learning, perception, prediction, interaction, adaptation, and reasoning, we explore how AI and GAI can impact 13 distinct SCOM decision-making areas. These areas include but are not limited to demand forecasting, inventory management, supply chain design, and risk management. With its outcomes, this study provides a comprehensive understanding of AI and GAI's functionality and applications in the SCOM context, offering a practical framework for both practitioners and researchers. The proposed framework systematically identifies where and how AI and GAI can be applied in SCOM, focussing on decision-making enhancement, process optimisation, investment prioritisation, and skills development. Managers can use it as a guidance to evaluate their operational processes and identify areas where AI and GAI can deliver improved efficiency, accuracy, resilience, and overall effectiveness. The research underscores that AI and GAI, with their multifaceted capabilities and applications, open a revolutionary potential and substantial implications for future SCOM practices, innovations, and research.
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Remote Direct Code Execution</title>
<link href="https://hdl.handle.net/1721.1/164336" rel="alternate"/>
<author>
<name>Huang, Yibo</name>
</author>
<author>
<name>Qiu, Yiming</name>
</author>
<author>
<name>Ding, Daqian</name>
</author>
<author>
<name>Kon, Patrick Tser Jern</name>
</author>
<author>
<name>Zhang, Yiwen</name>
</author>
<author>
<name>Mao, Yuzhou</name>
</author>
<author>
<name>Bhatnagar, Archit</name>
</author>
<author>
<name>Chowdhury, Mosharaf</name>
</author>
<author>
<name>Devadas, Srinivas</name>
</author>
<author>
<name>Xing, Jiarong</name>
</author>
<author>
<name>Chen, Ang</name>
</author>
<id>https://hdl.handle.net/1721.1/164336</id>
<updated>2026-04-14T03:29:56Z</updated>
<published>2025-11-17T00:00:00Z</published>
<summary type="text">Remote Direct Code Execution
Huang, Yibo; Qiu, Yiming; Ding, Daqian; Kon, Patrick Tser Jern; Zhang, Yiwen; Mao, Yuzhou; Bhatnagar, Archit; Chowdhury, Mosharaf; Devadas, Srinivas; Xing, Jiarong; Chen, Ang
We propose remote direct code execution (RDX), which elevates the power of RDMA from memory access to code execution. We target runtime extension frameworks such as Wasm filters, BPF programs, and UDF functions, where RDX enables an agentless architecture that unlocks capabilities such as fast extension injection, update consistency guarantees, and minimal resource contention. We outline the roadmap for RDX around a new CodeFlow abstraction, encompassing programming remote extensions, exposing management stubs, remotely validating and JIT compiling code, seamlessly linking code to local context, managing remote extension state, and synchronizing code to targets. The case studies and initial results demonstrate the feasibility of RDX and its potential to spark the next wave of RDMA innovations.
HotNets ’25, College Park, MD, USA
</summary>
<dc:date>2025-11-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>User Adoption of Intelligent Environments: A Review of Technology Adoption Models, Challenges, and Prospects</title>
<link href="https://hdl.handle.net/1721.1/164335" rel="alternate"/>
<author>
<name>FakhrHosseini, Shabnam</name>
</author>
<author>
<name>Chan, Kathryn</name>
</author>
<author>
<name>Lee, Chaiwoo</name>
</author>
<author>
<name>Jeon, Myounghoon</name>
</author>
<author>
<name>Son, Heesuk</name>
</author>
<author>
<name>Rudnik, John</name>
</author>
<author>
<name>Coughlin, Joseph</name>
</author>
<id>https://hdl.handle.net/1721.1/164335</id>
<updated>2026-04-14T03:37:24Z</updated>
<published>2024-02-16T00:00:00Z</published>
<summary type="text">User Adoption of Intelligent Environments: A Review of Technology Adoption Models, Challenges, and Prospects
FakhrHosseini, Shabnam; Chan, Kathryn; Lee, Chaiwoo; Jeon, Myounghoon; Son, Heesuk; Rudnik, John; Coughlin, Joseph
Recent technological advancements have enabled the development of smarter (more automated) and more intelligent (adaptable) environments. To understand what factors lead users to reject or adopt Intelligent Environments (IEs), we reviewed nine prominent technology adoption theories. We conducted a literature review to investigate the acceptance and adoption of different types of IEs. We found that perceived usefulness, ease of use, perceived control or self-efficacy, affect and enjoyment, and perceived risks are the common factors across the studies explaining the adoption of IEs. However, shortcomings in the design and methods of the reviewed studies present major concerns in the generalizability and application of existing theories to emerging IEs. We identify eight lacunae in the existing literature and propose a new conceptual model for explaining the adoption of IEs. Through this study, we contribute to the formulation of the theoretical background for the successful introduction of IEs and their integration into users’ everyday life.
</summary>
<dc:date>2024-02-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Safe and Secure Control of Connected and Automated Vehicles: An Event-Triggered Control Approach using Trust-Aware Robust Control Barrier Functions</title>
<link href="https://hdl.handle.net/1721.1/164334" rel="alternate"/>
<author>
<name>Ahmad, H M SABBIR</name>
</author>
<author>
<name>Sabouni, Ehsan</name>
</author>
<author>
<name>Xiao, Wei</name>
</author>
<author>
<name>Cassandras, Christos</name>
</author>
<author>
<name>Li, Wenchao</name>
</author>
<id>https://hdl.handle.net/1721.1/164334</id>
<updated>2026-04-14T03:29:57Z</updated>
<published>2025-11-18T00:00:00Z</published>
<summary type="text">Safe and Secure Control of Connected and Automated Vehicles: An Event-Triggered Control Approach using Trust-Aware Robust Control Barrier Functions
Ahmad, H M SABBIR; Sabouni, Ehsan; Xiao, Wei; Cassandras, Christos; Li, Wenchao
We address the security of a network of Connected and Automated Vehicles (CAVs) cooperating to safely navigate through a conflict area (e.g., traffic intersections, merging roadways, roundabouts). Previous studies have shown that such a network can be targeted by adversarial attacks causing traffic jams or safety violations resulting in collisions.   We focus on attacks targeting the V2X communication network used to share vehicle data and consider as well uncertainties due to noise in sensor measurements and communication channels. To combat these, motivated by recent work on the safe control of CAVs, we propose a trust-aware robust event-triggered decentralized control and coordination framework that can provably guarantee safety.   We maintain a trust metric for each vehicle in the network computed based on their behavior and used to balance the tradeoff between conservativeness (when deeming every vehicle as untrustworthy) while guaranteeing safety and performance.  It is important to highlight that our framework is invariant to the specific choice of the trust framework.   Based on this framework, we propose an attack detection and mitigation scheme which has twofold benefits: (i) the trust framework is immune to false positives, and (ii) it provably guarantees safety against false positive cases which may arise from a poor choice of trust framework. We use extensive simulations in SUMO and CARLA to validate the theoretical guarantees and demonstrate the efficacy of our proposed scheme to detect and mitigate adversarial attacks. The code for the simulated scenarios can be found in this \href{https://github.com/SabbirAhmad26/Trust_based_CBF}{\textit{\underline{link}}}.
</summary>
<dc:date>2025-11-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Three-dimensional, soft magnetic-cored solenoids via multi-material extrusion</title>
<link href="https://hdl.handle.net/1721.1/164333" rel="alternate"/>
<author>
<name>Cañada, Jorge</name>
</author>
<author>
<name>Kim, Hyeonseok</name>
</author>
<author>
<name>Velásquez-García, Luis Fernando</name>
</author>
<id>https://hdl.handle.net/1721.1/164333</id>
<updated>2026-04-14T03:37:23Z</updated>
<published>2024-02-20T00:00:00Z</published>
<summary type="text">Three-dimensional, soft magnetic-cored solenoids via multi-material extrusion
Cañada, Jorge; Kim, Hyeonseok; Velásquez-García, Luis Fernando
This study reports fully 3D-printed, three-dimensional, soft magnetic-cored solenoids that generate three times the largest magnetic fields previously reported from 3D-printed solenoids. The devices are fabricated on a customised, multi-material 3D printer that can extrude both filaments and pellets. Three different kinds of materials are employed to manufacture the reported soft magnetic-cored solenoids: pure PLA (dielectric portions), PLA doped with copper particles (electrically conductive structures), and nylon or PLA doped with metallic particles (soft magnetic cores). Via manufacturing optimisation, the reported devices are 33% smaller and can withstand about twice the current, generating three times more magnetic field. The 3D-printed solenoids generate Gauss-level magnetic fields while drawing tens-of-milliamps currents and can be readily used to implement fully 3D-printed induction sensors. The results of this work extend the state of the art in 3D-printed electronics, enabling the creation of more complex and capable solenoids for in-situ manufactured and in-space manufactured electromagnetic systems.
</summary>
<dc:date>2024-02-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Churns and Turns of HCI: Which CHI Papers Make the Most Impact in an Ever-growing Sea of HCI Publications</title>
<link href="https://hdl.handle.net/1721.1/164331" rel="alternate"/>
<author>
<name>Kaltenhauser, Annika</name>
</author>
<author>
<name>Sch?ning, Johannes</name>
</author>
<author>
<name>Churchill, Elizabeth</name>
</author>
<author>
<name>Ishii, Hiroshi</name>
</author>
<author>
<name>Mekler, Elisa</name>
</author>
<author>
<name>Shneiderman, Ben</name>
</author>
<id>https://hdl.handle.net/1721.1/164331</id>
<updated>2026-04-14T03:19:48Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">The Churns and Turns of HCI: Which CHI Papers Make the Most Impact in an Ever-growing Sea of HCI Publications
Kaltenhauser, Annika; Sch?ning, Johannes; Churchill, Elizabeth; Ishii, Hiroshi; Mekler, Elisa; Shneiderman, Ben
The ACM Conference on Human Factors in Computing Systems (CHI) is the premier venue for research in Human-Computer Interaction (HCI). 11,290 full papers have been published and collectively cited almost one million times. Highly cited papers undoubtedly represent influential work, affecting the creation of review standards and conference submission and acceptance practices within and beyond CHI. However, the factors contributing to high citation counts and what constitutes a highly cited CHI paper remain largely unclear. In this panel discussion, we will engage the CHI community in exploring the relationship between paper characteristics, citation numbers, and effective impact on HCI as a discipline, and on HCI as an influential endeavour in technology design and development. To ground this discussion, we present findings from a literature review of the 100 most cited CHI full papers, looking at past and present fields and subfields of influence. We will also share insights from HCI experts. Our goals are to shed light on the meaning of impactful work at CHI and in HCI more broadly, to reflect on key trends in HCI over the years, and to discuss themes that have driven pivotal shifts in HCI research. We will lead the conversation toward a deeper understanding of citation practices, the role of citations in focusing and driving HCI research, and the implications of citation when it comes to shaping what is considered impactful HCI.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Safeguards and Security for High-Burnup TRISO Pebble Bed Spent Fuel and Reactors</title>
<link href="https://hdl.handle.net/1721.1/164332" rel="alternate"/>
<author>
<name>Forsberg, Charles</name>
</author>
<author>
<name>Kadak, Andrew</name>
</author>
<id>https://hdl.handle.net/1721.1/164332</id>
<updated>2026-04-14T03:37:29Z</updated>
<published>2024-08-02T00:00:00Z</published>
<summary type="text">Safeguards and Security for High-Burnup TRISO Pebble Bed Spent Fuel and Reactors
Forsberg, Charles; Kadak, Andrew
Several high-temperature thermal neutron–spectrum pebble bed reactors are being commercialized. China has started up two helium-cooled pebble bed high-temperature reactors. In the United States, the X-Energy helium-cooled and the Kairos Power salt-cooled pebble bed high-temperature reactors will produce spent nuclear fuel (SNF) with burnups exceeding 150 000 MWd per tonne. The reactor fuel in each case consists of small spherical graphite pebbles (4 to 6 cm in diameter) containing thousands of small TRISO (microspheric tri-structural isotropic) fuel particles embedded in the fuel of zone these pebbles. The unique isotopic, chemical, and physical characteristics of this high-burnup SNF create a technical case to eliminate safeguards based on the low risk for use in nuclear weapons, while maintaining safeguards in terms of risk for use in radiological weapons. These safeguards could be reduced to the simple counting and monitoring of pebbles in storage. Alternatively, there is the option to create a special category with reduced requirements for this SNF in storage, transport, and disposal. No safeguards would be required for a repository with only this type of SNF. Reactor safeguards are required for fresh fuel, partly burnt fuel, and to identify unconventional pebbles with depleted uranium or other materials that might be used to create weapons-useable materials.
</summary>
<dc:date>2024-08-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Constrained Tabular Diffusion for Finance</title>
<link href="https://hdl.handle.net/1721.1/164330" rel="alternate"/>
<author>
<name>Cardei, Michael</name>
</author>
<author>
<name>Munoz, Jose</name>
</author>
<author>
<name>Barrera, Oscar</name>
</author>
<author>
<name>Chandrahas, Shreyas</name>
</author>
<author>
<name>Saha, Partha</name>
</author>
<id>https://hdl.handle.net/1721.1/164330</id>
<updated>2026-04-14T03:29:55Z</updated>
<published>2025-11-14T00:00:00Z</published>
<summary type="text">Constrained Tabular Diffusion for Finance
Cardei, Michael; Munoz, Jose; Barrera, Oscar; Chandrahas, Shreyas; Saha, Partha
Generative models in finance face the dual challenge of producing realistic data while satisfying strict regulatory and economic objectives, a requirement that standard tabular diffusion models cannot provide. To address this difficulty, we introduce Constrained Tabular Diffusion for Finance (CTDF), a novel integration of sampling-time feasibility operations with mixed-type tabular diffusion in financial applications. By incorporating a training-free feasibility operator into the reverse‑diffusion sampling loop, CTDF enforces hard constraints for applications such as simulation, legal compliance, and extrapolation. Extensive experiments on large-scale financial datasets demonstrate zero constraint violations and improvement in scarce data utility. CTDF establishes a robust method for generating trustworthy and compliant synthetic data, opening new avenues for rigorous generative modeling and analysis in the financial domain.
6th ACM International Conference on AI in Finance (ICAIF ’25), November 15–18, 2025,&#13;
Singapore, Singapore
</summary>
<dc:date>2025-11-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Bayesian sampling framework for constrained optimisation of build layouts in additive manufacturing</title>
<link href="https://hdl.handle.net/1721.1/164329" rel="alternate"/>
<author>
<name>Kim, Suh In</name>
</author>
<author>
<name>Gee, Kaitlyn</name>
</author>
<author>
<name>Hart, A John</name>
</author>
<id>https://hdl.handle.net/1721.1/164329</id>
<updated>2026-04-14T03:37:28Z</updated>
<published>2024-08-17T00:00:00Z</published>
<summary type="text">A Bayesian sampling framework for constrained optimisation of build layouts in additive manufacturing
Kim, Suh In; Gee, Kaitlyn; Hart, A John
In additive manufacturing processes such as laser powder bed fusion, the build orientation and packing of components affect the required support structures, the number of parts in each build, and the surface roughness of the printed parts, among other factors. Maximising the packing density while minimising the build height can increase effective machine utilisation and decrease per-part cost. Yet, the build layout optimisation problem is highly nonlinear and difficult to solve using human intuition, so a systematic algorithm approach is required. Here, we present and demonstrate a voxel-based analysis method with Bayesian optimisation for determining component build orientation in additive manufacturing. We introduce selected case studies incorporating exemplary process attributes of laser powder bed fusion, including the determination of orientation and packing configurations based on support removal and tool-accessibility constraints.
</summary>
<dc:date>2024-08-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>18.05 Introduction to Probability and Statistics, Spring 2014</title>
<link href="https://hdl.handle.net/1721.1/153490.2" rel="alternate"/>
<author>
<name>Orloff, Jeremy</name>
</author>
<author>
<name>Bloom, Jonathan</name>
</author>
<id>https://hdl.handle.net/1721.1/153490.2</id>
<updated>2025-12-16T19:16:26Z</updated>
<published>2014-06-01T00:00:00Z</published>
<summary type="text">18.05 Introduction to Probability and Statistics, Spring 2014
Orloff, Jeremy; Bloom, Jonathan
This course provides an elementary introduction to probability and statistics with applications. Topics include: basic combinatorics, random variables, probability distributions, Bayesian inference, hypothesis testing, confidence intervals, and linear regression. The Spring 2014 version of this subject employed the residential MITx system, which enables on-campus subjects to provide MIT students with learning and assessment tools such as online problem sets, lecture videos, reading questions, pre-lecture questions, problem set assistance, tutorial videos, exam review content, and even online exams.
</summary>
<dc:date>2014-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>RES.STR-001 Geographic Information System (GIS) Tutorial, January IAP 2016</title>
<link href="https://hdl.handle.net/1721.1/151195.2" rel="alternate"/>
<author>
<name>MIT GIS Services Group</name>
</author>
<id>https://hdl.handle.net/1721.1/151195.2</id>
<updated>2025-12-16T05:02:38Z</updated>
<published>2016-01-01T00:00:00Z</published>
<summary type="text">RES.STR-001 Geographic Information System (GIS) Tutorial, January IAP 2016
MIT GIS Services Group
The MIT GIS Services Group at the MIT Libraries hosts a number of tutorial workshops throughout the year. This resource gathers together some of those introductory workshop materials designed to accustom GIS novices to the various available software packages and introduce them to some of the many features included in GIS systems. Topics include an introduction to two GIS applications, spatial data analysis, and spatial statistics.
</summary>
<dc:date>2016-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>RES.18-001 Calculus Online Textbook, Spring 2005</title>
<link href="https://hdl.handle.net/1721.1/153487.2" rel="alternate"/>
<author>
<name>Strang, Gilbert</name>
</author>
<id>https://hdl.handle.net/1721.1/153487.2</id>
<updated>2025-12-16T05:03:40Z</updated>
<published>2005-06-01T00:00:00Z</published>
<summary type="text">RES.18-001 Calculus Online Textbook, Spring 2005
Strang, Gilbert
Published in 1991 by Wellesley-Cambridge Press, the book is a useful resource for educators and self-learners alike. It is well organized, covers single variable and multivariable calculus in depth, and is rich with applications.&amp;nbsp; In addition to the Textbook, there is also an online Instructor's Manual and a student Study Guide. Prof. Strang has also developed a related series of videos, Highlights of Calculus, on the basic ideas of calculus.The 2010 second edition of the Calculus textbook includes a new chapter on &amp;quot;Highlights of Calculus&amp;quot; that connects to the video series of the same name.&amp;nbsp; The new chapter has summaries and practice questions for all of the videos.&amp;nbsp; It also introduces The Exponential Function (e^x) as presented in Prof. Strang's video on this topic.
</summary>
<dc:date>2005-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>CMS.930 / 21G.034 Media, Education, and the Marketplace, Fall 2001</title>
<link href="https://hdl.handle.net/1721.1/150949.2" rel="alternate"/>
<author>
<name>Miyagawa, Shigeru</name>
</author>
<id>https://hdl.handle.net/1721.1/150949.2</id>
<updated>2025-12-16T03:37:19Z</updated>
<published>2001-12-01T00:00:00Z</published>
<summary type="text">CMS.930 / 21G.034 Media, Education, and the Marketplace, Fall 2001
Miyagawa, Shigeru
How can we harness the emerging forms of interactive media to enhance the learning process? Professor Miyagawa and prominent guest speakers will explore a broad range of issues on new media and learning - technical, social, and business. Concrete examples of use of media will be presented as case studies. One major theme, though not the only one, is that today's youth, influenced by video games and other emerging interactive media forms, are acquiring a fundamentally different attitude towards media. Media is, for them, not something to be consumed, but also to be created. This has broad consequences for how we design media, how the young are taught in schools, and how mass media markets will need to adjust.
</summary>
<dc:date>2001-12-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>21W.765J / 21L.489J / CMS.845J Interactive and Non-Linear Narrative: Theory and Practice, Spring 2006</title>
<link href="https://hdl.handle.net/1721.1/150854.2" rel="alternate"/>
<author>
<name>Coleman, Beth</name>
</author>
<id>https://hdl.handle.net/1721.1/150854.2</id>
<updated>2025-12-16T01:03:38Z</updated>
<published>2006-06-01T00:00:00Z</published>
<summary type="text">21W.765J / 21L.489J / CMS.845J Interactive and Non-Linear Narrative: Theory and Practice, Spring 2006
Coleman, Beth
This course covers techniques of creating narratives that take advantage of the flexibility of form offered by the computer. The course studies the structural properties of book-based narratives that experiment with digression, multiple points of view, disruptions of time and of storyline. The class analyzes the structure and evaluates the literary qualities of computer-based narratives including hypertexts, adventure games, and classic artificial intelligence programs like Eliza. With this base, students use authoring systems to model a variety of narrative techniques and to create their own fictions. Knowledge of programming is helpful but not necessary.
</summary>
<dc:date>2006-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>CMS.610 / CMS.922 Media Industries and Systems, Spring 2006</title>
<link href="https://hdl.handle.net/1721.1/151161.2" rel="alternate"/>
<author>
<name>Weaver, Christopher</name>
</author>
<id>https://hdl.handle.net/1721.1/151161.2</id>
<updated>2025-12-16T00:51:34Z</updated>
<published>2006-06-01T00:00:00Z</published>
<summary type="text">CMS.610 / CMS.922 Media Industries and Systems, Spring 2006
Weaver, Christopher
This course examines the interplay of art, science, and commerce shaping the production, marketing, distribution, and consumption of contemporary media. It combines perspectives on media industries and systems with an awareness of the creative process, the audience, and trends shaping content. There will be invited discussions with industry experts in various subject areas. Class projects will encourage students to think through the challenges of producing media in an industry context. CMS.610 is for undergraduate credit, whereas CMS.922 is for graduate credit. Though the requirements for graduates are more stringent, the course is intended for both undergraduate and graduate students.
</summary>
<dc:date>2006-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A rapid simple point-of-care assay for the detection of SARS-CoV-2 neutralizing antibodies</title>
<link href="https://hdl.handle.net/1721.1/164328" rel="alternate"/>
<author>
<name>Kongsuphol, Patthara</name>
</author>
<author>
<name>Jia, Huan</name>
</author>
<author>
<name>Cheng, Hoi Lok</name>
</author>
<author>
<name>Gu, Yue</name>
</author>
<author>
<name>Shunmuganathan, Bhuvaneshwari DO</name>
</author>
<author>
<name>Chen, Ming Wei</name>
</author>
<author>
<name>Lim, Sing Mei</name>
</author>
<author>
<name>Ng, Say Yong</name>
</author>
<author>
<name>Tambyah, Paul Ananth</name>
</author>
<author>
<name>Nasir, Haziq</name>
</author>
<author>
<name>Gao, Xiaohong</name>
</author>
<author>
<name>Tay, Dousabel</name>
</author>
<author>
<name>Kim, Seunghyeon</name>
</author>
<author>
<name>Gupta, Rashi</name>
</author>
<author>
<name>Qian, Xinlei</name>
</author>
<author>
<name>Kozma, Mary M</name>
</author>
<author>
<name>Purushotorman, Kiren</name>
</author>
<author>
<name>McBee, Megan E</name>
</author>
<author>
<name>MacAry, Paul A</name>
</author>
<author>
<name>Sikes, Hadley D</name>
</author>
<author>
<name>Preiser, Peter R</name>
</author>
<id>https://hdl.handle.net/1721.1/164328</id>
<updated>2026-04-14T03:32:28Z</updated>
<published>2021-11-11T00:00:00Z</published>
<summary type="text">A rapid simple point-of-care assay for the detection of SARS-CoV-2 neutralizing antibodies
Kongsuphol, Patthara; Jia, Huan; Cheng, Hoi Lok; Gu, Yue; Shunmuganathan, Bhuvaneshwari DO; Chen, Ming Wei; Lim, Sing Mei; Ng, Say Yong; Tambyah, Paul Ananth; Nasir, Haziq; Gao, Xiaohong; Tay, Dousabel; Kim, Seunghyeon; Gupta, Rashi; Qian, Xinlei; Kozma, Mary M; Purushotorman, Kiren; McBee, Megan E; MacAry, Paul A; Sikes, Hadley D; Preiser, Peter R
Background Neutralizing antibodies (NAbs) prevent pathogens from infecting host cells.&#13;
Detection of SARS-CoV-2 NAbs is critical to evaluate herd immunity and monitor vaccine&#13;
efficacy against SARS-CoV-2, the virus that causes COVID-19. All currently available NAb&#13;
tests are lab-based and time-intensive.&#13;
Method We develop a 10 min cellulose pull-down test to detect NAbs against SARS-CoV-2&#13;
from human plasma. The test evaluates the ability of antibodies to disrupt ACE2 receptor—&#13;
RBD complex formation. The simple, portable, and rapid testing process relies on two key&#13;
technologies: (i) the vertical-flow paper-based assay format and (ii) the rapid interaction of&#13;
cellulose binding domain to cellulose paper.&#13;
Results Here we show the construction of a cellulose-based vertical-flow test. The developed test gives above 80% sensitivity and specificity and up to 93% accuracy as compared&#13;
to two current lab-based methods using COVID-19 convalescent plasma.&#13;
Conclusions A rapid 10 min cellulose based test has been developed for detection of NAb&#13;
against SARS-CoV-2. The test demonstrates comparable performance to the lab-based tests&#13;
and can be used at Point-of-Care. Importantly, the approach used for this test can be easily&#13;
extended to test RBD variants or to evaluate NAbs against other pathogens.
</summary>
<dc:date>2021-11-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Developing a SARS-CoV-2 Antigen Test Using Engineered Affinity Proteins</title>
<link href="https://hdl.handle.net/1721.1/164327" rel="alternate"/>
<author>
<name>Kim, Seunghyeon</name>
</author>
<author>
<name>Yee, Emma</name>
</author>
<author>
<name>Miller, Eric A</name>
</author>
<author>
<name>Hao, Yining</name>
</author>
<author>
<name>Tay, Dousabel MY</name>
</author>
<author>
<name>Sung, Ki-Joo</name>
</author>
<author>
<name>Jia, Huan</name>
</author>
<author>
<name>Johnson, Joseph M</name>
</author>
<author>
<name>Saeed, Mohsan</name>
</author>
<author>
<name>Mace, Charles R</name>
</author>
<author>
<name>Yüksel Yurt, Deniz</name>
</author>
<author>
<name>Sikes, Hadley D</name>
</author>
<id>https://hdl.handle.net/1721.1/164327</id>
<updated>2026-04-14T03:32:26Z</updated>
<published>2021-08-11T00:00:00Z</published>
<summary type="text">Developing a SARS-CoV-2 Antigen Test Using Engineered Affinity Proteins
Kim, Seunghyeon; Yee, Emma; Miller, Eric A; Hao, Yining; Tay, Dousabel MY; Sung, Ki-Joo; Jia, Huan; Johnson, Joseph M; Saeed, Mohsan; Mace, Charles R; Yüksel Yurt, Deniz; Sikes, Hadley D
The ongoing COVID-19 pandemic has clearly established how vital rapid, widely accessible diagnostic tests are in controlling infectious diseases and how difficult and slow it is to scale existing technologies. Here, we demonstrate the use of the rapid affinity pair identification via directed selection (RAPIDS) method to discover multiple affinity pairs for SARS-CoV-2 nucleocapsid protein (N-protein), a biomarker of COVID-19, from in vitro libraries in 10 weeks. The pair with the highest biomarker sensitivity was then integrated into a 10 min, vertical-flow cellulose paper test. Notably, the as-identified affinity proteins were compatible with a roll-to-roll printing process for large-scale manufacturing of tests. The test achieved 40 and 80 pM limits of detection in 1× phosphate-buffered saline (mock swab) and saliva matrices spiked with cell-culture-generated SARS-CoV-2 viruses and is also capable of detection of N-protein from characterized clinical swab samples. Hence, this work paves the way toward the mass production of cellulose paper-based assays which can address the shortages faced due to dependence on nitrocellulose and current manufacturing techniques. Further, the results reported herein indicate the promise of RAPIDS and engineered binder proteins for the timely and flexible development of clinically relevant diagnostic tests in response to emerging infectious diseases.
</summary>
<dc:date>2021-08-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Archaeology of Self: Reflexivity in Data Activism to Address Systemic Injustices</title>
<link href="https://hdl.handle.net/1721.1/164326" rel="alternate"/>
<author>
<name>Walker, Raechel</name>
</author>
<author>
<name>Cruse, Brady</name>
</author>
<author>
<name>Cora, Aisha</name>
</author>
<author>
<name>Rogers, Kantwon</name>
</author>
<author>
<name>D'Ignazio, Catherine</name>
</author>
<author>
<name>Brion-Meisels, Gretchen</name>
</author>
<author>
<name>Breazeal, Cynthia</name>
</author>
<id>https://hdl.handle.net/1721.1/164326</id>
<updated>2026-04-14T03:30:01Z</updated>
<published>2025-11-04T00:00:00Z</published>
<summary type="text">Archaeology of Self: Reflexivity in Data Activism to Address Systemic Injustices
Walker, Raechel; Cruse, Brady; Cora, Aisha; Rogers, Kantwon; D'Ignazio, Catherine; Brion-Meisels, Gretchen; Breazeal, Cynthia
Traditional data science education often neglects the importance of identity and sociopolitical context—especially for African American students whose lived experiences and cultural insights are essential for building justice centered technologies. This paper presents findings from the Data Activism Program, which integrated Dr. Yolanda Sealey-Ruiz’s Archaeology of Self™ framework to foster critical self-reflection and racial identity development among African American high school and college students. Through technical training in data science, art-based learning, and partnerships with social justice organizations, students engaged in reflexive practices that positioned them as active agents in challenging systemic oppression. Interviews reveal that the Archaeology of Self™ deepened students’ reflexivity skills and strengthened their sound racial identity, enabling them to interrogate bias within themselves and the data science process. We argue that embedding frameworks such as the Archaeology of Self™ into algorithmic design offers a concrete, transferable method for operationalizing reflexivity in data science and AI. This study contributes to the AI and data science community by offering actionable strategies to center identity and power in AI development.
EAAMO ’25, Pittsburgh, PA, USA
</summary>
<dc:date>2025-11-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Advances in Financial AI: Innovations, Risk, and Responsibility in the Era of LLMs</title>
<link href="https://hdl.handle.net/1721.1/164325" rel="alternate"/>
<author>
<name>Lee, Yongjae</name>
</author>
<author>
<name>Mehrasa, Nazanin</name>
</author>
<author>
<name>Choi, Chanyeol</name>
</author>
<author>
<name>Chen, Chung-Chi</name>
</author>
<author>
<name>Mehta, Dhagash</name>
</author>
<author>
<name>Zohren, Stefan</name>
</author>
<author>
<name>Kim, Yoon</name>
</author>
<author>
<name>Lee, Chulheum</name>
</author>
<author>
<name>Lee, Yeonhee</name>
</author>
<author>
<name>Oh, Eunsook</name>
</author>
<id>https://hdl.handle.net/1721.1/164325</id>
<updated>2026-04-14T03:29:54Z</updated>
<published>2025-11-10T00:00:00Z</published>
<summary type="text">Advances in Financial AI: Innovations, Risk, and Responsibility in the Era of LLMs
Lee, Yongjae; Mehrasa, Nazanin; Choi, Chanyeol; Chen, Chung-Chi; Mehta, Dhagash; Zohren, Stefan; Kim, Yoon; Lee, Chulheum; Lee, Yeonhee; Oh, Eunsook
The finance sector is seeing a rapid increase in the application of machine learning and AI, with Large Language Models (LLMs), ESG (Environmental, Social, and Governance) investing, and AI Safety significantly reshaping the field. This workshop focuses on how these advancements intersect with core financial AI applications. We will foster interdisciplinary discussion on applying LLMs to finance, addressing challenges in multilingual and non-English markets like Korea. The event will also highlight the integration of ESG signals into algorithmic decision-making and explore AI Safety, emphasizing reliability, fairness, and explainability for AI systems in regulated financial environments. By bringing together experts from academia, industry, and regulatory bodies, the workshop aims to stimulate discussions on practical issues, ethical dilemmas, and cutting-edge research shaping financial AI's future. We welcome submissions that combine technical rigor with societal relevance in AI-driven financial decisions.
CIKM ’25, Seoul, Republic of Korea
</summary>
<dc:date>2025-11-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design and Fabrication of Hybrid Functional Identities for Mechanical Elements</title>
<link href="https://hdl.handle.net/1721.1/164324" rel="alternate"/>
<author>
<name>AlAlawi, Marwa</name>
</author>
<id>https://hdl.handle.net/1721.1/164324</id>
<updated>2026-04-14T03:19:41Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Design and Fabrication of Hybrid Functional Identities for Mechanical Elements
AlAlawi, Marwa
My PhD research explores the simultaneous integration of mechanical and electrical functionalities in mechanical components such as gears, linkages, and springs, which I define as "hybrid functional identities." The focus is on transforming these components into non-intrusive sensors and active elements that maintain structural integrity while providing electrical capabilities like sensing, energy harvesting, and communication. I establish a framework for hybrid functional identities by examining common mechanical elements and their associated motions—rotational, linear, and reciprocal—along with force-based interactions like stretching, compression, and torsion. This analysis identifies essential electrical functionalities that complement these mechanical behaviors. Building on this foundation, I investigate modular mechanical building blocks that support diverse mechanical and electrical interaction primitives using a unified geometric structure. Ultimately, I aim to create an interconnected system where hybrid mechanical-electrical components function autonomously and communicate through an embedded wireless network.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Connecting through Comics: Design and Evaluation of Cube, an Arts-Based Digital Platform for Trauma-Impacted Youth</title>
<link href="https://hdl.handle.net/1721.1/164323" rel="alternate"/>
<author>
<name>Kumar, Ila</name>
</author>
<author>
<name>Shen, Jocelyn</name>
</author>
<author>
<name>Ferguson, Craig</name>
</author>
<author>
<name>Picard, Rosalind</name>
</author>
<id>https://hdl.handle.net/1721.1/164323</id>
<updated>2026-04-14T03:19:40Z</updated>
<published>2025-05-02T00:00:00Z</published>
<summary type="text">Connecting through Comics: Design and Evaluation of Cube, an Arts-Based Digital Platform for Trauma-Impacted Youth
Kumar, Ila; Shen, Jocelyn; Ferguson, Craig; Picard, Rosalind
This paper explores the design, development and evaluation of a digital platform that aims to assist young people who have experienced trauma in understanding and expressing their emotions and fostering social connections. Integrating principles from expressive arts and narrative-based therapies, we collaborate with lived experts to iteratively design a novel, user-centered digital tool for young people to create and share comics that represent their experiences. Specifically, we conduct a series of nine workshops with N=54 trauma-impacted youth and young adults to test and refine our tool, beginning with three workshops using low-fidelity prototypes, followed by six workshops with Cube, a web version of the tool. A qualitative analysis of workshop feedback and empathic relations analysis of artifacts provides valuable insights into the usability and potential impact of the tool, as well as the specific needs of young people who have experienced trauma. Our findings suggest that the integration of expressive and narrative therapy principles into Cube can offer a unique avenue for trauma-impacted young people to process their experiences, more easily communicate their emotions, and connect with supportive communities. We end by presenting implications for the design of social technologies that aim to support the emotional well-being and social integration of youth and young adults who have faced trauma.
</summary>
<dc:date>2025-05-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Structure of Cross-National Collaboration in Open-Source Software Development</title>
<link href="https://hdl.handle.net/1721.1/164322" rel="alternate"/>
<author>
<name>Xu, Henry</name>
</author>
<author>
<name>Yu, Katy</name>
</author>
<author>
<name>He, Hao</name>
</author>
<author>
<name>Fang, Hongbo</name>
</author>
<author>
<name>Vasilescu, Bogdan</name>
</author>
<author>
<name>Park, Patrick</name>
</author>
<id>https://hdl.handle.net/1721.1/164322</id>
<updated>2026-04-14T03:30:00Z</updated>
<published>2025-11-10T00:00:00Z</published>
<summary type="text">The Structure of Cross-National Collaboration in Open-Source Software Development
Xu, Henry; Yu, Katy; He, Hao; Fang, Hongbo; Vasilescu, Bogdan; Park, Patrick
Open-source software (OSS) development platforms, such as GitHub, expand the potential for cross-national collaboration among developers by lowering the geographic, temporal, and coordination barriers that limited software innovation in the past. However, research has shown that the technological affordances that facilitate cross-national collaboration do not uniformly benefit all countries. Using the GitHub Innovation Graph dataset, which aggregates the complete cross-country collaborations among the entire population of GitHub developers, we present quantitative evidence of deep-seated religious and cultural affinities, shared colonial histories, and geopolitical factors structuring the collaborations between non-U.S. country pairs that become visible when the overarching dominance of the U.S. is removed from the data. This study highlights the opportunities to develop decentralizing strategies to facilitate new collaborations between developers in non-U.S. countries, thereby fostering the development of novel, innovative solutions. More generally, this study also underscores the importance of contextualizing user behavior and knowledge management in information systems with long-term, macro-social conditions in which these systems are inextricably embedded.
CIKM ’25, Seoul, Republic of Korea
</summary>
<dc:date>2025-11-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Partition–diffusion–reaction bounds for thin-film membrane formation kinetics</title>
<link href="https://hdl.handle.net/1721.1/164321" rel="alternate"/>
<author>
<name>Deshmukh, Akshay</name>
</author>
<author>
<name>Elimelech, Menachem</name>
</author>
<author>
<name>Lienhard, John H.</name>
</author>
<id>https://hdl.handle.net/1721.1/164321</id>
<updated>2026-01-05T17:12:17Z</updated>
<published>2025-11-15T00:00:00Z</published>
<summary type="text">Partition–diffusion–reaction bounds for thin-film membrane formation kinetics
Deshmukh, Akshay; Elimelech, Menachem; Lienhard, John H.
New membrane chemistries and structures have rapidly developed over the last ten&#13;
years, driven by applications ranging from critical metals separations and carbon capture to highly chlorine-resistant reverse-osmosis membranes. The thin selective layer&#13;
at the heart of reverse osmosis and nanofiltration membranes is typically fabricated using interfacial synthesis, with multifunctional aqueous-phase monomers and organicphase monomers. Here, we develop a physics-based model of partition, diffusion, and&#13;
reaction dynamics during the early stages of interfacial synthesis. These processes&#13;
critically impact membrane structure and performance. By solving the resulting partial&#13;
differential equations numerically and with analytical approximations, we demonstrate&#13;
that the planar reaction rate is initially limited by the partitioning and diffusion of the&#13;
aqueous-phase reactant into the organic phase. Later, finite reactant availability and&#13;
aqueous-phase diffusion become limiting. Through a combination of nondimensionalization, parameter mapping, and property prediction, we develop a framework that&#13;
spans a wide parameter space in reactant chemistry, solvent and support layer choice,&#13;
and initial reactant concentrations. We demonstrate that the planar reaction rate and&#13;
dynamics are strongly affected by the partition coefficient of the aqueous reactant,&#13;
which varies rapidly with changes in reactant and solvent chemistry. The influence&#13;
of diffusion variations is more limited. This tractable, physics-based model enables&#13;
the rapid quantification of monomer and solvent impact on interfacial synthesis, which&#13;
is essential for the rational development of new high-performance thin-film composite&#13;
membranes.
</summary>
<dc:date>2025-11-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Finger stick blood test to assess postvaccination SARS-CoV-2 neutralizing antibody response against variants</title>
<link href="https://hdl.handle.net/1721.1/164320" rel="alternate"/>
<author>
<name>Lim, Sing Mei</name>
</author>
<author>
<name>Cheng, Hoi Lok</name>
</author>
<author>
<name>Jia, Huan</name>
</author>
<author>
<name>Kongsuphol, Patthara</name>
</author>
<author>
<name>D/O Shunmuganathan, Bhuvaneshwari</name>
</author>
<author>
<name>Chen, Ming Wei</name>
</author>
<author>
<name>Ng, Say Yong</name>
</author>
<author>
<name>Gao, Xiaohong</name>
</author>
<author>
<name>Turaga, Shuvan Prashant</name>
</author>
<author>
<name>Heussler, Sascha P</name>
</author>
<author>
<name>Somani, Jyoti</name>
</author>
<author>
<name>Sengupta, Sharmila</name>
</author>
<author>
<name>Tay, Dousabel MY</name>
</author>
<author>
<name>McBee, Megan E</name>
</author>
<author>
<name>Young, Barnaby E</name>
</author>
<author>
<name>MacAry, Paul A</name>
</author>
<author>
<name>Sikes, Hadley D</name>
</author>
<author>
<name>Preiser, Peter R</name>
</author>
<id>https://hdl.handle.net/1721.1/164320</id>
<updated>2025-12-13T03:10:37Z</updated>
<published>2022-01-22T00:00:00Z</published>
<summary type="text">Finger stick blood test to assess postvaccination SARS-CoV-2 neutralizing antibody response against variants
Lim, Sing Mei; Cheng, Hoi Lok; Jia, Huan; Kongsuphol, Patthara; D/O Shunmuganathan, Bhuvaneshwari; Chen, Ming Wei; Ng, Say Yong; Gao, Xiaohong; Turaga, Shuvan Prashant; Heussler, Sascha P; Somani, Jyoti; Sengupta, Sharmila; Tay, Dousabel MY; McBee, Megan E; Young, Barnaby E; MacAry, Paul A; Sikes, Hadley D; Preiser, Peter R
There is clinical need for a quantifiable point-of-care (PoC) SARS-CoV-2 neutralizing antibody (nAb) test that is adaptable with the pandemic's changing landscape. Here, we present a rapid and semi-quantitative nAb test that uses finger stick or venous blood to assess the nAb response of vaccinated population against wild-type (WT), alpha, beta, gamma, and delta variant RBDs. It captures a clinically relevant range of nAb levels, and effectively differentiates prevaccination, post first dose, and post second dose vaccination samples within 10 min. The data observed against alpha, beta, gamma, and delta variants agrees with published results evaluated in established serology tests. Finally, our test revealed a substantial reduction in nAb level for beta, gamma, and delta variants between early BNT162b2 vaccination group (within 3 months) and later vaccination group (post 3 months). This test is highly suited for PoC settings and provides an insightful nAb response in a postvaccinated population.
</summary>
<dc:date>2022-01-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rapid Evaluation of Vaccine Booster Effectiveness against SARS-CoV-2 Variants</title>
<link href="https://hdl.handle.net/1721.1/164319" rel="alternate"/>
<author>
<name>Cheng, Hoi Lok</name>
</author>
<author>
<name>Lim, Sing Mei</name>
</author>
<author>
<name>Jia, Huan</name>
</author>
<author>
<name>Chen, Ming Wei</name>
</author>
<author>
<name>Ng, Say Yong</name>
</author>
<author>
<name>Gao, Xiaohong</name>
</author>
<author>
<name>Somani, Jyoti</name>
</author>
<author>
<name>Sengupta, Sharmila</name>
</author>
<author>
<name>Tay, Dousabel MY</name>
</author>
<author>
<name>Chua, Patrina WL</name>
</author>
<author>
<name>R., Abirami</name>
</author>
<author>
<name>Ling, Sharon YH</name>
</author>
<author>
<name>McBee, Megan E</name>
</author>
<author>
<name>Young, Barnaby E</name>
</author>
<author>
<name>Sikes, Hadley D</name>
</author>
<author>
<name>Preiser, Peter R</name>
</author>
<id>https://hdl.handle.net/1721.1/164319</id>
<updated>2025-12-13T03:10:36Z</updated>
<published>2022-09-07T00:00:00Z</published>
<summary type="text">Rapid Evaluation of Vaccine Booster Effectiveness against SARS-CoV-2 Variants
Cheng, Hoi Lok; Lim, Sing Mei; Jia, Huan; Chen, Ming Wei; Ng, Say Yong; Gao, Xiaohong; Somani, Jyoti; Sengupta, Sharmila; Tay, Dousabel MY; Chua, Patrina WL; R., Abirami; Ling, Sharon YH; McBee, Megan E; Young, Barnaby E; Sikes, Hadley D; Preiser, Peter R
As the COVID-19 pandemic continues, countries around the world are switching toward vaccinations and boosters to combat the pandemic. However, waning immunity against SARS-CoV-2 wild-type (WT) and variants have been widely reported. Booster vaccinations have shown to be able to increase immunological protection against new variants; however, the protection observed appears to decrease quickly over time suggesting a second booster shot may be appropriate. Moreover, heterogeneity and waning of the immune response at the individual level was observed suggesting a more personalized vaccination approach should be considered. To evaluate such a personalized strategy, it is important to have the ability to rapidly evaluate the level of neutralizing antibody (nAbs) response against variants at the individual level and ideally at a point of care setting. Here, we applied the recently developed cellulose pulled-down virus neutralization test (cpVNT) to rapidly assess individual nAb levels to WT and variants of concerns in response to booster vaccination. Our findings confirmed significant heterogeneity of nAb responses against a panel of SARS-CoV-2 variants, and indicated a strong increase in nAb response against variants of concern (VOCs) upon booster vaccination. For instance, the nAb response against current predominant omicron variant was observed with medians of 88.1% (n = 6, 95% CI = 73.2% to 96.2%) within 1-month postbooster and 70.7% (n = 22, 95% CI = 66.4% to 81.8%) 3 months postbooster. Our data show a point of care (POC) test focusing on nAb response levels against VOCs can guide decisions on the potential need for booster vaccinations at individual level. Importantly, it also suggests the current booster vaccines only give a transient protective response against some VOC and new more targeted formulations of a booster vaccine against specific VOC may need to be developed in the future.&#13;
IMPORTANCE Vaccination against SARS-CoV-2 induces protection through production of neutralization antibodies (nAb). The level of nAb is a major indicator of immunity against SARS-CoV-2 infection. We developed a rapid point-of-care test that can monitor the nAb level from a drop of finger stick blood. Here, we have implemented the test to monitor individual nAb level against wild-type and variants of SARS-CoV-2 at various time points of vaccination, including post-second-dose vaccination and postbooster vaccination. Huge diversity of nAb levels were observed among individuals as well as increment in nAb levels especially against Omicron variant after booster vaccination. This study evaluated the performance of this point-of-care test for personalized nAb response tracking. It verifies the potential of using a rapid nAb test to guide future vaccination regimens at both the individual and population level.
</summary>
<dc:date>2022-09-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tumor-localized catalases can fail to alter tumor growth and transcriptional profiles in subcutaneous syngeneic mouse tumor models</title>
<link href="https://hdl.handle.net/1721.1/164318" rel="alternate"/>
<author>
<name>Sheen, Allison</name>
</author>
<author>
<name>Agarwal, Yash</name>
</author>
<author>
<name>Cheah, Keith M</name>
</author>
<author>
<name>Cowles, Sarah C</name>
</author>
<author>
<name>Stinson, Jordan A</name>
</author>
<author>
<name>Palmeri, Joseph R</name>
</author>
<author>
<name>Sikes, Hadley D</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<id>https://hdl.handle.net/1721.1/164318</id>
<updated>2025-12-13T03:10:51Z</updated>
<published>2023-08-01T00:00:00Z</published>
<summary type="text">Tumor-localized catalases can fail to alter tumor growth and transcriptional profiles in subcutaneous syngeneic mouse tumor models
Sheen, Allison; Agarwal, Yash; Cheah, Keith M; Cowles, Sarah C; Stinson, Jordan A; Palmeri, Joseph R; Sikes, Hadley D; Wittrup, K Dane
Catalase is an antioxidant enzyme that catalyzes the rapid conversion of hydrogen peroxide to water and oxygen. Use of catalase as a cancer therapeutic has been proposed to reduce oxidative stress and hypoxia in the tumor microenvironment, both activities which are hypothesized to reduce tumor growth. Furthermore, exposing murine tumors to exogenous catalase was previously reported to have therapeutic benefit. We studied the therapeutic effect of tumor-localized catalases with the aim to further elucidate the mechanism of action. To do this, we engineered two approaches to maximize intratumoral catalase exposure: 1) an injected extracellular catalase with enhanced tumor retention, and 2) tumor cell lines that over-express intracellular catalase. Both approaches were characterized for functionality and tested for therapeutic efficacy and mechanism in 4T1 and CT26 murine syngeneic tumor models. The injected catalase was confirmed to have enzyme activity &gt;30,000 U/mg and was retained at the injection site for more than one week in vivo. The engineered cell lines exhibited increased catalase activity and antioxidant capacity, with catalase over-expression that was maintained for at least one week after gene expression was induced in vivo. We did not observe a significant difference in tumor growth or survival between catalase-treated and untreated mice when either approach was used. Finally, bulk RNA sequencing of tumors was performed, comparing the gene expression of catalase-treated and untreated tumors. Gene expression analysis revealed very few differentially expressed genes as a result of exposure to catalase and notably, we did not observe changes consistent with an altered state of hypoxia or oxidative stress. In conclusion, we observe that sustained intratumoral catalase neither has therapeutic benefit nor triggers significant differential expression of genes associated with the anticipated therapeutic mechanism in the subcutaneous syngeneic tumor models used. Given the lack of effect observed, we propose that further development of catalase as a cancer therapeutic should take these findings into consideration.
</summary>
<dc:date>2023-08-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optical Detection of Interleukin-6 Using Liquid Janus Emulsions Using Hyperthermophilic Affinity Proteins</title>
<link href="https://hdl.handle.net/1721.1/164317" rel="alternate"/>
<author>
<name>Chen, Michelle</name>
</author>
<author>
<name>Corless, Elliot I</name>
</author>
<author>
<name>Engelward, Bevin P</name>
</author>
<author>
<name>Swager, Timothy M</name>
</author>
<author>
<name>Sikes, Hadley D.</name>
</author>
<id>https://hdl.handle.net/1721.1/164317</id>
<updated>2025-12-13T03:10:31Z</updated>
<published>2024-08-22T00:00:00Z</published>
<summary type="text">Optical Detection of Interleukin-6 Using Liquid Janus Emulsions Using Hyperthermophilic Affinity Proteins
Chen, Michelle; Corless, Elliot I; Engelward, Bevin P; Swager, Timothy M; Sikes, Hadley D.
When equal volumes of two immiscible liquids are mixed (e.g., a hydrocarbon and a fluorocarbon), Janus droplets can form in an aqueous solution. In a gravity-aligned Janus droplet, the boundary between the two phases is flat and thus optically transparent when viewed from above. When tipped due to interactions with an analyte (i.e., agglutination), the resulting change in refraction and reflection yields an optical signal that can be detected and quantified. This study reports the detection and quantitation of interleukin-6 (IL-6) using emulsions functionalized at the hydrocarbon:aqueous interface with engineered proteins that bind IL-6 at high affinity and specificity. Hyperthermophilic affinity proteins (rcSso7d) are derived from thermophiles, giving them excellent thermal stability. Two rcSso7d affinity protein variants were synthesized with a noncanonical azide-functionalized amino acid to enable click chemistry to novel polymeric anchors embedded in the hydrocarbon phase. The two binding proteins recognize different epitopes, enabling the detection of both monomeric and dimeric IL-6 via agglutination. It is noteworthy that the rsSso7d protein variants, in addition to having superior thermal stability and facile recombinant synthesis in &lt;i&gt;E. coli&lt;/i&gt;, show superior performance when compared to commercial antibodies for IL-6.
</summary>
<dc:date>2024-08-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Point-of-need diagnostics in a post-Covid world: an opportunity for paper-based microfluidics to serve during syndemics</title>
<link href="https://hdl.handle.net/1721.1/164316" rel="alternate"/>
<author>
<name>Tsaloglou, Maria-Nefeli</name>
</author>
<author>
<name>Christodouleas, Dionysios C</name>
</author>
<author>
<name>Milette, Jonathan</name>
</author>
<author>
<name>Milkey, Kendall</name>
</author>
<author>
<name>Romine, Isabelle C</name>
</author>
<author>
<name>Im, Judy</name>
</author>
<author>
<name>Lathwal, Shefali</name>
</author>
<author>
<name>Selvam, Duraipandian Thava</name>
</author>
<author>
<name>Sikes, Hadley D</name>
</author>
<author>
<name>Whitesides, George M</name>
</author>
<id>https://hdl.handle.net/1721.1/164316</id>
<updated>2025-12-13T03:10:44Z</updated>
<published>2025-01-01T00:00:00Z</published>
<summary type="text">Point-of-need diagnostics in a post-Covid world: an opportunity for paper-based microfluidics to serve during syndemics
Tsaloglou, Maria-Nefeli; Christodouleas, Dionysios C; Milette, Jonathan; Milkey, Kendall; Romine, Isabelle C; Im, Judy; Lathwal, Shefali; Selvam, Duraipandian Thava; Sikes, Hadley D; Whitesides, George M
Zoonotic outbreaks present with unpredictable threats to human health, food production, biodiversity, national security and disrupt the global economy. The COVID-19 pandemic—caused by zoonotic coronavirus, SARS-CoV2— is the most recent upsurge of an increasing trend in outbreaks for the past 100 years. This year, emergence of avian influenza (H5N1) is a stark reminder of the need for national and international pandemic preparedness. Tools for threat reduction include consistent practices in reporting pandemics, and widespread availability of accurate detection technologies. Wars and extreme climate events redouble the need for fast, adaptable and affordable diagnostics at the point of need. During the recent pandemic, rapid home tests for SARS-CoV-2 proved to be a viable functional model that leverages simplicity. In this perspective, we introduce the concept of syndemnicity in the context of infectious diseases and point-of-need healthcare diagnostics. We also provide a brief state-of-the-art for paper-based microfluidics. We illustrate our arguments with a case study for detecting brucellosis in cows. Finally, we conclude with lessons learned, challenges and opportunities for paper-based microfluidics to serve point-of-need healthcare diagnostics during syndemics.
</summary>
<dc:date>2025-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Faster search for tensor decomposition over finite fields</title>
<link href="https://hdl.handle.net/1721.1/164315" rel="alternate"/>
<author>
<name>Yang, Jason</name>
</author>
<id>https://hdl.handle.net/1721.1/164315</id>
<updated>2025-12-13T03:10:04Z</updated>
<published>2025-11-10T00:00:00Z</published>
<summary type="text">Faster search for tensor decomposition over finite fields
Yang, Jason
We present an &#119874;&#13;
∗&#13;
(|F|&#13;
min{&#119877;, Í&#13;
&#119889;≥2 &#119899;&#119889; }+(&#119877;−&#119899;0 ) (Í&#13;
&#119889;≠0 &#119899;&#119889; )&#13;
)-time algorithm for determining whether the rank of a concise tensor &#119879; ∈&#13;
F&#13;
&#119899;0×···×&#119899;&#119863;−1&#13;
is ≤ &#119877;, assuming &#119899;0 ≥ · · · ≥ &#119899;&#119863;−1 and &#119877; ≥ &#119899;0.&#13;
For 3-dimensional tensors, we have a second algorithm running&#13;
in &#119874;&#13;
∗&#13;
(|F|&#13;
&#119899;0+&#119899;2+(&#119877;−&#119899;0+1−&#119903;∗ ) (&#119899;1+&#119899;2 )+&#119903;&#13;
2&#13;
∗ ) time, where &#119903;∗ :=&#13;
j&#13;
&#119877;&#13;
&#119899;0&#13;
k&#13;
+ 1.&#13;
Both algorithms use polynomial space and improve on our previous&#13;
work, which achieved running time &#119874;&#13;
∗&#13;
(|F|&#13;
&#119899;0+(&#119877;−&#119899;0 ) (Í&#13;
&#119889; &#119899;&#119889; )&#13;
).
ISSAC ’25, Guanajuato, Mexico
</summary>
<dc:date>2025-11-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Human-AI Interaction for Augmented Reasoning: Improving Human Reflective and Critical Thinking with Artificial Intelligence</title>
<link href="https://hdl.handle.net/1721.1/164314" rel="alternate"/>
<author>
<name>Danry, Valdemar</name>
</author>
<author>
<name>Pataranutaporn, Pat</name>
</author>
<author>
<name>Cui, Christopher</name>
</author>
<author>
<name>Hung, Jui-Tse</name>
</author>
<author>
<name>Blanchard, Lancelot</name>
</author>
<author>
<name>Bu?inca, Zana</name>
</author>
<author>
<name>Tan, Chenhao</name>
</author>
<author>
<name>Starner, Thad</name>
</author>
<author>
<name>Maes, Pattie</name>
</author>
<id>https://hdl.handle.net/1721.1/164314</id>
<updated>2025-12-13T03:09:46Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Human-AI Interaction for Augmented Reasoning: Improving Human Reflective and Critical Thinking with Artificial Intelligence
Danry, Valdemar; Pataranutaporn, Pat; Cui, Christopher; Hung, Jui-Tse; Blanchard, Lancelot; Bu?inca, Zana; Tan, Chenhao; Starner, Thad; Maes, Pattie
AI-Augmented Reasoning systems are cognitive assistants that support human reasoning by providing AI-based feedback that can help users improve their critical reasoning skills. Made possible with new techniques like argumentation mining, fact-checking, crowdsourcing, attention nudging, and large language models, AI augmented reasoning systems can provide real-time feedback on logical reasoning, help users identify and avoid flawed arguments and misinformation, suggest counter-arguments, provide evidence-based explanations, and foster deeper reflection. The goal of this workshop is to bring together researchers from AI, HCI, cognitive and social science to discuss recent advances in AI-augmented reasoning, to identify open problems in this area, and to cultivate an emerging community on this important topic.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Speech to Reality: On-Demand Production using Natural Language, 3D Generative AI, and Discrete Robotic Assembly</title>
<link href="https://hdl.handle.net/1721.1/164313" rel="alternate"/>
<author>
<name>Kyaw, Alexander Htet</name>
</author>
<author>
<name>Smith, Miana</name>
</author>
<author>
<name>Jeon, Se Hwan</name>
</author>
<author>
<name>Gershenfeld, Neil</name>
</author>
<id>https://hdl.handle.net/1721.1/164313</id>
<updated>2025-12-13T03:10:08Z</updated>
<published>2025-11-19T00:00:00Z</published>
<summary type="text">Speech to Reality: On-Demand Production using Natural Language, 3D Generative AI, and Discrete Robotic Assembly
Kyaw, Alexander Htet; Smith, Miana; Jeon, Se Hwan; Gershenfeld, Neil
We present a system that transforms speech into physical objects using 3D generative AI and discrete robotic assembly. By leveraging natural language, the system makes design and manufacturing more accessible to people without expertise in 3D modeling or robotic programming. While generative AI models can produce a wide range of 3D meshes, AI-generated meshes are not directly suitable for robotic assembly or account for fabrication constraints. To address this, we contribute a workflow that integrates natural language, 3D generative AI, geometric processing, and discrete robotic assembly. The system discretizes the AI-generated geometry and modifies it to meet fabrication constraints such as component count, overhangs, and connectivity to ensure feasible physical assembly. The results are demonstrated through the assembly of various objects, ranging from chairs to shelves, which are prompted via speech and realized within 5 minutes using a robotic arm.
SCF ’25, Cambridge, MA, USA
</summary>
<dc:date>2025-11-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>MechStyle: Augmenting Generative AI with Mechanical Simulation to Create Stylized and Structurally Viable 3D Models</title>
<link href="https://hdl.handle.net/1721.1/164312" rel="alternate"/>
<author>
<name>Faruqi, Faraz</name>
</author>
<author>
<name>Abdel-Rahman, Amira</name>
</author>
<author>
<name>Tejedor, Leandra</name>
</author>
<author>
<name>Nisser, Martin</name>
</author>
<author>
<name>Li, Jiaji</name>
</author>
<author>
<name>Phadnis, Vrushank</name>
</author>
<author>
<name>Jampani, Varun</name>
</author>
<author>
<name>Gershenfeld, Neil</name>
</author>
<author>
<name>Hofmann, Megan</name>
</author>
<author>
<name>Mueller, Stefanie</name>
</author>
<id>https://hdl.handle.net/1721.1/164312</id>
<updated>2025-12-13T03:10:14Z</updated>
<published>2025-11-19T00:00:00Z</published>
<summary type="text">MechStyle: Augmenting Generative AI with Mechanical Simulation to Create Stylized and Structurally Viable 3D Models
Faruqi, Faraz; Abdel-Rahman, Amira; Tejedor, Leandra; Nisser, Martin; Li, Jiaji; Phadnis, Vrushank; Jampani, Varun; Gershenfeld, Neil; Hofmann, Megan; Mueller, Stefanie
Recent developments in Generative AI enable creators to stylize 3D models based on text prompts. These methods change the 3D model geometry, which can compromise the model’s structural integrity once fabricated. We present MechStyle, a system that enables creators to stylize 3D printable models while preserving their structural integrity. MechStyle accomplishes this by augmenting the Generative AI-based stylization process with feedback from a Finite Element Analysis (FEA) simulation. As the stylization process modifies the geometry to approximate the desired style, feedback from the FEA simulation reduces modifications to regions with increased stress. We evaluate the effectiveness of FEA simulation feedback in the augmented stylization process by comparing three stylization control strategies. We also investigate the time efficiency of our approach by comparing three adaptive scheduling strategies. Finally, we demonstrate MechStyle’s user interface that allows users to generate stylized and structurally viable 3D models and provide five example applications.
SCF ’25, Cambridge, MA, USA
</summary>
<dc:date>2025-11-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Technology-Policy Handbook for Trans-Atlantic Nuclear Maritime Corridors: Ports, Infrastructure, and Safety</title>
<link href="https://hdl.handle.net/1721.1/164311" rel="alternate"/>
<author>
<name>Valiaveedu, Anthony</name>
</author>
<author>
<name>Edmonds, Nat</name>
</author>
<id>https://hdl.handle.net/1721.1/164311</id>
<updated>2026-03-31T17:34:46Z</updated>
<published>2025-12-12T00:00:00Z</published>
<summary type="text">Technology-Policy Handbook for Trans-Atlantic Nuclear Maritime Corridors: Ports, Infrastructure, and Safety
Valiaveedu, Anthony; Edmonds, Nat
On September 18, 2025, the United States and the United Kingdom published a Memorandum of Understanding (MoU) on scientific and technological advancement. This new partnership focuses on understanding and deploying disruptive technologies in Artificial Intelligence, quantum, and civil nuclear energy. Less highlighted was a single sentence within the MoU outlining efforts to "explore opportunities" for establishing a "maritime shipping corridor" between the US and UK. So far, research on civilian nuclear ships has generally prioritized ship design and operation analysis. This paper will instead analyze port, regulatory, and infrastructural issues within this space and provide a path forward for technology policy solutions supporting systems safety.
Advised by Jacopo Buongiorno, Eric Forrest, Fotini Christia, Koroush Shirvanm and Themis Sapsis.; Contact information: Anthony Valiaveedu (arv7@mit.edu); Nat Edmonds (edmondsn@mit.edu)
</summary>
<dc:date>2025-12-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>AI-assisted sensemaking: Human-AI collaboration for the analysis and interpretation of recorded facilitated conversations</title>
<link href="https://hdl.handle.net/1721.1/164310" rel="alternate"/>
<author>
<name>Kabbara, Jad</name>
</author>
<author>
<name>Phan, Thanh-Mai</name>
</author>
<author>
<name>Rakhilin, Marina</name>
</author>
<author>
<name>Detwiller, Maya</name>
</author>
<author>
<name>Dimitrakopoulou, Dimitra</name>
</author>
<author>
<name>Roy, Deb</name>
</author>
<id>https://hdl.handle.net/1721.1/164310</id>
<updated>2025-12-13T03:09:44Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">AI-assisted sensemaking: Human-AI collaboration for the analysis and interpretation of recorded facilitated conversations
Kabbara, Jad; Phan, Thanh-Mai; Rakhilin, Marina; Detwiller, Maya; Dimitrakopoulou, Dimitra; Roy, Deb
In light of growing toxic polarization and societal fragmentation often fueled by social media, we are designing alternative communication spaces we refer to as dialogue networks—networks of people engaged in recorded small-group prompted dialogue. We introduce the dialogue network framework and our use of tools powered by large language models that assist humans in the analysis and interpretation of themes and patterns across conversations which we refer to as sensemaking. We pilot case studies in collaboration with community partners using a prototype AI-assisted sensemaking tool. Insights from these pilots can inform the use of AI for human-led community engagement processes.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>$HealthGenie:$ A Knowledge-Driven LLM Framework for Tailored Dietary Guidance</title>
<link href="https://hdl.handle.net/1721.1/164309" rel="alternate"/>
<author>
<name>Gao, Fan</name>
</author>
<author>
<name>Zhao, Xinjie</name>
</author>
<author>
<name>Xia, Ding</name>
</author>
<author>
<name>Zhou, Zhongyi</name>
</author>
<author>
<name>Yang, Rui</name>
</author>
<author>
<name>Lu, Jinghui</name>
</author>
<author>
<name>Jiang, Hang</name>
</author>
<author>
<name>Park, Chanjun</name>
</author>
<author>
<name>Li, Irene</name>
</author>
<id>https://hdl.handle.net/1721.1/164309</id>
<updated>2025-12-13T03:10:10Z</updated>
<published>2025-11-10T00:00:00Z</published>
<summary type="text">$HealthGenie:$ A Knowledge-Driven LLM Framework for Tailored Dietary Guidance
Gao, Fan; Zhao, Xinjie; Xia, Ding; Zhou, Zhongyi; Yang, Rui; Lu, Jinghui; Jiang, Hang; Park, Chanjun; Li, Irene
Seeking dietary guidance often requires navigating complex nutritional knowledge while considering individual health needs. To address this, we present HealthGenie, an interactive platform that leverages the interpretability of knowledge graphs (KGs) and the conversational power of large language models (LLMs) to deliver tailored dietary recommendations alongside integrated nutritional visualizations for fast, intuitive insights. Upon receiving a user query, HealthGenie performs intent refinement and maps user's needs to a curated nutritional knowledge graph. The system then retrieves and visualizes relevant subgraphs, while offering detailed, explainable recommendations. Users can interactively adjust preferences to further tailor results. A within-subject study and quantitative analysis show that HealthGenie reduces cognitive load and interaction effort while supporting personalized, health-aware decision-making.
CIKM ’25, Seoul, Republic of Korea
</summary>
<dc:date>2025-11-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>TinkerXR: In-Situ, Reality-Aware CAD and 3D Printing Interface for Novices</title>
<link href="https://hdl.handle.net/1721.1/164308" rel="alternate"/>
<author>
<name>Arslan, O?uz</name>
</author>
<author>
<name>Akdo?an, Artun</name>
</author>
<author>
<name>Dogan, Mustafa Doga</name>
</author>
<id>https://hdl.handle.net/1721.1/164308</id>
<updated>2025-12-13T03:10:17Z</updated>
<published>2025-11-19T00:00:00Z</published>
<summary type="text">TinkerXR: In-Situ, Reality-Aware CAD and 3D Printing Interface for Novices
Arslan, O?uz; Akdo?an, Artun; Dogan, Mustafa Doga
Despite the growing accessibility of augmented reality (AR) for visualization, existing computer-aided design (CAD) systems remain confined to traditional screens or require complex setups or predefined parameters, limiting immersion and accessibility for novices. We present TinkerXR, an open-source AR interface enabling in-situ design and fabrication through Constructive Solid Geometry (CSG) modeling. TinkerXR operates solely with a headset and 3D printer, allowing users to design directly in and for their physical environments. By leveraging spatial awareness, depth occlusion, recognition of physical constraints, reference objects, and hand movement controls, TinkerXR enhances realism, precision, and ease of use. Its AR-based workflow integrates design and 3D printing with a drag-and-drop interface for printers’ virtual twins.&#13;
A user study comparing TinkerXR with Tinkercad shows that TinkerXR offers novices higher accessibility, engagement, and ease of use. Participants highlighted how designing directly in physical space made the process more intuitive. By bridging the gap between digital creation and physical output, TinkerXR aims to transform everyday spaces into expressive creative studios. We release TinkerXR as open source1 to encourage further exploration of accessible, spatially grounded CAD tools.
SCF ’25, Cambridge, MA, USA
</summary>
<dc:date>2025-11-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hierarchical Discrete Lattice Assembly: An Approach for the Digital Fabrication of Scalable Macroscale Structures</title>
<link href="https://hdl.handle.net/1721.1/164307" rel="alternate"/>
<author>
<name>Smith, Miana</name>
</author>
<author>
<name>Richard, Paul</name>
</author>
<author>
<name>Kyaw, Alexander</name>
</author>
<author>
<name>Gershenfeld, Neil</name>
</author>
<id>https://hdl.handle.net/1721.1/164307</id>
<updated>2025-12-13T03:10:19Z</updated>
<published>2025-11-19T00:00:00Z</published>
<summary type="text">Hierarchical Discrete Lattice Assembly: An Approach for the Digital Fabrication of Scalable Macroscale Structures
Smith, Miana; Richard, Paul; Kyaw, Alexander; Gershenfeld, Neil
Although digital fabrication processes at the desktop scale have become proficient and prolific, systems aimed at producing larger-scale structures are still typically complex, expensive, and unreliable. In this work, we present an approach for the fabrication of scalable macroscale structures using simple robots and interlocking lattice building blocks. A target structure is first voxelized so that it can be populated with an architected lattice. These voxels are then grouped into larger interconnected blocks, which are produced using standard digital fabrication processes, leveraging their capability to produce highly complex geometries at a small scale. These blocks, on the size scale of tens of centimeters, are then fed to mobile relative robots that are able to traverse over the structure and place new blocks to form structures on the meter scale. To facilitate the assembly of large structures, we introduce a live digital twin simulation tool for controlling and coordinating assembly robots that enables both global planning for a target structure and live user design, interaction, or intervention. To improve assembly throughput, we introduce a new modular assembly robot, designed for hierarchical voxel handling. We validate this system by demonstrating the voxelization, hierarchical blocking, path planning, and robotic fabrication of a set of meter-scale objects.
SCF ’25, Cambridge, MA, USA
</summary>
<dc:date>2025-11-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Are Crypto Ecosystems (De)centralizing? A Framework for Longitudinal Analysis</title>
<link href="https://hdl.handle.net/1721.1/164306" rel="alternate"/>
<author>
<name>Ju, Harang</name>
</author>
<author>
<name>Valavi, Eshan</name>
</author>
<author>
<name>Kumar, Madhav</name>
</author>
<author>
<name>Aral, Sinan</name>
</author>
<id>https://hdl.handle.net/1721.1/164306</id>
<updated>2025-12-13T03:10:12Z</updated>
<published>2025-11-24T00:00:00Z</published>
<summary type="text">Are Crypto Ecosystems (De)centralizing? A Framework for Longitudinal Analysis
Ju, Harang; Valavi, Eshan; Kumar, Madhav; Aral, Sinan
Blockchain technology relies on decentralization to resist faults and attacks while operating without trusted intermediaries. Although industry experts have touted decentralization as central to their promise and disruptive potential, it is still unclear whether the crypto ecosystems built around blockchains are becoming more or less decentralized over time. As crypto plays an increasing role in facilitating economic transactions and peer-to-peer interactions, measuring their decentralization becomes even more essential.We thus propose a systematic framework for measuring the decentralization of crypto ecosystems over time and compare commonly used decentralization metrics. We applied this framework to seven prominent blockchains, across five distinct subsystems and across their lifetime for over 15 years. Our analysis revealed that while crypto has largely become more decentralized over time, recent trends show a shift toward centralization in the consensus layer, NFT marketplaces, and developers. Our framework and results inform researchers, policymakers, and practitioners about the design, regulation, and implementation of crypto ecosystems and provide a systematic, replicable foundation for future studies.
</summary>
<dc:date>2025-11-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>MIT hosts 11th Undergraduate Research Technology Conference</title>
<link href="https://hdl.handle.net/1721.1/164305" rel="alternate"/>
<author>
<name>Beyah, Malakhi</name>
</author>
<author>
<name>Placides, Jojo</name>
</author>
<id>https://hdl.handle.net/1721.1/164305</id>
<updated>2025-12-13T03:12:15Z</updated>
<published>2025-10-30T00:00:00Z</published>
<summary type="text">MIT hosts 11th Undergraduate Research Technology Conference
Beyah, Malakhi; Placides, Jojo
From Oct. 10 to Oct. 12, the Stata Center was abuzz with bright minds and fresh faces as the Institute geared up for its 11th annual Undergraduate Research Technology Conference (URTC), where high school and undergraduate students from across the country came to present their latest research to experts and industry leaders.
</summary>
<dc:date>2025-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multimodal AI for Human Sensing and Interaction</title>
<link href="https://hdl.handle.net/1721.1/164304" rel="alternate"/>
<author>
<name>Liang, Paul Pu</name>
</author>
<author>
<name>Ahuja, Karan</name>
</author>
<author>
<name>Luo, Yiyue</name>
</author>
<id>https://hdl.handle.net/1721.1/164304</id>
<updated>2025-12-13T03:09:38Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Multimodal AI for Human Sensing and Interaction
Liang, Paul Pu; Ahuja, Karan; Luo, Yiyue
A significant body of HCI research today focuses on applying AI to sense, learn, and interact with humans through a wide range of wearable and ubiquitous sensors. These methods typically involve learning features from multimodal sensory data using AI methods. To aid HCI researchers who want to apply AI to their sensing problems, this course will cover the fundamental challenges and approaches in multimodal AI for human sensing and interaction. It is planned for 3 parts, one given by each organizer. The first covers the foundations of multimodal AI, studying how AI systems can represent, combine, and learn information from many interconnected sensory inputs. The second part discusses the practice of multimodal AI for human sensing, covering the latest methods for cross-modal learning across diverse sensors, human-centered application domains, and real-world concerns around their usage. The final part covers the hardware, fabrication, and data collection challenges that must be tackled to deploy these multimodal AI systems in the real world. By the end of this course, attendees should understand the fundamental principles and challenges of multimodal AI, identify the right AI approaches for their problems, prototype basic hardware systems for efficient and robust sensing, be aware of real-world concerns around ethics, interpretability, and privacy, and appreciate the range of human-centered applications enabled by multimodal AI and sensing.
CHI EA ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Deep-Time Architecture: Building as Material-Event</title>
<link href="https://hdl.handle.net/1721.1/164303" rel="alternate"/>
<author>
<name>Alonso, Cristina Parreño</name>
</author>
<id>https://hdl.handle.net/1721.1/164303</id>
<updated>2025-12-13T03:10:47Z</updated>
<published>2021-01-02T00:00:00Z</published>
<summary type="text">Deep-Time Architecture: Building as Material-Event
Alonso, Cristina Parreño
Despite our tendency to conceive, perceive, and represent buildings as static objects, buildings are, in their abundant reality, matter and energy in flux. As Heraclitus famously remarked in his panta rhei (πάντα ῥεῖ,): “everything flows.”1 Buildings are no different, and they need to be better thought through as entities in motion. In architectural literature, many voices have challenged the prevailing notion of the building as a static object. Bruno Latour, for instance, claims that a building is rather “a moving project, and that even once it has been built, it ages, it is transformed by its users, modified by all of what happens inside and outside, and that it will pass or be renovated, adulterated and transformed beyond recognition.”2 Another attempt to express architecture’s fluidity is Bernard Tschumi’s triad, “space, event and movement,” with which he aimed to expand what constitutes building beyond a static object and form: “There is no space without event, no architecture without movement.”3 And here we must add that there is no movement without time—and further, that given enough time, even a solid-like material (think of a building here) flows.
</summary>
<dc:date>2021-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Involuntary vs. voluntary flexible work: insights for scholars and stakeholders</title>
<link href="https://hdl.handle.net/1721.1/164302" rel="alternate"/>
<author>
<name>Kaduk, Anne</name>
</author>
<author>
<name>Genadek, Katie</name>
</author>
<author>
<name>Kelly, Erin L</name>
</author>
<author>
<name>Moen, Phyllis</name>
</author>
<id>https://hdl.handle.net/1721.1/164302</id>
<updated>2025-12-13T03:10:26Z</updated>
<published>2019-08-08T00:00:00Z</published>
<summary type="text">Involuntary vs. voluntary flexible work: insights for scholars and stakeholders
Kaduk, Anne; Genadek, Katie; Kelly, Erin L; Moen, Phyllis
Building on insights from the early stages of our research partnership with a U.S. Fortune 500 organization, we came to differentiate between voluntary and involuntary schedule variability and remote work. This differentiation underscores the complexity behind flexible schedules and remote work, especially among white-collar, salaried professionals. We collected survey data among the partner firm's information technology (IT) workforce to evaluate whether these forms of flexibility had different implications for workers, as part of the larger Work, Family, and Health Network Study. We find that a significant minority of these employees report working variable schedules and working at home involuntarily. Involuntary variable schedules are associated with greater work-to-family conflict, stress, burnout, turnover intentions, and lower job satisfaction in models that adjust for personal characteristics, job, work hours, family demands, and other factors. Voluntary remote work, in contrast, is protective and more common in this professional sample. Employees working at least 20% of their hours at home and reporting moderate or high choice over where they work have lower stress and intentions to leave the firm. These findings point to the importance of both stakeholders and scholars distinguishing between voluntary and involuntary forms of flexibility, even in a relatively advantaged workforce.
</summary>
<dc:date>2019-08-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Machine learning demand forecasting and supply chain performance</title>
<link href="https://hdl.handle.net/1721.1/164301" rel="alternate"/>
<author>
<name>Feizabadi, Javad</name>
</author>
<id>https://hdl.handle.net/1721.1/164301</id>
<updated>2025-12-13T03:10:33Z</updated>
<published>2020-08-04T00:00:00Z</published>
<summary type="text">Machine learning demand forecasting and supply chain performance
Feizabadi, Javad
In many supply chains, firms staged in upstream of the chain suffer from variance amplification emanating from demand information distortion in a multi-stage supply chain and, consequently, their operation inefficiency. Prior research suggest that employing advanced demand forecasting, such as machine learning, could mitigate the effect and improve the performance; however, it is less known what is the extent and magnitude of savings as tangible supply chain performance outcomes. In this research, hybrid demand forecasting methods grounded on machine learning i.e. ARIMAX and Neural Network is developed. Both time series and explanatory factors are feed into the developed method. The method was applied and evaluated in the context of functional product and a steel manufacturer. The statistically significant supply chain performance improvement differences were found across traditional and ML-based demand forecasting methods. The implications for the theory and practice are also presented.
</summary>
<dc:date>2020-08-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>The future of sperm: a biovariability framework for understanding global sperm count trends</title>
<link href="https://hdl.handle.net/1721.1/164300" rel="alternate"/>
<author>
<name>Boulicault, Marion</name>
</author>
<author>
<name>Perret, Meg</name>
</author>
<author>
<name>Galka, Jonathan</name>
</author>
<author>
<name>Borsa, Alex</name>
</author>
<author>
<name>Gompers, Annika</name>
</author>
<author>
<name>Reiches, Meredith</name>
</author>
<author>
<name>Richardson, Sarah</name>
</author>
<id>https://hdl.handle.net/1721.1/164300</id>
<updated>2025-12-13T03:10:46Z</updated>
<published>2021-05-10T00:00:00Z</published>
<summary type="text">The future of sperm: a biovariability framework for understanding global sperm count trends
Boulicault, Marion; Perret, Meg; Galka, Jonathan; Borsa, Alex; Gompers, Annika; Reiches, Meredith; Richardson, Sarah
The past 50 years have seen heated debate in the reproductive sciences about global trends in human sperm count. In 2017, Levine and colleagues published the largest and most methodologically rigorous meta-regression analysis to date and reported that average total sperm concentration among men from ‘Western’ countries has decreased by 59.3% since 1973, with no sign of halting. These results reverberated in the scientific community and in public discussions about men and masculinity in the modern world, in part because of scientists’ public-facing claims about the societal implications of the decline of male fertility. We find that existing research follows a set of implicit and explicit assumptions about how to measure and interpret sperm counts, which collectively form what we term the Sperm Count Decline hypothesis (SCD). Using the study by Levine and colleagues, we identify weaknesses and inconsistencies in the SCD, and propose an alternative framework to guide research on sperm count trends: the Sperm Count Biovariability hypothesis (SCB). SCB asserts that sperm count varies within a wide range, much of which can be considered non-pathological and species-typical. Knowledge about the relationship between individual and population sperm count and life-historical and ecological factors is critical to interpreting trends in average sperm counts and their relationships to health and fertility.
</summary>
<dc:date>2021-05-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Estimating Pedestrian Flows on Street Networks</title>
<link href="https://hdl.handle.net/1721.1/164299" rel="alternate"/>
<author>
<name>Sevtsuk, Andres</name>
</author>
<id>https://hdl.handle.net/1721.1/164299</id>
<updated>2025-12-13T03:10:41Z</updated>
<published>2021-10-02T00:00:00Z</published>
<summary type="text">Estimating Pedestrian Flows on Street Networks
Sevtsuk, Andres
City governments and planners alike commonly seek to increase pedestrian activity on city streets as part of broader sustainability, community building, and economic development strategies. Though walkability has received ample attention in planning literature, most planners still lack practical methods for predicting how development proposals could affect pedestrian activity on specific streets or public spaces at different times of the day. Cities typically require traffic impact assessments (TIAs) but not pedestrian impact assessments. In this study I present a methodology for estimating pedestrian trip generation and distribution between detailed origins and destinations in both existing and proposed built environments. Using the betweenness index from network analysis, I introduce a number of methodological improvements that allow the index to model pedestrian trips with parameters and constraints to account for pedestrian behavior in different settings. I demonstrate its application in the Kendall Square area of Cambridge (MA), where estimated foot traffic is compared during lunch and evening peak periods with observed pedestrian counts. The proposed approach can be particularly useful for TIAs, neighborhood plans, and large-scale development projects, where pedestrian flow estimates can be used to guide pedestrian infrastructure and safety improvements and public space investments or for locating pedestrian priority streets during the COVID-19 pandemic.
</summary>
<dc:date>2021-10-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Understanding individuals with spinal cord injury’s self-care practices: a technology probe study to promote pressure relief adherence</title>
<link href="https://hdl.handle.net/1721.1/164298" rel="alternate"/>
<author>
<name>Oh, Hannah Hye Yeon</name>
</author>
<author>
<name>Pontis, Sheila</name>
</author>
<id>https://hdl.handle.net/1721.1/164298</id>
<updated>2025-12-13T03:10:23Z</updated>
<published>2024-10-02T00:00:00Z</published>
<summary type="text">Understanding individuals with spinal cord injury’s self-care practices: a technology probe study to promote pressure relief adherence
Oh, Hannah Hye Yeon; Pontis, Sheila
Pressure reliefs (PRs) are self-care practices essential for individuals with spinal cord injury (SCI) to prevent life-threatening pressure injuries (PIs). Despite the benefits, individuals often do not do these exercises at home, leading to increased patient morbidity and mortality. To examine how digital technology could improve this population's adherence to PR exercises, we conducted a technology probe study with five individuals with SCI over ten consecutive business days. A chat-based intervention was created to send user-scheduled PR reminders, which were personalized with visual elements and progress trackers. Participants were interviewed before and after interacting with the probe to better understand their experiences with PIs and PR practices. Results shed light on specific factors that may impact individuals with SCI's behaviours towards PRs and four considerations to design a customisable reminder intervention: (1) easy to use and friendly technology, (2) design-your-own- schedule feature, (3) communication style feature, and (4) dialogue support features. Personalisation supported with gamified visual progress tracking and motivational messages emerged as a strong strategy to increase PR adherence. Both sets of findings expand upon the human-computer interaction (HCI) literature for mobile health tools that encourage self-care practices; in particular, to the specific needs of individuals with SCI and the use of visual elements to increase engagement.
</summary>
<dc:date>2024-10-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Health and toxicity in content moderation: the discursive work of justification</title>
<link href="https://hdl.handle.net/1721.1/164297" rel="alternate"/>
<author>
<name>Gibson, Anna D.</name>
</author>
<author>
<name>Docherty, Niall</name>
</author>
<author>
<name>Gillespie, Tarleton</name>
</author>
<id>https://hdl.handle.net/1721.1/164297</id>
<updated>2025-12-13T03:10:25Z</updated>
<published>2023-12-12T00:00:00Z</published>
<summary type="text">Health and toxicity in content moderation: the discursive work of justification
Gibson, Anna D.; Docherty, Niall; Gillespie, Tarleton
Within academia, industry, and government, the terms ‘health’ and ‘toxicity’ are widely used to describe and justify decisions around online content and its removal. However, the meanings of these terms are assumed to be self-evident and therefore are rarely examined. This article turns a critical eye to the health and toxicity metaphor to unpack its hidden political work. We trace the metaphor through three different discourses: the historical political economy of the term, the usage by cultural elites in the last two decades, and finally through its contemporary instrumental usage by volunteer content moderators on Facebook. By linking these discourses together, we argue that the metaphor of health and toxicity serves as a means for justification and legitimacy under contemporary neoliberalized orders that typically chafe at modes of public intervention and the language of democratic statecraft. Rather than elucidating the challenges of online content, we find that the metaphor often serves to obfuscate or sidestep the hardest problems in democratic governance. This analysis therefore has practical significance for researchers, policymakers, journalists, and other speakers that publicly traffic in this discourse at large.
</summary>
<dc:date>2023-12-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Balancing Covariates in Randomized Experiments with the Gram–Schmidt Walk Design</title>
<link href="https://hdl.handle.net/1721.1/164296" rel="alternate"/>
<author>
<name>Harshaw, Christopher</name>
</author>
<author>
<name>Sävje, Fredrik</name>
</author>
<author>
<name>Spielman, Daniel A</name>
</author>
<author>
<name>Zhang, Peng</name>
</author>
<id>https://hdl.handle.net/1721.1/164296</id>
<updated>2025-12-13T03:10:28Z</updated>
<published>2024-10-01T00:00:00Z</published>
<summary type="text">Balancing Covariates in Randomized Experiments with the Gram–Schmidt Walk Design
Harshaw, Christopher; Sävje, Fredrik; Spielman, Daniel A; Zhang, Peng
The design of experiments involves a compromise between covariate balance and robustness. This article provides a formalization of this tradeoff and describes an experimental design that allows experimenters to navigate it. The design is specified by a robustness parameter that bounds the worst-case mean squared error of an estimator of the average treatment effect. Subject to the experimenter’s desired level of robustness, the design aims to simultaneously balance all linear functions of potentially many covariates. Less robustness allows for more balance. We show that the mean squared error of the estimator is bounded in finite samples by the minimum of the loss function of an implicit ridge regression of the potential outcomes on the covariates. Asymptotically, the design perfectly balances all linear functions of a growing number of covariates with a diminishing reduction in robustness, effectively allowing experimenters to escape the compromise between balance and robustness in large samples. Finally, we describe conditions that ensure asymptotic normality and provide a conservative variance estimator, which facilitate the construction of asymptotically valid confidence intervals. Supplementary materials for this article are available online.
</summary>
<dc:date>2024-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>From natural language to simulations: applying AI to automate simulation modelling of logistics systems</title>
<link href="https://hdl.handle.net/1721.1/164295" rel="alternate"/>
<author>
<name>Jackson, Ilya</name>
</author>
<author>
<name>Jesus Saenz, Maria</name>
</author>
<author>
<name>Ivanov, Dmitry</name>
</author>
<id>https://hdl.handle.net/1721.1/164295</id>
<updated>2025-12-13T03:10:49Z</updated>
<published>2024-02-16T00:00:00Z</published>
<summary type="text">From natural language to simulations: applying AI to automate simulation modelling of logistics systems
Jackson, Ilya; Jesus Saenz, Maria; Ivanov, Dmitry
Our research strives to examine how simulation models of logistics systems can be produced automatically from verbal descriptions in natural language and how human experts and artificial intelligence (AI)-based systems can collaborate in the domain of simulation modelling. We demonstrate that a framework constructed upon the refined GPT-3 Codex is capable of generating functionally valid simulations for queuing and inventory management systems when provided with a verbal explanation. As a result, the language model could produce simulation models for inventory and process control. These results, along with the rapid improvement of language models, enable a significant simplification of simulation model development. Our study offers guidelines and a design of a natural language processing-based framework on how to build simulation models of logistics systems automatically, given the verbal description. In generalised terms, our work offers a technological underpinning of human-AI collaboration for the development of simulation models.
</summary>
<dc:date>2024-02-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>HiTop 2.0: combining topology optimisation with multiple feature size controls and human preferences</title>
<link href="https://hdl.handle.net/1721.1/164294" rel="alternate"/>
<author>
<name>Schiffer, Gillian</name>
</author>
<author>
<name>Ha, Dat Quoc</name>
</author>
<author>
<name>Carstensen, Josephine V</name>
</author>
<id>https://hdl.handle.net/1721.1/164294</id>
<updated>2025-12-13T03:10:43Z</updated>
<published>2023-12-31T00:00:00Z</published>
<summary type="text">HiTop 2.0: combining topology optimisation with multiple feature size controls and human preferences
Schiffer, Gillian; Ha, Dat Quoc; Carstensen, Josephine V
Topology optimisation is a computational design approach that generates high-performing, efficient structures uniquely suited to a design engineer’s goal. However, there exist two major obstacles to the accessibility, or ease of use, of topology optimisation: expensive computational costs and users’ binary decision between personal intuition and the algorithm’s result. Human-informed topology optimisation, or HiTop, presents an alternative approach to topology optimisation when a user lacks access to a high-performance computer or knowledge of code parameters. HiTop 2.0 prompts users to interactively identify a region of interest in the preliminary design and modify the size of the solid and/or void features. The novel contribution of this paper implements multi-phase minimum and maximum solid feature size controls in HiTop 2.0, and demonstrates 2D and 3D benchmark examples, including test cases that show how the user can interactively enhance issues related to eigenvalues, stress, and energy absorption, while solving the minimum compliance problem.
</summary>
<dc:date>2023-12-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Integrated urban heat sinks for low-carbon neighbourhoods: dissipating heat to the ground and sky through building structures</title>
<link href="https://hdl.handle.net/1721.1/164293" rel="alternate"/>
<author>
<name>Gascón Alvarez, Eduardo</name>
</author>
<author>
<name>Feickert, Kiley</name>
</author>
<author>
<name>Ismail, Mohamed A</name>
</author>
<author>
<name>Mueller, Caitlin T</name>
</author>
<author>
<name>Norford, Leslie K</name>
</author>
<id>https://hdl.handle.net/1721.1/164293</id>
<updated>2025-12-13T03:10:39Z</updated>
<published>2025-05-04T00:00:00Z</published>
<summary type="text">Integrated urban heat sinks for low-carbon neighbourhoods: dissipating heat to the ground and sky through building structures
Gascón Alvarez, Eduardo; Feickert, Kiley; Ismail, Mohamed A; Mueller, Caitlin T; Norford, Leslie K
In a global context of simultaneous urbanization and rising ambient temperatures, it is imperative to design heat-resilient and material-efficient neighbourhoods that respond to the pressing demand for housing with minimal environmental impact. With this goal in mind, the work presented here focuses on the integration of heat dissipation systems within structural building components, introducing a novel framework for their systems-level simulation and design. Two well-studied, low-cost systems (shallow geothermal and night-sky cooling) are modelled within a parametric design workflow that combines bottom-up structural embodied carbon calculations with annual building energy simulations that account for heat sink availability. The proposed method results in a fast and reliable early-stage design tool that allows urban planners, policymakers, and designers to evaluate the suitability of available heat dissipation technologies across climates and urban morphologies. This paper analyzes specifically the multi-domain performance of a hypothetical urban geometry within three different cooling-dominated locations (Algiers, Cairo, and Bangkok).
</summary>
<dc:date>2025-05-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>China’s Potential Lessons from Ukraine for Conflict over Taiwan</title>
<link href="https://hdl.handle.net/1721.1/164292" rel="alternate"/>
<author>
<name>Taylor Fravel, M</name>
</author>
<id>https://hdl.handle.net/1721.1/164292</id>
<updated>2025-12-13T03:10:34Z</updated>
<published>2023-07-03T00:00:00Z</published>
<summary type="text">China’s Potential Lessons from Ukraine for Conflict over Taiwan
Taylor Fravel, M
What lessons for a conflict over Taiwan might China be learning from Russia’s invasion of Ukraine and the global responses to the war? And what are the strategic implications of these lessons? To answer these questions, I examine how the war in Ukraine may be shaping China’s assessments of the political, military and economic costs of military action against Taiwan, and how these assessments may influence China’s decision to use force against Taiwan.
</summary>
<dc:date>2023-07-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>BoundarEase: Fostering Constructive Community Engagement to Inform More Equitable Student Assignment Policies</title>
<link href="https://hdl.handle.net/1721.1/164291" rel="alternate"/>
<author>
<name>Overney, Cassandra</name>
</author>
<author>
<name>Moe, Cassandra</name>
</author>
<author>
<name>Chang, Alvin</name>
</author>
<author>
<name>Gillani, Nabeel</name>
</author>
<id>https://hdl.handle.net/1721.1/164291</id>
<updated>2025-12-12T05:25:02Z</updated>
<published>2025-05-02T00:00:00Z</published>
<summary type="text">BoundarEase: Fostering Constructive Community Engagement to Inform More Equitable Student Assignment Policies
Overney, Cassandra; Moe, Cassandra; Chang, Alvin; Gillani, Nabeel
Public school districts across the United States (US) play a pivotal role in shaping access to quality education&#13;
through their student assignment policies—most prominently, school attendance boundaries. Community&#13;
engagement processes for changing such policies, however, are often opaque, cumbersome, and highly&#13;
polarizing—hampering equitable access to quality schools in ways that can perpetuate disparities in achievement and future life outcomes. In this paper, we describe a collaboration with a large US public school district&#13;
serving nearly 150,000 students to design and evaluate a new sociotechnical system, “BoundarEase”, for&#13;
fostering more constructive community engagement around changing school attendance boundaries. Through&#13;
a formative study with 16 community members, we first identify several frictions in existing community&#13;
engagement processes during boundary planning, like individualistic over collective thinking; a failure to understand and empathize with different community members when considering policy impacts; and challenges&#13;
in accessing and understanding the impacts of boundary changes. We then use these frictions to inspire the&#13;
design and development of BoundarEase, a web platform that allows community members to explore and&#13;
offer feedback on potential boundaries based on their preferences. A user study with 12 community members&#13;
reveals that BoundarEase prompts reflection among community members on how policies might impact&#13;
families beyond their own, and increases transparency around the details of policy proposals. Our paper offers&#13;
education researchers insights into the challenges and opportunities involved in community engagement for&#13;
designing student assignment policies; human-computer interaction researchers a case study of how new&#13;
sociotechnical systems might help mitigate polarization in local policymaking; and school districts a practical&#13;
tool they might use to facilitate community engagement to foster more equitable student assignment policies.
Cassandra Overney, Cassandra Moe, Alvin Chang, and Nabeel Gillani. 2025. BoundarEase: Fostering Constructive Community Engagement to Inform More Equitable Student Assignment Policies. Proc. ACM Hum.-Comput. Interact. 9, 2, Article CSCW040 (May 2025), 37 pages.
</summary>
<dc:date>2025-05-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multi-objective Evolutionary Learning for Near Pareto-Optimal Optimization of Solar Deployment</title>
<link href="https://hdl.handle.net/1721.1/164290" rel="alternate"/>
<author>
<name>Sigrist, Cooper</name>
</author>
<author>
<name>Li, Archimedes</name>
</author>
<author>
<name>Zhang, Alice</name>
</author>
<author>
<name>Lechowicz, Adam</name>
</author>
<author>
<name>Bashir, Noman</name>
</author>
<author>
<name>Lertsaroj, Pichsinee</name>
</author>
<author>
<name>Bahlous-Boldi, Ryan</name>
</author>
<author>
<name>Hajiesmaili, Mohammad</name>
</author>
<id>https://hdl.handle.net/1721.1/164290</id>
<updated>2025-12-12T05:25:52Z</updated>
<published>2025-11-11T00:00:00Z</published>
<summary type="text">Multi-objective Evolutionary Learning for Near Pareto-Optimal Optimization of Solar Deployment
Sigrist, Cooper; Li, Archimedes; Zhang, Alice; Lechowicz, Adam; Bashir, Noman; Lertsaroj, Pichsinee; Bahlous-Boldi, Ryan; Hajiesmaili, Mohammad
Existing residential rooftop photovoltaic (PV) installations in the United States are inequitable, as they are concentrated in high-income neighborhoods, and carbon-inefficient because they are often not located in electric grids dominated by fossil-fuel generators. Prior work, however, shows that prioritizing socioeconomic equity can also significantly increase the carbon efficiency of new installations. In this paper, we formalize the problem of site selection for rooftop PV installations as a multi-objective optimization problem, with metrics including energy generation, carbon offsetting, and demographic equity. We introduce a novel method called Evolutionary Value Assignment (EVA) that uses a neural network trained via evolutionary learning to select ideal sites for deployment. We evaluate our proposed approach in a case study using a dataset of U.S. solar generation and demographic information. Compared to projections of current installation trends, our method improves Carbon Efficiency by 43%, Income Equity by 41%, and Racial Equity by 24%, while increasing Energy Generation Potential by up to 10%. Therefore, our optimized placement can achieve the estimated carbon offset needed for net-zero emissions from electricity generation earlier than current deployment trends.
BUILDSYS ’25, Golden, CO, USA
</summary>
<dc:date>2025-11-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Robust and expert-agnostic digital twin calibration via ensemble learning and Bayesian optimization</title>
<link href="https://hdl.handle.net/1721.1/164289" rel="alternate"/>
<author>
<name>Zhan, Sicheng</name>
</author>
<author>
<name>Cui, Bosen</name>
</author>
<id>https://hdl.handle.net/1721.1/164289</id>
<updated>2025-12-12T05:25:38Z</updated>
<published>2025-11-11T00:00:00Z</published>
<summary type="text">Robust and expert-agnostic digital twin calibration via ensemble learning and Bayesian optimization
Zhan, Sicheng; Cui, Bosen
Digital twins have emerged as a critical tool in tackling climate change. Considering the data scarcity of complex systems, a promising approach to developing digital twins involves combining physics-based models with data assimilation. However, model calibration remains challenging due to uncertainties in both the physical models and observational data, and the reliance on domain knowledge. In this study, we develop an ensemble learning-based approach that aggregates sub-models with diversified calibration configurations. The proposed method streamlines calibration without expert-driven parameter screening and improves the digital twin's extrapolation capability, enabling more robust predictive applications. We demonstrate the effectiveness of our approach by calibrating the energy model of an office building, significantly reducing the extrapolation error and the associated risks. To the best of our knowledge, this is the first study to facilitate the calibration of physics-based models using ensemble learning, especially in the parameter space.
BUILDSYS ’25, Golden, CO, USA
</summary>
<dc:date>2025-11-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Talk to the Hand: an LLM-powered Chatbot with Visual Pointer as Proactive Companion for On-Screen Tasks</title>
<link href="https://hdl.handle.net/1721.1/164288" rel="alternate"/>
<author>
<name>Prasongpongchai, Thanawit</name>
</author>
<author>
<name>Pataranutaporn, Pat</name>
</author>
<author>
<name>Lertsutthiwong, Monchai</name>
</author>
<author>
<name>Maes, Pattie</name>
</author>
<id>https://hdl.handle.net/1721.1/164288</id>
<updated>2025-12-12T05:21:10Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Talk to the Hand: an LLM-powered Chatbot with Visual Pointer as Proactive Companion for On-Screen Tasks
Prasongpongchai, Thanawit; Pataranutaporn, Pat; Lertsutthiwong, Monchai; Maes, Pattie
This paper presents Pointer Assistant, a novel human-AI interaction technique for on-screen tasks. The design features a chatbot displayed as an extra mouse pointer, alongside the user’s, which proactively gives feedback on user actions while directing them to relevant areas on the screen and responding to the user’s direct chat messages. The effectiveness of the design’s key characteristics, pointer form and proactivity, was investigated in a study involving 220 participants in a financial budget planning task. Results demonstrated that the pointer design and interaction reduced task load while improving satisfaction with the experience, and increased the number of budget categories ideated during the task compared to the traditional passive chat log design. Participants viewed Pointer Assistant as a fun, innovative, and helpful visual guide while noting that its assertiveness can be improved. Future developments could offer even further enhancements to the user experience of human-AI collaboration and task outcomes.
CHI ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>WireBend-kit: A Computational Design and Fabrication Toolkit for Wirebending Custom 3D Wireframe Structures</title>
<link href="https://hdl.handle.net/1721.1/164287" rel="alternate"/>
<author>
<name>Faruqi, Faraz</name>
</author>
<author>
<name>Paonaskar, Josha</name>
</author>
<author>
<name>Schuler, Riley</name>
</author>
<author>
<name>Prevey, Aiden</name>
</author>
<author>
<name>Taylor, Carson</name>
</author>
<author>
<name>Tak, Anika</name>
</author>
<author>
<name>Guinto, Anthony</name>
</author>
<author>
<name>Shilamkar, Eeshani</name>
</author>
<author>
<name>Cheenaruenthong, Natarith</name>
</author>
<author>
<name>Nisser, Martin</name>
</author>
<id>https://hdl.handle.net/1721.1/164287</id>
<updated>2025-12-12T05:25:40Z</updated>
<published>2025-11-19T00:00:00Z</published>
<summary type="text">WireBend-kit: A Computational Design and Fabrication Toolkit for Wirebending Custom 3D Wireframe Structures
Faruqi, Faraz; Paonaskar, Josha; Schuler, Riley; Prevey, Aiden; Taylor, Carson; Tak, Anika; Guinto, Anthony; Shilamkar, Eeshani; Cheenaruenthong, Natarith; Nisser, Martin
This paper introduces WireBend-kit, a desktop wirebending machine and computational design tool for creating 3D wireframe structures. Combined, they allow users to rapidly and inexpensively create custom 3D wireframe structures from aluminum wire. Our design tool is implemented in freely available software and allows users to generate virtual wireframe designs and assess their fabricability. A path-planning procedure automatically converts the wireframe design into fabrication instructions for our machine while accounting for material elasticity and kinematic error sources. The custom machine costs $293 in parts and can form aluminum wire into 3D wireframe structures through an ordered sequence of feed, bend, and rotate instructions. Our technical evaluation reveals our system’s ability to overcome odometrically accumulating errors inherent to wirebending in order to produce accurate 3D structures from inexpensive hardware. Finally, we provide application examples demonstrating the design space enabled by Wirebend-kit.
SCF ’25, Cambridge, MA, USA
</summary>
<dc:date>2025-11-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bias Delayed is Bias Denied? Assessing the Effect of Reporting Delays on Disparity Assessments</title>
<link href="https://hdl.handle.net/1721.1/164286" rel="alternate"/>
<author>
<name>Gosciak, Jennah</name>
</author>
<author>
<name>Balagopalan, Aparna</name>
</author>
<author>
<name>Ouyang, Derek</name>
</author>
<author>
<name>Koenecke, Allison</name>
</author>
<author>
<name>Ghassemi, Marzyeh</name>
</author>
<author>
<name>Ho, Daniel</name>
</author>
<id>https://hdl.handle.net/1721.1/164286</id>
<updated>2025-12-12T05:25:05Z</updated>
<published>2025-06-23T00:00:00Z</published>
<summary type="text">Bias Delayed is Bias Denied? Assessing the Effect of Reporting Delays on Disparity Assessments
Gosciak, Jennah; Balagopalan, Aparna; Ouyang, Derek; Koenecke, Allison; Ghassemi, Marzyeh; Ho, Daniel
Prior work has documented widespread racial and ethnic inequities across sectors, such as healthcare, finance, and technology. Across all of these domains, conducting disparity assessments at regular time intervals is critical for surfacing potential biases in decision-making and improving outcomes across demographic groups. Because disparity assessments fundamentally depend on the availability of demographic information, their efficacy is limited by the availability and consistency of available demographic identifiers. While prior work has considered the impact of missing data on fairness, little attention has been paid to the role of delayed demographic data. Delayed data, while eventually observed, might be missing at the critical point of monitoring and action – and delays may be unequally distributed across groups in ways that distort disparity assessments. We characterize such impacts in healthcare, using electronic health records of over 5M patients across primary care practices in all 50 states. Our contributions are threefold. First, we document the high rate of race and ethnicity reporting delays in a healthcare setting and demonstrate widespread variation in rates at which demographics are reported across different groups. Second, through a set of retrospective analyses using real data, we find that such delays impact disparity assessments and hence conclusions made across a range of consequential healthcare outcomes, particularly at more granular levels of state-level and practice-level assessments. Third, we find limited ability of conventional methods that impute missing race in mitigating the effects of reporting delays on the accuracy of timely disparity assessments. Our insights and methods generalize to many domains of algorithmic fairness where delays in the availability of sensitive information may confound audits, thus deserving closer attention within a pipeline-aware machine learning framework.
FAccT ’25, Athens, Greece
</summary>
<dc:date>2025-06-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Securing Cryptographic Software via Typed Assembly Language</title>
<link href="https://hdl.handle.net/1721.1/164285" rel="alternate"/>
<author>
<name>Song, Shixin</name>
</author>
<author>
<name>Dong, Tingzhen</name>
</author>
<author>
<name>Nwabueze, Kosi</name>
</author>
<author>
<name>Zanders, Julian</name>
</author>
<author>
<name>Erbsen, Andres</name>
</author>
<author>
<name>Chlipala, Adam</name>
</author>
<author>
<name>Yan, Mengjia</name>
</author>
<id>https://hdl.handle.net/1721.1/164285</id>
<updated>2025-12-12T05:25:37Z</updated>
<published>2025-11-22T00:00:00Z</published>
<summary type="text">Securing Cryptographic Software via Typed Assembly Language
Song, Shixin; Dong, Tingzhen; Nwabueze, Kosi; Zanders, Julian; Erbsen, Andres; Chlipala, Adam; Yan, Mengjia
Authors of cryptographic software are well aware that their code should not leak secrets through its timing behavior, and, until 2018, they believed that following industry-standard constant-time coding guidelines was sufficient. However, the revelation of the Spectre family of speculative execution attacks injected new complexities.&#13;
To block speculative attacks, prior work has proposed annotating the program's source code to mark secret data, with hardware using this information to decide when to speculate (i.e., when only public values are involved) or not (when secrets are in play). While these solutions are able to track secret information stored on the heap, they suffer from limitations that prevent them from correctly tracking secrets on the stack, at a cost in performance.&#13;
This paper introduces SecSep, a transformation framework that rewrites assembly programs so that they partition secret and public data on the stack. By moving from the source-code level to assembly rewriting, SecSep is able to address limitations of prior work. The key challenge in performing this assembly rewriting stems from the loss of semantic information through the lengthy compilation process. The key innovation of our methodology is a new variant of typed assembly language (TAL), Octal, which allows us to address this challenge. Assembly rewriting is driven by compile-time inference within Octal. We apply our technique to cryptographic programs and demonstrate that it enables secure speculation efficiently, incurring a low average overhead of 1.2%.
CCS ’25, Taipei
</summary>
<dc:date>2025-11-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Study on LLMs for Promptagator-Style Dense Retriever Training</title>
<link href="https://hdl.handle.net/1721.1/164284" rel="alternate"/>
<author>
<name>Gwon, Daniel</name>
</author>
<author>
<name>Jedidi, Nour</name>
</author>
<author>
<name>Lin, Jimmy</name>
</author>
<id>https://hdl.handle.net/1721.1/164284</id>
<updated>2025-12-12T05:25:42Z</updated>
<published>2025-11-10T00:00:00Z</published>
<summary type="text">Study on LLMs for Promptagator-Style Dense Retriever Training
Gwon, Daniel; Jedidi, Nour; Lin, Jimmy
Promptagator demonstrated that Large Language Models (LLMs) with few-shot prompts can be used as task-specific query generators for fine-tuning domain-specialized dense retrieval models. However, the original Promptagator approach relied on proprietary and large-scale LLMs which users may not have access to or may be prohibited from using with sensitive data. In this work, we study the impact of open-source LLMs at accessible scales (≤14B parameters) as an alternative. Our results demonstrate that open-source LLMs as small as 3B parameters can serve as effective Promptagator-style query generators. We hope our work will inform practitioners with reliable alternatives for synthetic data generation and give insights to maximize fine-tuning results for domain-specific applications. Our code is available at https://www.github.com/mitll/promptodile
CIKM ’25, Seoul, Republic of Korea
</summary>
<dc:date>2025-11-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>One-Sided Bounded Noise: Theory, Optimization Algorithms and Applications</title>
<link href="https://hdl.handle.net/1721.1/164283" rel="alternate"/>
<author>
<name>Xiao, Hanshen</name>
</author>
<author>
<name>Wan, Jun</name>
</author>
<author>
<name>Shi, Elaine</name>
</author>
<author>
<name>Devadas, Srinivas</name>
</author>
<id>https://hdl.handle.net/1721.1/164283</id>
<updated>2025-12-12T05:25:34Z</updated>
<published>2025-11-22T00:00:00Z</published>
<summary type="text">One-Sided Bounded Noise: Theory, Optimization Algorithms and Applications
Xiao, Hanshen; Wan, Jun; Shi, Elaine; Devadas, Srinivas
We investigate the optimal trade-off between utility and privacy using one-sided perturbation. Unlike conventional privacy-preserving statistical releases, randomization for obfuscating side-channel information is often constrained by infrastructure limitations. In practical scenarios, these constraints may only allow positive and bounded perturbations. For example, extending processing time or sending and storing dummy messages/data is typically feasible. However, implementing modifications in the opposite direction is challenging due to restrictions imposed by hardware capacity, communication protocols, and data management systems. In this paper, we establish the foundation of the positive noise mechanism within three semantic privacy frameworks: Differential Privacy (DP), Maximal Leakage (MaxL), and Probably Approximately Correct (PAC) Privacy. We then present a series of results that characterize or approximate the optimal one-sided noise distribution, subject to a second-moment budget and a bounded maximal magnitude. Building on this theoretical foundation, we develop efficient tools to solve the underlying optimization problems. Through experiments conducted in various scenarios, we demonstrate that existing techniques, such as Truncated Biased Laplace noise, are often suboptimal and result in excessive performance degradation. For instance, in an anonymous communication system with a 250K message budget, our optimized DP noise mechanism achieves a 21× reduction in dummy messages and an 18× reduction in dummy message latency overhead compared to traditional methods.
CCS ’25, Taipei, Taiwan
</summary>
<dc:date>2025-11-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>TH-Wood: Developing Thermo-Hygro-Coordinating Driven Wood Actuators to Enhance Human-Nature Interaction</title>
<link href="https://hdl.handle.net/1721.1/164282" rel="alternate"/>
<author>
<name>Wang, Guanyun</name>
</author>
<author>
<name>Chen, Chuang</name>
</author>
<author>
<name>Jin, Xiao</name>
</author>
<author>
<name>Chen, Yulu</name>
</author>
<author>
<name>Zheng, Yangweizhe</name>
</author>
<author>
<name>Zhen, Qianzi</name>
</author>
<author>
<name>Zhang, Yang</name>
</author>
<author>
<name>Li, Jiaji</name>
</author>
<author>
<name>Yang, Yue</name>
</author>
<author>
<name>Tao, Ye</name>
</author>
<author>
<name>Luo, Shijian</name>
</author>
<author>
<name>Sun, Lingyun</name>
</author>
<id>https://hdl.handle.net/1721.1/164282</id>
<updated>2025-12-12T05:24:58Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">TH-Wood: Developing Thermo-Hygro-Coordinating Driven Wood Actuators to Enhance Human-Nature Interaction
Wang, Guanyun; Chen, Chuang; Jin, Xiao; Chen, Yulu; Zheng, Yangweizhe; Zhen, Qianzi; Zhang, Yang; Li, Jiaji; Yang, Yue; Tao, Ye; Luo, Shijian; Sun, Lingyun
Wood has become increasingly applied in shape-changing interfaces for its eco-friendly and smart responsive properties, while its applications face challenges as it remains primarily driven by humidity. We propose TH-Wood, a biodegradable actuator system composed of wood veneer and microbial polymers, driven by both temperature and humidity, and capable of functioning in complex outdoor environments. This dual-factor-driven approach enhances the sensing and response channels, allowing for more sophisticated coordinating control methods. To assist in designing and utilizing the system more effectively, we developed a structure library inspired by dynamic plant forms, conducted extensive technical evaluations, created an educational platform accessible to users, and provided a design tool for deformation adjustments and behavior previews. Finally, several ecological applications demonstrate the potential of TH-Wood to significantly enhance human interaction with natural environments and expand the boundaries of human-nature relationships.
CHI ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>From blades to tracks: a case study in structural reuse of curved surfaces for circular design</title>
<link href="https://hdl.handle.net/1721.1/164281" rel="alternate"/>
<author>
<name>Pupping, Jesse</name>
</author>
<author>
<name>Riso, Marzia</name>
</author>
<author>
<name>Popescu, Mariana</name>
</author>
<author>
<name>Bousseau, Adrien</name>
</author>
<author>
<name>Joustra, Jelle</name>
</author>
<id>https://hdl.handle.net/1721.1/164281</id>
<updated>2025-12-12T05:25:49Z</updated>
<published>2025-11-19T00:00:00Z</published>
<summary type="text">From blades to tracks: a case study in structural reuse of curved surfaces for circular design
Pupping, Jesse; Riso, Marzia; Popescu, Mariana; Bousseau, Adrien; Joustra, Jelle
We explore the fabrication of curved surfaces by reusing panels extracted from decommissioned wind turbine blades, using cycling pumptracks as a case study. We first present real-world prototypes of pumptrack modules that we manufactured to evaluate the practicality of this reuse scenario and to define the boundary conditions for harvesting blade panels and assembling a track. We then propose an algorithm to optimize the segmentation of a wind turbine blade into quadrilateral panels whose sides fall within a small set of compatible boundaries. These panels form a library of modules that designers can connect side by side to create pumptracks of various lengths and curvatures. Together, these contributions provide a proof-of-concept of how computer-aided design and manufacturing can support circular design through the reuse of curved surfaces.
</summary>
<dc:date>2025-11-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fintech Innovation in China</title>
<link href="https://hdl.handle.net/1721.1/164280" rel="alternate"/>
<author>
<name>Cusumano, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/164280</id>
<updated>2025-12-12T05:25:15Z</updated>
<published>2025-09-23T00:00:00Z</published>
<summary type="text">Fintech Innovation in China
Cusumano, Michael
This column discusses innovation in payment platforms in China and what Western central banks and governments might learn.  Private Chinese companies led in the introduction of the mobile payment systems Alipay and WeChat Pay, using QR codes, and most transactions in the country are now digital.  China also has banned private crypto currencies and stablecoins and introduced a public digital currency and payment system using crypto technology.  However, it has been very difficult to get users to switch to the new central bank digital currency, despite aggressive promotions, subsidies, and mandates.  China's experience suggests that other central banks around the world will have difficulty introducing their own digital currencies and competing with private stablecoins and cryptocurrencies as well as other private digital payment platforms.
</summary>
<dc:date>2025-09-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Stable Marriage Problem and Sudoku</title>
<link href="https://hdl.handle.net/1721.1/164279" rel="alternate"/>
<author>
<name>Borodin, Matvey</name>
</author>
<author>
<name>Chen, Eric</name>
</author>
<author>
<name>Duncan, Aidan</name>
</author>
<author>
<name>Khovanova, Tanya</name>
</author>
<author>
<name>Litchev, Boyan</name>
</author>
<author>
<name>Liu, Jiahe</name>
</author>
<author>
<name>Moroz, Veronika</name>
</author>
<author>
<name>Qian, Matthew</name>
</author>
<author>
<name>Raghavan, Rohith</name>
</author>
<author>
<name>Rastogi, Garima</name>
</author>
<author>
<name>Voigt, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/164279</id>
<updated>2025-12-11T03:12:42Z</updated>
<published>2024-08-07T00:00:00Z</published>
<summary type="text">The Stable Marriage Problem and Sudoku
Borodin, Matvey; Chen, Eric; Duncan, Aidan; Khovanova, Tanya; Litchev, Boyan; Liu, Jiahe; Moroz, Veronika; Qian, Matthew; Raghavan, Rohith; Rastogi, Garima; Voigt, Michael
Are you having trouble getting married? These days, there are lots of products on the market for dating, from apps to websites and matchmakers, but we know a simpler way! That’s right—your path to coupled life isn’t through Tinder; it’s through Sudoku! Read our fabulous paper, where we explore the Stable Marriage Problem to help you find happiness and stability in marriage through math. As a bonus, you get two Sudoku puzzles with a new flavor.
</summary>
<dc:date>2024-08-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>How Medical Technologies Materialize Oppression</title>
<link href="https://hdl.handle.net/1721.1/164278" rel="alternate"/>
<author>
<name>Boulicault, Marion</name>
</author>
<id>https://hdl.handle.net/1721.1/164278</id>
<updated>2025-12-11T03:12:52Z</updated>
<published>2023-04-03T00:00:00Z</published>
<summary type="text">How Medical Technologies Materialize Oppression
Boulicault, Marion
Biomedical practice can encode and perpetuate oppressive ideologies. This encoding and perpetuation, scholars like Liao and Carbonell (Citation2023) convincingly argue, can occur not only via social practices, but also through medical technologies themselves. In other words, medical technologies can “materialize oppression”: they can be biased in a way that systematically “reflects and perpetuates unjust power relations” (Liao and Carbonell Citation2023, 9).&#13;
&#13;
In this paper, I examine how medical technologies materialize oppression, offering a preliminary, non-exhaustive taxonomy of the mechanisms of this materialization. While scholars like Liao and Carbonell focus primarily on physical medical instruments, I offer new examples that illustrate these mechanisms at work, focusing on medical data classification technologies and infrastructures. A clearer view of how these mechanisms operate suggests possibilities for building technologies that liberate rather than oppress.
</summary>
<dc:date>2023-04-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wild Wood Gridshells: Mixed-Reality Construction of Nonstandard Wood</title>
<link href="https://hdl.handle.net/1721.1/164277" rel="alternate"/>
<author>
<name>Cousin, Tim</name>
</author>
<author>
<name>Alkhayat, Latifa</name>
</author>
<author>
<name>Pearl, Natalie</name>
</author>
<author>
<name>Dewart, Christopher B</name>
</author>
<author>
<name>Mueller, Caitlin</name>
</author>
<id>https://hdl.handle.net/1721.1/164277</id>
<updated>2025-12-11T03:12:47Z</updated>
<published>2023-07-03T00:00:00Z</published>
<summary type="text">Wild Wood Gridshells: Mixed-Reality Construction of Nonstandard Wood
Cousin, Tim; Alkhayat, Latifa; Pearl, Natalie; Dewart, Christopher B; Mueller, Caitlin
Irregular wood is often downcycled despite having significant embedded strength. Reintegrating this wood into structural assemblies can improve material efficiency in the built environment. This work implemented material logic in a design-to-fabrication workflow for building structures using bifurcated tree branches to leverage this potential (Figure 1). This process is demonstrated through the design and construction of a prototype. A user-oriented computational interface is proposed that manages irregular geometries, matching and optimization algorithms, and structural simulation for design iteration. The demonstrated workflow, which concludes with augmented reality (AR) assisted fabrication, facilitates designing with varying materials, enabling upcycling a wide range of nonstandard building elements. At scale, this methodology can significantly reduce the environmental impact of construction.
</summary>
<dc:date>2023-07-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>MiNav: Autonomous Drone Navigation Indoors using Millimeter-Waves</title>
<link href="https://hdl.handle.net/1721.1/164276" rel="alternate"/>
<author>
<name>Lam, Maisy</name>
</author>
<author>
<name>Herrera, Joshua</name>
</author>
<author>
<name>Afzal, Sayed Saad</name>
</author>
<author>
<name>Zhou, Kaichen</name>
</author>
<author>
<name>Adib, Fadel</name>
</author>
<id>https://hdl.handle.net/1721.1/164276</id>
<updated>2025-12-11T03:12:23Z</updated>
<published>2025-09-03T00:00:00Z</published>
<summary type="text">MiNav: Autonomous Drone Navigation Indoors using Millimeter-Waves
Lam, Maisy; Herrera, Joshua; Afzal, Sayed Saad; Zhou, Kaichen; Adib, Fadel
We present the design, implementation, and evaluation of MiNav, a system capable of accurate, efficient and fully autonomous&#13;
drone navigation in challenging indoor environments, including those where vision-based systems fail. MiNav builds on&#13;
recent literature in millimeter-wave (mmWave) backscatter localization and makes the leap to full end-to-end autonomous&#13;
mmWave-based navigation.&#13;
MiNav leverages a mmWave radar mounted on a drone and one or more mmWave backscatter tags deployed in the environment.&#13;
To enable autonomous navigation, our design introduces key innovations. First, MiNav derives a novel Joint DOP-SNR&#13;
formulation to probabilistically model uncertainty in localization, and uses this uncertainty to generate an RF-Navigation Map&#13;
that maximizes the accuracy and reliability of mmWave backscatter localization throughout an environment. It then applies a&#13;
RF-aware Autonomous Path Planning technique that jointly optimizes for navigation efficiency and localization performance.&#13;
We built an end-to-end real-time implementation of MiNav consisting of a custom built drone and mmWave backscatter&#13;
tags. We tested it in practical indoor environments. We run over 165 successful autonomous missions across different tag&#13;
deployments and demonstrate a median 3D navigation error of 9.1 cm. Our results also show that in comparison to baseline&#13;
implementations that rely on more classical uncertainty metrics, MiNav achieves a 20% increase in navigation reliability and&#13;
nearly 3x improvement in self-tracking in millimeter-wave backscatter localization. Finally, we demonstrate first of its kind&#13;
capabilities, such as fully autonomous, end-to-end mmWave-based drone navigation and path planning in featureless and dark&#13;
environments. Demo video: http://y2u.be/EpnWibRcxBI
</summary>
<dc:date>2025-09-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Civics Lesson for Corporations Seeking to Join a University Community of Innovation</title>
<link href="https://hdl.handle.net/1721.1/164275" rel="alternate"/>
<author>
<name>Wright, Randall S.</name>
</author>
<id>https://hdl.handle.net/1721.1/164275</id>
<updated>2025-12-11T03:12:51Z</updated>
<published>2023-10-30T00:00:00Z</published>
<summary type="text">A Civics Lesson for Corporations Seeking to Join a University Community of Innovation
Wright, Randall S.
Civics, according to Merriam-Webster(2023), is “a social science dealing withthe rights and duties of citizens.”We’ve reached an inflection point.The headline of the July 2023 edi-tion of University-Industry EngagementAdvisor (Lewis 2023) reads “Beforesigning off on strategic partnerships,experts stress value of solid due dili-gence process.”
</summary>
<dc:date>2023-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Artificial intelligence for telemedicine diabetic retinopathy screening: a review</title>
<link href="https://hdl.handle.net/1721.1/164274" rel="alternate"/>
<author>
<name>Nakayama, Luis Filipe</name>
</author>
<author>
<name>Zago Ribeiro, Lucas</name>
</author>
<author>
<name>Novaes, Frederico</name>
</author>
<author>
<name>Miyawaki, Isabele Ayumi</name>
</author>
<author>
<name>Miyawaki, Andresa Emy</name>
</author>
<author>
<name>de Oliveira, Juliana Angélica Estevão</name>
</author>
<author>
<name>Oliveira, Talita</name>
</author>
<author>
<name>Malerbi, Fernando Korn</name>
</author>
<author>
<name>Regatieri, Caio Vinicius Saito</name>
</author>
<author>
<name>Celi, Leo Anthony</name>
</author>
<author>
<name>Silva, Paolo S</name>
</author>
<id>https://hdl.handle.net/1721.1/164274</id>
<updated>2025-12-11T03:12:49Z</updated>
<published>2023-12-12T00:00:00Z</published>
<summary type="text">Artificial intelligence for telemedicine diabetic retinopathy screening: a review
Nakayama, Luis Filipe; Zago Ribeiro, Lucas; Novaes, Frederico; Miyawaki, Isabele Ayumi; Miyawaki, Andresa Emy; de Oliveira, Juliana Angélica Estevão; Oliveira, Talita; Malerbi, Fernando Korn; Regatieri, Caio Vinicius Saito; Celi, Leo Anthony; Silva, Paolo S
PURPOSE: This study aims to compare artificial intelligence (AI) systems applied in diabetic retinopathy (DR) teleophthalmology screening, currently deployed systems, fairness initiatives and the challenges for implementation.&#13;
METHODS: The review included articles retrieved from PubMed/Medline/EMBASE literature search strategy regarding telemedicine, DR and AI. The screening criteria included human articles in English, Portuguese or Spanish and related to telemedicine and AI for DR screening. The author's affiliations and the study's population income group were classified according to the World Bank Country and Lending Groups.&#13;
RESULTS: The literature search yielded a total of 132 articles, and nine were included after full-text assessment. The selected articles were published between 2004 and 2020 and were grouped as telemedicine systems, algorithms, economic analysis and image quality assessment. Four telemedicine systems that perform a quality assessment, image preprocessing and pathological screening were reviewed. A data and post-deployment bias assessment are not performed in any of the algorithms, and none of the studies evaluate the social impact implementations. There is a lack of representativeness in the reviewed articles, with most authors and target populations from high-income countries and no low-income country representation.&#13;
CONCLUSIONS: Telemedicine and AI hold great promise for augmenting decision-making in medical care, expanding patient access and enhancing cost-effectiveness. Economic studies and social science analysis are crucial to support the implementation of AI in teleophthalmology screening programs. Promoting fairness and generalizability in automated systems combined with telemedicine screening programs is not straightforward. Improving data representativeness, reducing biases and promoting equity in deployment and post-deployment studies are all critical steps in model development.
</summary>
<dc:date>2023-12-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Removal Chain &amp; Sentient Life Cycles</title>
<link href="https://hdl.handle.net/1721.1/164273" rel="alternate"/>
<author>
<name>Schrage, Leonard</name>
</author>
<author>
<name>Duarte, Fábio</name>
</author>
<author>
<name>Ratti, Carlo</name>
</author>
<id>https://hdl.handle.net/1721.1/164273</id>
<updated>2025-12-11T03:12:41Z</updated>
<published>2023-07-03T00:00:00Z</published>
<summary type="text">The Removal Chain &amp; Sentient Life Cycles
Schrage, Leonard; Duarte, Fábio; Ratti, Carlo
As our cities are growing, managing waste is becoming increasingly challenging. Global plastic waste is set to almost triple by 2060 (OECD Citation2020) while recycling rates are staying below expectations.&#13;
&#13;
At the same time, landfills are being relocated away from cities, reaching their maximum capacities, or forced to shut down due to contamination with hazardous materials. As waste management infrastructure is increasingly removed from urban areas, we are becoming further disconnected from its ubiquitous, indispensable, yet invisible life of its own.&#13;
&#13;
In recent years, supply chain issues have been an omnipresent reflection of our consumerist reality. For example, when the Ever Given—one of the largest container ships in the world—got stuck in the Suez Canal in 2021 (Chellel et al. Citation2021), we were reminded that our globalized goods travel a long way around the world before they arrive at our doorstep. Still, we tend to forget that there is a life after the supply. On a planet with finite resources and growing piles of (hazardous) trash, we need to look further than the obvious. We urgently need to embrace a circular economy to combat the climate crisis. And to do so, we need to mind both the supply and removal chains.
</summary>
<dc:date>2023-07-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>A two-level machine learning approach for predicting thermal striping in T-junctions with upstream elbow</title>
<link href="https://hdl.handle.net/1721.1/164272" rel="alternate"/>
<author>
<name>Wang, Yu-Jou</name>
</author>
<author>
<name>Baglietto, Emilio</name>
</author>
<author>
<name>Shirvan, Koroush</name>
</author>
<id>https://hdl.handle.net/1721.1/164272</id>
<updated>2025-12-11T03:12:54Z</updated>
<published>2024-06-02T00:00:00Z</published>
<summary type="text">A two-level machine learning approach for predicting thermal striping in T-junctions with upstream elbow
Wang, Yu-Jou; Baglietto, Emilio; Shirvan, Koroush
Thermal striping is a phenomenon characterized by oscillatory mixing of non-isothermal streams, which is commonly seen in industrial processes such as nuclear coolant piping, petrochemical plants and liquefied natural gas transportation. The oscillatory mixing of hot and cold fluid can produce thermal field fluctuations and pose a potential risk of high-cycle thermal fatigue failures. Predicting and evaluating spatiotemporal fluctuations in thermal striping often requires high resolution and massive computational power. Although there have been extensive studies using machine learning algorithms on surrogate modeling, research focused on spatiotemporal fluctuation predictions is very limited. Due to the high dimensionality, it often requires complex algorithms with a large amount of high-fidelity training data, which limits the adoption of such methods for industrial applications. In this research, a two-level machine learning framework based on turbulence coherent structures is proposed and its application to a practical problem is demonstrated. The two-level design leverages vortex identification and local bias correction techniques, efficiently reducing the number of full-order simulations required for training. In the first level, well-organized coherent structures are extracted by performing Proper Orthogonal Decomposition on local parameters and then a tree-based machine-learning model is used to down-select the reference structures for the field reconstruction. In the second level, a parameterized convolution neural network is trained to predict the bias introduced by reference structures approximation. The demonstration of the methodology shows that the method can accurately capture the fluctuation frequencies and amplitudes of the spatiotemporal fields in a highly variational setting. Based on the vortex identification method, the methodology is expected to be applicable to general phenomenon driven by large coherent structures.
</summary>
<dc:date>2024-06-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>IP Networks Over Heterogeneous Embedded Serial Links</title>
<link href="https://hdl.handle.net/1721.1/164271" rel="alternate"/>
<author>
<name>Perry, Nathan</name>
</author>
<id>https://hdl.handle.net/1721.1/164271</id>
<updated>2025-12-11T03:08:19Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">IP Networks Over Heterogeneous Embedded Serial Links
Perry, Nathan
The Internet Protocol (IP) provides a number of key benefits to networked devices: it serves as a "narrow waist" enabling functional modularity by decoupling lower-layer devices from application behavior, it provides a notion of transitive connectivity and a number of standardized methods to achieve it, and most importantly, it is ubiquitous, enabling almost all networked applications to mutually communicate.&#13;
&#13;
Many embedded microcontrollers cannot take advantage of the benefits of IP because they lack the dedicated networking hardware which is as a practical matter required to interact with nontrivial networks. I observe that multihop point-to-point IP networks can in principle be constructed over the communication media that microcontrollers commonly do have, such as UARTs, I2C, SPI, and CAN bus, but software support is lacking to make this networking approach accessible.&#13;
&#13;
Therefore, this thesis develops and evaluates interstice, a platform-independent, open-source software library designed to enable the flexible implementation of modular packet forwarders in userspace. It can be used to interconnect devices and their IP stacks across a variety of conventional&#13;
and unconventional links. Interstice exposes a reprogrammable, dynamically-updatable packet-forwarding strategy, enabling forwarder nodes in principle to act as hubs, bridges, full routers, or implement firewalls or NAT, as application requirements and platform constraints permit.&#13;
&#13;
This approach enables benefits for modular, networked systems of microcontrollers which need to talk to the outside world: using IP enables internal microcontrollers to communicate with external devices such as PCs and smartphones without the need for application gateways. Further, to the extent that such networks are runtime-reconfigurable, features of IP such as address assignment, dynamic routing, and link-agnosticity can be incredibly beneficial.&#13;
&#13;
Interstice is evaluated here primarily against networks of various types of serial links (UART, I2c, CAN) speaking PPP, selected to demonstrate utility of the approach to connect embedded devices lacking dedicated networking peripherals, and further that link drivers can be specialized to take advantage of the specific characteristics of each link. The approach is showcased in application scenarios including a networked milling machine, and is analyzed for a number of performance metrics.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>BioLIG: Designing Biologically Derived Electronics and Their Speculative Lives</title>
<link href="https://hdl.handle.net/1721.1/164270" rel="alternate"/>
<author>
<name>Li, Yuqing Lucy</name>
</author>
<id>https://hdl.handle.net/1721.1/164270</id>
<updated>2025-12-11T03:08:22Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">BioLIG: Designing Biologically Derived Electronics and Their Speculative Lives
Li, Yuqing Lucy
Imagination is the origin of reality. Cultivating new infrastructural and ecological imaginaries is crucial to addressing the climate crisis. Where is the space to prototype new social and technological relations? Transient electronics is an emerging field in advanced materials focused on making electronics that don’t last. Devices are designed to be transient for biomedical, environmental monitoring, or energy storage applications. It is a fascinating and unconventional direction that advances the area of biocompatibility, redefining waste and time-programmable decay {Making electronics that, 2022}. However, in a manufacturing system that fundamentally favors the inert and invariant, transient properties can be precisely the qualities that make adaptation most challenging, often failing at the very stage of imagination. Taking inspiration from transient electronics, this thesis consists of a set of novel biomaterials, a workflow, and three fictional stories to enrich our imagination and instill agency amidst entangled humanitarian, ecological, and technological crises. BioLIG is a material for prototyping accessible and compostable electronics. It uses laser-induced graphene as an organic, bio-derived conductor and affordable biomaterials as the substrate. Three sheets and two inks make up a toolkit to create biocomposites with different properties, colors, and textures specifically designed for prototyping sensors and circuits with transient behaviours. Through a series of characterisations, BioLIG is evaluated and demonstrates that with one material, its electrical performance is on par with synthetic substrates. However, the goal is not to create a replacement material but to prototype new social and technological relations to transient materials. Through a questionnaire, I collected stories, ideas, and questions from makers, designers, and artists for BioLIG and used those as the basis for imagination. In a speculative house, on three floors, three stories unfold of a hoarder, a city forester, and a family living in a time with a leap in our relationship to fabrication, to electronics, and to decay.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Being. Creative. Together. Designing Technologies That Center Human Connection, Co-creativity, and Calm in the Era of AI</title>
<link href="https://hdl.handle.net/1721.1/164269" rel="alternate"/>
<author>
<name>Dhariwal, Manuj</name>
</author>
<id>https://hdl.handle.net/1721.1/164269</id>
<updated>2025-12-11T03:06:17Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Being. Creative. Together. Designing Technologies That Center Human Connection, Co-creativity, and Calm in the Era of AI
Dhariwal, Manuj
As Artificial Intelligence (AI) becomes increasingly interwoven into our creative, social, and learning experiences, we must ask: Will these technologies deepen our connection to the timeless human experiences of Being, Being Together, and Being Creative Together—or will they pull us apart, leaving us more anxious and isolated? In an era where AI systems are increasingly framed as our “co-creators” and “companions,” enabling hyper-personalized yet hyper-isolated interactions, this dissertation reclaims the prefix ‘co-’ as fundamentally interhuman—introducing a set of new paradigms that center human connection, co-creativity, and calm in the design of technologies.&#13;
&#13;
Central to this work, we’ve developed CoCo (coco.build), a general-purpose, real-time co-creative learning platform that empowers young people to engage in a wide variety of safe, shared creative experiences with their peers—spanning creative computing, AI education, digital art, writing, and more. Through the platform, we showcase how digital environments can move beyond isolated modes of learning and creating to support multiple ways of being creative together with others—introducing a new paradigm for real-time digital collaboration. We further illuminate how CoCo has been envisioned as a “self-less” social platform that de-emphasizes comparison-based, self-centric metrics (profiles, likes, followers) prevalent in most online systems for young people. &#13;
&#13;
We weave these interconnected ideas into the unifying theme of “Being. Creative. Together.”— values we believe are both timeless and especially timely in the AI era. We supplement the broader design, technical, practical, and pedagogical contributions of this work by sharing insights and feedback from pilots with over 2,000 young people and educators across diverse settings. Ultimately, we see this dissertation as both a contribution and a call—to preserve the human essence of co-, to distinguish it from the useful, powerful, but instrumental AI interactions, and to shape digital environments that nurture our capacity to co-imagine, co-create, co-learn, co-exist, and co-evolve—with and through one another.&#13;
&#13;
Note: This work has been co-developed with Shruti Dhariwal. See https://coco.build/thesis for suggested citation and updates on this work.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Toward the computational transformation of legal theory and practice</title>
<link href="https://hdl.handle.net/1721.1/164268" rel="alternate"/>
<author>
<name>Mahari, Robert</name>
</author>
<id>https://hdl.handle.net/1721.1/164268</id>
<updated>2025-12-11T03:05:54Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Toward the computational transformation of legal theory and practice
Mahari, Robert
This doctoral thesis seeks to advance the formalization of computational law as a distinct research discipline. It explores three interwoven key themes: the empirical understanding of legal systems through advanced computational methods; the development of computational tools to augment the capabilities of legal practitioners, thereby expanding access to justice; and the identification of novel, computationally-enabled regulatory interventions. This research directly confronts the global access to justice crisis and the shortcomings of conventional legal services that frequently leave businesses and individuals without adequate support. Furthermore, the thesis investigates innovative regulatory strategies for emerging technologies, aiming to synchronize legal frameworks with contemporary technological progress by exploring adaptive and forward-looking governance approaches.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modular Development Platforms and Creative Ecosystems: Design &amp; Deployment for Wide Impact Across Fields</title>
<link href="https://hdl.handle.net/1721.1/164267" rel="alternate"/>
<author>
<name>Shtarbanov, Ali</name>
</author>
<id>https://hdl.handle.net/1721.1/164267</id>
<updated>2025-12-11T03:06:21Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Modular Development Platforms and Creative Ecosystems: Design &amp; Deployment for Wide Impact Across Fields
Shtarbanov, Ali
Physical, digital, and conceptual tools and building blocks are fundamental enablers and accelerators of humanity’s progress in technology, science, medicine, art, and even in abstract fields like mathematics, philosophy, and social sciences. Hardware development platforms present a special class of tools and building blocks, facilitating and accelerating innovation, prototyping, and research. They drastically reduce prototyping time and complexity, improve efficiency for experts, democratize access to innovation, and even inspire entirely new ideas. This research investigates how to design, develop, and deploy development platforms in ways that maximize their real-world impact potential. It focuses not only on the technical and engineering aspects, but also on the complete ecosystem a platform needs in order to have impact, including community building, engagement with users and volunteers, content strategy, online presence, publicity, deployment, feedback loops modularity, financial viability, and symbiotic relationships.  A comprehensive Design &amp; Deployment Framework is introduced as a conceptual tool for creating high-impact platforms and creative ecosystems, recognizing and fostering the positive feedback loops that sustain them and that shape their evolution and growth. This framework is applied in the development and deployment of multiple novel platform and ecosystem projects, including FlowIO, SleeveIO, and ModiStrap, as well as the ecosystem SoftRobotics.IO. Those works have benefited thousands of people around the world, providing researchers, designers, and engineers with powerful, reconfigurable, modular enabling artifacts that streamline prototyping, accelerate research, and lower barriers in fields like soft robotics, haptics, assistive technology, shape-changing interfaces, interactive arts, and more. A multitude of research, art, and engineering projects made possible by FlowIO and SoftRobotics.IO are presented, as well as over a dozen case studies showcasing how other users across disciplines have adopted, utilized, and extended these systems to advance their own creative, educational, and technical endeavors. Additionally, this thesis also investigates various deployment models for hardware and introduces a new hardware deployment model for equitable access to expensive hardware that may otherwise be financially out of reach for many users, as well as an “earned open-source” model, which preserves the essence of the traditional open-source model, while eliminating many of its pitfalls.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Advancing Biosecurity in the Age of AI: Integrating Novel Detection, Suppression, and Evaluation Approaches</title>
<link href="https://hdl.handle.net/1721.1/164266" rel="alternate"/>
<author>
<name>Justen, Lennart J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164266</id>
<updated>2025-12-11T03:08:21Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Advancing Biosecurity in the Age of AI: Integrating Novel Detection, Suppression, and Evaluation Approaches
Justen, Lennart J.
Civilization confronts a growing challenge: advancing transformative biological science while safeguarding against catastrophic misuse, a tension amplified by the rapid convergence between biology and artificial intelligence. The COVID-19 pandemic starkly revealed our vulnerabilities to self-replicating, exponential biological phenomena, yet current defenses remain dangerously inadequate—often blind to novel pathogens until too late and lacking barriers against rapid airborne transmission. This thesis argues that robust biosecurity enables, rather than hinders, progress, and advances three key defensive capabilities. First, it evaluates blood metagenomics for pathogen-agnostic surveillance, reanalyzing public datasets to quantify viral signatures and guide the implementation of much-needed early-warning systems sensitive to novel pathogens. Second, it advances far-UVC, a type of ultraviolet between 200-235 nm, for continuous indoor air disinfection, critically assessing its safety profile through an international expert review and establishing research priorities essential for deploying this vital physical defense against airborne threats. Third, it develops rigorous methodologies for evaluating AI's rapidly evolving biological capabilities, benchmarking frontier models across diverse tasks to track progress, reveal limitations in current assessments, and guide responsible innovation in this powerful dual-use technology. Collectively, these contributions help accelerate technologies to mitigate biological risks, thereby helping secure the conditions for continued, beneficial advancement of biology in the age of AI.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>From Dialogue to Decision: An LLM-Powered Framework for Analyzing Collective Idea Evolution and Voting Dynamics in Deliberative Assemblies</title>
<link href="https://hdl.handle.net/1721.1/164265" rel="alternate"/>
<author>
<name>Poole-Dayan, Elinor</name>
</author>
<id>https://hdl.handle.net/1721.1/164265</id>
<updated>2025-12-11T03:08:17Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">From Dialogue to Decision: An LLM-Powered Framework for Analyzing Collective Idea Evolution and Voting Dynamics in Deliberative Assemblies
Poole-Dayan, Elinor
Deliberative assemblies—representative samples of citizens engaged in collective decision-making through facilitated learning and deliberation—are increasingly recognized as powerful tools for revitalizing democratic governance. Yet, core aspects of how deliberation shapes which ideas advance, how perspectives evolve, and why certain recommendations succeed remain opaque and underexamined. This thesis addresses these gaps by investigating: (1) How might we trace the evolution and distillation of ideas into concrete recommendations within deliberative assemblies? and (2) How does the deliberative process shape delegate perspectives and influence voting dynamics over the course of the assembly?&#13;
&#13;
&#13;
To answer these questions, I develop LLM-based methodologies for empirically analyzing transcripts from a tech-enhanced student deliberative assembly. The first framework identifies and visualizes the space of expressed suggestions, revealing that seemingly large gaps between ideas and final recommendations often reflect productive deliberative filtering—while also surfacing overlooked viable ideas.&#13;
A second analysis integrates post-assembly survey data with transcript-grounded voting patterns to uncover the primary drivers of vote change: edits to recommendations, evolving opinions, and strategic shifts in response to updated priorities. Building on this, I introduce a framework for reconstructing each delegate’s evolving stance across the assembly, linking shifts in perspective to specific deliberative moments and justifications.&#13;
&#13;
Together, these methods contribute novel empirical insight into deliberative processes and demonstrate how LLMs can surface high-resolution dynamics otherwise invisible in traditional assembly outputs. The findings lay groundwork for new tools that support facilitators and delegates during live assemblies, improve transparency for decision-makers, and elevate ideas that may otherwise be missed.&#13;
&#13;
Looking ahead, this work opens pathways for comparative research across assemblies and highlights the potential for human-centered AI to meaningfully enhance deliberative democratic practice. As societies seek new modes of participatory governance amid growing polarization and institutional mistrust, tools that strengthen deliberation without compromising its core human character are urgently needed.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Private, Verifiable, and Auditable AI Systems</title>
<link href="https://hdl.handle.net/1721.1/164264" rel="alternate"/>
<author>
<name>South, Tobin</name>
</author>
<id>https://hdl.handle.net/1721.1/164264</id>
<updated>2025-12-11T03:06:13Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Private, Verifiable, and Auditable AI Systems
South, Tobin
The growing societal reliance on artificial intelligence necessitates robust frameworks for ensuring its security, accountability, and trustworthiness. This thesis addresses the complex interplay between privacy, verifiability, and auditability in modern AI, particularly in foundation models. It argues that technical solutions that integrate these elements are critical for responsible AI innovation. Drawing from international policy contributions and technical research to identify key risks in the AI pipeline, this work introduces novel technical solutions for critical privacy and verifiability challenges.  Specifically, the research introduces techniques for enabling verifiable and auditable claims about AI systems using zero-knowledge cryptography; utilizing secure multi-party computation and trusted execution environments for auditable, confidential deployment of large language models and information retrieval; and implementing enhanced delegation mechanisms, credentialing systems, and access controls to secure interactions with autonomous and multi-agent AI systems. Synthesizing these technical advancements, this dissertation presents a cohesive perspective on balancing privacy, verifiability, and auditability in foundation model-based AI systems, offering practical blueprints for system designers and informing policy discussions on AI safety and governance.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Language Models as Mirrors and Bridges for Intergroup Communication</title>
<link href="https://hdl.handle.net/1721.1/164263" rel="alternate"/>
<author>
<name>Jiang, Hang</name>
</author>
<id>https://hdl.handle.net/1721.1/164263</id>
<updated>2025-12-11T03:06:08Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Language Models as Mirrors and Bridges for Intergroup Communication
Jiang, Hang
This dissertation explores how large language models (LLMs) can serve dual roles in intergroup communication: as mirrors that reflect intergroup differences, and as bridges that facilitate communication across group boundaries. Intergroup communication refers to interactions between individuals from different social groups, such as political, cultural, or professional communities, where divergent perspectives often lead to misunderstandings, unequal access to information, and social fragmentation.&#13;
&#13;
The first part of the dissertation presents LLMs as mirrors that reveal intergroup differences. We first introduce CommunityLM, a novel framework for probing public opinion by fine-tuning LLMs on social media posts from specific communities. Our case study comparing Republican and Democratic groups reveals that model predictions align well with human survey responses, substantially outperforming established baselines. Building on this foundation, we develop PersonaLLM to investigate whether prompt-based LLM agents can generate content aligned with assigned personas, which has emerged as a popular approach for modeling the behaviors of social groups. Through automated and human evaluations, we demonstrate that these agents can complete personality tests and write stories that reflect the distinctive behavioral patterns of specific personality profiles. Together, these complementary projects illustrate how LLMs can effectively capture and simulate the unique perspectives and behaviors that characterize diverse social groups.&#13;
&#13;
The second part of the dissertation presents LLMs as bridges that facilitate communication across group boundaries. First, we introduce Bridging Dictionary, an interactive tool that uses retrieval-augmented generation (RAG) techniques with LLMs to identify polarized language and suggest more inclusive alternatives. In collaboration with PBS Frontline, we demonstrate the potential of LLMs to reduce misunderstanding in journalism and political communication. Second, we present Legal Storytelling, a human-LLM collaboration framework that generates accessible narratives to explain complex legal concepts to non-experts. Through randomized controlled trials (RCTs), we find that LLM-generated narratives can improve legal literacy and help bridge communication gaps between experts and laypeople, particularly among non-native English speakers. Third, we develop FaciliTrain, a voice-based, LLM-powered system that enables facilitators to learn and practice intergroup dialogue skills with multiple LLM agents representing diverse social backgrounds and personas in a small-group setting. User studies with campus participants show encouraging early results, suggesting that LLMs can effectively support the development of communication skills essential for constructive intergroup dialogue. Together, these projects illustrate how LLMs can actively foster mutual understanding across social divides by promoting more inclusive, accessible, and constructive communication.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Delibrary: From Discussion to Outcomes and Back(casted) Again, a Visualization Tool for Deliberative Assemblies</title>
<link href="https://hdl.handle.net/1721.1/164262" rel="alternate"/>
<author>
<name>Wong, Wing Cheung Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/164262</id>
<updated>2025-12-11T03:08:14Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Delibrary: From Discussion to Outcomes and Back(casted) Again, a Visualization Tool for Deliberative Assemblies
Wong, Wing Cheung Michael
With trust in traditional democratic institutions waning, it is increasingly important to examine how potential new institutions could be created and bolstered, with particular emphasis on restoring trust and empowering the public. One potential solution, the citizen's or deliberative assembly, can serve to bridge the governance and legitimacy gap between real-world policy decision-making processes and citizen-driven impact by leveraging random sortition and a well-designed deliberation process. In this thesis, I explore how AI-driven sensemaking via GPT4o-mini--a Large-Language Model (LLM)--synthesized with custom-built visualization tools, can potentially reveal the dynamics within citizen deliberative assemblies where representative, randomly selected citizens navigate public interest issues through facilitated deliberation--and how such tools can serve to amplify transparency within both the assembly process itself and the issues they explore. Through building three different prototype visualization frameworks and the development of an AI-powered topic identification process called backcasting, I analyze novel datasets from two tech-enhanced assemblies; fully recorded discussions from both an on-the-ground citizens' assembly in Deschutes County, Oregon, as well as an MIT student assembly on sustainability. In backcasting, assembly outcomes are linked to transcriptions of assembly discussions via LLM tagging, uncovering what, when, who, and where participants deliberate about topics that eventually become proposals/recommendations/outcomes. Furthermore, I analyze the sentiment with which an assembly delegate presented their view on a certain recommendation (agreement, disagreement, etc.) in addition to the supporting reasoning patterns this delegate used to express their view, if any (e.g. whether they draw from personal experience, reference outside expertise, etc.). To evaluate the final prototype tool, I interview subject matter and assembly experts, assembly organizers/facilitators, as well as assembly delegate members to assess the potential and drawbacks of this visualization tool and AI sensemaking backbone. Positive feedback obtained from these user studies include the clear potential for research, narrative building, and facilitation improvement, in addition to greater perceived transparency into the workings of an assembly process. Further work is still needed, however, to address significant lingering issues, such as adjusting presentation to better serve specific use cases and to reduce complexity and confusion, the most referenced drawback of Delibrary. Overall, my thesis aims to \textbf{build transparent insights into the human-led structures of assemblies, enabling relevant stakeholders--from delegates, policy makers, to the general public--to achieve a better understanding of the assembly process and engender legitimacy perception by illustrating that delegates drawn from all walks of life do have meaningful voice in an impactful process}. By helping to promote this understanding and perception of legitimacy of an effective and respectful deliberation process, I strive to ultimately help scaffold healthier democratic decision-making.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Facilitating Creative Learning: Engaging in a Practice of Care</title>
<link href="https://hdl.handle.net/1721.1/164261" rel="alternate"/>
<author>
<name>Presicce, Carmelo</name>
</author>
<id>https://hdl.handle.net/1721.1/164261</id>
<updated>2025-12-11T03:06:15Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Facilitating Creative Learning: Engaging in a Practice of Care
Presicce, Carmelo
Creative learning is shaped not only by tools and activities, but by relationships. This dissertation explores facilitation in creative learning environments as a relational practice centered on care—not as a set of techniques, but as a deeply human way of being with others, a commitment to creating spaces where people feel supported enough to explore, connected enough to share, and valued enough to express themselves. Grounded in constructionist, socioconstructivist, and humanistic pedagogies, the research draws from my multi-year engagement with Learning Creative Learning (LCL)—an online course and global community for educators—and WeScratch, a series of hands-on, collaborative online workshops introducing educators to creative coding. Through qualitative analysis of small-group facilitation during WeScratch workshops, I explore how volunteer facilitators experience and reflect on their practice. Drawing from three case studies, I examine how care takes shape in the situated, relational work of creative learning facilitation. In particular, I identify three interrelated forms of care: epistemic care, which focuses on what and how people learn; affirming care, which supports what learners value and who they are; and convivial care, which attends to how learners feel and relate to one another in a group. After introducing these three forms of care through the work of individual facilitators, I show how epistemic, affirming, and convivial care are deeply interwoven in practice—at times reinforcing one another, at times pulling in different directions. Facilitators must navigate these tensions in the moment, making situated judgments about when to step in, when to hold back, and how to respond to the evolving needs of individuals and groups. By centering care, this research highlights facilitation as deeply human, relational work that sustains the conditions for creative learning, contributing to the broader and evolving discourse on constructionism. It also makes the case for seeing facilitation as an ethical and political practice. In a time when educational discourse is increasingly shaped by ideals of efficiency and optimization—and the world faces rising authoritarianism and dehumanization—choosing to care is not only pedagogically meaningful, but also politically urgent.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Novel Earth Abundant Catalytic Materials for Abatement of Atmospheric Methane Sources, and Evaluation of Agricultural Deployment Environments</title>
<link href="https://hdl.handle.net/1721.1/164260" rel="alternate"/>
<author>
<name>Brenneis, Rebecca J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164260</id>
<updated>2025-12-11T03:06:10Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">Novel Earth Abundant Catalytic Materials for Abatement of Atmospheric Methane Sources, and Evaluation of Agricultural Deployment Environments
Brenneis, Rebecca J.
Annual global average temperatures in the past year have already exceeded the international target limit of 1.5°C, and the window to prevent that rise from extending is rapidly closing. The high global warming potential (GWP) and short atmospheric residence time (half-life of around 12 years) of methane make it a critical target for action to slow the pace of climate change in this decade. Yet technological solutions for methane abatement are challenged by methane’s inertness, dilute atmospheric concentrations, and diffuse, variable emissions sources. In this thesis, I propose the use of a bio-inspired, earth-abundant, heterogeneous catalysts as a novel tool for atmospheric and emissions-based methane abatement. Copper zeolites were characterized for their ability to convert low levels of methane, continuously, at low temperatures, for moderate durations, and in the presence of a variety of gaseous mixture influents, designed to mimic atmospheric air at standard temperatures and pressures. Catalytic performance was tested under conditions designed to mimic those found at two of the primary sources of low-level, anthropogenic emissions: ventilation air methane (VAM) and industrial dairy. Laboratory synthesized catalysts were shown to completely oxidize methane at concentrations ranging from atmospheric to 1%, covering the range of subflarable levels. Conversion was demonstrated at temperature as low a 270°C, with complete conversion achievable as low as 350°C, in the presence of 20% oxygen. While the presence of water vapor, nitric oxide, and hydrogen sulfide were shown to partially reduce catalytic efficiency, conversion efficiency was restored with increased temperature. The presence of carbon dioxide, alkanes, ammonia and hydrogen, at industrially relevant concentrations, had no effect on catalytic performance. Finally, atmospheric samples were collected at six industrial scale dairy barns across the Midwest and compared with the simulated laboratory conditions. Dairy samples fell within the ranges tested at the bench scale showing no evidence of any impediment to copper zeolite as a potential abatement tool. Methane concentrations at dairies were shown to be on the order of atmospheric to low 10s of ppmv making copper zeolites the only currently identified abatement strategy to address methane emissions at these locations. While it remains to be shown that these zeolites can provide net greenhouse gas benefit in the conditions required, copper zeolites are a strong option on a short list of technologies to address methane at any subflarable concentration, sources of which comprise 80% of global emissions sources, showing great promise as a climate technology breakthrough.
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>To Co- Is Human: Designing Technologies That Center Human Connection, Co-creativity, and Calm in the Era of AI</title>
<link href="https://hdl.handle.net/1721.1/164259" rel="alternate"/>
<author>
<name>Dhariwal, Shruti</name>
</author>
<id>https://hdl.handle.net/1721.1/164259</id>
<updated>2025-12-11T03:06:06Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">To Co- Is Human: Designing Technologies That Center Human Connection, Co-creativity, and Calm in the Era of AI
Dhariwal, Shruti
In an era where Artificial Intelligence (AI) systems are increasingly framed as our “companions” and “co-creators,” this dissertation reclaims “co-” as a fundamental marker of shared human experience—using it as a foundation to reimagine and build technologies that consciously center interhuman connection and co-creativity. Central to this work, we’ve developed CoCo (coco.build)—a general-purpose, real-time co-creative learning platform that empowers young people to engage in a wide variety of safe, shared creative experiences with their peers, spanning creative computing, AI education, digital art, writing, and more. Through the platform, we showcase how digital environments can move beyond isolated modes of learning and creating to support multiple ways of being creative together with others—introducing a new paradigm for real-time digital collaboration. We further illuminate how CoCo has been envisioned as a “self-less” social platform that de-emphasizes comparison-based, self-centric metrics (profiles, likes, followers) prevalent in most online systems for youth. We anchor these interconnected ideas in a unifying theme of “Being. Creative. Together.”—reflecting timeless values that have become especially timely in an era when AI tools can further accentuate individualized digital experiences for young people. We supplement the broader design, technical, practical, and pedagogical contributions of this work by sharing insights and feedback from pilots with over 2,000 young people and educators across diverse settings. Ultimately, we see this dissertation as both a contribution and a call—to preserve the human essence of co-, to distinguish it from the useful, powerful, but instrumental AI interactions, and to shape digital environments that nurture young people’s capacity to co-imagine, co-create, co-learn, co-exist, and co-evolve—with and through one another. &#13;
&#13;
Note: This work has been co-developed with Manuj Dhariwal. See https://coco.build/thesis for suggested citation and updates on this work.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Dual-Branch Coupled Fourier Neural Operator for High-Resolution Multi-Phase Flow Modeling in Porous Media</title>
<link href="https://hdl.handle.net/1721.1/164258" rel="alternate"/>
<author>
<name>Al Hashim, Hassan</name>
</author>
<author>
<name>Elyas, Odai</name>
</author>
<author>
<name>Williams, John</name>
</author>
<id>https://hdl.handle.net/1721.1/164258</id>
<updated>2025-12-11T03:12:56Z</updated>
<published>2025-11-22T00:00:00Z</published>
<summary type="text">A Dual-Branch Coupled Fourier Neural Operator for High-Resolution Multi-Phase Flow Modeling in Porous Media
Al Hashim, Hassan; Elyas, Odai; Williams, John
This paper investigates a physics-informed surrogate modeling framework for multi-phase flow in porous media based on the Fourier Neural Operator. Traditional numerical simulators, though accurate, suffer from severe computational bottlenecks due to fine-grid discretizations and the iterative solution of highly nonlinear partial differential equations. By parameterizing the kernel integral directly in Fourier space, the operator provides a discretization-invariant mapping between function spaces, enabling efficient spectral convolutions. We introduce a Dual-Branch Adaptive Fourier Neural Operator with a shared Fourier encoder and two decoders: a saturation branch that uses an inverse Fourier transform followed by a multilayer perceptron and a pressure branch that uses a convolutional decoder. Temporal information is injected via Time2Vec embeddings and a causal temporal transformer, conditioning each forward pass on step index and time step to maintain consistent dynamics across horizons. Physics-informed losses couple data fidelity with residuals from mass conservation and Darcy pressure, enforcing the governing constraints in Fourier space; truncated spectral kernels promote generalization across meshes without retraining. On SPE10-style heterogeneities, the model shifts the infinity-norm error mass into the 10−2 to 10−1 band during early transients and sustains lower errors during pseudo-steady state. In zero-shot three-dimensional coarse-to-fine upscaling from 30 ×110 ×5 to 60 ×220 ×5, it attains &#119877;2 =0.90, RMSE = 4.4 ×10−2, and MAE = 3.2 ×10−2, with more than 90% of voxels below five percent absolute error across five unseen layers, while the end-to-end pipeline runs about three times faster than a full-order fine-grid solve and preserves water-flood fronts and channel connectivity. Benchmarking against established baselines indicates a scalable, high-fidelity alternative for high-resolution multi-phase flow simulation in porous media.
</summary>
<dc:date>2025-11-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Unveiling IPv6 Scanning Dynamics: A Longitudinal Study Using Large Scale Proactive and Passive IPv6 Telescopes</title>
<link href="https://hdl.handle.net/1721.1/164257" rel="alternate"/>
<author>
<name>Tanveer, Hammas Bin</name>
</author>
<author>
<name>Chan, Echo</name>
</author>
<author>
<name>Mok, Ricky K. P.</name>
</author>
<author>
<name>Kappes, Sebastian</name>
</author>
<author>
<name>Richter, Philipp</name>
</author>
<author>
<name>Gasser, Oliver</name>
</author>
<author>
<name>Ronan, John</name>
</author>
<author>
<name>Berger, Arthur</name>
</author>
<author>
<name>Claffy, kc</name>
</author>
<id>https://hdl.handle.net/1721.1/164257</id>
<updated>2025-12-10T06:57:25Z</updated>
<published>2025-09-04T00:00:00Z</published>
<summary type="text">Unveiling IPv6 Scanning Dynamics: A Longitudinal Study Using Large Scale Proactive and Passive IPv6 Telescopes
Tanveer, Hammas Bin; Chan, Echo; Mok, Ricky K. P.; Kappes, Sebastian; Richter, Philipp; Gasser, Oliver; Ronan, John; Berger, Arthur; Claffy, kc
We introduce new tools and vantage points to develop and integrate proactive techniques to attract IPv6 scan traffic, thus enabling its analysis. By deploying the largest-ever IPv6 proactive telescope in a production ISP network, we collected over 600M packets of unsolicited traffic from 1.9k Autonomous Systems in 10 months. We characterized the sources of unsolicited traffic, evaluated the effectiveness of five major features across the network stack, and inferred scanners' sources of target addresses and their strategies.
</summary>
<dc:date>2025-09-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>HARMONY: A Scalable Distributed Vector Database for High-Throughput Approximate Nearest Neighbor Search</title>
<link href="https://hdl.handle.net/1721.1/164256" rel="alternate"/>
<author>
<name>Xu, Qian</name>
</author>
<author>
<name>Zhang, Feng</name>
</author>
<author>
<name>Li, Chengxi</name>
</author>
<author>
<name>Cao, Lei</name>
</author>
<author>
<name>Chen, Zheng</name>
</author>
<author>
<name>Zhai, Jidong</name>
</author>
<author>
<name>Du, Xiaoyong</name>
</author>
<id>https://hdl.handle.net/1721.1/164256</id>
<updated>2025-12-10T06:57:53Z</updated>
<published>2025-09-23T00:00:00Z</published>
<summary type="text">HARMONY: A Scalable Distributed Vector Database for High-Throughput Approximate Nearest Neighbor Search
Xu, Qian; Zhang, Feng; Li, Chengxi; Cao, Lei; Chen, Zheng; Zhai, Jidong; Du, Xiaoyong
Approximate Nearest Neighbor Search (ANNS) is essential for various data-intensive applications, including recommendation systems, image retrieval, and machine learning. Scaling ANNS to handle billions of high-dimensional vectors on a single machine presents significant challenges in memory capacity and processing efficiency. To address these challenges, distributed vector databases leverage multiple nodes for the parallel storage and processing of vectors. However, existing solutions often suffer from load imbalance and high communication overhead, primarily due to traditional partition strategies that fail to effectively distribute the workload. In this paper, we introduce Harmony, a distributed ANNS system that employs a novel multi-granularity partition strategy, combining dimension-based and vector-based partition. This strategy ensures a balanced distribution of computational load across all nodes while effectively minimizing communication costs. Furthermore, Harmony incorporates an early-stop pruning mechanism that leverages the monotonicity of distance computations in dimensionbased partition, resulting in significant reductions in both computational and communication overhead. We conducted extensive experiments on diverse real-world datasets, demonstrating that Harmony outperforms leading distributed vector databases, achieving 4.63&amp;#215; throughput on average in four nodes and 58% performance improvement over traditional distribution for skewed workloads.
</summary>
<dc:date>2025-09-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Kernel Extension DSLs Should Be Verifier-Safe!</title>
<link href="https://hdl.handle.net/1721.1/164255" rel="alternate"/>
<author>
<name>Solleza, Franco</name>
</author>
<author>
<name>Adam, Justus</name>
</author>
<author>
<name>Crotty, Andrew</name>
</author>
<author>
<name>Narayan, Akshay</name>
</author>
<author>
<name>Schwarzkopf, Malte</name>
</author>
<author>
<name>Tatbul, Nesime</name>
</author>
<id>https://hdl.handle.net/1721.1/164255</id>
<updated>2025-12-10T06:57:52Z</updated>
<published>2025-09-08T00:00:00Z</published>
<summary type="text">Kernel Extension DSLs Should Be Verifier-Safe!
Solleza, Franco; Adam, Justus; Crotty, Andrew; Narayan, Akshay; Schwarzkopf, Malte; Tatbul, Nesime
eBPF allows developers to write safe operating system extensions, but writing these extensions remains challenging because it requires detailed knowledge of both the extension's domain and eBPF's programming interface. Most importantly, the extension must pass the eBPF verifier.&#13;
This paper argues that DSLs for extensions should guarantee verifier-safety: valid DSL programs should result in eBPF code that always passes the verifier. This avoids complex debugging and the need for extension developers to be eBPF experts. We show that three existing DSLs for different domains are compatible with verifier-safety. Beyond verifier-safety, practical extension DSLs must also achieve good performance. Inspired by database query optimization, we sketch an approach to creating DSL-specific optimizers capable of maintaining verifier-safety. A preliminary evaluation shows that optimizing verifier-safe extension performance is feasible.
eBPF ’25, September 8–11, 2025, Coimbra, Portugal
</summary>
<dc:date>2025-09-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Experiencing EmbedNet: Embedding self-sensing to 3D casting objects</title>
<link href="https://hdl.handle.net/1721.1/164254" rel="alternate"/>
<author>
<name>Liu, Fangzheng</name>
</author>
<author>
<name>Dementyev, Artem</name>
</author>
<author>
<name>Wicaksono, Irmandy</name>
</author>
<author>
<name>Paradiso, Joseph</name>
</author>
<id>https://hdl.handle.net/1721.1/164254</id>
<updated>2025-12-10T06:57:19Z</updated>
<published>2025-09-27T00:00:00Z</published>
<summary type="text">Experiencing EmbedNet: Embedding self-sensing to 3D casting objects
Liu, Fangzheng; Dementyev, Artem; Wicaksono, Irmandy; Paradiso, Joseph
This paper introduces EmbedNet, a method for integrating dense sensor networks into casting objects. With EmbedNet, sensor nodes are seamlessly incorporated into casting objects during fabrication. The process involves extruding base materials like silicone rubber or liquid plastic and a custom-designed sensor strip using a hand-held extruder into a mold tailored to specific applications. The base material mixes with the sensor strip in the mold, and upon curing, the result is an object with a defined shape housing a sensor network. EmbedNet employs a small Host node to access sensor data from all nodes on the strip. Each sensor node is self-contained and provides status indications through an onboard RGB LED. The Host connects with all sensor nodes using just three wires: power, ground, and data. This one-wire communication is facilitated through a custom-designed software serial port for each sensor node. The paper showcases various applications of EmbedNet, including wearables, home sensing, and entertainment devices.
UIST Adjunct ’25, Busan, Republic of Korea
</summary>
<dc:date>2025-09-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Demonstrating NeuroFlux: A Non-Invasive Peripheral Magnetic Stimulation Device for Multimodal Haptic Feedback</title>
<link href="https://hdl.handle.net/1721.1/164253" rel="alternate"/>
<author>
<name>Huang, Bingjian</name>
</author>
<author>
<name>Chin, Sam</name>
</author>
<author>
<name>Wigdor, Daniel</name>
</author>
<author>
<name>Paradiso, Joseph</name>
</author>
<id>https://hdl.handle.net/1721.1/164253</id>
<updated>2025-12-10T06:57:50Z</updated>
<published>2025-09-27T00:00:00Z</published>
<summary type="text">Demonstrating NeuroFlux: A Non-Invasive Peripheral Magnetic Stimulation Device for Multimodal Haptic Feedback
Huang, Bingjian; Chin, Sam; Wigdor, Daniel; Paradiso, Joseph
We demonstrate NeuroFlux, a wearable armband that delivers multimodal haptic feedback through non-invasive peripheral magnetic stimulation. Unlike conventional haptic devices limited to either tactile or kinesthetic modalities, NeuroFlux stimulates peripheral nerves to independently evoke both muscle movements and localized skin sensations. Our system features a custom-designed control circuit and a multi-coil armband, enabling precise, real-time control of stimulation location and intensity. This hardware innovation significantly expands the design space of haptic feedback by bridging kinesthetic and tactile modalities through a single, compact device. In our demonstration, participants will experience a wide range of magnetically induced haptic sensations, including independent stimulation of muscular and cutaneous nerves in the forearm. The setup includes interactive tasks that showcase NeuroFlux’s ability to generate diverse haptic effects such as finger flexion, wrist movement, as well as immersive virtual reality object interactions. By offering hands-on exposure to peripheral magnetic stimulation, we aim to spark new research directions in multimodal haptic feedback and make neural stimulation more accessible to the HCI community.
UIST Adjunct ’25, Busan, Republic of Korea
</summary>
<dc:date>2025-09-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Supernotes: Driving Consensus in Crowd-Sourced Fact-Checking</title>
<link href="https://hdl.handle.net/1721.1/164252" rel="alternate"/>
<author>
<name>De, Soham</name>
</author>
<author>
<name>Bakker, Michiel</name>
</author>
<author>
<name>Baxter, Jay</name>
</author>
<author>
<name>Saveski, Martin</name>
</author>
<id>https://hdl.handle.net/1721.1/164252</id>
<updated>2025-12-10T06:57:49Z</updated>
<published>2025-04-22T00:00:00Z</published>
<summary type="text">Supernotes: Driving Consensus in Crowd-Sourced Fact-Checking
De, Soham; Bakker, Michiel; Baxter, Jay; Saveski, Martin
X's Community Notes, a crowd-sourced fact-checking system, allows users to annotate potentially misleading posts. Notes rated as helpful by a diverse set of users are prominently displayed below the original post. While demonstrably effective at reducing misinformation's impact when notes are displayed, there is an opportunity for notes to appear on many more posts: for 91% of posts where at least one note is proposed, no notes ultimately achieve sufficient support from diverse users to be shown on the platform. This motivates the development of Supernotes: AI-generated notes that synthesize information from several existing community notes and are written to foster consensus among a diverse set of users. Our framework uses an LLM to generate many diverse Supernote candidates from existing proposed notes. These candidates are then evaluated by a novel scoring model, trained on millions of historical Community Notes ratings, selecting candidates that are most likely to be rated helpful by a diverse set of users. To test our framework, we ran a human subjects experiment in which we asked participants to compare the Supernotes generated by our framework to the best existing community notes for 100 sample posts. We found that participants rated the Supernotes as significantly more helpful, and when asked to choose between the two, preferred the Supernotes 75.2% of the time. Participants also rated the Supernotes more favorably than the best existing notes on quality, clarity, coverage, context, and argumentativeness. Finally, in a follow-up experiment, we asked participants to compare the Supernotes against LLM-generated summaries and found that the participants rated the Supernotes significantly more helpful, demonstrating that both the LLM-based candidate generation and the consensus-driven scoring play crucial roles in creating notes that effectively build consensus among diverse users.
WWW ’25, Sydney, NSW, Australia
</summary>
<dc:date>2025-04-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>I Feel Your Pain: a Haptic Interface for Improving Pain Literacy</title>
<link href="https://hdl.handle.net/1721.1/164251" rel="alternate"/>
<author>
<name>Yin, Peggy</name>
</author>
<author>
<name>Chen, Sofia</name>
</author>
<author>
<name>Chang, Ethan</name>
</author>
<id>https://hdl.handle.net/1721.1/164251</id>
<updated>2025-12-10T06:57:16Z</updated>
<published>2025-09-27T00:00:00Z</published>
<summary type="text">I Feel Your Pain: a Haptic Interface for Improving Pain Literacy
Yin, Peggy; Chen, Sofia; Chang, Ethan
There is no sensation more universal and misunderstood than pain. While pain presents itself in nearly every eukaryotic organism, it remains one of the most elusive disease states to express, let alone treat. Here, we introduce Pain by Numbers, a haptic, immersive storytelling interface that facilitates user recognition and communication of low-to-medium-intensity pain, in order to improve pain literacy for patients, physicians, and society-at-large.
UIST Adjunct ’25, Busan, Republic of Korea
</summary>
<dc:date>2025-09-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Understanding and Scaling Collaborative Filtering Optimization from the Perspective of Matrix Rank</title>
<link href="https://hdl.handle.net/1721.1/164250" rel="alternate"/>
<author>
<name>Loveland, Donald</name>
</author>
<author>
<name>Wu, Xinyi</name>
</author>
<author>
<name>Zhao, Tong</name>
</author>
<author>
<name>Koutra, Danai</name>
</author>
<author>
<name>Shah, Neil</name>
</author>
<author>
<name>Ju, Mingxuan</name>
</author>
<id>https://hdl.handle.net/1721.1/164250</id>
<updated>2025-12-10T06:57:47Z</updated>
<published>2025-04-22T00:00:00Z</published>
<summary type="text">Understanding and Scaling Collaborative Filtering Optimization from the Perspective of Matrix Rank
Loveland, Donald; Wu, Xinyi; Zhao, Tong; Koutra, Danai; Shah, Neil; Ju, Mingxuan
Collaborative Filtering (CF) methods dominate real-world recommender systems given their ability to learn high-quality, sparse ID-embedding tables that effectively capture user preferences. These tables scale linearly with the number of users and items, and are trained to ensure high similarity between embeddings of interacted user-item pairs, while maintaining low similarity for non-interacted pairs. Despite their high performance, encouraging dispersion for non-interacted pairs necessitates expensive regularization (e.g., negative sampling), hurting runtime and scalability. Existing research tends to address these challenges by simplifying the learning process, either by reducing model complexity or sampling data, trading performance for runtime. In this work, we move beyond model-level modifications and study the properties of the embedding tables under different learning strategies. Through theoretical analysis, we find that the singular values of the embedding tables are intrinsically linked to different CF loss functions. These findings are empirically validated on real-world datasets, demonstrating the practical benefits of higher stable rank -- a continuous version of matrix rank which encodes the distribution of singular values. Based on these insights, we propose an efficient warm-start strategy that regularizes the stable rank of the user and item embeddings. We show that stable rank regularization during early training phases can promote higher-quality embeddings, resulting in training speed improvements of up to 65.9%. Additionally, stable rank regularization can act as a proxy for negative sampling, allowing for performance gains of up to 21.2% over loss functions with small negative sampling ratios. Overall, our analysis unifies current CF methods under a new perspective -- their optimization of stable rank -- motivating a flexible regularization method that is easy to implement, yet effective at enhancing CF systems.
WWW ’25, April 28-May 2, 2025, Sydney, NSW, Australia
</summary>
<dc:date>2025-04-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>21W.749 / CMS.935 Documentary Photography and Photojournalism: Still Images of a World in Motion, Spring 2016</title>
<link href="https://hdl.handle.net/1721.1/144327.2" rel="alternate"/>
<author>
<name>Colen, B. D.</name>
</author>
<id>https://hdl.handle.net/1721.1/144327.2</id>
<updated>2025-12-09T19:31:47Z</updated>
<published>2016-06-01T00:00:00Z</published>
<summary type="text">21W.749 / CMS.935 Documentary Photography and Photojournalism: Still Images of a World in Motion, Spring 2016
Colen, B. D.
In this course, you will be exposed to the work of many great documentary photographers and photojournalists, as well as to writing about the documentary tradition. Further, throughout the term, you will hone your photographic skills and 'eye,' and you will work on a photo documentary project of your own, attempting to reduce a tiny area of the moving world to a set of still images that convey what the viewer needs to know about what you saw&amp;mdash;without hearing the sounds, smelling the odors, experiencing what was happening outside the viewfinder, and without seeing the motion.
</summary>
<dc:date>2016-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Unified and Generalizable Reinforcement Learning for Facility Location Problems on Graphs</title>
<link href="https://hdl.handle.net/1721.1/164249" rel="alternate"/>
<author>
<name>Guo, Wenxuan</name>
</author>
<author>
<name>Wang, Runzhong</name>
</author>
<author>
<name>Xu, Yanyan</name>
</author>
<author>
<name>Jin, Yaohui</name>
</author>
<id>https://hdl.handle.net/1721.1/164249</id>
<updated>2025-12-10T06:56:51Z</updated>
<published>2025-04-22T00:00:00Z</published>
<summary type="text">Unified and Generalizable Reinforcement Learning for Facility Location Problems on Graphs
Guo, Wenxuan; Wang, Runzhong; Xu, Yanyan; Jin, Yaohui
Facility location problems on graphs are ubiquitous in the real world and hold significant importance, yet their resolution is often impeded by NP-hardness. MIP solvers can find the optimal solutions but fail to handle large instances, while algorithm efficiency has a higher priority in cases of emergency. Recently, machine learning methods have been proposed to tackle such classical problems with fast inference, but they are limited to the myopic constructive pattern and only consider simple cases in Euclidean space. This paper introduces a unified and generalizable approach to tackle facility location problems on weighted graphs with deep reinforcement learning, demonstrating a keen awareness of complex graph structures. Striking a harmonious balance between solution quality and running time, our method stands out with superior efficiency and steady performance. Our model trained on small graphs is highly scalable and consistently generates high-quality solutions, achieving a speedup of more than 2000 times to Gurobi on instances with 1000 nodes. The experiments on Shanghai road networks further demonstrate its practical value in solving real-world problems. The source codes are available at https://github.com/AryaGuo/PPO-swap.
WWW ’25, Sydney, NSW, Australia
</summary>
<dc:date>2025-04-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Paratrouper: Exploratory Creation of Character Cast Visuals Using Generative AI</title>
<link href="https://hdl.handle.net/1721.1/164248" rel="alternate"/>
<author>
<name>Leong, Joanne</name>
</author>
<author>
<name>Ledo, David</name>
</author>
<author>
<name>Driscoll, Thomas</name>
</author>
<author>
<name>Grossman, Tovi</name>
</author>
<author>
<name>Fitzmaurice, George</name>
</author>
<author>
<name>Anderson, Fraser</name>
</author>
<id>https://hdl.handle.net/1721.1/164248</id>
<updated>2025-12-10T06:57:09Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Paratrouper: Exploratory Creation of Character Cast Visuals Using Generative AI
Leong, Joanne; Ledo, David; Driscoll, Thomas; Grossman, Tovi; Fitzmaurice, George; Anderson, Fraser
Great characters are critical to the success of many forms of media, such as comics, games, and films. Designing visually compelling casts of characters requires significant skill and consideration, and there is a lack of specialized tools to support this endeavor. We investigate how AI-driven image-generation techniques can empower creatives to explore a variety of visual design possibilities for individual and groups of characters. Informed by interviews with character designers, Paratrouper is a multi-modal system that enables creating and experimenting with multiple permutations for character casts and visualizing them in various contexts as part of a holistic approach to design. We demonstrate how Paratrouper supports different aspects of the character design process, and share insights from its use by eight creators. Our work highlights the interplay between creative agency and serendipity, as well as the visual interrelationships among character aesthetics.
Joanne Leong, David Ledo, Thomas Driscoll, Tovi Grossman, George Fitzmaurice, and Fraser Anderson. 2025. Paratrouper: Exploratory Creation of Character Cast Visuals Using Generative AI. In Proceedings of the 2025 CHI Conference on Human Factors in Computing Systems (CHI '25). Association for Computing Machinery, New York, NY, USA, Article 189, 1–20.
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>FiberCircuits: A Miniaturization Framework To Manufacture Fibers That Embed Integrated Circuits</title>
<link href="https://hdl.handle.net/1721.1/164247" rel="alternate"/>
<author>
<name>Honnet, Cedric</name>
</author>
<author>
<name>Babatain, Wedyan</name>
</author>
<author>
<name>Luo, Yiyue</name>
</author>
<author>
<name>Kilic Afsar, Ozgun</name>
</author>
<author>
<name>Bensahel, Chloe</name>
</author>
<author>
<name>Nicita, Sarah</name>
</author>
<author>
<name>Zhu, Yunyi</name>
</author>
<author>
<name>Danielescu, Andreea</name>
</author>
<author>
<name>Gershenfeld, Neil</name>
</author>
<author>
<name>Paradiso, Joseph</name>
</author>
<id>https://hdl.handle.net/1721.1/164247</id>
<updated>2025-12-10T06:57:23Z</updated>
<published>2025-09-27T00:00:00Z</published>
<summary type="text">FiberCircuits: A Miniaturization Framework To Manufacture Fibers That Embed Integrated Circuits
Honnet, Cedric; Babatain, Wedyan; Luo, Yiyue; Kilic Afsar, Ozgun; Bensahel, Chloe; Nicita, Sarah; Zhu, Yunyi; Danielescu, Andreea; Gershenfeld, Neil; Paradiso, Joseph
UIST ’25, Busan, Republic of Korea
</summary>
<dc:date>2025-09-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>FIP: Endowing Robust Motion Capture on Daily Garment by Fusing Flex and Inertial Sensors</title>
<link href="https://hdl.handle.net/1721.1/164246" rel="alternate"/>
<author>
<name>Zheng, Ruonan</name>
</author>
<author>
<name>Fang, Jiawei</name>
</author>
<author>
<name>Yao, Yuan</name>
</author>
<author>
<name>Gao, Xiaoxia</name>
</author>
<author>
<name>Zuo, Chengxu</name>
</author>
<author>
<name>Guo, Shihui</name>
</author>
<author>
<name>Luo, Yiyue</name>
</author>
<id>https://hdl.handle.net/1721.1/164246</id>
<updated>2025-12-10T06:57:04Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">FIP: Endowing Robust Motion Capture on Daily Garment by Fusing Flex and Inertial Sensors
Zheng, Ruonan; Fang, Jiawei; Yao, Yuan; Gao, Xiaoxia; Zuo, Chengxu; Guo, Shihui; Luo, Yiyue
What if our clothes could capture our body motion accurately? This paper introduces Flexible Inertial Poser (FIP), a novel motion-capturing system using daily garments with two elbow-attached flex sensors and four Inertial Measurement Units (IMUs). To address the inevitable sensor displacements in loose wearables which degrade joint tracking accuracy significantly, we identify the distinct characteristics of the flex and inertial sensor displacements and develop a Displacement Latent Diffusion Model and a Physics-informed Calibrator to compensate for sensor displacements based on such observations, resulting in a substantial improvement in motion capture accuracy. We also introduce a Pose Fusion Predictor to enhance multimodal sensor fusion. Extensive experiments demonstrate that our method achieves robust performance across varying body shapes and motions, significantly outperforming SOTA IMU approaches with a 19.5% improvement in angular error, a 26.4% improvement in elbow angular error, and a 30.1% improvement in positional error. FIP opens up opportunities for ubiquitous human-computer interactions and diverse interactive applications such as Metaverse, rehabilitation, and fitness analysis. Our project page can be seen at Flexible Inertial Poser.
CHI ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>GPU-accelerated dynamic nonlinear optimization with ExaModels and MadNLP</title>
<link href="https://hdl.handle.net/1721.1/164245" rel="alternate"/>
<author>
<name>Pacaud, François</name>
</author>
<author>
<name>Shin, Sungho</name>
</author>
<id>https://hdl.handle.net/1721.1/164245</id>
<updated>2025-12-10T06:57:44Z</updated>
<published>2025-02-26T00:00:00Z</published>
<summary type="text">GPU-accelerated dynamic nonlinear optimization with ExaModels and MadNLP
Pacaud, François; Shin, Sungho
We investigate the potential of Graphics Processing Units (GPUs) to solve large-scale nonlinear programs with a dynamic structure. Using ExaModels, a GPU-accelerated automatic differentiation tool, and the interior-point solver MadNLP, we significantly reduce the time to solve dynamic nonlinear optimization problems. The sparse linear systems formulated in the interior-point method is solved on the GPU using a hybrid solver combining an iterative method with a sparse Cholesky factorization, which harness the newly released NVIDIA cuDSS solver. Our results on the classical distillation column instance show that despite a significant pre-processing time, the hybrid solver allows to reduce the time per iteration by a factor of $\mathbf{2 5}$ for the largest instance.
2024 IEEE 63rd Conference on Decision and Control (CDC), Milan, Italy, 2024
</summary>
<dc:date>2025-02-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Scalable Primal Decomposition Schemes for Large-Scale Infrastructure Networks</title>
<link href="https://hdl.handle.net/1721.1/164244" rel="alternate"/>
<author>
<name>Engelmann, Alexander</name>
</author>
<author>
<name>Shin, Sungho</name>
</author>
<author>
<name>Pacaud, François</name>
</author>
<author>
<name>Zavala, Victor M</name>
</author>
<id>https://hdl.handle.net/1721.1/164244</id>
<updated>2026-04-14T03:30:29Z</updated>
<published>2025-06-01T00:00:00Z</published>
<summary type="text">Scalable Primal Decomposition Schemes for Large-Scale Infrastructure Networks
Engelmann, Alexander; Shin, Sungho; Pacaud, François; Zavala, Victor M
The operation of large-scale infrastructure networks requires scalable optimization schemes. To guarantee safe system operation, a high degree of feasibility in a small number of iterations is important. Decomposition schemes can help to achieve scalability. In terms of feasibility, however, classical approaches, such as the alternating direction method of multipliers (ADMMs), often converge slowly. In this work, we present primal decomposition schemes for hierarchically structured strongly convex quadratic programs. These schemes offer high degrees of feasibility in a small number of iterations in combination with global convergence guarantees. We benchmark their performance against the centralized off-the-shelf interior-point solver Ipopt and ADMM on problems with up to 300 000 decision variables and constraints. We find that the proposed approaches solve problems as fast as Ipopt, but with reduced communication and without requiring a full model exchange. Moreover, the proposed schemes achieve a higher accuracy than ADMM.
</summary>
<dc:date>2025-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Coplanarity of rooted spanning-tree vectors</title>
<link href="https://hdl.handle.net/1721.1/164243" rel="alternate"/>
<author>
<name>Polettini, Matteo</name>
</author>
<author>
<name>Harunari, Pedro E.</name>
</author>
<author>
<name>Cengio, Sara D.</name>
</author>
<author>
<name>Lecomte, Vivien</name>
</author>
<id>https://hdl.handle.net/1721.1/164243</id>
<updated>2025-12-09T03:11:01Z</updated>
<published>2025-12-05T00:00:00Z</published>
<summary type="text">Coplanarity of rooted spanning-tree vectors
Polettini, Matteo; Harunari, Pedro E.; Cengio, Sara D.; Lecomte, Vivien
Employing a recent technology of tree surgery, we prove a “deletion–constriction” formula for products of rooted spanning-trees on weighted directed graphs that generalizes deletion–contraction on undirected graphs. The formula implies that, letting τ x ∅ , τ x + , and τ x - be the rooted spanning-tree polynomials obtained, respectively, by removing both directed edges between two vertices, or by forcing the tree to pass through either edge, the vectors ( τ x ∅ , τ x + , τ x - ) are coplanar for all roots x . We deploy the result to give an alternative derivation of a recently found mutual linearity of stationary currents of Markov chains. We generalize deletion–constriction and current linearity for two pairs of edges and conjecture that similar results may hold for arbitrary subsets of edges.
</summary>
<dc:date>2025-12-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Search for the decay B0 → ϕϕ</title>
<link href="https://hdl.handle.net/1721.1/164242" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<author>
<name>Aleksiejunas, R.</name>
</author>
<id>https://hdl.handle.net/1721.1/164242</id>
<updated>2026-04-14T03:30:18Z</updated>
<published>2025-12-03T00:00:00Z</published>
<summary type="text">Search for the decay B0 → ϕϕ
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.; Aleksiejunas, R.
A search for the decay B0 → ϕϕ is made using pp collision data collected with the LHCb detector at centre-of-mass energies of 7, 8 and 13 TeV, corresponding to an integrated luminosity of 9 fb−1. No significant signal is observed, and an upper limit on the branching fraction of 1.3 (1.4) × 10−8 at 90 (95)% confidence level is set. This result supersedes the previous LHCb study and improves the upper limit by a factor of two.
</summary>
<dc:date>2025-12-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Regulating Sommerfeld resonances for multi-state systems and higher partial waves</title>
<link href="https://hdl.handle.net/1721.1/164241" rel="alternate"/>
<author>
<name>Parikh, Aditya</name>
</author>
<author>
<name>Sato, Ryosuke</name>
</author>
<author>
<name>Slatyer, Tracy R.</name>
</author>
<id>https://hdl.handle.net/1721.1/164241</id>
<updated>2026-04-14T03:30:19Z</updated>
<published>2025-12-03T00:00:00Z</published>
<summary type="text">Regulating Sommerfeld resonances for multi-state systems and higher partial waves
Parikh, Aditya; Sato, Ryosuke; Slatyer, Tracy R.
Long-range attractive interactions between dark matter particles can significantly enhance their annihilation, particularly at low velocities. This “Sommerfeld enhancement” is typically computed by evaluating the deformation of the two-particle wavefunction due to the long-range potential, while ignoring the physics associated with the annihilation, and then scaling the appropriate annihilation matrix elements by factors that depend on the wavefunction in the limit where the particles approach zero relative separation. It has long been recognized that this approach is a valid approximation only in the limit where the annihilation rate is small, and breaks down in the regime where the enhanced annihilation rate approaches the unitarity bound, in which case ignoring the impact of the annihilation physics on the two-particle wavefunction cannot be justified and leads to apparent violations of unitarity. In the case where the physics relevant to annihilation occurs at a parametrically shorter distance scale (higher energy scale) compared with the long-range potential, we provide a simple prescription for correcting the Sommerfeld enhancement for the effects of the short-range physics, valid for all partial waves and for systems where multiple states are coupled by the long-range potential.
</summary>
<dc:date>2025-12-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>A field guide to event-shape observables using optimal transport</title>
<link href="https://hdl.handle.net/1721.1/164240" rel="alternate"/>
<author>
<name>Cesarotti, Cari</name>
</author>
<author>
<name>LeBlanc, Matt</name>
</author>
<id>https://hdl.handle.net/1721.1/164240</id>
<updated>2026-04-14T03:30:17Z</updated>
<published>2025-12-02T00:00:00Z</published>
<summary type="text">A field guide to event-shape observables using optimal transport
Cesarotti, Cari; LeBlanc, Matt
We lay out the phenomenological behavior of event-shape observables evaluated by solving optimal transport problems between collider events and reference geometries — which we name manifold distances — to provide guidance regarding their use in future studies. This discussion considers several choices related to the metric used to quantify these distances. We explore the differences between the various options, for the first time using a combination of analytical studies and simulated minimum-bias and multi-jet events. Making judicious choices when defining the metric and reference geometry can improve sensitivity to interesting signal features and reduce sensitivity to non-perturbative effects in QCD. The goal of this article is to provide a ‘field guide’ that can inform how choices made when defining a manifold distance can be tailored for the analysis at-hand.
</summary>
<dc:date>2025-12-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Search for the lepton-flavour-violating decays B0 → K*0τ±e∓</title>
<link href="https://hdl.handle.net/1721.1/164239" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164239</id>
<updated>2026-04-14T03:30:20Z</updated>
<published>2025-11-26T00:00:00Z</published>
<summary type="text">Search for the lepton-flavour-violating decays B0 → K*0τ±e∓
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.
A first search at LHCb for the lepton-flavour-violating decays B0 → K*0τ±e∓ is presented. The analysis is performed using a sample of proton-proton collision data, collected with the LHCb detector at a centre-of-mass energy of 13 TeV between 2016 and 2018, corresponding to an integrated luminosity of 5.4 fb−1. No significant signal is observed, and upper limits on the branching fractions are determined to be B B 0 → K ∗ 0 τ − e + &lt; 5.9 7.1 × 10 − 6 and B B 0 → K ∗ 0 τ + e − &lt; 4.9 5.9 × 10 − 6 at the 90% (95%) confidence level. These results correspond to the current most stringent upper limits for b → sτl transitions.
</summary>
<dc:date>2025-11-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Guidelines for environmental life cycle assessment of cultivated meat</title>
<link href="https://hdl.handle.net/1721.1/164238" rel="alternate"/>
<author>
<name>Blackstone, Nicole T.</name>
</author>
<author>
<name>Pavlova, Anisiya</name>
</author>
<author>
<name>Trinidad, Kirsten R.</name>
</author>
<author>
<name>Nikkhah, Amin</name>
</author>
<author>
<name>Sinke, Pelle</name>
</author>
<author>
<name>Heller, Martin</name>
</author>
<author>
<name>Duncan-Duggal, Joe</name>
</author>
<author>
<name>Ridoutt, Brad</name>
</author>
<author>
<name>Smetana, Sergiy</name>
</author>
<author>
<name>Makov, Tamar</name>
</author>
<author>
<name>Shabtai, Shira</name>
</author>
<id>https://hdl.handle.net/1721.1/164238</id>
<updated>2026-04-14T03:30:12Z</updated>
<published>2025-12-03T00:00:00Z</published>
<summary type="text">Guidelines for environmental life cycle assessment of cultivated meat
Blackstone, Nicole T.; Pavlova, Anisiya; Trinidad, Kirsten R.; Nikkhah, Amin; Sinke, Pelle; Heller, Martin; Duncan-Duggal, Joe; Ridoutt, Brad; Smetana, Sergiy; Makov, Tamar; Shabtai, Shira
Purpose Cultivated meat is produced by growing animal cells in vitro without using, or reducing the use of, animals for meat, poultry, or seafood production. Responsibly and consistently investigating the environmental impacts of cultivated meat is essential to provide reliable performance benchmarks and realistic comparisons with animal-based production systems. In this contribution, we provide technical, actionable guidelines for conducting life cycle assessments (LCAs) of cultivated meat and highlight further research needs for the field. Methods We assembled a global team of recognized and active scientists in cultivated meat LCA, livestock systems LCA, and ISO LCA standards to develop this set of guidelines using a workshop (in person and online) and online meetings, as well as asynchronous feedback, to reach consensus. Results and discussion These guidelines provide specifications throughout the four phases of LCA, from goal definition to the interpretation of LCA results. Data gaps, including the availability and quality of feed or food-grade culture media component inventories, are among the areas highlighted for further exploration. Conclusion We invite LCA practitioners to apply these guidelines when investigating cultivated meat systems to increase the consistency and reliability of environmental impact evaluations for these emerging products.
</summary>
<dc:date>2025-12-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sharp Bound for the Erdős–Straus Non-averaging Set Problem</title>
<link href="https://hdl.handle.net/1721.1/164237" rel="alternate"/>
<author>
<name>Pham, Huy T.</name>
</author>
<author>
<name>Zakharov, Dmitrii</name>
</author>
<id>https://hdl.handle.net/1721.1/164237</id>
<updated>2026-04-14T03:30:14Z</updated>
<published>2025-12-03T00:00:00Z</published>
<summary type="text">Sharp Bound for the Erdős–Straus Non-averaging Set Problem
Pham, Huy T.; Zakharov, Dmitrii
A set of integers A is non-averaging if there is no element a in A which can be written as an average of a subset of A not containing a . We show that the largest non-averaging subset of { 1 , … , n } has size n 1 / 4 + o ( 1 ) , thus solving the Erdős–Straus problem. We also determine the largest size of a non-averaging set in a d -dimensional box for any fixed d . Our main tool includes the structure theorem for the set of subset sums due to Conlon, Fox and the first author, together with a result about the structure of a point set in nearly convex position.
</summary>
<dc:date>2025-12-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Seasonal variations of the atmospheric muon neutrino spectrum measured with IceCube</title>
<link href="https://hdl.handle.net/1721.1/164236" rel="alternate"/>
<author>
<name>IceCube Collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/164236</id>
<updated>2026-04-14T03:30:13Z</updated>
<published>2025-12-01T00:00:00Z</published>
<summary type="text">Seasonal variations of the atmospheric muon neutrino spectrum measured with IceCube
IceCube Collaboration
This study presents an analysis of seasonal variations in the atmospheric muon neutrino flux, using 11.3 years of data from the IceCube Neutrino Observatory. By leveraging a novel spectral unfolding method, we explore the energy range from 125 GeV to 10 TeV for zenith angles from 90 ∘ to 110 ∘ , corresponding to the Antarctic atmosphere. Our findings reveal that the differential measurement of the amplitudes of the seasonal variation is consistent with an energy-dependent decrease reaching ( - 4.5 ± 1.2)% during Austral winter and increase to (+ 3.9 ± 1.3)% during Austral summer relative to the annual average at 10 TeV. While the unfolded flux exceeds the model predictions by up to 30%, the differential measurement of the seasonal to annual average flux remains unaffected. The measured seasonal variations of the muon neutrino spectrum are consistent with theoretical predictions using the MCEq code and the NRLMSISE-00 atmospheric model.
</summary>
<dc:date>2025-12-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Capacity lower bound for the Ising perceptron</title>
<link href="https://hdl.handle.net/1721.1/164235" rel="alternate"/>
<author>
<name>Ding, Jian</name>
</author>
<author>
<name>Sun, Nike</name>
</author>
<id>https://hdl.handle.net/1721.1/164235</id>
<updated>2026-04-14T03:30:14Z</updated>
<published>2025-02-23T00:00:00Z</published>
<summary type="text">Capacity lower bound for the Ising perceptron
Ding, Jian; Sun, Nike
We consider the Ising perceptron with gaussian disorder, which is equivalent to the discrete cube { - 1 , + 1 } N intersected by M random half-spaces. The perceptron’s capacity is the largest integer M N for which the intersection is nonempty. It is conjectured by Krauth and Mézard (1989) that the (random) ratio M N / N converges in probability to an explicit constant α ⋆ ≐ 0.83 . Kim and Roche (1998) proved the existence of a positive constant γ such that γ ⩽ M N / N ⩽ 1 - γ with high probability; see also Talagrand (1999). In this paper we show that the Krauth–Mézard conjecture α ⋆ is a lower bound with positive probability, under the condition that an explicit univariate function S ⋆ ( λ ) is maximized at λ = 0 . Our proof is an application of the second moment method to a certain slice of perceptron configurations, as selected by the so-called TAP (Thouless, Anderson, and Palmer, 1977) or AMP (approximate message passing) iteration, whose scaling limit has been characterized by Bayati and Montanari (2011) and Bolthausen (2012).
</summary>
<dc:date>2025-02-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tackling the UK’s regional economic inequality: binding constraints and avenues for policy intervention</title>
<link href="https://hdl.handle.net/1721.1/164234" rel="alternate"/>
<author>
<name>Stansbury, Anna</name>
</author>
<author>
<name>Turner, Dan</name>
</author>
<author>
<name>Balls, Ed</name>
</author>
<id>https://hdl.handle.net/1721.1/164234</id>
<updated>2026-04-14T03:30:26Z</updated>
<published>2023-08-14T00:00:00Z</published>
<summary type="text">Tackling the UK’s regional economic inequality: binding constraints and avenues for policy intervention
Stansbury, Anna; Turner, Dan; Balls, Ed
We analyse binding constraints to productivity growth in the UK’s regions outside London and the greater South East. These analyses challenge a number of common arguments about the UK’s regional economic inequality problem. We find little evidence consistent with the hypotheses (i) that low shares of university graduates remain the primary constraint on growth for the UK’s regions; (ii) that there is a generalised issue with access to finance for firms outside the South East; or (iii) that low or falling regional migration rates are to blame for the persistence of the UK’s regional economic inequalities. Instead, we find evidence consistent with (i) a specific relative shortage of STEM degrees; (ii) binding transport infrastructure constraints within major non-London conurbations; (iii) a failure of public innovation policy to support clusters beyond the South East, in particular through the regional distribution of public support for Research and Development (R&amp;D); and (iv) missed opportunities for higher internal mobility due to London’s overheating housing market. We also find some suggestive evidence consistent with constraints on access to early-stage equity financing for high-growth-potential SMEs in certain regions.
</summary>
<dc:date>2023-08-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Chile’s Inclusion Law: the arduous drive to regulate an unequal education system, 2006–19</title>
<link href="https://hdl.handle.net/1721.1/164233" rel="alternate"/>
<author>
<name>Cummings, Peter MM</name>
</author>
<author>
<name>Mizala, Alejandra</name>
</author>
<author>
<name>Schneider, Ben Ross</name>
</author>
<id>https://hdl.handle.net/1721.1/164233</id>
<updated>2026-04-14T03:30:21Z</updated>
<published>2025-04-16T00:00:00Z</published>
<summary type="text">Chile’s Inclusion Law: the arduous drive to regulate an unequal education system, 2006–19
Cummings, Peter MM; Mizala, Alejandra; Schneider, Ben Ross
Chile’s Inclusion Law, passed in 2015, significantly increased government regulation of one of the most privatised education systems in the world and provided major redistributive benefits. How did Chile’s government succeed in passing and implementing this legislation in the face of a powerful and cohesive opposition? Our study finds that student protesters served as the initial impetus, shaping the education debate and increasing the political salience and urgency of education reform. In line with power resource theory, other left movement organisations and voters used their power to support redistributive education reform, and Bachelet’s centre-left coalition followed through on its mandate by proposing the Inclusion Law. Also, a well-connected policy network helped articulate problems with the status quo and shaped the specifics of the education bill. To develop this argument, the paper draws on historical information on the student movement in Chile, quantitative data on education stakeholder appearances in the press, public opinion surveys, and detailed analysis of the 13-month legislative proceedings – to explain the law’s passage in congress. To underscore the significance of the Inclusion Law and to contextualise the Chilean case, the paper also compares Chile to other countries with nation-wide school choice systems.
</summary>
<dc:date>2025-04-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bayesian Network–Based Fault Diagnostic System for Nuclear Power Plant Assets</title>
<link href="https://hdl.handle.net/1721.1/164232" rel="alternate"/>
<author>
<name>Zhao, Xingang</name>
</author>
<author>
<name>Wang, Xinyan</name>
</author>
<author>
<name>Golay, Michael W</name>
</author>
<id>https://hdl.handle.net/1721.1/164232</id>
<updated>2026-04-14T03:30:21Z</updated>
<published>2023-03-04T00:00:00Z</published>
<summary type="text">Bayesian Network–Based Fault Diagnostic System for Nuclear Power Plant Assets
Zhao, Xingang; Wang, Xinyan; Golay, Michael W
Future advances in nuclear power technologies call for enhanced operator advice and autonomous control capabilities that can leverage simpler designs and increased safety features to reduce reliance on human labor. One of the first tasks in the development of such capabilities is the formulation of symptom-based conditional failure probabilities for the plant structures, systems, and components (SSCs) of interest. The primary goal is to aid plant personnel in (1) deducing the probabilistic performance status of the monitored SSCs and (2) detecting impending faults/failures. The task of estimating conditional failure probability is a bidirectional inference problem, and a logical approach is to use the Bayesian network (BN) method. As a knowledge-based explainable artificial intelligence tool and a probabilistic graphical model, BN offers reasoning capability under uncertainty, graphical representation emulating physical behavior of the target SSC, and interpretability of the model structure and results. This paper provides a systematic overview of the BN technique and the software tools for implementing BN models, along with the associated knowledge representation and reasoning paradigm. Both operational data and expert judgment can be readily incorporated into the knowledge base of a BN model. The challenges with data availability are highlighted, and the general approach to target SSC identification is presented. The focus is on failure-prone and risk-important balance of plant assets, especially for cases with strong operator involvement. Two example case studies on the failure of (1) a centrifugal pump and (2) an electric motor are conducted to demonstrate the usefulness and technical feasibility of the proposed BN-based fault diagnostic system using an expert system shell.
</summary>
<dc:date>2023-03-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Your body tells more than words – predicting perceived meeting productivity through body signals</title>
<link href="https://hdl.handle.net/1721.1/164231" rel="alternate"/>
<author>
<name>Zeyda, Maximilian</name>
</author>
<author>
<name>Stracke, Selina</name>
</author>
<author>
<name>Knipfer, Kristin</name>
</author>
<author>
<name>Gloor, Peter A</name>
</author>
<id>https://hdl.handle.net/1721.1/164231</id>
<updated>2026-04-14T03:30:27Z</updated>
<published>2024-03-03T00:00:00Z</published>
<summary type="text">Your body tells more than words – predicting perceived meeting productivity through body signals
Zeyda, Maximilian; Stracke, Selina; Knipfer, Kristin; Gloor, Peter A
The productivity of work meetings is mostly assessed through post-hoc questionnaires. These questionnaires are impractical as they require additional time after the meeting has ended. Thus, measuring meeting productivity in a non-intrusive manner is of practical and theoretical importance. Extending research on physiological arousal and the healthy physiological variability thesis to the context of work meetings, we take a novel approach and investigate whether physiological arousal and the variability in implicit body signals of meeting participants (heart rate, arm movements, and speech intensity) can be accurate predictors of perceived meeting productivity. In a preliminary field study, we used smartwatches and tracked the body signals of 16 team members in 26 team meetings. The perceived meeting productivity was assessed at the end of the meetings. Partly supporting our assumptions, multilevel analysis showed that the variance in arm acceleration was a significant predictor of perceived meeting productivity. Further, using a random forest classifier, we accurately predicted perceived meeting productivity in roughly 60% of the cases with body signals. This study adds to previous work on meeting effectiveness by tapping into the potential of wearables to provide valid information about perceived meeting productivity. Cultivating our findings, we discuss lessons learned for future research.
</summary>
<dc:date>2024-03-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Phonon Sampling Method for Inelastic Thermal Neutron Scattering Events</title>
<link href="https://hdl.handle.net/1721.1/164230" rel="alternate"/>
<author>
<name>Trainer, Amelia</name>
</author>
<author>
<name>Forget, Benoit</name>
</author>
<id>https://hdl.handle.net/1721.1/164230</id>
<updated>2026-04-14T03:30:27Z</updated>
<published>2023-08-03T00:00:00Z</published>
<summary type="text">Phonon Sampling Method for Inelastic Thermal Neutron Scattering Events
Trainer, Amelia; Forget, Benoit
Accurate representation of thermal neutron scattering in Monte Carlo transport simulations requires that the molecular vibrations of the target material be accounted for. Historically, this has been achieved by precomputing large multidimensional tables that are a function of temperature and the cosine of the scattering angle, as well as incoming and outgoing neutron energy. Most commonly used sampling techniques for thermal neutron scattering rely on large multidimensional tables, where higher resolution results in an increase in required memory and attempts to reduce memory can result in grid coarseness errors. An alternative sampling method is introduced here that is a significant departure from precomputed tables and instead relies on a more physical model of the scattering behavior. The phonon sampling method classifies neutron scattering events by the number of phonons excited/de-excited during the scattering collision. In doing so, energy exchange may be obtained via rejection sampling, and an analytical representation of the momentum exchange is obtained. This sampling method has been tested on graphite, yttrium hydride, and uranium nitride, and preliminary implementation of the phonon sampling method shows accurate results for angular and energy distributions, though resulting in up to a 40% slowdown in overall calculation time. This notable slowdown is countered, however, by a large reduction in storage (over 99% reduction compared to standard multidimensional tables).
</summary>
<dc:date>2023-08-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Assessment of Engineering Turbulence Models in Buoyant Diabatic Turbulent Flow</title>
<link href="https://hdl.handle.net/1721.1/164229" rel="alternate"/>
<author>
<name>Wiser, Ralph</name>
</author>
<author>
<name>Baglietto, Emilio</name>
</author>
<id>https://hdl.handle.net/1721.1/164229</id>
<updated>2026-04-14T03:30:24Z</updated>
<published>2024-07-02T00:00:00Z</published>
<summary type="text">Assessment of Engineering Turbulence Models in Buoyant Diabatic Turbulent Flow
Wiser, Ralph; Baglietto, Emilio
Turbulent heat transfer in buoyancy-dominated flows is a challenging problem for computational fluid dynamics (CFD). Many authors attribute model error in these conditions to the Reynolds analogy. We leverage a brand-new direct numerical simulation database to evaluate the performance of several popular turbulence models in buoyant diabatic channel flow. We find that heat transfer results are relatively accurate, with a Nusselt number error less than 20%. However, the turbulent flow solution is very inaccurate, with wall shear overpredicted by up to 100%. This indicates significant turbulence model error in such flows. We determined that the dominant sources of model error are missing physics in the algebraic Reynolds stress framework and the simple buoyancy production term used in industrial CFD. We suggest that future modeling efforts focus on these two sources of model error. We demonstrate that the Reynolds analogy is not the dominant source of model error.
</summary>
<dc:date>2024-07-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>The insurgent smart city: How a social movement created an alternative imaginary of the smart city</title>
<link href="https://hdl.handle.net/1721.1/164228" rel="alternate"/>
<author>
<name>Stokols, Andrew</name>
</author>
<id>https://hdl.handle.net/1721.1/164228</id>
<updated>2026-04-14T03:30:25Z</updated>
<published>2023-07-17T00:00:00Z</published>
<summary type="text">The insurgent smart city: How a social movement created an alternative imaginary of the smart city
Stokols, Andrew
Urban scholars have critiqued smart cities for their association with neoliberal governance, narrow focus on quantifiable aspects of urban systems, and failure to incorporate citizens’ needs or aspirations. The “smart city” remains a contested concept and as such is subject to reappropriation. Here, I analyze the case of an urban social movement, the 2019–2020 Hong Kong Anti-ELAB protests, as an alternative, “insurgent smart city.” Following from an earlier network analysis of Telegram channels used during the protests, I show how the communications system underpinning much of the protest action simultaneously enabled coordination while also remaining open to grassroots decision-making and innovations of new protest formats as the movement responded to countertactics of the state and police. Telegram channels linked neighborhood-based organizing to the citywide movement. These actions not only emulated but also inverted top-down visions of a total urban information system underpinning many smart city projects. Framing the Hong Kong Anti-ELAB protests as an insurgent smart city offers an alternative sociotechnical imaginary of what smart cities could be, and raises possibilities for an “insurgent digital citizenship” as an alternative to both state and platform-mediated forms of digital citizenship.
</summary>
<dc:date>2023-07-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>The evolution of global cybersecurity norms in the digital age: A longitudinal study of the cybersecurity norm development process</title>
<link href="https://hdl.handle.net/1721.1/164227" rel="alternate"/>
<author>
<name>Madnick, Benjamin</name>
</author>
<author>
<name>Huang, Keman</name>
</author>
<author>
<name>Madnick, Stuart</name>
</author>
<id>https://hdl.handle.net/1721.1/164227</id>
<updated>2026-04-14T03:30:22Z</updated>
<published>2024-05-03T00:00:00Z</published>
<summary type="text">The evolution of global cybersecurity norms in the digital age: A longitudinal study of the cybersecurity norm development process
Madnick, Benjamin; Huang, Keman; Madnick, Stuart
Developing cybersecurity norms and global normative cybersecurity behaviors play an increasingly critical role in global cybersecurity governance. This paper takes a longitudinal approach to analyze cybersecurity norms development activities during the period 1997–2020. A total of 206 individual cases were collected, and 233 individual cybersecurity norms were identified and compiled into 25 subject categories. Categorizing the norm subjects alongside the frequency of cases and norms identified each year allowed for a longitudinal view of cyber norm activities and the evolution in developments over these years. This examination enables us to categorize cybersecurity norms, including their dynamic focus and evolution patterns. By studying those viewed as “successful,” we gain guidance regarding the construction of global cybersecurity governance in the digital age.
</summary>
<dc:date>2024-05-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Anthropology Has One Job (On Genocide in the United States)</title>
<link href="https://hdl.handle.net/1721.1/164226" rel="alternate"/>
<author>
<name>Lowry, David Shane</name>
</author>
<id>https://hdl.handle.net/1721.1/164226</id>
<updated>2026-04-14T03:30:24Z</updated>
<published>2023-01-02T00:00:00Z</published>
<summary type="text">Anthropology Has One Job (On Genocide in the United States)
Lowry, David Shane
In an introductory anthropology course, the instructor might provide a definition of anthropology similar to this: “Anthropology is the most scientific of the humanities, and it is the most humanistic of the sciences.” If something like that is said, it stems from a statement in Anthropology, a 1964 book by famed anthropologist Eric Wolf in which he attempted to define the discipline. Wolf’s approach came at a time when many anthropologists were attempting to intervene in the historical telling of the world.Footnote1 In particular, Wolf argued that non-Europeans were also participants in global, colonial processes. The value of Wolf’s voice—indeed, the value of most anthropology at the time—was that it offered a wide-scale view of human events for which the anthropologist was merely an observer, hence not responsible.
</summary>
<dc:date>2023-01-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Online Bidding under RoS Constraints without Knowing the Value</title>
<link href="https://hdl.handle.net/1721.1/164225" rel="alternate"/>
<author>
<name>Vijayan, Sushant</name>
</author>
<author>
<name>Feng, Zhe</name>
</author>
<author>
<name>Padmanabhan, Swati</name>
</author>
<author>
<name>Shanmugam, Karthikeyan</name>
</author>
<author>
<name>Suggala, Arun</name>
</author>
<author>
<name>Wang, Di</name>
</author>
<id>https://hdl.handle.net/1721.1/164225</id>
<updated>2025-12-06T03:09:02Z</updated>
<published>2025-04-22T00:00:00Z</published>
<summary type="text">Online Bidding under RoS Constraints without Knowing the Value
Vijayan, Sushant; Feng, Zhe; Padmanabhan, Swati; Shanmugam, Karthikeyan; Suggala, Arun; Wang, Di
We consider the problem of bidding in online advertising, where an advertiser aims to maximize value while adhering to budget and Return-on-Spend (RoS) constraints. Unlike prior work that assumes knowledge of the value generated by winning each impression (e.g., conversions), we address the more realistic setting where the advertiser must simultaneously learn the optimal bidding strategy and the value of each impression opportunity. This introduces a challenging exploration-exploitation dilemma: the advertiser must balance exploring different bids to estimate impression values with exploiting current knowledge to bid effectively. To address this, we propose a novel Upper Confidence Bound (UCB)-style algorithm that carefully manages this trade-off. Via a rigorous theoretical analysis, we prove that our algorithm achieves Õ(₲T log(|B|T) ) regret and constraint violation, where T is the number of bidding rounds and B is the domain of possible bids. This establishes the first optimal regret and constraint violation bounds for bidding in the online setting with unknown impression values. Moreover, our algorithm is computationally efficient and simple to implement. We validate our theoretical findings through experiments on synthetic data, demonstrating that our algorithm exhibits strong empirical performance compared to existing approaches.
WWW ’25, April 28–May 2, 2025, Sydney, NSW, Australia.
</summary>
<dc:date>2025-04-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tactile Vega-Lite: Rapidly Prototyping Tactile Charts with Smart Defaults</title>
<link href="https://hdl.handle.net/1721.1/164224" rel="alternate"/>
<author>
<name>Chen, Mengzhu (Katie)</name>
</author>
<author>
<name>Pedraza Pineros, Isabella</name>
</author>
<author>
<name>Satyanarayan, Arvind</name>
</author>
<author>
<name>Zong, Jonathan</name>
</author>
<id>https://hdl.handle.net/1721.1/164224</id>
<updated>2025-12-06T03:09:11Z</updated>
<published>2025-04-25T00:00:00Z</published>
<summary type="text">Tactile Vega-Lite: Rapidly Prototyping Tactile Charts with Smart Defaults
Chen, Mengzhu (Katie); Pedraza Pineros, Isabella; Satyanarayan, Arvind; Zong, Jonathan
Tactile charts are essential for conveying data to blind and low vision (BLV) readers but are difficult for designers to construct. Non-expert designers face barriers to entry due to complex guidelines, while experts struggle with fragmented and time-consuming workflows that involve extensive customization. Inspired by formative interviews with expert tactile graphics designers, we created Tactile Vega-Lite (TVL): an extension of Vega-Lite that offers tactile-specific abstractions and synthesizes existing guidelines into a series of smart defaults. Predefined stylistic choices enable non-experts to produce guideline-compliant tactile charts quickly. Expert users can override defaults to tailor customizations for their intended audience. In a user study with 12 tactile graphics creators, we show that Tactile Vega-Lite enhances flexibility and consistency by automating tasks like adjusting spacing and translating braille while accelerating iterations through pre-defined textures and line styles. Through expert critique, we also learn more about tactile chart design best practices and design decisions.
CHI ’25, Yokohama, Japan
</summary>
<dc:date>2025-04-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Toward Everyday Perceptual and Physiological Augmentation</title>
<link href="https://hdl.handle.net/1721.1/164223" rel="alternate"/>
<author>
<name>Tao, Yujie</name>
</author>
<author>
<name>Gemicioglu, Tan</name>
</author>
<author>
<name>Chin, Sam</name>
</author>
<author>
<name>Huang, Bingjian</name>
</author>
<author>
<name>Brooks, Jas</name>
</author>
<author>
<name>Follmer, Sean</name>
</author>
<author>
<name>Lopes, Pedro</name>
</author>
<author>
<name>Nanayakkara, Suranga</name>
</author>
<id>https://hdl.handle.net/1721.1/164223</id>
<updated>2025-12-06T03:09:17Z</updated>
<published>2025-09-27T00:00:00Z</published>
<summary type="text">Toward Everyday Perceptual and Physiological Augmentation
Tao, Yujie; Gemicioglu, Tan; Chin, Sam; Huang, Bingjian; Brooks, Jas; Follmer, Sean; Lopes, Pedro; Nanayakkara, Suranga
Human senses are fundamental to how we interpret and interact with the world. Computing devices are increasingly coupled with the human sensory system through interfaces such as smart glasses, earbuds, and wristbands. This opens up opportunities to dynamically mediate, modify, and augment perceptual experiences and physiological processes through multisensory stimulation. These devices go beyond assistive technologies designed for individuals with sensory impairments (e.g., hearing aids) and are now available for everyday use. Applications range from enriching immersive entertainment experiences to supporting well-being through multisensory interventions.&#13;
The UIST community has been a key venue for introducing many proof-of-concept prototypes in multisensory stimulation. However, gaps remain in systematically understanding how such technologies can be designed, studied, and contextualized in long-term, everyday use. This workshop will examine barriers to transitioning prototypes from proof-of-concepts into systems for real-world use. The session will feature keynote talks, demo sessions, and an interactive device-swap activity where participants exchange and wear different devices during the afternoon session, and conclude with an open discussion to develop implementation frameworks.
UIST Adjunct ’25, Busan, Republic of Korea
</summary>
<dc:date>2025-09-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>GyFoam: Fabricating Lattice Foam with Customizable Stiffness through Uniform Expansion</title>
<link href="https://hdl.handle.net/1721.1/164222" rel="alternate"/>
<author>
<name>Wang, Guanyun</name>
</author>
<author>
<name>Chen, Haotian</name>
</author>
<author>
<name>Wang, Yufeng</name>
</author>
<author>
<name>Li, Songyun</name>
</author>
<author>
<name>Tao, Yue</name>
</author>
<author>
<name>Qi, Fanke</name>
</author>
<author>
<name>Cao, Lizhuo</name>
</author>
<author>
<name>Jin, Xiao</name>
</author>
<author>
<name>Tao, Ye</name>
</author>
<author>
<name>Li, Jiaji</name>
</author>
<id>https://hdl.handle.net/1721.1/164222</id>
<updated>2025-12-06T03:09:34Z</updated>
<published>2025-09-27T00:00:00Z</published>
<summary type="text">GyFoam: Fabricating Lattice Foam with Customizable Stiffness through Uniform Expansion
Wang, Guanyun; Chen, Haotian; Wang, Yufeng; Li, Songyun; Tao, Yue; Qi, Fanke; Cao, Lizhuo; Jin, Xiao; Tao, Ye; Li, Jiaji
We present GyFoam, a fabrication method integrating foam material with lattice structure to enable controlled and uniform expansion, which supports high-quality forming in appearance and customizable stiffness in function, using standard 3D printers, filaments, commercially available Thermo-Expandable Microspheres and silicone. To achieve customizable stiffness, we propose two methods: modifying material concentration and adjusting lattice structural parameters. Additionally, we propose three shape control strategies for creating complex shapes: bending, wavy edges, and internal doming. Furthermore, a user-friendly design tool is established for users to construct lattice structures, preview basic deformation, and generate mold models for printing. Finally, through a series of applications, we validate GyFoam’s practical usage of fabricating large objects, wearable products, enabling flexible interactions and creating aesthetic designs.
UIST ’25, Busan, Republic of Korea
</summary>
<dc:date>2025-09-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>EmbroChet: A Hybrid Textile Fabrication Approach for 3D Personalized Handicraft via Heat-Shrinking</title>
<link href="https://hdl.handle.net/1721.1/164221" rel="alternate"/>
<author>
<name>Wang, Guanyun</name>
</author>
<author>
<name>Wang, Zhiqi</name>
</author>
<author>
<name>Li, Fanyu</name>
</author>
<author>
<name>Liu, Qinyang</name>
</author>
<author>
<name>Dong, Tianshu</name>
</author>
<author>
<name>Hong, Zixiang</name>
</author>
<author>
<name>Li, Xinyi</name>
</author>
<author>
<name>Zhu, Kuangqi</name>
</author>
<author>
<name>Li, Jiaji</name>
</author>
<author>
<name>Zhao, Xiaoliang</name>
</author>
<author>
<name>Tao, Ye</name>
</author>
<id>https://hdl.handle.net/1721.1/164221</id>
<updated>2025-12-06T03:09:28Z</updated>
<published>2025-09-27T00:00:00Z</published>
<summary type="text">EmbroChet: A Hybrid Textile Fabrication Approach for 3D Personalized Handicraft via Heat-Shrinking
Wang, Guanyun; Wang, Zhiqi; Li, Fanyu; Liu, Qinyang; Dong, Tianshu; Hong, Zixiang; Li, Xinyi; Zhu, Kuangqi; Li, Jiaji; Zhao, Xiaoliang; Tao, Ye
We propose EmbroChet, a hybrid approach that bridges digital fabrication and textile craftsmanship, empowering individuals unfamiliar with intricate craft techniques to design and fabricate 3D textile handicrafts intuitively. EmbroChet allows the creation of handicrafts by embroidering chain stitches (a fundamental embroidery technique) onto a heat-shrinkable film, which subsequently self-transforms from a 2D composite to a 3D textile through a freely controllable heating triggering process. Through a single stitch type, the method enables custom designs and intricate geometries to be achieved without complex manual skills that often requires expertise between different stitch knowledge. To better demonstrate EmbroChet, we propose a design tool that includes shape-changing libraries to assist users in customizing 3D shapes. The evaluation demonstrates its unique strength in balancing geometric complexity and textile softness. Furthermore, our workshop verifies the feasibility of EmbroChet, exploring its potential for personalized textile fabrication, and synergizing the precision of digital fabrication with the tactile artistry of textile craftsmanship.
UIST ’25, Busan, Republic of Korea
</summary>
<dc:date>2025-09-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Meta-antenna: Mechanically Frequency Reconfigurable Metamaterial Antennas</title>
<link href="https://hdl.handle.net/1721.1/164220" rel="alternate"/>
<author>
<name>AlAlawi, Marwa</name>
</author>
<author>
<name>Zheng, Regina</name>
</author>
<author>
<name>Ahn, Sooyeon</name>
</author>
<author>
<name>Yan, Katherine</name>
</author>
<author>
<name>Sethapakdi, Ticha</name>
</author>
<author>
<name>Zhu, Junyi</name>
</author>
<author>
<name>Mueller, Stefanie</name>
</author>
<id>https://hdl.handle.net/1721.1/164220</id>
<updated>2025-12-06T03:09:24Z</updated>
<published>2025-09-27T00:00:00Z</published>
<summary type="text">Meta-antenna: Mechanically Frequency Reconfigurable Metamaterial Antennas
AlAlawi, Marwa; Zheng, Regina; Ahn, Sooyeon; Yan, Katherine; Sethapakdi, Ticha; Zhu, Junyi; Mueller, Stefanie
We introduce Meta-antenna, a design and fabrication pipeline for creating frequency reconfigurable antennas while making use of a single type of mechanical metamaterial structure. Unlike traditional static antenna systems with fixed radiation patterns and frequency responses per geometry, Meta-antenna leverages mechanical reconfiguration to alter the radiation and geometry characteristics of the antenna, making it more versatile for sensing and communication. Meta-antenna provides a design space of resonance frequency from 500 MHz to 6.3 GHz (≥ 10dB) upon the structure’s compression, bending, or rotation. Additionally, we provide an Ansys-based editor that allows users to generate metamaterial antenna geometries and simulate their resonance frequency. We also provide a code template for Meta-antenna based sensing interactions. Our technical evaluation demonstrates that our fabricated Meta-antenna structures remain functional even after 10,000 compression cycles. Finally, we contribute three example applications showcasing Meta-antenna’s potential in adaptive personal devices, smart home systems, and tangible user interfaces.
UIST ’25, Busan, Republic of Korea
</summary>
<dc:date>2025-09-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Computational Tailor-Making for Personalized, Shape-changing, and Sustainable Fabrics</title>
<link href="https://hdl.handle.net/1721.1/164219" rel="alternate"/>
<author>
<name>Narumi, Koya</name>
</author>
<author>
<name>Hirose, Yuichi</name>
</author>
<author>
<name>Lee, Hsuanling</name>
</author>
<author>
<name>Larsson, Maria</name>
</author>
<author>
<name>He, Liang</name>
</author>
<author>
<name>Leake, Mackenzie</name>
</author>
<author>
<name>Forman, Jack</name>
</author>
<author>
<name>Farahi, Behnaz</name>
</author>
<author>
<name>Yao, Lining</name>
</author>
<author>
<name>Igarashi, Takeo</name>
</author>
<id>https://hdl.handle.net/1721.1/164219</id>
<updated>2025-12-06T03:09:20Z</updated>
<published>2025-09-27T00:00:00Z</published>
<summary type="text">Computational Tailor-Making for Personalized, Shape-changing, and Sustainable Fabrics
Narumi, Koya; Hirose, Yuichi; Lee, Hsuanling; Larsson, Maria; He, Liang; Leake, Mackenzie; Forman, Jack; Farahi, Behnaz; Yao, Lining; Igarashi, Takeo
Fabrics are fundamental elements of our daily lives, which are woven, knitted, or embroidered into diverse products like clothing and furniture. Recent advances in materials science and digital fabrication have enabled us to fabricate personalized and responsive fabric products computationally and interactively, which we call “computational tailor-making.” In this workshop, we will build an interdisciplinary network of researchers on computational tailor-making and discuss (1) computational fabric design, (2) novel fabric fabrication tools, (3) shape-changing fabrics, and (4) sustainable fabric production, from the viewpoint of HCI. The workshop session will help attendees build a shared vision, recognize potential challenges, find unexpected solutions and ideas, collaborate beyond disciplines, and explore the possible connection to industries.
UIST Adjunct ’25, Busan, Republic of Korea
</summary>
<dc:date>2025-09-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ori-TENG: 3D Printed Origami Tessellations as Triboelectric Nanogenerators for Self-powered Sensing and Energy Harvesting</title>
<link href="https://hdl.handle.net/1721.1/164218" rel="alternate"/>
<author>
<name>AlAlawi, Marwa</name>
</author>
<author>
<name>Wang, Kexin</name>
</author>
<author>
<name>Zheng, Regina</name>
</author>
<author>
<name>Chan, Adelene</name>
</author>
<author>
<name>Feick, Martin</name>
</author>
<author>
<name>Mueller, Stefanie</name>
</author>
<id>https://hdl.handle.net/1721.1/164218</id>
<updated>2025-12-06T03:09:19Z</updated>
<published>2025-09-27T00:00:00Z</published>
<summary type="text">Ori-TENG: 3D Printed Origami Tessellations as Triboelectric Nanogenerators for Self-powered Sensing and Energy Harvesting
AlAlawi, Marwa; Wang, Kexin; Zheng, Regina; Chan, Adelene; Feick, Martin; Mueller, Stefanie
We introduce Ori-TENG, a design and fabrication framework for 3D&#13;
printed origami tessellations that function as triboelectric sensors&#13;
and energy harvesters. Ori-TENG structures are 3D printed flat in&#13;
a single step, then folded, with internal electrical routing optimized&#13;
for both folding mechanics and triboelectric performance.
UIST Adjunct ’25, Busan, Republic of Korea
</summary>
<dc:date>2025-09-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>GreenMix: Energy-Efficient Serverless Computing via Randomized Sketching on Asymmetric Multi-Cores</title>
<link href="https://hdl.handle.net/1721.1/164217" rel="alternate"/>
<author>
<name>Basu Roy, Rohan</name>
</author>
<author>
<name>Patel, Tirthak</name>
</author>
<author>
<name>Li, Baolin</name>
</author>
<author>
<name>Samsi, Siddharth</name>
</author>
<author>
<name>Gadepally, Vijay</name>
</author>
<author>
<name>Tiwari, Devesh</name>
</author>
<id>https://hdl.handle.net/1721.1/164217</id>
<updated>2025-12-06T03:09:49Z</updated>
<published>2025-11-15T00:00:00Z</published>
<summary type="text">GreenMix: Energy-Efficient Serverless Computing via Randomized Sketching on Asymmetric Multi-Cores
Basu Roy, Rohan; Patel, Tirthak; Li, Baolin; Samsi, Siddharth; Gadepally, Vijay; Tiwari, Devesh
GreenMix is motivated by the renewed interest in asymmetric multi-core processors and the emergence of the serverless computing model. Asymmetric multi-cores offer better energy and performance trade-offs by placing different core types on the same die. However, existing serverless scheduling techniques do not leverage these benefits. GreenMix is the first serverless work to reduce energy and serverless keep-alive costs while meeting QoS targets by leveraging asymmetric multi-cores. GreenMix employs randomized sketching, tailored for serverless execution and keep-alive, to perform within 10% of the optimal solution in terms of energy efficiency and keep-alive cost reduction. GreenMix’s effectiveness is demonstrated through evaluations on clusters of ARM big.LITTLE and Intel Alder Lake asymmetric processors. It outperforms competing state-of-the-art schedulers, offering a novel approach for energy-efficient serverless computing.
SC ’25, St Louis, MO, USA
</summary>
<dc:date>2025-11-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Scalable and Low Power Localization for Underwater Robots</title>
<link href="https://hdl.handle.net/1721.1/164216" rel="alternate"/>
<author>
<name>Afzal, Sayed Saad</name>
</author>
<author>
<name>Rademacher, Jack</name>
</author>
<author>
<name>Chen, Weitung</name>
</author>
<author>
<name>Wang, Purui</name>
</author>
<author>
<name>Adib, Fadel</name>
</author>
<id>https://hdl.handle.net/1721.1/164216</id>
<updated>2025-12-06T03:09:46Z</updated>
<published>2025-11-21T00:00:00Z</published>
<summary type="text">Scalable and Low Power Localization for Underwater Robots
Afzal, Sayed Saad; Rademacher, Jack; Chen, Weitung; Wang, Purui; Adib, Fadel
Localization is a critical task for underwater robots, yet today’s underwater localization systems are limited by their accuracy, scalability, and/or energy consumption (i.e., longevity).&#13;
We present the design, implementation, and evaluation of&#13;
EchoBLUE– an accurate, scalable, and low-power localization system for underwater robots.&#13;
In EchoBLUE, an underwater robot transmits SONARstyle (FMCW) signals, and leverages ultra-low power underwater backscatter nodes as location anchors. EchoBLUE’s&#13;
design introduces two key innovations. The first is a novel&#13;
doppler compensation mechanism that enables it to accurately self-localize under mobility: the technique employs a&#13;
cross-chirp mechanism that exploits the quad-band nature of&#13;
the resulting backscatter response to overcome the rangedoppler ambiguity. Second, it introduces the first semi-active&#13;
retrodirective underwater backscatter design and uses it for&#13;
location anchors; this design achieves wide bandwidth to&#13;
backscatter the full FMCW signal, enabling fine-grained localization.&#13;
We implemented a proof of concept prototype of EchoBLUE&#13;
by building a base station mounted on a BlueROV2 underwater robot and custom-designed low-power retrodirective&#13;
location anchors deployed in a pool. Our evaluation across&#13;
700 real-world trials demonstrates that EchoBLUE achieves a&#13;
median 3D localization accuracy of 28 cm and 90th percentile&#13;
of 48 cm. Moreover, these anchors consume only 740 &#120583;&#119882; for&#13;
semi-active backscatter, paving the way for truly low-power&#13;
and scalable underwater localization.
</summary>
<dc:date>2025-11-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>A polyurethane-urea elastomer at low to extreme strain rates</title>
<link href="https://hdl.handle.net/1721.1/164215" rel="alternate"/>
<author>
<name>Lee, Jaehee</name>
</author>
<author>
<name>Veysset, David</name>
</author>
<author>
<name>Hsieh, Alex J</name>
</author>
<author>
<name>Rutledge, Gregory C</name>
</author>
<author>
<name>Cho, Hansohl</name>
</author>
<id>https://hdl.handle.net/1721.1/164215</id>
<updated>2025-12-06T03:09:59Z</updated>
<published>2023-09-15T00:00:00Z</published>
<summary type="text">A polyurethane-urea elastomer at low to extreme strain rates
Lee, Jaehee; Veysset, David; Hsieh, Alex J; Rutledge, Gregory C; Cho, Hansohl
A finite strain nonlinear constitutive model is presented to study the extreme mechanical behavior of a polyurethane-urea (PUU) well suited for many engineering applications. The micromechanically- and thermodynamically based constitutive model captures salient features in resilience and dissipation in the material from low to extreme strain rates. The extreme deformation features are further elucidated by laser-induced micro-particle impact tests for the material, where an ultrafast strain rate ( &gt; 1 0 6 s−1) incurs. Numerical simulations for the strongly inhomogeneous deformation events are in good agreement with the experimental data, supporting the predictive capabilities of the constitutive model for the extreme deformation features of the PUU material over at least 9 orders of magnitude in strain rates ( 1 0 − 3 to 1 0 6 s−1).
</summary>
<dc:date>2023-09-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Molecular simulation of flow-enhanced nucleation of polyethylene crystallites in biaxial flows</title>
<link href="https://hdl.handle.net/1721.1/164214" rel="alternate"/>
<author>
<name>Gangal, Chinmay S</name>
</author>
<author>
<name>Rutledge, Gregory C</name>
</author>
<id>https://hdl.handle.net/1721.1/164214</id>
<updated>2025-12-06T03:09:53Z</updated>
<published>2024-04-17T00:00:00Z</published>
<summary type="text">Molecular simulation of flow-enhanced nucleation of polyethylene crystallites in biaxial flows
Gangal, Chinmay S; Rutledge, Gregory C
Flow-enhanced nucleation (FEN) of n-pentacontahectane (C150) under biaxial extensional flows of varying strain rate ratios is studied using nonequilibrium molecular dynamics simulation. The nucleation rates thus calculated are used to test previously published FEN models based on invariants of the conformation tensor of Kuhn segments and the extra stress tensor. Models based on the conformation tensor provide a more accurate description of FEN observed in biaxial flow simulations than those based on the extra stress tensor. In addition, the formation of nematic domains previously reported to be stabilized by shear or extensional flow is absent in equibiaxial flows. However, such domains do form in non-equibiaxial flows, and nucleation occurs in these domains preferentially. The shape and orientation of nuclei formed under biaxial flows of various strengths and strain rate ratios are also reported.
</summary>
<dc:date>2024-04-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cholesterol Nanofiber Patches with Sustainable Oil Delivery Eliminate Inflammation in Atopic Skin</title>
<link href="https://hdl.handle.net/1721.1/164213" rel="alternate"/>
<author>
<name>Sroczyk, Ewa A</name>
</author>
<author>
<name>Tarasiuk, Aleksandra</name>
</author>
<author>
<name>Talar, Marcin</name>
</author>
<author>
<name>Rutledge, Gregory C</name>
</author>
<author>
<name>Makaro, Adam</name>
</author>
<author>
<name>Misztal, Zofia</name>
</author>
<author>
<name>Wołyniak, Maria</name>
</author>
<author>
<name>Berniak, Krzysztof</name>
</author>
<author>
<name>Sałaga, Maciej</name>
</author>
<author>
<name>Fichna, Jakub</name>
</author>
<author>
<name>Stachewicz, Urszula</name>
</author>
<id>https://hdl.handle.net/1721.1/164213</id>
<updated>2025-12-06T03:10:01Z</updated>
<published>2024-07-12T00:00:00Z</published>
<summary type="text">Cholesterol Nanofiber Patches with Sustainable Oil Delivery Eliminate Inflammation in Atopic Skin
Sroczyk, Ewa A; Tarasiuk, Aleksandra; Talar, Marcin; Rutledge, Gregory C; Makaro, Adam; Misztal, Zofia; Wołyniak, Maria; Berniak, Krzysztof; Sałaga, Maciej; Fichna, Jakub; Stachewicz, Urszula
Atopic skin is dry and itchy and lacks integrity. Impaired skin barrier results from altered lipid composition of the skin. A crucial skin lipid, cholesterol, provides flexibility and homeostasis of the cell membranes' lipid bilayer. Cholesterol-based creams and natural oils, especially blackcurrant seed oil, are beneficial for skin care as they hydrate the skin and improve its integrity. The major atopic symptom, skin dryness, can be overcome by the application of porous patches enhanced with cholesterol and natural oil. The base of the patches is constructed of polyimide (PI) nanofibers with cholesterol coatings and externally added blackcurrant seed oil. The presence of cholesterol in PI mats hinders the passage of oil through the patches to the skin, resulting in sustained and prolonged skin hydration. The theoretical and numerical investigations of oil dynamics in porous mats confirmed the experimental results, showing a prolonged skin hydration effect up to 6 h. Additionally, as demonstrated by in vivo tests on atopic mice, cholesterol patches lower serum immunoglobulin E levels and expression of proinflammatory cytokines in the skin, thereby accelerating skin healing. Our results hold great promise for the long-term application of the patches in atopic dermatitis treatment.
</summary>
<dc:date>2024-07-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Polls and the U.S. Presidential Election in 2020 …. and 2024</title>
<link href="https://hdl.handle.net/1721.1/164212" rel="alternate"/>
<author>
<name>Barnett, Arnold</name>
</author>
<author>
<name>Sarfati, Arnaud</name>
</author>
<id>https://hdl.handle.net/1721.1/164212</id>
<updated>2025-12-06T03:09:55Z</updated>
<published>2023-05-30T00:00:00Z</published>
<summary type="text">The Polls and the U.S. Presidential Election in 2020 …. and 2024
Barnett, Arnold; Sarfati, Arnaud
Arguably, the single greatest determinant of U.S. public policy is the identity of the president. And if trusted, polls not only provide forecasts about presidential-election outcomes but can act to shape those outcomes. Looking ahead to the 2024 U.S. presidential election and recognizing that polls before the 2020 presidential election were sharply criticized, we consider whether such harsh assessments are warranted. Initially, we explore whether such polls as processed by the sophisticated aggregator FiveThirtyEight successfully forecast actual 2020 state-by-state outcomes. We evaluate FiveThirtyEight’s forecasts using customized statistical methods not used previously, methods that take account of likely correlations among election outcomes in similar states. We find that, taken together, the pollsters and FiveThirtyEight did an excellent job in predicting who would win in individual states, even those “tipping point” states where forecasting is more difficult. However, we also find that FiveThirtyEight underestimated Donald Trump’s vote shares by state to a modest but statistically significant extent. We further consider how the polls performed when the more primitive aggregator Real Clear Politics combined their results, and then how well single statewide polls performed without aggregation. It emerges that both Real Clear Politics and the individual polls fared surprisingly well.
</summary>
<dc:date>2023-05-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Profession’s Vanguards: Arab Architects and Regional Architectural Exchange, 1900–50</title>
<link href="https://hdl.handle.net/1721.1/164211" rel="alternate"/>
<author>
<name>Abusaada, Nadi</name>
</author>
<id>https://hdl.handle.net/1721.1/164211</id>
<updated>2025-12-06T03:09:58Z</updated>
<published>2023-07-19T00:00:00Z</published>
<summary type="text">The Profession’s Vanguards: Arab Architects and Regional Architectural Exchange, 1900–50
Abusaada, Nadi
Writings on architecture in the Middle East during the first half of the twentieth century have often focused on the legacies of colonial architects and planners in shaping Middle Eastern cities and built environments. Contrarily, this article focuses on the overlooked history of the first milieu of trained Arab architects in Middle East, focusing on Palestine, Syria, Lebanon and Egypt. Examining unstudied historical materials and archives, it maps out the trajectories of individual architects as well as the architectural profession more generally in this period of rapid change. It is divided into three main sections that highlight this: first, architecture’s transition from the Ottoman guild system to its professionalisation by the turn of the century; second, the mobility of architectural knowledge and expertise in the Arab region following the First World War; finally, the development of a new institutionalised architectural culture that sought to cultivate bonds between Arab architects not only in their individual countries, but also regionally throughout the Arab world towards the mid-twentieth century.
</summary>
<dc:date>2023-07-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fossil fuel divestment and public climate change policy preferences: an experimental test in three countries</title>
<link href="https://hdl.handle.net/1721.1/164210" rel="alternate"/>
<author>
<name>Schwartz, Joshua A.</name>
</author>
<author>
<name>Lendway, Paul</name>
</author>
<author>
<name>Nuri, Abolfazl</name>
</author>
<id>https://hdl.handle.net/1721.1/164210</id>
<updated>2025-12-06T03:10:03Z</updated>
<published>2023-02-26T00:00:00Z</published>
<summary type="text">Fossil fuel divestment and public climate change policy preferences: an experimental test in three countries
Schwartz, Joshua A.; Lendway, Paul; Nuri, Abolfazl
Divestment is a prominent strategy championed by activists to induce positive social change. For example, the current fossil fuel divestment movement includes over 1,500 institutions that control $40 trillion in assets. A primary pathway through which divestment is theorized to be effective is by influencing public beliefs and policy preferences, thus pressuring policymakers to take action. However, prior research only tests this argument via qualitative case studies. We assess the impact of exposure to information about fossil fuel divestment on public opinion through the use of national survey experiments in three major greenhouse gas emitters: the U.S., India, and South Africa. We find surprisingly little evidence that exposure to information about the fossil fuel divestment movement can increase public support for policies that address climate change. Our findings suggest that divestment movements may be less effective at changing beliefs and policy preferences than previously realized.
</summary>
<dc:date>2023-02-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>“Sculptress Interprets Land’s Spirit”: Elizabeth Wyn Wood, the Group of Seven, and analogy as equivalence</title>
<link href="https://hdl.handle.net/1721.1/164209" rel="alternate"/>
<author>
<name>Nikčević, Hana</name>
</author>
<id>https://hdl.handle.net/1721.1/164209</id>
<updated>2025-12-06T03:09:56Z</updated>
<published>2023-09-26T00:00:00Z</published>
<summary type="text">“Sculptress Interprets Land’s Spirit”: Elizabeth Wyn Wood, the Group of Seven, and analogy as equivalence
Nikčević, Hana
Canadian sculptor Elizabeth Wyn Wood (1903–66), best known for her modernist landscape sculptures, has since the inception of her artistic career been compared, through analogy, with the Group of Seven (fl. 1920–33), Canada’s enduringly famous and overtly nationalistic collective of modernist landscape painters. Critics claimed that Wood “achieved for sculpture what the Group of Seven achieved for painting” and, occasionally, invoked specific Group artists, dubbing Wood the “Lawren Harris of sculpture.” Analogizing across disciplines, the Wood/Group likening appears to posit a formal comparison in gendered language: the Group’s bold, decorative portrayals of the northern Ontario “wilderness” find clear visual comparands in Wood’s abstracted compositions of the same region. In this article, however, I demonstrate that the apparently visual basis for the comparison is inextricable from the textual discourse fundamental to Canadian art in the early twentieth century and beyond; it is only through analyzing this discourse that an understanding of the Wood/Group analogy can be reached. The Group ostensibly pioneered the first genuine Canadian landscape aesthetic; through immersing himself in the land, the mythology went, the Canadian artist learned to paint Canada on its own terms. This landscape artist-as-woodsman myth was a form of settler indigenization by which Canada laid cultural claim to colonized land. Analogy frames Wood as not an epigone but an equal of the Group: in producing organically, anew, a genuine Canadian landscape aesthetic for sculpture, Wood “achieved for sculpture what the Group of Seven achieved for painting”—its deployment as a medium in the service of Canada’s land claim.
</summary>
<dc:date>2023-09-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Landscape “Difficult to Describe”: The Model Village and the Capital City</title>
<link href="https://hdl.handle.net/1721.1/164208" rel="alternate"/>
<author>
<name>Springstubb, Phoebe</name>
</author>
<id>https://hdl.handle.net/1721.1/164208</id>
<updated>2025-12-06T03:09:51Z</updated>
<published>2023-03-22T00:00:00Z</published>
<summary type="text">A Landscape “Difficult to Describe”: The Model Village and the Capital City
Springstubb, Phoebe
In mid-twentieth-century Punjab, grassroots development projects sought to modernize the countryside by decentralizing power to villages. The capital city Chandigarh, built in the same period, seems to represent the opposite: a national symbol of a newly independent India’s centralized power. Yet, this article argues, rural and urban were reciprocal and volatile counterparts. Through the work of M.S. Randhawa, it reorients analysis of Chandigarh to reveal how the materiality of landscape itself was a medium for territorial planning, indelibly linking—and managing the distinctions between—city and countryside. A botanist and civil servant, Randhawa used landscape to realize modernizing agendas and to constrain social change in projects from model villages and a “bioaesthetic” plan for the city to new land-grant universities that ushered in the Green Revolution’s industrialized agriculture. His work offers a revisionist history of development’s practitioners and periodization. It shows how an uneven fabric of late-colonial rural uplift shaped the contours of postcolonial, state-directed agrarian transformation. Following the civil servant in the landscape, this article calls for the grounding of abstract theories like development and state formation in histories of their local inflections.
</summary>
<dc:date>2023-03-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Policy Search through Genetic Programming and LLM-assisted Curriculum Learning</title>
<link href="https://hdl.handle.net/1721.1/164207" rel="alternate"/>
<author>
<name>Jorgensen, Steven</name>
</author>
<author>
<name>Nadizar, Giorgia</name>
</author>
<author>
<name>Pietropolli, Gloria</name>
</author>
<author>
<name>Manzoni, Luca</name>
</author>
<author>
<name>Medvet, Eric</name>
</author>
<author>
<name>O'Reilly, Una-May</name>
</author>
<author>
<name>Hemberg, Erik</name>
</author>
<id>https://hdl.handle.net/1721.1/164207</id>
<updated>2025-12-05T04:15:40Z</updated>
<published>2025-10-31T00:00:00Z</published>
<summary type="text">Policy Search through Genetic Programming and LLM-assisted Curriculum Learning
Jorgensen, Steven; Nadizar, Giorgia; Pietropolli, Gloria; Manzoni, Luca; Medvet, Eric; O'Reilly, Una-May; Hemberg, Erik
Curriculum learning (CL) consists in using a diverse set of user-provided test cases, with varying levels of difficulty and organized in a suitable progression, for learning a policy. The quality of test cases is important to allow optimization techniques as genetic programming (GP) to solve policy search problems. In this work, we evaluate large language models (LLMs) as providers of test cases for GP-based policy search. We consider two policy search tasks, a single-player and a multi-player game, and four LLMs differing in complexity and specialization, which we prompt in order to generate suitable test cases for the two games. We experimentally assess the intrinsic quality of LLM-generated test cases and their utility when inserted in a curriculum consumed by a GP optimization. We evaluate the robustness of the approach with respect to the way cases are scheduled in curricula and with respect to the policy representation, for which we use both graphs and linear programs evolved by GP. We observe that the effectiveness of LLM-assisted CL depends on both the choice of LLM and the design of the prompting and scheduling strategies. These findings highlight important considerations for leveraging LLMs in automated curriculum design for GP-based optimization.
</summary>
<dc:date>2025-10-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Robust Biharmonic Skinning Using Geometric Fields</title>
<link href="https://hdl.handle.net/1721.1/164206" rel="alternate"/>
<author>
<name>Dodik, Ana</name>
</author>
<author>
<name>Sitzmann, Vincent</name>
</author>
<author>
<name>Solomon, Justin</name>
</author>
<author>
<name>Stein, Oded</name>
</author>
<id>https://hdl.handle.net/1721.1/164206</id>
<updated>2025-12-05T04:15:49Z</updated>
<published>2025-10-28T00:00:00Z</published>
<summary type="text">Robust Biharmonic Skinning Using Geometric Fields
Dodik, Ana; Sitzmann, Vincent; Solomon, Justin; Stein, Oded
Bounded bihramonic weights are a popular tool used to rig and deform characters for animation, to compute reduced-order simulations, and to define feature descriptors for geometry processing. They necessitate tetrahedralizing the volume bounded by the surface, introducing the possibility of meshing artifacts or tetrahedralization failure. We introduce a mesh-free and robust automatic skinning technique that generates weights comparable to the current state of the art, but works reliably even on open surfaces, triangle soups, and point clouds where current methods fail. We achieve this through the use of a specialized Lagrangian representation enabled by the advent of hardware ray-tracing, which circumvents the need for finite elements while optimizing the biharmonic energy and enforcing boundary conditions. The flexibility of our formulation allows us to integrate artistic control through weight painting during the optimization. We offer a thorough qualitative and quantitative evaluation of our method.
</summary>
<dc:date>2025-10-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>SquareLoop: Explore Optimal Authentication Block Strategy for ML</title>
<link href="https://hdl.handle.net/1721.1/164205" rel="alternate"/>
<author>
<name>Strzeszynski, Jan</name>
</author>
<author>
<name>Tong, Jianming</name>
</author>
<author>
<name>Lee, Kyungmi</name>
</author>
<author>
<name>Xiong, Nathan</name>
</author>
<author>
<name>Parashar, Angshuman</name>
</author>
<author>
<name>Emer, Joel</name>
</author>
<author>
<name>Krishna, Tushar</name>
</author>
<author>
<name>Yan, Mengjia</name>
</author>
<id>https://hdl.handle.net/1721.1/164205</id>
<updated>2025-12-05T04:15:46Z</updated>
<published>2025-10-18T00:00:00Z</published>
<summary type="text">SquareLoop: Explore Optimal Authentication Block Strategy for ML
Strzeszynski, Jan; Tong, Jianming; Lee, Kyungmi; Xiong, Nathan; Parashar, Angshuman; Emer, Joel; Krishna, Tushar; Yan, Mengjia
Off-chip memory in ML accelerators is vulnerable to both hardware&#13;
and software attack, which needs encryption and authentication.&#13;
Precise performance modeling of it requires (1) representation of&#13;
authentication blocks (AuthBlock) to cover the full design space of&#13;
shapes and orientations, and (2) precise memory behavior modeling,&#13;
as encryption and authentication mainly increase memory traffic.&#13;
This paper introduces &#119878;&#13;
2Loop, a framework that resolves these&#13;
challenges by introducing (1) flexible, all-level partitioning based&#13;
AuthBlocks for ensuring full coverage of the entire design space, (2)&#13;
a realistic layout-based memory model, and (3) an Mapping-LayoutAuthentication co-search algorithm to explore the drastic combinatorial design space to figure out optimal mapping, layout, and&#13;
AuthBlock shape choice for multi-layer workloads. SquareLoop’s&#13;
detailed memory model helps find better mapping to achieve 1.32×&#13;
speedup on ResNet18 compared to the SotA SecureLoop, and our&#13;
latency predictions are validated to within 7.3% of an RTL implementation. &#119878;&#13;
2&#119871;&#119900;&#119900;&#119901; also achieve up-to 1.08×/1.82× overall speedup for&#13;
authenticated ResNet18/MobileNet-V3 on various accelerators with&#13;
AuthBlock and Mapping co-searching. We open-source &#119878;&#13;
2Loop to&#13;
provide a powerful and validated tool for designing efficient, secure&#13;
accelerators at https://github.com/maeri-project/squareloop.
HASP 2025, Seoul, Republic of Korea
</summary>
<dc:date>2025-10-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Close Look at RMP Entry Caching and Its Security Implications in SEV-SNP</title>
<link href="https://hdl.handle.net/1721.1/164204" rel="alternate"/>
<author>
<name>Bagia, Alexis</name>
</author>
<author>
<name>Ulitzsch, Vincent</name>
</author>
<author>
<name>Trujillo, Dani?l</name>
</author>
<author>
<name>Li, Mengyuan</name>
</author>
<author>
<name>Yan, Mengjia</name>
</author>
<author>
<name>Seifert, Jean-Pierre</name>
</author>
<id>https://hdl.handle.net/1721.1/164204</id>
<updated>2025-12-05T04:15:44Z</updated>
<published>2025-10-18T00:00:00Z</published>
<summary type="text">A Close Look at RMP Entry Caching and Its Security Implications in SEV-SNP
Bagia, Alexis; Ulitzsch, Vincent; Trujillo, Dani?l; Li, Mengyuan; Yan, Mengjia; Seifert, Jean-Pierre
AMD’s Secure Encrypted Virtualization (SEV) technology is a pivotal component in AMD server processors that boosts cloud computing security. It achieves this by offering transparent memory encryption and managing keys for protecting virtual machines (VMs),&#13;
independently of the hypervisor’s trustworthiness. The latest iteration, SEV-Secure Nested Paging (SEV-SNP), introduces memory&#13;
integrity protection through a data structure called the Reverse&#13;
Map Table (RMP), which maps system physical addresses to guest&#13;
physical addresses and tracks ownership of physical pages.&#13;
The RMP is maintained in a dedicated region in DRAM. As every memory write triggers a check against an RMP entry, caching&#13;
RMP entries is crucial to alleviating the RMP’s performance impact. However, caching may create new security challenges, as it&#13;
can introduce new microarchitectural side-channels. In addition,&#13;
maintaining cache coherence is crucial for the RMP’s security guarantees. However, so far, neither the details of the RMP’s caching&#13;
behavior nor its security implications have been explored. This&#13;
paper aims to fill this gap by conducting a systematic study of the&#13;
RMP’s caching behavior. Through reverse engineering, we identify&#13;
that the RMP is not only cached in the TLB, but also in the L1D&#13;
and L2 data cache. Interestingly, this caching depends on the access&#13;
type on Zen 5. We also uncover the mechanisms by which cache&#13;
coherence across the TLB is enforced. We find that each update to&#13;
the RMP table triggers a global TLB flush across all cores. Finally,&#13;
we present several potential security implications and demonstrate&#13;
that an attacker can exploit RMP’s caching to leak physical address&#13;
information. A user process can leak 6 bits of the Physical Frame&#13;
Number (PFN) of its pages via the L1D cache within 2.5 µs per page,&#13;
with success rates of 97 % (Zen 4) and 99 % (Zen 3 and Zen 5).
</summary>
<dc:date>2025-10-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Guarding LLM-aided Software Transformation Tasks via Component Exoskeletons</title>
<link href="https://hdl.handle.net/1721.1/164203" rel="alternate"/>
<author>
<name>Lamprou, Evangelos</name>
</author>
<author>
<name>Kalhauge, Christian</name>
</author>
<author>
<name>Rinard, Martin</name>
</author>
<author>
<name>Vasilakis, Nikos</name>
</author>
<id>https://hdl.handle.net/1721.1/164203</id>
<updated>2025-12-05T04:15:47Z</updated>
<published>2025-10-13T00:00:00Z</published>
<summary type="text">Guarding LLM-aided Software Transformation Tasks via Component Exoskeletons
Lamprou, Evangelos; Kalhauge, Christian; Rinard, Martin; Vasilakis, Nikos
Large language models (LLMs) are achieving state-of-the-art results across a wide variety of software transformation tasks---including translating across languages and lifting opaque software components to high-level languages. Unfortunately, their results are often subtly incorrect, insecure, or underperformant---affecting the widespread deployment of these LLM-driven techniques in settings that go beyond the narrow scope of academic papers. This paper posits that such widespread deployment crucially depends on developing appropriate model guardrails for safeguarding the results of the transformation process. Such guardrails can be supported by component exoskeletons, tunable partial specifications extracted mostly automatically from the original, pre-transformed component. Exoskeletons serve as component projections that supplement, and often go through, the entire transformation process, confirming that the new, transformed component meets the original specifications. They show promise on several real-world scenarios and unearth exciting research directions.
PACMI ’25, October 13-16, 2025, Seoul, Republic of Korea
</summary>
<dc:date>2025-10-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Continuous Tensor Abstraction: Where Indices Are Real</title>
<link href="https://hdl.handle.net/1721.1/164202" rel="alternate"/>
<author>
<name>Won, Jaeyeon</name>
</author>
<author>
<name>Ahrens, Willow</name>
</author>
<author>
<name>Collin, Teodoro Fields</name>
</author>
<author>
<name>Emer, Joel S.</name>
</author>
<author>
<name>Amarasinghe, Saman</name>
</author>
<id>https://hdl.handle.net/1721.1/164202</id>
<updated>2025-12-05T04:15:43Z</updated>
<published>2025-10-09T00:00:00Z</published>
<summary type="text">The Continuous Tensor Abstraction: Where Indices Are Real
Won, Jaeyeon; Ahrens, Willow; Collin, Teodoro Fields; Emer, Joel S.; Amarasinghe, Saman
This paper introduces the continuous tensor abstraction, allowing indices to take real-number values (e.g., A[3.14]). It also presents continuous tensor algebra expressions, such as Cx,y = Ax,y ∗ Bx,y, where indices are defined over a continuous domain. This work expands the traditional tensor model to include continuous tensors. Our implementation supports piecewise-constant tensors, on which infinite domains can be processed in finite time. We also introduce a new tensor format for efficient storage and a code generation technique for automatic kernel generation. For the first time, our abstraction expresses domains like computational geometry and computer graphics in the language of tensor programming. Our approach demonstrates competitive or better performance to hand-optimized kernels in leading libraries across diverse applications. Compared to hand-implemented libraries on a CPU, our compiler-based implementation achieves an average speedup of 9.20× on 2D radius search with ∼60× fewer lines of code (LoC), 1.22× on genomic interval overlapping queries (with ∼18× LoC saving), and 1.69× on trilinear interpolation in Neural Radiance Field (with ∼6× LoC saving).
</summary>
<dc:date>2025-10-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Domain-Specific Probabilistic Programming Language for Reasoning about Reasoning (Or: A Memo on memo)</title>
<link href="https://hdl.handle.net/1721.1/164201" rel="alternate"/>
<author>
<name>Chandra, Kartik</name>
</author>
<author>
<name>Chen, Tony</name>
</author>
<author>
<name>Tenenbaum, Joshua B.</name>
</author>
<author>
<name>Ragan-Kelley, Jonathan</name>
</author>
<id>https://hdl.handle.net/1721.1/164201</id>
<updated>2025-12-05T04:15:21Z</updated>
<published>2025-10-09T00:00:00Z</published>
<summary type="text">A Domain-Specific Probabilistic Programming Language for Reasoning about Reasoning (Or: A Memo on memo)
Chandra, Kartik; Chen, Tony; Tenenbaum, Joshua B.; Ragan-Kelley, Jonathan
The human ability to think about thinking ("theory of mind") is a fundamental object of study in many disciplines. In recent decades, researchers across these disciplines have converged on a rich computational paradigm for modeling theory of mind, grounded in recursive probabilistic reasoning. However, practitioners often find programming in this paradigm challenging: first, because thinking-about-thinking is confusing for programmers, and second, because models are slow to run. This paper presents memo, a new domain-specific probabilistic programming language that overcomes these challenges: first, by providing specialized syntax and semantics for theory of mind, and second, by taking a unique approach to inference that scales well on modern hardware via array programming. memo enables practitioners to write dramatically faster models with much less code, and has already been adopted by several research groups.
</summary>
<dc:date>2025-10-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Pyrosome: Verified Compilation for Modular Metatheory</title>
<link href="https://hdl.handle.net/1721.1/164200" rel="alternate"/>
<author>
<name>Jamner, Dustin</name>
</author>
<author>
<name>Kammer, Gabriel</name>
</author>
<author>
<name>Nag, Ritam</name>
</author>
<author>
<name>Chlipala, Adam</name>
</author>
<id>https://hdl.handle.net/1721.1/164200</id>
<updated>2025-12-05T04:15:31Z</updated>
<published>2025-10-09T00:00:00Z</published>
<summary type="text">Pyrosome: Verified Compilation for Modular Metatheory
Jamner, Dustin; Kammer, Gabriel; Nag, Ritam; Chlipala, Adam
We present Pyrosome, a generic framework for modular language metatheory that embodies a novel approach to extensible semantics and compilation, implemented in Coq. Common techniques for semantic reasoning are often tied to the specific structures of the languages and compilers that they support. Contextual equivalence is difficult to work with directly, and both logical relations and transition system-based approaches typically fix a specific notion of effect globally. While modular transition systems have been effective in imperative settings, they are suboptimal for functional code. These limitations restrict the extension and composition of semantics in these systems. In Pyrosome, verified compilers are fully extensible, meaning that to extend a language simply requires defining and verifying the compilation of the new feature, reusing the old correctness theorem for all other cases. The novel enabling idea is an inductive formulation of equivalence preservation that supports the addition of new rules to the source language, target language, and compiler.&#13;
&#13;
Pyrosome defines a formal, deeply embedded notion of programming languages with semantics given by dependently sorted equational theories, so all compiler-correctness proofs boil down to type-checking and equational reasoning. We support vertical composition of any compilers expressed in our framework in addition to feature extension. Since our design requires compilers to support open programs, our correctness guarantees support linking with any target code of the appropriate type. As a case study, we present a multipass compiler from System F with simple references, through CPS translation and closure conversion. Specifically, we demonstrate how we can build such a compiler incrementally by starting with a compiler for simply typed lambda-calculus and adding natural numbers, the unit type, recursive functions, and a global heap, then extending judgments with a type environment and adding type abstraction, all while reusing the original theorems. We also present a linear version of the simply typed CPS pass and compile a small imperative language to the simply typed target to show how Pyrosome handles substructural typing and imperative features.
</summary>
<dc:date>2025-10-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>What You See Is What It Does: A Structural Pattern for Legible Software</title>
<link href="https://hdl.handle.net/1721.1/164199" rel="alternate"/>
<author>
<name>Meng, Eagon</name>
</author>
<author>
<name>Jackson, Daniel</name>
</author>
<id>https://hdl.handle.net/1721.1/164199</id>
<updated>2025-12-05T04:15:32Z</updated>
<published>2025-10-09T00:00:00Z</published>
<summary type="text">What You See Is What It Does: A Structural Pattern for Legible Software
Meng, Eagon; Jackson, Daniel
The opportunities offered by LLM coders (and their current limitations) demand a reevaluation of how software is structured. Software today is often “illegible”—lacking a direct correspondence between code and observed behavior—and insufficiently modular, leading to a failure of three key requirements of robust coding: incrementality (the ability to deliver small increments by making localized changes), integrity (avoiding breaking prior increments) and transparency (making clear what has changed at build time, and what actions have happened at runtime).&#13;
A new structural pattern offers improved legibility and modularity. Its elements are concepts and synchronizations: fully independent services and event-based rules that mediate between them. A domain-specific language for synchronizations allows behavioral features to be expressed in a granular and declarative way (and thus readily generated by an LLM). A case study of the RealWorld benchmark is used to illustrate and evaluate the approach.
Onward! ’25, Singapore, Singapore
</summary>
<dc:date>2025-10-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Gauguin, Descartes, Bayes: A Diurnal Golem’s Brain</title>
<link href="https://hdl.handle.net/1721.1/164198" rel="alternate"/>
<author>
<name>Chandra, Kartik</name>
</author>
<author>
<name>Liu, Amanda</name>
</author>
<author>
<name>Ragan-Kelley, Jonathan</name>
</author>
<author>
<name>Tenenbaum, Joshua B.</name>
</author>
<id>https://hdl.handle.net/1721.1/164198</id>
<updated>2025-12-05T04:15:29Z</updated>
<published>2025-10-09T00:00:00Z</published>
<summary type="text">Gauguin, Descartes, Bayes: A Diurnal Golem’s Brain
Chandra, Kartik; Liu, Amanda; Ragan-Kelley, Jonathan; Tenenbaum, Joshua B.
A "quine" is a deterministic program that prints itself. In this essay, I will show you a "gauguine": a probabilistic program that infers itself. A gauguine is repeatedly asked to guess its own source code. Initially, its chances of guessing correctly are of course minuscule. But as the gauguine observes more and more of its own previous guesses, it detects patterns of behavior and gains information about its inner workings. This information allows it to bootstrap self-knowledge, and ultimately discover its own source code. We will discuss how—and why—we might write a gauguine, and what we stand to learn by constructing one.
Onward! ’25, Singapore, Singapore
</summary>
<dc:date>2025-10-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Low-Fidelity vs. High-Fidelity Spatial Design in Virtual Reality for Non-professionals</title>
<link href="https://hdl.handle.net/1721.1/164197" rel="alternate"/>
<author>
<name>Wei, Lan</name>
</author>
<author>
<name>Dai, Chenyue</name>
</author>
<author>
<name>Peng, Xuening</name>
</author>
<author>
<name>Tong, Xin</name>
</author>
<author>
<name>Liu, Can</name>
</author>
<id>https://hdl.handle.net/1721.1/164197</id>
<updated>2025-12-05T04:15:37Z</updated>
<published>2024-10-29T00:00:00Z</published>
<summary type="text">Low-Fidelity vs. High-Fidelity Spatial Design in Virtual Reality for Non-professionals
Wei, Lan; Dai, Chenyue; Peng, Xuening; Tong, Xin; Liu, Can
In spatial design, non-professionals lack effective hands-on opportunities to participate in the design process. Although VR platforms can support spatial design with immersive interaction, existing tools simply provide high-fidelity 3D objects for users to choose and place around. Low-fidelity design approach is rarely supported, nor investigated in this context. In this work, we present a user study comparing low-fidelity and high-fidelity spatial design in VR. Eighteen participants were recruited to use both versions of a prototype with varied geometric fidelity to complete home designs. Their design outcome and intent was evaluated by professional designers. Our findings show, the low-fidelity version allowed participants to think more openly and creatively, leading to a more holistic expression of their design intent and needs, while the high-fidelity version promoted users’ thinking of realistic scenarios. We discuss the design implications and how they can be combined in co-design activities.
CHCHI 2024, Shenzhen, China
</summary>
<dc:date>2024-10-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Trans Data: A Research and Design Agenda from Trans Activists' Transformative Data Science</title>
<link href="https://hdl.handle.net/1721.1/164196" rel="alternate"/>
<author>
<name>Stevens, Nikko</name>
</author>
<author>
<name>D'Ignazio, Catherine</name>
</author>
<author>
<name>Doğan, Amelia</name>
</author>
<id>https://hdl.handle.net/1721.1/164196</id>
<updated>2025-12-05T04:15:38Z</updated>
<published>2025-10-16T00:00:00Z</published>
<summary type="text">Trans Data: A Research and Design Agenda from Trans Activists' Transformative Data Science
Stevens, Nikko; D'Ignazio, Catherine; Doğan, Amelia
Trans activists play a deeply important role in caring for and advocating for the transgender community using data. Through an interview study with 16 trans activists working in trans-led and trans-serving organizations in the United States, we document how they use restorative/transformative data science processes of resolving, researching, recording, and refusing and using data. We incorporate their data practices with trans technology and trans competent interaction design approaches to propose a research agenda for trans data: materially improve trans lives, cross data boundaries, and constantly engage in power analysis. We expound on how a trans data research agenda can benefit data advocacy and CSCW research and design.
</summary>
<dc:date>2025-10-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Techno-economic analysis and life cycle assessment for catalytic fast pyrolysis of mixed plastic waste</title>
<link href="https://hdl.handle.net/1721.1/164195" rel="alternate"/>
<author>
<name>Yadav, Geetanjali</name>
</author>
<author>
<name>Singh, Avantika</name>
</author>
<author>
<name>Dutta, Abhijit</name>
</author>
<author>
<name>Uekert, Taylor</name>
</author>
<author>
<name>DesVeaux, Jason S</name>
</author>
<author>
<name>Nicholson, Scott R</name>
</author>
<author>
<name>Tan, Eric CD</name>
</author>
<author>
<name>Mukarakate, Calvin</name>
</author>
<author>
<name>Schaidle, Joshua A</name>
</author>
<author>
<name>Wrasman, Cody J</name>
</author>
<author>
<name>Carpenter, Alberta C</name>
</author>
<author>
<name>Baldwin, Robert M</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Beckham, Gregg T</name>
</author>
<id>https://hdl.handle.net/1721.1/164195</id>
<updated>2025-12-05T04:15:58Z</updated>
<published>2023-06-05T00:00:00Z</published>
<summary type="text">Techno-economic analysis and life cycle assessment for catalytic fast pyrolysis of mixed plastic waste
Yadav, Geetanjali; Singh, Avantika; Dutta, Abhijit; Uekert, Taylor; DesVeaux, Jason S; Nicholson, Scott R; Tan, Eric CD; Mukarakate, Calvin; Schaidle, Joshua A; Wrasman, Cody J; Carpenter, Alberta C; Baldwin, Robert M; Román-Leshkov, Yuriy; Beckham, Gregg T
yrolysis of waste plastics has gained interest as a candidate chemical recycling technology. To examine the potential of this approach, we conducted a techno-economic analysis (TEA) and life cycle assessment (LCA) of a conceptual catalytic fast pyrolysis (CFP) facility that converts 240 metric tons/day of mixed plastic waste. The modeled base case predicts the minimum selling price (MSP) of a benzene, toluene, and xylenes (BTX) mixture at $1.07 per kg when co-products are sold at their average market prices. We predict that the aromatic product stream can be cost-competitive with virgin BTX mixtures ($0.68/kg) if the mixed waste plastics are available for less than $0.10/kg or if crude oil prices exceed $60/barrel. Moreover, we estimate that CFP-based conversion of waste plastics can reduce the total supply chain energy use by 24% but with a 2.4-fold increase in greenhouse gas (GHG) emissions per kilogram of BTX, relative to incumbent manufacturing process. Sensitivity analysis highlights that feedstock cost, co-product selling prices, capital cost for product separations, and operating costs are key cost drivers. Further, we examine three additional CFP processes that differ in product composition, namely naphtha, and a case where the products are rich in either C2–C4 olefins or BTX aromatic hydrocarbons. Whereas the MSP of naphtha ($2.18/kg) is ∼4-fold higher than virgin naphtha, both the olefin-rich and aromatics-rich product cases exhibit a potential reduction in MSP up to 40%, with a 21%–45% reduction in total supply chain energy and 2.2–3.8-fold increase in GHG emissions relative to incumbent manufacturing processes. LCA predicts that the CFP process exhibits lower fossil fuel depletion than virgin manufacturing across all cases as well as lower acidification, ozone depletion, and smog formation for select cases, but high utility and feedstock preparation requirements result in poorer performance across other metrics. Overall, this study highlights important process parameters for improving CFP of mixed waste plastics from economic and environmental perspectives.
</summary>
<dc:date>2023-06-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Togedule: Scheduling Meetings with Large Language Models and Adaptive Representations of Group Availability</title>
<link href="https://hdl.handle.net/1721.1/164194" rel="alternate"/>
<author>
<name>Song, Jaeyoon</name>
</author>
<author>
<name>Ashktorab, Zahra</name>
</author>
<author>
<name>Malone, Thomas</name>
</author>
<id>https://hdl.handle.net/1721.1/164194</id>
<updated>2025-12-05T04:15:34Z</updated>
<published>2025-10-16T00:00:00Z</published>
<summary type="text">Togedule: Scheduling Meetings with Large Language Models and Adaptive Representations of Group Availability
Song, Jaeyoon; Ashktorab, Zahra; Malone, Thomas
Scheduling is a perennial-and often challenging-problem for many groups. Existing tools are mostly static, showing an identical set of choices to everyone, regardless of the current status of attendees' inputs and preferences. In this paper, we propose Togedule, an adaptive scheduling tool that uses large language models to dynamically adjust the pool of choices and their presentation format. With the initial prototype, we conducted a formative study (N=10) and identified the potential benefits and risks of such an adaptive scheduling tool. Then, after enhancing the system, we conducted two controlled experiments, one each for attendees and organizers (total N=66). For each experiment, we compared scheduling with verbal messages, shared calendars, or Togedule. Results show that Togedule significantly reduces the cognitive load of attendees indicating their availability and improves the speed and quality of the decisions made by organizers.
</summary>
<dc:date>2025-10-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Core‐passivation: A concept for stable core‐shell nanoparticles in aqueous electrocatalysis</title>
<link href="https://hdl.handle.net/1721.1/164193" rel="alternate"/>
<author>
<name>Göhl, Daniel</name>
</author>
<author>
<name>Paciok, Paul</name>
</author>
<author>
<name>Wang, Zhenshu</name>
</author>
<author>
<name>Kang, Jin Soo</name>
</author>
<author>
<name>Heggen, Marc</name>
</author>
<author>
<name>Mayrhofer, Karl JJ</name>
</author>
<author>
<name>Román‐Leshkov, Yuriy</name>
</author>
<author>
<name>Ledendecker, Marc</name>
</author>
<id>https://hdl.handle.net/1721.1/164193</id>
<updated>2025-12-04T03:14:19Z</updated>
<published>2023-01-19T00:00:00Z</published>
<summary type="text">Core‐passivation: A concept for stable core‐shell nanoparticles in aqueous electrocatalysis
Göhl, Daniel; Paciok, Paul; Wang, Zhenshu; Kang, Jin Soo; Heggen, Marc; Mayrhofer, Karl JJ; Román‐Leshkov, Yuriy; Ledendecker, Marc
The stability of nanoparticles is a major challenge in thermal and electrocatalysis. This is especially true for core‐shell nanoparticles where only a few monolayers of noble metal protect the usually non‐noble core material. In this work, we utilize the practical nobility concept to engineer stable core‐shell nanoparticles with a self‐passivating core material. Specifically, tantalum carbide as core material in combination with a 1–3 monolayer thick platinum shell exhibits exceptional stability in aqueous media. The core‐shell catalyst shows no sign of structural changes after 10,000 degradation cycles up to 1.0 V&lt;jats:sub&gt;RHE&lt;/jats:sub&gt;. Due to the efficient passivation of tantalum carbide at the solid/liquid interface, the dissolution reduces by a factor of eight compared to bare Pt. Our findings confirm that passivating core materials are highly beneficial for the stabilization of core‐shell nanomaterials in aqueous media. They open up new ways for the rational design of cost‐efficient but stable non‐noble core – platinum shell nanoparticles where harsh, oxidizing conditions are employed.
</summary>
<dc:date>2023-01-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interdependence of Solvent and Catalyst Selection on Low Pressure Hydrogen-Free Reductive Catalytic Fractionation</title>
<link href="https://hdl.handle.net/1721.1/164192" rel="alternate"/>
<author>
<name>Facas, Gregory G</name>
</author>
<author>
<name>Brandner, David G</name>
</author>
<author>
<name>Bussard, Jeremy R</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Beckham, Gregg T</name>
</author>
<id>https://hdl.handle.net/1721.1/164192</id>
<updated>2025-12-04T03:14:28Z</updated>
<published>2023-03-13T00:00:00Z</published>
<summary type="text">Interdependence of Solvent and Catalyst Selection on Low Pressure Hydrogen-Free Reductive Catalytic Fractionation
Facas, Gregory G; Brandner, David G; Bussard, Jeremy R; Román-Leshkov, Yuriy; Beckham, Gregg T
Hydrogen-free reductive catalytic fractionation (RCF) is a promising method to produce aromatic compounds directly from native biomass without the use of external hydrogen gas. In this work, we show that by using high boiling point diols as a solvent in hydrogen-free RCF, reaction pressures can be reduced by an order of magnitude compared to conventional RCF with methanol and hydrogen gas, while still producing appreciable aromatic monomer yields. Importantly, the use of diols with secondary alcohol functional groups increases hydrogenation activity on Ru/C, Pt/C, and Ni/C, measured by the yield of aromatic compounds with saturated propyl side chains, compared to processing in ethylene glycol, indicating that the choice of solvent and catalyst together can be tuned to control product selectivity of aromatic monomers in RCF.
</summary>
<dc:date>2023-03-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Propylene Metathesis over Molybdenum Silicate Microspheres with Dispersed Active Sites</title>
<link href="https://hdl.handle.net/1721.1/164191" rel="alternate"/>
<author>
<name>Skoda, David</name>
</author>
<author>
<name>Zhu, Ran</name>
</author>
<author>
<name>Hanulikova, Barbora</name>
</author>
<author>
<name>Styskalik, Ales</name>
</author>
<author>
<name>Vykoukal, Vit</name>
</author>
<author>
<name>Machac, Petr</name>
</author>
<author>
<name>Simonikova, Lucie</name>
</author>
<author>
<name>Kuritka, Ivo</name>
</author>
<author>
<name>Poleunis, Claude</name>
</author>
<author>
<name>Debecker, Damien P</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<id>https://hdl.handle.net/1721.1/164191</id>
<updated>2025-12-04T03:14:25Z</updated>
<published>2023-09-20T00:00:00Z</published>
<summary type="text">Propylene Metathesis over Molybdenum Silicate Microspheres with Dispersed Active Sites
Skoda, David; Zhu, Ran; Hanulikova, Barbora; Styskalik, Ales; Vykoukal, Vit; Machac, Petr; Simonikova, Lucie; Kuritka, Ivo; Poleunis, Claude; Debecker, Damien P; Román-Leshkov, Yuriy
In this work, we demonstrate that amorphous and porous molybdenum silicate microspheres are highly active catalysts for heterogeneous propylene metathesis. Homogeneous molybdenum silicate microspheres and aluminum-doped molybdenum silicate microspheres were synthesized via a nonaqueous condensation of a hybrid molybdenum biphenyldicarboxylate-based precursor solution with (3-aminopropyl)triethoxysilane. The as-prepared hybrid metallosilicate products were calcined at 500 °C to obtain amorphous and porous molybdenum silicate and aluminum-doped molybdenum silicate microspheres with highly dispersed molybdate species inserted into the silicate matrix. These catalysts contain mainly highly dispersed MoOx species, which possess high catalytic activity in heterogeneous propylene metathesis to ethylene and butene. Compared to conventional silica-supported MoOx catalysts prepared via incipient wetness impregnation (MoIWI), the microspheres with low Mo content (1.5–3.6 wt %) exhibited nearly 2 orders of magnitude higher steady-state propylene metathesis rates at 200 °C, approaching site time yields of 0.11 s–1.
</summary>
<dc:date>2023-09-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Accessing monomers from lignin through carbon–carbon bond cleavage</title>
<link href="https://hdl.handle.net/1721.1/164190" rel="alternate"/>
<author>
<name>Palumbo, Chad T</name>
</author>
<author>
<name>Ouellette, Erik T</name>
</author>
<author>
<name>Zhu, Jie</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Stahl, Shannon S</name>
</author>
<author>
<name>Beckham, Gregg T</name>
</author>
<id>https://hdl.handle.net/1721.1/164190</id>
<updated>2025-12-04T03:14:20Z</updated>
<published>2024-10-04T00:00:00Z</published>
<summary type="text">Accessing monomers from lignin through carbon–carbon bond cleavage
Palumbo, Chad T; Ouellette, Erik T; Zhu, Jie; Román-Leshkov, Yuriy; Stahl, Shannon S; Beckham, Gregg T
Lignin, the heterogeneous aromatic macromolecule found in the cell walls of vascular plants, is an abundant feedstock for the production of biochemicals and biofuels. Many valorization schemes rely on lignin depolymerization, with decades of research focused on accessing monomers through C–O bond cleavage, given the abundance of β–O–4 bonds in lignin and the large number of available C–O bond cleavage strategies. Monomer yields are, however, invariably lower than desired, owing to the presence of recalcitrant C–C bonds whose selective cleavage remains a major challenge in catalysis. In this Review, we highlight lignin C–C cleavage reactions, including those of linkages arising from biosynthesis (β–1, β–5, β–β and 5–5) and industrial processing (5–CH2–5 and α–5). We examine multiple approaches to C–C cleavage, including homogeneous and heterogeneous catalysis, photocatalysis and biocatalysis, to identify promising strategies for further research and provide guidelines for definitive measurements of lignin C–C bond cleavage.
</summary>
<dc:date>2024-10-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Direct propylene epoxidation via water activation over Pd-Pt electrocatalysts</title>
<link href="https://hdl.handle.net/1721.1/164189" rel="alternate"/>
<author>
<name>Chung, Minju</name>
</author>
<author>
<name>Maalouf, Joseph H</name>
</author>
<author>
<name>Adams, Jason S</name>
</author>
<author>
<name>Jiang, Chenyu</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Manthiram, Karthish</name>
</author>
<id>https://hdl.handle.net/1721.1/164189</id>
<updated>2025-12-04T03:14:16Z</updated>
<published>2024-01-04T00:00:00Z</published>
<summary type="text">Direct propylene epoxidation via water activation over Pd-Pt electrocatalysts
Chung, Minju; Maalouf, Joseph H; Adams, Jason S; Jiang, Chenyu; Román-Leshkov, Yuriy; Manthiram, Karthish
Direct electrochemical propylene epoxidation by means of water-oxidation intermediates presents a sustainable alternative to existing routes that involve hazardous chlorine or peroxide reagents. We report an oxidized palladium-platinum alloy catalyst (PdPtOx/C), which reaches a Faradaic efficiency of 66 ± 5% toward propylene epoxidation at 50 milliamperes per square centimeter at ambient temperature and pressure. Embedding platinum into the palladium oxide crystal structure stabilized oxidized platinum species, resulting in improved catalyst performance. The reaction kinetics suggest that epoxidation on PdPtOx/C proceeds through electrophilic attack by metal-bound peroxo intermediates. This work demonstrates an effective strategy for selective electrochemical oxygen-atom transfer from water, without mediators, for diverse oxygenation reactions.
</summary>
<dc:date>2024-01-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interaction Configurations and Prompt Guidance in Conversational AI for Question Answering in Human-AI Teams</title>
<link href="https://hdl.handle.net/1721.1/164188" rel="alternate"/>
<author>
<name>Song, Jaeyoon</name>
</author>
<author>
<name>Ashktorab, Zahra</name>
</author>
<author>
<name>Pan, Qian</name>
</author>
<author>
<name>Dugan, Casey</name>
</author>
<author>
<name>Geyer, Werner</name>
</author>
<author>
<name>Malone, Thomas</name>
</author>
<id>https://hdl.handle.net/1721.1/164188</id>
<updated>2025-12-04T03:14:02Z</updated>
<published>2025-10-16T00:00:00Z</published>
<summary type="text">Interaction Configurations and Prompt Guidance in Conversational AI for Question Answering in Human-AI Teams
Song, Jaeyoon; Ashktorab, Zahra; Pan, Qian; Dugan, Casey; Geyer, Werner; Malone, Thomas
Understanding the dynamics of human-AI interaction in question answering is crucial for enhancing collaborative efficiency. Extending from our initial formative study, which revealed challenges in human utilization of conversational AI support, we designed two configurations for prompt guidance: a Nudging approach, where the AI suggests potential responses for human agents, and a Highlight strategy, emphasizing crucial parts of reference documents to aid human responses. Through two controlled experiments, the first involving 31 participants and the second involving 106 participants, we compared these configurations against traditional human-only approaches, both with and without AI assistance. Our findings suggest that effective human-AI collaboration can enhance response quality, though merely combining human and AI efforts does not ensure improved outcomes. In particular, the Nudging configuration was shown to help improve the quality of the output when compared to AI alone. This paper delves into the development of these prompt guidance paradigms, offering insights for refining human-AI collaborations in conversational question-answering contexts and contributing to a broader understanding of human perceptions and expectations in AI partnerships.
</summary>
<dc:date>2025-10-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Pushing on an Open Door: Japan’s Evolutionary Security Posture</title>
<link href="https://hdl.handle.net/1721.1/164187" rel="alternate"/>
<author>
<name>Heginbotham, Eric</name>
</author>
<author>
<name>Leiter, Samuel</name>
</author>
<author>
<name>Samuels, Richard J</name>
</author>
<id>https://hdl.handle.net/1721.1/164187</id>
<updated>2025-12-04T03:14:27Z</updated>
<published>2023-07-13T00:00:00Z</published>
<summary type="text">Pushing on an Open Door: Japan’s Evolutionary Security Posture
Heginbotham, Eric; Leiter, Samuel; Samuels, Richard J
At the 2022 Shangri­-La Dialogue, Japan’s Prime Minister Fumio Kishida warned defense ministers from across the Indo-Pacific region that “Ukraine today may be East Asia tomorrow.” Russia’s war of aggression and China’s tacit support for the invasion have amplified the urgency of the threat posed by China’s economic and military rise and have informed material changes to Japanese defense policy.
</summary>
<dc:date>2023-07-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dissecting User Experience of Social Virtual Reality: A Tale of Five Platforms</title>
<link href="https://hdl.handle.net/1721.1/164186" rel="alternate"/>
<author>
<name>Cheng, Ruizhi</name>
</author>
<author>
<name>Li, Jie</name>
</author>
<author>
<name>Chen, Songqing</name>
</author>
<author>
<name>Han, Bo</name>
</author>
<id>https://hdl.handle.net/1721.1/164186</id>
<updated>2025-12-04T03:14:05Z</updated>
<published>2025-10-16T00:00:00Z</published>
<summary type="text">Dissecting User Experience of Social Virtual Reality: A Tale of Five Platforms
Cheng, Ruizhi; Li, Jie; Chen, Songqing; Han, Bo
Social virtual reality (VR) has the potential to replace conventional online social media by offering quasi-realworld social experiences. As such, it has been extensively examined by the research community. However,&#13;
existing studies fall short of providing a comprehensive understanding of how different aspects of social&#13;
VR platforms interact to affect user experience. Motivated by this limitation, we conduct a user study with&#13;
Oculus Quest 2 headsets and dissect the user experience on five social VR platforms. We evenly and randomly&#13;
divide 42 participants into short-term (spending 10–30 minutes/platform) and long-term (spending at least&#13;
120 minutes/platform) groups. Besides employing surveys and interviews, we measure the frame rate and&#13;
resolution of these platforms and explore how various factors interplay to influence the user experience of&#13;
social VR. Our findings reveal that the frame rate, resolution, and interactive events of social VR platforms&#13;
have a more significant impact on the experience of long-term users compared to short-term users. The&#13;
scalability limitations of these platforms, as evidenced by decreased frame rates with the increasing number&#13;
of concurrent users, result in an increased prevalence of motion sickness among long-term users, negatively&#13;
impacting their overall experience. Moreover, the absence of highly interactive events also deteriorates their&#13;
overall experience, and the low resolution combined with the lack of interactive events further decreases their&#13;
sense of social presence. Additionally, our study demonstrates several common limitations negatively affecting&#13;
the experience of both long-term and short-term users. For example, the harassment prevention mechanisms&#13;
on all five platforms are inadequate, and being harassed has a detrimental effect on users’ overall experience&#13;
and sense of social presence. The avatar embodiment of investigated platforms has limited contribution to&#13;
users’ sense of social presence, mainly due to the lack of realism and full-body tracking. Our findings call for&#13;
more research in scalability support, motion sickness relief, interactive event design, harassment prevention,&#13;
and avatar development for improving social VR platforms in the future.
</summary>
<dc:date>2025-10-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Investigation of critical heat flux enhancement on nanoengineered surfaces in pressurized subcooled flow boiling using infrared thermometry</title>
<link href="https://hdl.handle.net/1721.1/164185" rel="alternate"/>
<author>
<name>Wang, Chi</name>
</author>
<author>
<name>Su, Guanyu</name>
</author>
<author>
<name>Akinsulire, Olorunsola</name>
</author>
<author>
<name>Zhang, Limiao</name>
</author>
<author>
<name>Rahman, Md Mahamudur</name>
</author>
<author>
<name>Bucci, Matteo</name>
</author>
<id>https://hdl.handle.net/1721.1/164185</id>
<updated>2025-12-04T03:14:24Z</updated>
<published>2023-03-28T00:00:00Z</published>
<summary type="text">Investigation of critical heat flux enhancement on nanoengineered surfaces in pressurized subcooled flow boiling using infrared thermometry
Wang, Chi; Su, Guanyu; Akinsulire, Olorunsola; Zhang, Limiao; Rahman, Md Mahamudur; Bucci, Matteo
Enhancing the flow boiling critical heat flux (CHF) is beneficial to the economics and safety margins of many industrial applications cooled by boiling heat transfer. While many studies have shown that surfaces with hydrophilic nanoscale and micro-scale features can enhance CHF in pool boiling, it is still not clear how these engineered surfaces affect the CHF in subcooled flow boiling at ambient pressure, let alone high-pressure conditions. Here, two nano-engineered surfaces, i.e., a surface coated with a porous layer of hydrophilic silica nanoparticles and a surface coated with zinc oxide nanowires, were tested. Flow boiling tests with a 10 K subcooling and a mass flux of 1000 kg/(m2·s) were conducted at 1 bar and 4 bars using infrared thermometry diagnostics. At 1 bar, the CHF enhancement is around 15% for both coatings. At 4 bars, the CHF enhancement is around 17% for the nanowire surface, and around 25% for the nano-porous surface. Infrared thermometry measurements reveal that the CHF enhancement comes from an increase of both two-phase heat transfer and single-phase heat transfer mechanisms, which is due to a change of bubble dynamics on the nanoengineered surfaces. It is also shown that the boiling crisis can be predicted using a percolation model based on Monte Carlo (MC) simulations.
</summary>
<dc:date>2023-03-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Connecting Digitalization and Sustainability: Proptech in the Real Estate Operations and Management</title>
<link href="https://hdl.handle.net/1721.1/164184" rel="alternate"/>
<author>
<name>Tan, Zhengzhen</name>
</author>
<author>
<name>Miller, Norm G.</name>
</author>
<id>https://hdl.handle.net/1721.1/164184</id>
<updated>2025-12-04T03:14:31Z</updated>
<published>2023-04-27T00:00:00Z</published>
<summary type="text">Connecting Digitalization and Sustainability: Proptech in the Real Estate Operations and Management
Tan, Zhengzhen; Miller, Norm G.
Digitalization of building operations and maintenance enable real-time monitoring, optimization, and automation for environment sustainability. Proptech startups are important change agents in accelerating building digitalization. While many researchers analyze economic and environmental savings from deployment of digital technology, far less attention has been devoted to challenges for proptech startups to transform efficiency gains into viable businesses. We analyze the Unissu global proptech startup database to reveal the scope and competitive landscape of proptech solutions. We conduct interviews with building owners/operators to understand what impedes the adoption of proptech solutions. Despite rapid growth, ongoing challenges remain for sustainability-focused proptech firms with three adoption barriers: (1) integration of the technology stacks; (2) integration of technology stacks with business processes; and (3) integration of owner/operators and the occupants’ solutions. Proptech with applications that work with existing infrastructure or provide more complete holistic solutions with extensive capital reserves, are more likely to survive. Other pathways include having data standardization and security protocols in place; technology partnership with technology incumbents; and effective communication with owners/operators to fill the knowledge gap. Findings can provide insights to emerging digital proptech startups as they spearhead market adoption in the real estate sector and monetize the sustainability value creation.
</summary>
<dc:date>2023-04-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Driver response and recovery following automation initiated disengagement in real-world hands-free driving</title>
<link href="https://hdl.handle.net/1721.1/164183" rel="alternate"/>
<author>
<name>Gershon, Pnina</name>
</author>
<author>
<name>Mehler, Bruce</name>
</author>
<author>
<name>Reimer, Bryan</name>
</author>
<id>https://hdl.handle.net/1721.1/164183</id>
<updated>2025-12-04T03:14:22Z</updated>
<published>2023-03-29T00:00:00Z</published>
<summary type="text">Driver response and recovery following automation initiated disengagement in real-world hands-free driving
Gershon, Pnina; Mehler, Bruce; Reimer, Bryan
Objective&#13;
Advanced driver assistance systems are increasingly available in consumer vehicles, making the study of drivers’ behavioral adaptation and the impact of automation beneficial for driving safety. Concerns over driver’s being out-of-the-loop, coupled with known limitations of automation, has led research to focus on time-critical, system-initiated disengagements. This study used real-world data to assess drivers’ response to, and recovery from, automation-initiated disengagements by quantifying changes in visual attention, vehicle control, and time to steady-state behaviors.&#13;
&#13;
Methods&#13;
Fourteen drivers drove for one month each a Cadillac CT6 equipped with Super Cruise (SC), a partial automation system that, when engaged, enables hands-free driving. The vehicles were instrumented with data acquisition systems recording driving kinematics, automation use, GPS, and video. The dataset included 265 SC-initiated disengagements identified across 5,514 miles driven with SC.&#13;
&#13;
Results&#13;
Linear quantile mixed-effects models of glance behavior indicated that following SC-initiated disengagement, the proportions of glances to the Road decreased (Q50Before=0.91, Q50After=0.69; Q85Before=1.0, Q85After=0.79), the proportions of glances to the Instrument Cluster increased (Q50Before=0.14, Q50After=0.25; Q85Before=0.34, Q85After=0.45), and mean glance duration to the Road decreased by 4.86 sec in Q85. Multinomial logistic regression mixed-models of glance distributions indicated that the number of transitions between glance locations following disengagement increased by 43% and that glances were distributed across fewer locations. When driving hands-free, take over time was significantly longer (2.4 sec) compared to when driving with at least one hand on the steering wheel (1.8 sec). Analysis of moment-to-moment distributional properties of visual attention and steering wheel control following disengagement indicated that on average it took drivers 6.1 sec to start the recovery of glance behavior to the Road and 1.5 sec for trend-stationary proportions of at least one hand on the steering wheel.&#13;
&#13;
Conclusions&#13;
Automation-initiated disengagements triggered substantial changes in driver glance behavior including shorter on-road glances and frequent transitions between Road and Instrument Cluster glance locations. This information seeking behavior may capture drivers’ search for information related to the disengagement or the automation state and is likely shaped by the automation design. The study findings can inform the design of more effective driver-centric information displays for smoother transitions and faster recovery.
</summary>
<dc:date>2023-03-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Lessons in Sanctions-Proofing from Russia</title>
<link href="https://hdl.handle.net/1721.1/164182" rel="alternate"/>
<author>
<name>Glenn, Caileigh</name>
</author>
<id>https://hdl.handle.net/1721.1/164182</id>
<updated>2025-12-04T03:14:33Z</updated>
<published>2023-04-04T00:00:00Z</published>
<summary type="text">Lessons in Sanctions-Proofing from Russia
Glenn, Caileigh
Government actors and other observers across Europe and the United States called the multilateral sanctions imposed on Russia in early 2022 “unprecedented.”Footnote1 Even Russian President Vladimir Putin acknowledged their severity when he stressed “the need to counter economic restrictions that were imposed on us, which are truly unprecedented without any exaggeration.”Footnote2 Part of the response to the Russian invasion of Ukraine, these financial and trade sanctions—imposed on Russia by Western governments—target key firms in the financial and energy sectors, debt financing, technology, Russia’s foreign currency reserves, and more recently, most Russian oil and transportation insurers.
</summary>
<dc:date>2023-04-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Why Haven’t We Applied the Lessons from Lean to Innovation?</title>
<link href="https://hdl.handle.net/1721.1/164181" rel="alternate"/>
<author>
<name>Wright, Randall S.</name>
</author>
<id>https://hdl.handle.net/1721.1/164181</id>
<updated>2025-12-04T03:14:32Z</updated>
<published>2023-04-20T00:00:00Z</published>
<summary type="text">Why Haven’t We Applied the Lessons from Lean to Innovation?
Wright, Randall S.
Yes, I know. People have been doingLean innovation—increasing efficiencyby capturing customer feedback earlyand often and minimizing waste in theproduct development cycle—for the last10 years.I’m not talking about applying Leanprinciples to innovation. I’m talkingabout how American business leadershad the humility to admit their firmsneeded to learn Lean from Japaneseculture to master globally competitiveoperations, and why they need now tolearn innovation from the culture ofuniversities to master globally compet-itive innovation.
</summary>
<dc:date>2023-04-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Becoming Infrastructure: A Critical Realist Account of the Evolution of DHIS2 as Digital Public Health Infrastructure in Sierra Leone</title>
<link href="https://hdl.handle.net/1721.1/164180" rel="alternate"/>
<author>
<name>Ndubuisi-Obi, Innocent</name>
</author>
<author>
<name>Chen, Nuole</name>
</author>
<author>
<name>Tsai, Lily</name>
</author>
<id>https://hdl.handle.net/1721.1/164180</id>
<updated>2025-12-04T03:14:04Z</updated>
<published>2025-10-16T00:00:00Z</published>
<summary type="text">Becoming Infrastructure: A Critical Realist Account of the Evolution of DHIS2 as Digital Public Health Infrastructure in Sierra Leone
Ndubuisi-Obi, Innocent; Chen, Nuole; Tsai, Lily
Today, the District Health Information System 2 (DHIS2) has become the de-facto standard for open-source health management information systems and Sierra Leone's status as the first country in sub-Saharan Africa to implement DHSI2 makes it a productive place for researchers interested in understanding the end-to-end process of infrastructuring in a low-resource bureaucratic setting. In this article, we examine its design, implementation, and maintenance in Sierra Leone over a period of 14 years - from 2008 to 2022. We present an intensive case study discretized by three morphogenetic cycles (decentralization, centralization, and fragmentation) and furnished with explanatory account's of DHIS2's evolution using a critical realist research methodology to describe the emergence of DHIS2 as digital public health infrastructure. These accounts highlight the structural and cultural systems of DHIS2, their elaborations, and their interaction with agents over successive periods of DHIS2's evolution. Our study finds that, despite its continued use in Sierra Leone, the increasing generativity in the structural and cultural systems of DHSI2 and Sierra Leone&amp;#8217;s public health system engenders a persistent instability that requires continuous resolution. Though we find that extant literature aids in our understanding of DHIS2&amp;#8217;s evolution, we proffer two mechanisms, infrastructural capture and socio-technical debt, which aid our explanation of events observed in our case study. Our work makes a case for more ontologically-diverse theorizing of bureaucracy-aware computing systems.
</summary>
<dc:date>2025-10-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Factorization in additive monoids of evaluation polynomial semirings</title>
<link href="https://hdl.handle.net/1721.1/164179" rel="alternate"/>
<author>
<name>Ajran, Khalid</name>
</author>
<author>
<name>Bringas, Juliet</name>
</author>
<author>
<name>Li, Bangzheng</name>
</author>
<author>
<name>Singer, Easton</name>
</author>
<author>
<name>Tirador, Marcos</name>
</author>
<id>https://hdl.handle.net/1721.1/164179</id>
<updated>2025-12-04T03:14:18Z</updated>
<published>2023-06-01T00:00:00Z</published>
<summary type="text">Factorization in additive monoids of evaluation polynomial semirings
Ajran, Khalid; Bringas, Juliet; Li, Bangzheng; Singer, Easton; Tirador, Marcos
For a positive real α, we can consider the additive submonoid M of the real line that is generated by the nonnegative powers of α. When α is transcendental, M is a unique factorization monoid. However, when α is algebraic, M may not be atomic, and even when M is atomic, it may contain elements having more than one factorization (i.e., decomposition as a sum of irreducibles). The main purpose of this paper is to study the phenomenon of multiple factorizations inside M. When α is algebraic but not rational, the arithmetic of factorizations in M is highly interesting and complex. In order to arrive to that conclusion, we investigate various factorization invariants of M, including the sets of lengths, sets of Betti elements, and catenary degrees. Our investigation gives continuity to recent studies carried out by Chapman et al. in 2020 and by Correa-Morris and Gotti in 2022.
</summary>
<dc:date>2023-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Argentella scandal: why French officials did not make Corsica a nuclear test site in 1960</title>
<link href="https://hdl.handle.net/1721.1/164178" rel="alternate"/>
<author>
<name>Cooper, Austin R.</name>
</author>
<id>https://hdl.handle.net/1721.1/164178</id>
<updated>2025-12-04T03:14:29Z</updated>
<published>2023-04-17T00:00:00Z</published>
<summary type="text">The Argentella scandal: why French officials did not make Corsica a nuclear test site in 1960
Cooper, Austin R.
Top French officials made plans in early 1960 to transform an abandoned silver mine in Corsica, called the Argentella Massif, into an underground site for nuclear explosions. By June 1960, they had canceled these plans. This article shows how a mass movement on the Mediterranean island forced their hand, and it explains why Corsicans of diverse political affiliations took to the streets. The Argentella project—and the health, environmental, and strategic risks that it entailed—looked in Corsica like evidence that Paris saw the islanders as second-class citizens, even residents of an internal colony. French police intelligence, which maintained surveillance on the Corsican anti-nuclear movement, feared that this movement might have drawn inspiration from the contemporaneous struggle for national liberation in Algeria, where French nuclear explosions began. The Argentella protests illustrated national disagreements about French nuclear ambitions that previous scholarship, proposing official consensus, has minimized. They show how, in a nuclear-armed democracy, local officials, political activists, and ordinary citizens can shape nuclear-weapons policy. But Corsican anti-nuclear action in 1960 did not demand disarmament. These protests also illuminate a longer trajectory in French nuclear history, which involved atmospheric explosions in colonized territories in Algeria and Polynesia until the 1970s, despite local and international resistance.
</summary>
<dc:date>2023-04-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Towards Foundation Model for Spatiotemporal Data Analysis</title>
<link href="https://hdl.handle.net/1721.1/164177" rel="alternate"/>
<author>
<name>Wu, Yuankai</name>
</author>
<author>
<name>Chen, Xinyu</name>
</author>
<author>
<name>Zhuang, Dingyi</name>
</author>
<id>https://hdl.handle.net/1721.1/164177</id>
<updated>2025-12-04T03:13:57Z</updated>
<published>2025-10-14T00:00:00Z</published>
<summary type="text">Towards Foundation Model for Spatiotemporal Data Analysis
Wu, Yuankai; Chen, Xinyu; Zhuang, Dingyi
Spatiotemporal data modeling has long been a fundamental task&#13;
across disciplines such as climate &amp; environmental science, and&#13;
transportation engineering. A typical goal is to estimate unknown&#13;
information at specific spatiotemporal points based on partially&#13;
observed data—for example, interpolating weather conditions at&#13;
unmeasured locations, reconstructing missing historical records, or&#13;
forecasting the future trajectories of financial markets. These are&#13;
all core tasks within the broader scope of spatiotemporal modeling.&#13;
This tutorial (1 hours) introduces a cohesive view of spatiotemporal data modeling, tracing the evolution from traditional statistical&#13;
approaches to modern deep learning paradigms. We begin by revisiting Kriging and time series decomposition to highlight the essential&#13;
assumptions and strengths of these classical methods. Next, we explore low-rank matrix and tensor completion techniques, which&#13;
leverage the structured patterns of spatiotemporal data. We then&#13;
elaborate on spatiotemporal graph neural networks, which characterize complex dependencies by integrating graph structures with&#13;
dynamic temporal features. Finally, we discuss recent advances in&#13;
applying large foundation models to spatiotemporal tasks, including their capabilities and current limitations.&#13;
Throughout the tutorial, we emphasize how lessons from traditional methods—such as the importance of locality, periodicity, and&#13;
smoothness priors—can inspire new directions for developing and&#13;
fine-tuning foundation models in the spatiotemporal domain. We&#13;
conclude by outlining key challenges and opportunities in bridging&#13;
classical wisdom with emerging AI capabilities.
SSTD ’25, Osaka, Japan
</summary>
<dc:date>2025-10-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Gender gaps in South Korea’s labour market: children explain most of the gender employment gap, but little of the gender wage gap</title>
<link href="https://hdl.handle.net/1721.1/164176" rel="alternate"/>
<author>
<name>Stansbury, Anna</name>
</author>
<author>
<name>Kirkegaard, Jacob Funk</name>
</author>
<author>
<name>Dynan, Karen</name>
</author>
<id>https://hdl.handle.net/1721.1/164176</id>
<updated>2025-12-04T03:14:15Z</updated>
<published>2023-05-03T00:00:00Z</published>
<summary type="text">Gender gaps in South Korea’s labour market: children explain most of the gender employment gap, but little of the gender wage gap
Stansbury, Anna; Kirkegaard, Jacob Funk; Dynan, Karen
South Korea’s gender wage and employment gaps are among the largest in the OECD. Using labour force survey data over 2010–19, we estimate gender wage and employment gaps, and child earnings penalties, for women aged 25–54. We show (i) that the large gender gaps in South Korea’s labour market are mostly not a function of differential sorting by gender along education, occupation, or industry lines, (ii) that caring for children (and, perhaps increasingly, for the elderly) is the major factor inhibiting women’s labour force participation, and (iii) that large gender wage gaps exist even for women without care responsibilities. These findings suggest that improving opportunities for work–family balance is crucial to helping increase women’s labour force participation, but may do little to close gender wage gaps: other major obstacles also appear to stand in the way of Korean women’s full inclusion in the labour force.
</summary>
<dc:date>2023-05-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Madman or Mad Genius? The International Benefits and Domestic Costs of the Madman Strategy</title>
<link href="https://hdl.handle.net/1721.1/164175" rel="alternate"/>
<author>
<name>Schwartz, Joshua A.</name>
</author>
<id>https://hdl.handle.net/1721.1/164175</id>
<updated>2025-12-04T03:14:13Z</updated>
<published>2023-05-04T00:00:00Z</published>
<summary type="text">Madman or Mad Genius? The International Benefits and Domestic Costs of the Madman Strategy
Schwartz, Joshua A.
According to the “Madman Theory” outlined by Daniel Ellsberg and Thomas C. Schelling, and embraced by Presidents Richard Nixon and Donald Trump, being perceived as mad can help make seemingly incredible threats—such as starting a nuclear war—more credible. However, recent research has largely concluded that the Madman Theory does not work. In this study, I theorize that the international benefits of the Madman Theory have been underestimated, but also that there are significant domestic barriers associated with adopting such a strategy that undermine its effectiveness. Through a series of five novel survey experiments, I find evidence that perceived madness provides limited advantages in coercive bargaining vis-à-vis foreign adversaries, but it also entails significant domestic costs that potentially erode its efficacy. Overall, this study provides clearer support for the Madman Theory than most previous literature has found, but also breaks new theoretical ground by analyzing the domestic politics of perceived madness.
</summary>
<dc:date>2023-05-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Purrfect Pitch: Exploring Pitch Interval Learning through an Audio-Haptic Interface</title>
<link href="https://hdl.handle.net/1721.1/164174" rel="alternate"/>
<author>
<name>Chin, Sam</name>
</author>
<author>
<name>Fang, Cathy Mengying</name>
</author>
<author>
<name>Singh, Nikhil</name>
</author>
<author>
<name>Ibrahim, Ibrahim</name>
</author>
<author>
<name>Paradiso, Joe</name>
</author>
<author>
<name>Maes, Pattie</name>
</author>
<id>https://hdl.handle.net/1721.1/164174</id>
<updated>2025-12-04T03:13:59Z</updated>
<published>2025-10-09T00:00:00Z</published>
<summary type="text">Purrfect Pitch: Exploring Pitch Interval Learning through an Audio-Haptic Interface
Chin, Sam; Fang, Cathy Mengying; Singh, Nikhil; Ibrahim, Ibrahim; Paradiso, Joe; Maes, Pattie
We introduce Purrfect Pitch, a system consisting of a wearable haptic device and a custom-designed learning interface for musical ear training. We focus on the ability to identify pitch intervals (sequences of two musical notes), a perceptually ambiguous task that usually requires rote training. With our system, users hear two tones while simultaneously receiving two corresponding vibrotactile stimuli on the back. Providing haptic feedback on the back makes the auditory distance between tones salient, and the back-worn design is comfortable and unobtrusive. During training, users receive multi-sensory feedback from our system and input their guessed interval value on our web-based learning interface. Our study with 18 participants shows that our system enables novice learners to identify intervals more accurately and consistently than those who only received audio feedback, even after removing the haptic feedback. We also share further insights on designing a multisensory learning system.
AHs 2025, Masdar City, Abu Dhabi, United Arab Emirates
</summary>
<dc:date>2025-10-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Teaching AI to Feel: A Collaborative, Full-Body Exploration of Emotive Communication</title>
<link href="https://hdl.handle.net/1721.1/164173" rel="alternate"/>
<author>
<name>Lemus, Lissette</name>
</author>
<author>
<name>Pilcher, Kris</name>
</author>
<author>
<name>Sprengel, Holger</name>
</author>
<author>
<name>Sabater-Mir, Jordi</name>
</author>
<author>
<name>Tütüncü, Esen K.</name>
</author>
<id>https://hdl.handle.net/1721.1/164173</id>
<updated>2025-12-04T03:13:56Z</updated>
<published>2025-10-27T00:00:00Z</published>
<summary type="text">Teaching AI to Feel: A Collaborative, Full-Body Exploration of Emotive Communication
Lemus, Lissette; Pilcher, Kris; Sprengel, Holger; Sabater-Mir, Jordi; Tütüncü, Esen K.
Commonaiverse is an interactive installation exploring human emotions through full-body motion tracking and real-time AI feedback. Participants engage in three phases: Teaching, Exploration and the Cosmos Phase, collaboratively expressing and interpreting emotions with the system. The installation integrates MoveNet for precise motion tracking and a multi-recommender AI system to analyze emotional states dynamically, responding with adaptive audiovisual outputs. By shifting from top-down emotion classification to participant-driven, culturally diverse definitions, we highlight new pathways for inclusive, ethical affective computing. We discuss how this collaborative, out-of-the-box approach pushes multimedia research beyond single-user facial analysis toward a more embodied, co-created paradigm of emotional AI. Furthermore, we reflect on how this reimagined framework fosters user agency, reduces bias, and opens avenues for advanced interactive applications.
MM ’25, October 27–31, 2025, Dublin, Ireland
</summary>
<dc:date>2025-10-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Personalized Animations for Affective Feedback: Generative AI Helps to Visualize Skin Conductance</title>
<link href="https://hdl.handle.net/1721.1/164172" rel="alternate"/>
<author>
<name>Scheirer, Jocelyn</name>
</author>
<author>
<name>Picard, Rosalind</name>
</author>
<author>
<name>Cantrell, Aubrey</name>
</author>
<id>https://hdl.handle.net/1721.1/164172</id>
<updated>2025-12-04T03:13:49Z</updated>
<published>2025-10-26T00:00:00Z</published>
<summary type="text">Personalized Animations for Affective Feedback: Generative AI Helps to Visualize Skin Conductance
Scheirer, Jocelyn; Picard, Rosalind; Cantrell, Aubrey
Biofeedback interfaces traditionally rely on abstract visualizations,&#13;
tones, or haptics to convey physiological states—but these often lack&#13;
personal relevance, emotional salience, and engagement. In this&#13;
paper, we present a novel system that bridges wearable sensing and&#13;
generative AI to create real-time, personalized animated&#13;
biofeedback experiences. Users describe emotionally meaningful&#13;
objects or scenes to a language model in our system, which outputs&#13;
generate customized Processing animations. These animations are&#13;
then dynamically driven by electrodermal activity (EDA) signals&#13;
from a wrist sensor. We co-design and evaluate the system with&#13;
autistic adults, many of whom have unique “special interests” that&#13;
are likely to engage them more than a one-sized-fits-all&#13;
visualization. Many of these individuals also have difficulty with&#13;
interoception -- feeling or sensing their own internal and&#13;
physiological state changes. We built this tool to transform passive&#13;
physiological monitoring into an interactive multimedia&#13;
experience, where the visual representation of the body is authored&#13;
by the user. We introduce a prompt-engineered GPT-based&#13;
interface that streamlines code generation, sensor mapping, and&#13;
iterative refinement, requiring no prior coding expertise. The&#13;
technical pipeline we built includes signal filtering, dynamic&#13;
parameter mapping, and natural language-based customization—&#13;
delivering a real-time, visually immersive feedback loop. We report&#13;
on initial case studies with 12 autistic adults using the system,&#13;
which highlight both the expressive potential and individual&#13;
variability of user responses, reinforcing the need for adaptable&#13;
multimedia frameworks in health technologies. By merging realtime physiological data with generative animation and natural&#13;
language interaction, this work expands the creative frontier of&#13;
personalized affective biofeedback. We also address ethical&#13;
challenges arising from using AI with physiological sensors.
MRAC '25, October 27–28, 2025, Dublin, Ireland
</summary>
<dc:date>2025-10-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hands-on Strategies for Teaching Social and Societal Impacts of Computing</title>
<link href="https://hdl.handle.net/1721.1/164171" rel="alternate"/>
<author>
<name>Kurkovsky, Stan</name>
</author>
<author>
<name>Nnamani, Manee Ngozi</name>
</author>
<author>
<name>Hunter, Aaron</name>
</author>
<author>
<name>Sobomehin, Olatunde</name>
</author>
<author>
<name>Braught, Grant</name>
</author>
<author>
<name>Goldweber, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/164171</id>
<updated>2025-12-04T03:13:47Z</updated>
<published>2025-10-21T00:00:00Z</published>
<summary type="text">Hands-on Strategies for Teaching Social and Societal Impacts of Computing
Kurkovsky, Stan; Nnamani, Manee Ngozi; Hunter, Aaron; Sobomehin, Olatunde; Braught, Grant; Goldweber, Michael
The topic of hands-on strategies for teaching the social and societal impacts of computing is of growing interest to the computer&#13;
science education community because it addresses a critical gap in&#13;
traditional CS curricula [7]. While technical skills remain central,&#13;
educators increasingly recognize the need to prepare students for&#13;
the ethical, social, and human-centered challenges posed by modern computing technologies. From AI-driven decision-making to&#13;
digital accessibility and data privacy, computing profoundly affects&#13;
individuals and communities, making it essential for students to&#13;
engage with these issues through experiential learning [12].&#13;
Different viewpoints on this topic emerge based on pedagogical&#13;
approaches, disciplinary perspectives, and technological optimism&#13;
or skepticism. Some educators advocate for integrating servicelearning and community-based projects, arguing that real-world&#13;
engagement fosters empathy and ethical awareness. Others emphasize case studies and simulations, providing structured exposure to&#13;
societal challenges without the unpredictability of external partnerships. Additionally, viewpoints may diverge on the role of AI: while&#13;
some see AI tools as an opportunity to enhance social good, others&#13;
worry they may exacerbate biases and reduce human agency in&#13;
computing. Despite these differences, there is broad agreement that&#13;
computing education must go beyond technical training to include&#13;
a deeper understanding of computing’s role in society.
CompEd 2025, October 21–25, 2025, Gaborone, Botswana
</summary>
<dc:date>2025-10-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interactive Storybooks for Early AI Literacy</title>
<link href="https://hdl.handle.net/1721.1/164170" rel="alternate"/>
<author>
<name>Pu, Isabella</name>
</author>
<id>https://hdl.handle.net/1721.1/164170</id>
<updated>2025-12-04T03:09:39Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Interactive Storybooks for Early AI Literacy
Pu, Isabella
As artificial intelligence (AI) becomes increasingly present in children's everyday environments, there is an urgent need for developmentally appropriate tools that help young learners understand and shape these technologies. To be effective, these tools must not only successfully convey complex concepts but also engage children in ways that are meaningful, accessible, and fun.&#13;
&#13;
This thesis introduces the Interactive Storybooks for Early AI Literacy, a series of ten interactive storybooks for children ages 6–9 that combine narrative, mini-games, and scaffolded creative AI interactions to teach core AI and robotics concepts. The storybooks follow an overarching narrative featuring a friendly robot, Doodlebot, who must learn creative tasks with the child's help, framing the child as an AI designer and introducing them to the concept of training AI models through the narrative. The storybooks additionally contain interactive games and activities which help keep kids excited and engaged, while providing structured opportunities to experiment with and explore AI creation tools.&#13;
&#13;
First, a pilot study was conducted at a community summer camp with four Interactive Storybooks. Children expressed joy and pride in their AI creations, used the characters as emotional anchors for learning, and began to successfully articulate key AI concepts. Four engagement archetypes emerged: the Reader, the Gamer, the Showcaser, and the Social Connector, each representing a distinct way children interacted with the storybooks. However, despite behavioral signs of engagement, many children described the narrative portions as boring and claimed to prefer games.&#13;
&#13;
To explore this tension, a home deployment study compared two versions of the system: a "Books" condition with the full narrative and a "Games" condition with only instructional text. Both conditions included the same mini-games and AI interactions. While children in both groups reported similar levels of enjoyment, those in the Books condition showed significantly higher learning gains, greater increases in perceived knowledge and confidence, and stronger connections to the characters. Children in the Books condition also more frequently referenced the narrative when describing AI concepts and demonstrated more creative and iterative behavior during and after gameplay.&#13;
&#13;
Overall, these findings suggest that combining storytelling, gameplay, and creative AI interactions is an effective and engaging approach to teaching AI and robotics to young children. Narrative context appears to support concept recall, deepen emotional investment, and promote thoughtful experimentation, even with complex concepts for this age group, like AI and robotics. Based on insights from both studies, this thesis concludes with six design recommendations for creating developmentally appropriate, emotionally resonant AI education tools for early learners using narrative and play.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Decentralized Machine Learning over Fragmented Data</title>
<link href="https://hdl.handle.net/1721.1/164169" rel="alternate"/>
<author>
<name>Singh, Abhishek</name>
</author>
<id>https://hdl.handle.net/1721.1/164169</id>
<updated>2025-12-04T03:07:38Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Decentralized Machine Learning over Fragmented Data
Singh, Abhishek
The remarkable scaling of data and computation has unlocked unprecedented capabilities in text and image generation, raising the question: Why hasn’t healthcare seen similar breakthroughs? This disparity stems primarily from healthcare data being fragmented across thousands of institutions, each safeguarding patient records in regulatory-compliant silos. The problem is not limited to healthcare but extends to other industries with fragmented data across institutions and individuals. Instead of centralizing various datasets to solve the fragmentation problem, which raises regulatory and ethical concerns, this thesis proposes systems and algorithms to decentralize the machine learning pipeline. Current approaches in this area have centered around Federated Learning (FL), which enables model training over distributed data. However, FL’s dependence on central coordination and inflexibility with heterogeneous systems limit its applicability in healthcare settings. Motivated by these challenges, I explore the following three core themes:&#13;
&#13;
1) Coordination – Today’s coordination algorithms typically rely on static rules or randomized communication, approaches that turn out to be sub-optimal when data heterogeneity is high. I present a new system and a benchmark framework that enables systematic assessment of different coordination algorithms. Next, I propose an adaptive coordination algorithm that leverages historical performance and learning dynamics to improve coordination.&#13;
&#13;
2) Heterogeneity – Data owners can vary significantly in their data distributions, computational resources, and privacy requirements. To address this heterogeneity, I turn the focus from the traditionally protected training phase to securing the critical inference process. Next, I develop techniques for distributed training that adapt to heterogeneous computational capabilities across different agents.&#13;
&#13;
3) Scalability – Enabling scaling in decentralized ML requires addressing three key challenges: parallelization, synchronization, and self-scaling. While parallelization has advanced significantly, the other two remain challenging. I present a framework for offline collaboration through sanitized, synthetic datasets that eliminates constant synchronization needs while preserving privacy.&#13;
&#13;
This thesis identifies and addresses some of the bottlenecks along these three core themes through a complementary set of solutions: adaptive coordination, heterogeneity-aware training, and scalable collaboration. Together, these building blocks can enable a practical framework for unlocking data silos across institutions.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interplay between spatial structure and competition in ecological communities</title>
<link href="https://hdl.handle.net/1721.1/164168" rel="alternate"/>
<author>
<name>Swartz, Daniel W.</name>
</author>
<id>https://hdl.handle.net/1721.1/164168</id>
<updated>2025-12-04T03:07:23Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Interplay between spatial structure and competition in ecological communities
Swartz, Daniel W.
Ecology, much like physics, has a long history of theoretical contribution. In this thesis, we take a physics approach to describing ecological communities, searching for simple, emergent features that can generalize beyond specific models of community dynamics. Unifying all of the models we study is an underlying spatial structure, leading to a richer set of possible behaviors than a typical well-mixed model. We first study the case of a metapopulation, a collection of smaller communities linked by dispersal. We find that when the environment is allowed to fluctuate stochastically, new growth laws emerge at the single species level, and high diversity is achieved in the case with many species. We then study the case of pathogen evolution, again in the metapopulation framework. We find that intermediate dispersal can act as a strong driver of pathogen evolution. We also study what happens as a population of microbes expands into unexplored territory, known as a range expansion. We find that a simple model can capture all morphological phases observed in experiments and predict invasion fitness as a function of local and global competitive ability. We also break a standard assumption in microbial ecology, the isotropy of space, and find that a new sector morphology emerges.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Algorithmic Cookbook of Quantum Science: Quantum and Classical Recipes for Computation</title>
<link href="https://hdl.handle.net/1721.1/164167" rel="alternate"/>
<author>
<name>Martyn, John Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/164167</id>
<updated>2025-12-04T03:07:14Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">The Algorithmic Cookbook of Quantum Science: Quantum and Classical Recipes for Computation
Martyn, John Michael
Since the dawn of science, computation and physics have evolved alongside each other, both driven by a shared quest to solve problems and calculate properties of the natural world. Today, this symbiotic relationship is epitomized in quantum information science, which proposes to use quantum mechanics to solve hard computational problems and develop new paradigms of communication and cryptography. Yet often absent from these developments is a clear, human-interpretable understanding, with many quantum protocols built from inherently quantum concepts (e.g., entanglement, superposition) that defy our classical line of thought and muddle the search for efficient quantum algorithms. Here we show that this search need not be so opaque: simple mathematical tools, namely polynomials and their fundamental theorems, in unison with concepts from classical computing, provide a powerful framework for the design of quantum algorithms. We develop this framework and use it to construct an assortment of quantum algorithms, including methods for quantum simulation, parallel computing, randomized algorithms, and continuousvariable quantum hardware. In illuminating this framework, we find a striking bidirectional flow: just as classical concepts inspire new quantum algorithms, so too can quantum mechanical insights bring about novel methods of classical computing. In this reverse direction, we adopt inherently quantum concepts, such as random compilation and bosonic symmetry, to develop new classical methods, with applications in simulating quantum systems and designing robust neural networks. In aggregate, this thesis provides a compendium of algorithmic techniques for probing quantum systems and solving hard problems, using both quantum and classical tools—an “algorithmic cookbook”—predicated on deep connections between these two domains. The recipes presented here aim to demystify black boxes of quantum information science, and provide a valuable resource for future developments.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Death of Quasiparticles: Strongly Interacting Gapless Phases&#13;
with Fermi Surfaces and Fractional Statistics</title>
<link href="https://hdl.handle.net/1721.1/164166" rel="alternate"/>
<author>
<name>Shi, Zhengyan</name>
</author>
<id>https://hdl.handle.net/1721.1/164166</id>
<updated>2025-12-04T03:07:02Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">The Death of Quasiparticles: Strongly Interacting Gapless Phases&#13;
with Fermi Surfaces and Fractional Statistics
Shi, Zhengyan
The emergence of quasiparticles at low temperature provides a powerful organizing principle for many quantum phases of matter, ranging from conventional magnets and superconductors to exotic insulators with topological order. In this thesis, I describe my research in gapless quantum phases in which the framework of quasiparticles breaks down. The main characters are two categories of gapless phases that feature the interplay between strong interactions and two additional ingredients – Fermi surfaces and fractional statistics. Chapter 2 through Chapter 5 focus on strongly interacting metals with Fermi surfaces. The most salient examples are a class of Hertz-Millis models describing the onset of spontaneous symmetry breaking in a metallic environment. At the quantum critical point, gapless order parameter fluctuations destroy quasiparticles living on the Fermi surface, giving rise to a strongly coupled non-Fermi liquid metal. A key result of these chapters is the identification of an infinite-dimensional symmetry that survives in these non-Fermi liquid metals despite the death of quasiparticles. This infinite-dimensional symmetry and its quantum anomaly lead to a series of non-perturbative results on thermodynamics and transport, which are confirmed by perturbative diagrammatic calculations in special examples. Chapter 6 through Chapter 8 explore quantum phases in which anyonic quasiparticles with fractional statistics play an essential role. When parameters in the system are tuned to close the anyon energy gaps, the original anyons lose their coherence and a variety of novel phases emerge. A highlight in this direction is a new mechanism for topological superconductivity in itinerant abelian and non-abelian anyon fluids, which could make contact with experiments on doped fractional quantum anomalous Hall states in the near future.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Particles Inside Particles: The Flow of Energy in Quarks, Gluons, and Jets</title>
<link href="https://hdl.handle.net/1721.1/164165" rel="alternate"/>
<author>
<name>Alipour-fard, Samuel</name>
</author>
<id>https://hdl.handle.net/1721.1/164165</id>
<updated>2025-12-04T03:07:34Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Particles Inside Particles: The Flow of Energy in Quarks, Gluons, and Jets
Alipour-fard, Samuel
This thesis presents the author’s work in developing probes of the inner structure of jets in high-energy particle collisions. We begin by introducing QCD and the scattering of partons (quarks and gluons), discussing jets as theoretical and experimental proxies for partonic physics, and presenting the partonic cascade model of jet formation and jet substructure. Noting the ubiquitous presence of low-energy pollution in particle collision events, in the forms of hadronization, detector effects, the underlying event (UE), and pileup (PU), we then move towards the modern research area of developing pollution-insensitive probes of jet substructure. Pollution-insensitive features of jet substructure are often accessed theoretically either through jet grooming or energyweighted correlation functions. We present the basics of the modern theory of jet grooming as well as the work of the author in developing the Piranha paradigm for continuous jet grooming, introduced by the author in Ref. [1], and explore the formal and phenomenological benefits of continuous grooming techniques as pollutioninsensitive probes of jet substructure. We introduce the basics of the simplest energy-weighted correlation function – the energy-energy correlator (EEC), which probes angular correlations between particle pairs – and discuss its multi-particle analogues. We focus on the efficient and visually intuitive projected and resolved energy correlators introduced by the author in Ref. [2], which provide computationally-realistic, pollution-insensitive probes of angular many-body correlations in QCD jets. Finally, we exposit the generic theory of energy-weighted observable correlations (EWOCs), introduced by the author in Ref. [3], which utilizes the energy weighting of the EEC to provide pollution-insensitive probes of non-angular correlations within jets.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Solid-state cavity quantum electrodynamics with spin ensembles</title>
<link href="https://hdl.handle.net/1721.1/164164" rel="alternate"/>
<author>
<name>Wang, Hanfeng</name>
</author>
<id>https://hdl.handle.net/1721.1/164164</id>
<updated>2025-12-04T03:07:27Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Solid-state cavity quantum electrodynamics with spin ensembles
Wang, Hanfeng
Quantum sensors have the potential to operate at fundamental physical performance limits. Among various quantum sensing platforms, solid-state spin emitters stand out due to advantageous characteristics such as room-temperature spin polarization and readout, atomic-scale spatial resolution, and extended coherence times. Despite these strengths, traditional optical detection methods exhibit low readout fidelity in solid-state ensembles, severely limiting their achievable sensitivity. This thesis addresses this limitation by coupling a solid-state emitter ensemble to a microwave cavity, forming a cavity quantum electrodynamics system. Our approach eliminates the need for photon collection required by conventional optical readout methods, and the resulting strongly coupled system allows efficient cavity-based probing of the solid-state spin ensemble. By exploiting the hybrid quantum system with cavity quantum electrodynamics, we achieve record-high sensitivity for solid-state quantum sensors, representing a substantial advancement toward achieving fundamental sensing limits.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Expanding the Phase Space of Photons in Matter: From High-Throughput Screening to Atom-by-Atom Engineering</title>
<link href="https://hdl.handle.net/1721.1/164163" rel="alternate"/>
<author>
<name>Ghorashi, Ali</name>
</author>
<id>https://hdl.handle.net/1721.1/164163</id>
<updated>2025-12-04T03:07:29Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Expanding the Phase Space of Photons in Matter: From High-Throughput Screening to Atom-by-Atom Engineering
Ghorashi, Ali
Focusing on the topological band properties of photonic crystals and the plasmonic properties of two-dimensional metals, we seek to answer the question: what is the phase space of photons in matter? For topology, what are the physical parameters that determine whether a given photonic crystal band hosts Dirac points, a non-zero Chern number, or topologically protected corner states? And for plasmons, what are the experimentally addressable ranges of plasmonic dispersions, phase velocities, confinements, and losses? In particular, is it possible to engineer the elusive lossless plasmon? Using high-throughput screening, artificial intelligence, and atom-by-atom engineering through density functional theory, we determine the topological prevalence of photonic bands, propose two systems that evade plasmonic losses through the electron-phonon interaction, and (re)discover general physical laws that govern the geometries of photonic eigenstates.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>On the Sample Efficiency of Data-Driven Decision Making</title>
<link href="https://hdl.handle.net/1721.1/164162" rel="alternate"/>
<author>
<name>Qian, Jian</name>
</author>
<id>https://hdl.handle.net/1721.1/164162</id>
<updated>2025-12-04T03:07:25Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">On the Sample Efficiency of Data-Driven Decision Making
Qian, Jian
This thesis studies the fundamental problem of decision making under uncertainty through the lens of statistical decision theory. We characterize the minimax risk, which captures the sample efficiency required for effective decision making across three key settings: offline estimation with batch data, online estimation with sequential data, and interactive decision making as exemplified by multi-armed bandits and reinforcement learning. The first part of the thesis develops novel algorithmic and theoretical tools to enhance decision making in these regimes and to bridge the gaps between them. We revisit logistic regression in the offline setting and provide guarantees without restrictive boundedness assumptions. We then propose meta-algorithms that reduce online estimation to offline estimation, enabling any offline estimator to be used effectively in online scenarios. Furthermore, we present general-purpose algorithms for interactive decision making problems by leveraging offline or online estimation techniques. The second part of the thesis introduces a unified approach to understanding the fundamental complexity of interactive decision making. We propose the Decision Making with Structured Observation (DMSO) framework, which encompasses bandits, reinforcement learning, and more general settings. Within this framework, we develop a new complexity measure—the Decision-Estimation Coefficient (DEC)—which captures both upper and lower bounds for minimax regret. DEC extends classical notions such as the modulus of continuity to interactive scenarios by introducing an adaptive variant of Le Cam’s method. Finally, we unify the three classical lower bound techniques—Le Cam’s method, Assouad’s lemma, and Fano’s inequality—through a generalized formulation that also incorporates the DEC, offering a comprehensive understanding of the minimax risk in decision making tasks.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Towards achieving power autonomy in soft-actuated micro aerial robots</title>
<link href="https://hdl.handle.net/1721.1/164161" rel="alternate"/>
<author>
<name>Ren, Zhijian</name>
</author>
<id>https://hdl.handle.net/1721.1/164161</id>
<updated>2025-12-04T03:07:20Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Towards achieving power autonomy in soft-actuated micro aerial robots
Ren, Zhijian
Micro aerial robots with insect-like flight capabilities hold immense promise for various applications, including environmental monitoring, precision agriculture, and infrastructure inspection in confined spaces. However, realizing power autonomy in these miniature robotic platforms presents significant challenges due to weight constraints, power density limitations, and inefficient actuation at small scales. This dissertation presents three essential improvements towards achieving power autonomy in soft-actuated micro aerial robots. Our robotic platform is driven by a dielectric elastomer actuator (DEA) and generates lift force through flapping wings, a similar mechanism found in flying insects. First, we implemented a dynamic model to optimize the robot components for pairing with an improved DEA to generate a higher lift force. The robot achieved a peak lift-to-weight ratio of 4.3 and demonstrated a 20-second hovering flight with position and attitude errors smaller than 2.5 cm and 2◦ . Second, we fabricated a lightweight high-voltage boost converter that transformed a 7 V DC input into an AC waveform of 600 V and 400 Hz to drive the actuator. This is the first onboard boost converter that can drive the soft-actuated micro aerial robot to take off, and it represents a substantial achievement in miniaturizing power electronics for microrobots. Third, we took inspiration from the natural autorotation of maple seeds in their slow descent. We implemented the first samara-inspired mechanism on micro aerial robots, enhancing lift generation while maintaining in-flight attitude stability without feedback control. The 1.22-gram vehicle can stably take off in 1 second with a total input thrust of 1 gram-force. These accomplishments provide a pathway towards achieving power autonomy and open opportunities for developing agile, robust, and autonomous micro aerial robots for diverse applications.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Low-Energy Electron-Photon Interactions in a Scanning Electron Microscope</title>
<link href="https://hdl.handle.net/1721.1/164160" rel="alternate"/>
<author>
<name>Simonaitis, John</name>
</author>
<id>https://hdl.handle.net/1721.1/164160</id>
<updated>2025-12-04T03:07:07Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Low-Energy Electron-Photon Interactions in a Scanning Electron Microscope
Simonaitis, John
The interaction of free-electrons with matter and light is among the most fundamental of processes in nature. From the use of free-electrons for atomic imaging,  to their use in the generation of high-intensity, tunable light in synchrotrons, the physics of unconfined electrons has wide application. In recent years, there has been a new focus on the quantum nature of individual electrons in electron microscopes to enable further improvements in these technologies. This work takes advantage of developments in ultrafast optics, electron spectroscopy, quantum optics, and nanofabrication to explore various electron-electron, electron-photon, and electron-material interactions. In this thesis, we construct a low-energy, ultrafast scanning electron microscope,  using it to explore quantum coherent interactions between electrons, light, and matter.&#13;
&#13;
In Chapter 1, we review the history of free electron experiments and how advances in nanofabrication, low-dimensional materials, and ultrafast optics have opened new opportunities for electron-light interactions to a degree not previously possible. In Chapter 2 we discuss experimental forms of quantum electron microscopy known as interaction-free measurement and electron multi-passing. Chapter 3 details a general theory of electron-photon interactions, including simulations with quantum two-level systems and extended optical nanostructures. In Chapter 4, we design and construct a second microscope with ultrafast triggering, an electron spectrometer with sub-eV resolution, nanostructured interaction regions, and active beam alignment. Chapter 5 explores various experimental results, demonstrating enhanced loss spectroscopy of 2D materials, energy resolution of gold nanoparticle plasmons, as well as spectroscopy of time-tagged cathodoluminescence from optical fibers.  Finally, in chapter 6 we discuss future perspectives of this approach, analyzing the impact a heralded electron source would have on electron microscopy and lithography.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Studies of Jet Modification in Heavy Ion Collisions with the CMS Experiment</title>
<link href="https://hdl.handle.net/1721.1/164159" rel="alternate"/>
<author>
<name>Park, Mary Isabelle</name>
</author>
<id>https://hdl.handle.net/1721.1/164159</id>
<updated>2025-12-04T03:07:09Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Studies of Jet Modification in Heavy Ion Collisions with the CMS Experiment
Park, Mary Isabelle
In the Compact Muon Solenoid (CMS) detector at the Large Hadron Collider (LHC), lead ions are collided at ultra-relativistic velocities to produce Quark-Gluon Plasma (QGP), a state of matter where quarks and gluons are deconfined and move collectively. Jets are produced in high-momentum transfer parton scatterings prior to and independently of QGP formation, and serve as natural probes of its properties. As the high-energy partons pass through the QGP, they lose energy through medium-induced gluon radiation and elastic scattering, resulting in jets that are modified with respect to the vacuum baseline. In this thesis, jet modification is quantified by measuring the jet production cross section as a function of jet radius in inclusive jets and the jet axis decorrelation in jets recoiling from isolated photons in Lead-Lead (PbPb) and Proton-Proton (pp) collisions. Both measurements indicate that effects of medium-induced jet broadening may be balanced by survivor bias in PbPb collisions, potentially due to differences in the magnitude of quenching of wide versus narrow jets. The results underline the importance of constraining the initial jet kinematics with bosons, which are unmodified by the QGP.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Understanding Drivers of Stratospheric Ozone Change and Fingerprinting its Recovery</title>
<link href="https://hdl.handle.net/1721.1/164158" rel="alternate"/>
<author>
<name>Wang, Peidong</name>
</author>
<id>https://hdl.handle.net/1721.1/164158</id>
<updated>2025-12-24T03:27:16Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Understanding Drivers of Stratospheric Ozone Change and Fingerprinting its Recovery
Wang, Peidong
Stratospheric ozone serves as Earth’s natural protective layer, shielding the surface from harmful ultraviolet radiation. The discovery of the Antarctic ozone “hole” in the late 1980s raised significant societal and scientific concern, prompting the rapid regulation of ozonedepleting substances (ODSs) under international treaties. While the signs of ozone recovery have begun, new challenges continue to arise. This thesis investigates three critical factors driving stratospheric ozone changes and influencing the detection of ozone recovery: (1) ODS emissions, (2) chemical chlorine processes, and (3) internal climate variability. With ODS emissions being regulated under the Montreal Protocol and studies now focusing on illicit new production on the order of tens of gigagrams per year, the ocean’s role as both a natural source and sink of ODSs becomes increasingly important. However, these processes have often been overlooked or highly simplified in past ozone assessments. Using a hierarchy of models, from simple box models to global ocean general circulation models, I quantified the ocean’s uptake and release of various ODSs. Chapter 2 examines the ocean’s uptake of chlorofluorocarbons (CFCs), particularly emphasizing its influence on recent illicit CFC emissions estimation. Chapter 3 extends this analysis to include ocean uptake and potential microbial degradation processes, evaluating their effects on emission estimates for various hydrochlorofluorocarbons (HCFCs) and hydrofluorocarbons (HFCs), which are chemical constituents that have been used to replace CFCs. Once these man-made ODSs reach the stratosphere, they are photolyzed to chlorine reservoir species (e.g., HCl and ClONO2), which, through heterogeneous reactions, can transform into reactive chlorine that depletes ozone. While heterogeneous chlorine activation on volcanic ash is well understood, the unprecedented 2020 Australian wildfires raised new questions about chemical processes on smoke particles. This knowledge gap existed because only a few wildfires had injected significant amounts of smoke particles into the stratosphere during the satellite era. Leveraging over 30 years of satellite data, I separated chemical and dynamic processes affecting chlorine reservoir species to quantify chemical chlorine activation across different aerosol types. In Chapter 4, I developed a new approach to quantitatively estimate the onset temperature for chemical chlorine activation after the 2020 Australian wildfire using satellite observations. Chapter 5 applies this method to compare the impact of chemical chlorine activation from two independent wildfire events with that from a series of volcanic eruptions of varying magnitudes. Despite emerging challenges such as illicit emissions and recent wildfires and volcanic eruptions, advancements in observational records, our understanding of ozone chemistry, and computational power have significantly enhanced our ability to quantitatively detect and attribute stratospheric ozone changes. In Chapter 6, I applied a pattern-based “fingerprinting” technique to quantitatively separate the contributions of ODS forcing from other external forcings and internal variabilities in satellite observations. This analysis shows that Antarctic ozone increases cannot be explained by climate internal variability alone, providing strong confidence that ozone recovery is underway, primarily driven by human efforts to reduce ODS emissions.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Light-Induced Collective Interactions in Arrays of Quantum Emitters</title>
<link href="https://hdl.handle.net/1721.1/164157" rel="alternate"/>
<author>
<name>Rubies-Bigorda, Oriol</name>
</author>
<id>https://hdl.handle.net/1721.1/164157</id>
<updated>2025-12-04T03:06:57Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Light-Induced Collective Interactions in Arrays of Quantum Emitters
Rubies-Bigorda, Oriol
The interaction between light and matter has captivated physicists for centuries, from early studies of vision and refraction in ancient Greece to the development of quantum mechanics and quantum electrodynamics in the past century. While the response of a single quantum emitter to light is well understood, the radiative properties of an ensemble of closely spaced emitters are far more intricate. Coupling to a shared electromagnetic environment induces coherent and dissipative interactions between emitters, giving rise to a collective response that cannot be captured by treating them independently. In the regime of few excitations, the system hosts delocalized subradiant states, that is, coherent superpositions that are largely decoupled from the electromagnetic field and thus decay at suppressed rates. While this weak coupling makes subradiant states attractive for quantum technologies, it also renders them difficult to manipulate. At higher excitation densities, the intrinsic nonlinearity of emitters and the exponential growth of the Hilbert space make theoretical and numerical descriptions of the system and its dynamics increasingly challenging. This thesis explores two fundamental questions: How can subradiant and dark states be selectively accessed and harnessed for practical applications in quantum technologies? And how can interacting ensembles of quantum emitters be efficiently simulated to uncover their many-body physics? The first part of the thesis develops protocols for controlling and addressing dark states in free-space and waveguide-coupled atomic arrays, demonstrating their utility in quantum storage and the deterministic generation of entangled photonic states. Incorporating atomic motion, we further show that collective subradiant states can enhance cooling in dense atomic arrays, offering new avenues for controlling motional dynamics. In the second part, we introduce cumulant expansions of the equations of motion as a powerful tool to analytically and numerically investigate collective decay in the many-body regime. We first examine the collective decay of fully excited atomic arrays in free space, characterizing the onset and scaling of the superradiant burst across different geometries. In collaboration with experiments on ultracold erbium atoms in optical lattices, we provide the first direct observations of many-body collective effects in free-space ordered arrays, including early-time superradiant bursts, late-time subradiant tails, and the emergence of atomic correlations throughout the dynamics. Finally, we theoretically and numerically explore the transient formation of multi-excitation subradiant states, and demonstrate how the existence of multiple dissipation channels suppresses steady-state superradiance in extended arrays.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hybrid Core Inductors for High Saturation Capability</title>
<link href="https://hdl.handle.net/1721.1/164156" rel="alternate"/>
<author>
<name>Yang, Rachel S.</name>
</author>
<id>https://hdl.handle.net/1721.1/164156</id>
<updated>2025-12-04T03:06:54Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Hybrid Core Inductors for High Saturation Capability
Yang, Rachel S.
Power electronics are critical for any system requiring electricity and often impact the performance of these systems. In many cases, the performance of power electronics is limited by lossy and large inductors that are constrained by the saturation of their magnetic core material. Such saturation-limited inductors are typically found in power electronics applications where the inductor sees large dc current with relatively small ac ripple, such as EMI filters or converters operating in continuous conduction mode. This thesis investigates two types of inductor designs that can achieve higher saturation capability by combining multiple materials in a single core, enabling these designs to achieve greater energy storage or lower loss than conventional single-material cores. The first design combines a permanent magnet with a soft magnetic material (e.g. ferrite) to form a PM hybrid core. This core achieves higher saturation capability by directing PM flux to oppose winding flux in the ferrite. First-order models, design processes, and other theory for the PM hybrid core are developed in this thesis, and different geometries for this core are explored. Additionally, two PM hybrid core prototypes are presented, one using a pot core geometry and one using a modified E core geometry. The PM hybrid pot core prototype achieves 70% more energy storage or 50% of the dc loss versus comparable ferrite prototypes, while the PM hybrid E core prototype achieves 30% more energy storage or a minimum of 52% of the total loss versus comparable ferrite prototypes. The second design pairs a low-frequency, high-saturation material (e.g. steel) with a low-saturation, highfrequency material (e.g. ferrite) to form a steel hybrid core. This core achieves higher saturation capability by directing most of the dc flux to the steel and all of the ac flux to the ferrite, enabling the core to leverage both materials’ advantages while avoiding their detriments. First-order models and design processes for the steel hybrid core are developed in this thesis. An example steel hybrid core design using a pot core is also presented. This design can achieve 220% more energy storage versus a comparable ferrite prototype, and it may achieve lower loss. Its performance, though, is sensitive to manufacturing and assembly imperfections. In this thesis, both the PM hybrid and steel hybrid cores are demonstrated to have great potential in achieving high saturation capability. By leveraging these hybrid cores, inductor designs can achieve greater energy storage density or lower loss and thus enable higher performance power electronics.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantum Gas Microscopy of Bosonic Correlations in the Continuum</title>
<link href="https://hdl.handle.net/1721.1/164155" rel="alternate"/>
<author>
<name>Xiang, Jinggang</name>
</author>
<id>https://hdl.handle.net/1721.1/164155</id>
<updated>2025-12-04T03:06:49Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Quantum Gas Microscopy of Bosonic Correlations in the Continuum
Xiang, Jinggang
This thesis details the complete upgrade and renovation of an existing experimental platform into a high-resolution quantum gas microscope for ultracold 87Rb atoms. Quantum gas microscopes enable site-resolved imaging, providing unprecedented access to quantum statistical effects and many-body phenomena. While such instruments are often employed to study physics in optical lattices, we have innovatively adapted our apparatus to investigate bulk system behavior. A major part of this project involved upgrading the scientific apparatus and retrofitting the previous system. We introduced new optical components, including a high-NA objective, and improved the vacuum system for better optical access. Extensive lab renovations, from upgrading the optical table to reorganizing the laser and imaging setups, were carried out to enhance mechanical and thermal stability. Rigorous optical benchmarking confirmed that the objective achieves diffractionlimited imaging, which is critical for resolving single atoms. This capability allowed us to detect density fluctuations at the scale of the thermal de Broglie wavelength in a quasi-two-dimensional gas of 87Rb atoms. In an experiment resembling Hanbury Brown and Twiss interferometry, we measured a 30% enhancement in the second-order correlation function in situ, demonstrating strong bosonic bunching. This outcome underscores the microscope’s precision and the importance of high-resolution imaging in capturing subtle quantum statistical effects. The successful realization of this apparatus demonstrates the utility of quantum gas microscopes in probing bulk systems. With this new platform in place, future studies can explore critical phenomena, many-body correlations, matter-wave emission, and quantum simulations with cold atoms.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurement of Cosmic Ray Lithium Isotopes Using the&#13;
Alpha Magnetic Spectrometer</title>
<link href="https://hdl.handle.net/1721.1/164154" rel="alternate"/>
<author>
<name>LaVecchia, Gianni</name>
</author>
<id>https://hdl.handle.net/1721.1/164154</id>
<updated>2025-12-04T03:06:51Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Measurement of Cosmic Ray Lithium Isotopes Using the&#13;
Alpha Magnetic Spectrometer
LaVecchia, Gianni
The study of cosmic rays and their properties provides insight into the origins of our universe and is a unique lens on the nuclear physics of the cosmos. The identification of cosmic ray isotopes poses a particular challenge, as it requires the measurement of multiple observables to a high degree of accuracy for the deduction of nuclear mass. Using the unique detection capabilities of the Alpha Magnetic Spectrometer (AMS), the isotope fluxes of cosmic ray lithium in the rigidity range of 1.92 to 25 GV are presented. This work is based on 0.97 million ⁶Li and 1.04 million ⁷Li nuclei collected by the AMS over a 12.5 year period, and improves the error and extent of existing measurements by a factor of 10. These results lead to the conclusion that there is no sizable primary component in cosmic ray ⁷Li. The&#13;
improvements to the AMS velocity measurement establishes the groundwork for future cosmic ray isotope measurements.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Metrics, Muons, Moments, Models, Machine Learning, Measurements, and More: A Manifesto on Collider Physics</title>
<link href="https://hdl.handle.net/1721.1/164153" rel="alternate"/>
<author>
<name>Gambhir, Rikab</name>
</author>
<id>https://hdl.handle.net/1721.1/164153</id>
<updated>2025-12-04T03:05:49Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Metrics, Muons, Moments, Models, Machine Learning, Measurements, and More: A Manifesto on Collider Physics
Gambhir, Rikab
The interface between particle theory and particle experiments is essential to improving our understanding of the Standard Model and looking for new physics beyond it. At this interface lies a complicated web of complex and expensive simulations that cannot fully be trusted, experimental and theoretical uncertainties, overwhelmingly large amounts of data, all while we have yet to find any deviations from the Standard Model.&#13;
&#13;
In this thesis, we propose strategies for improving the theory ↔ experiment pipeline at all stages. We first show how modern Machine Learning and statistical techniques can be used to improve the calibration and resolution of particle detectors in a robust way, which can lead to improved measurement precision. We then develop brand new classes of measurable observables based on the principle of infrared-and-collinear-safety, geometry, and machine learning, which come with guarantees about their theoretical calculability and interpretability, in turn motivating measurements at collider experiments. Finally, we then present two complementary approaches to search for new physics: one, in the form of an experimental proposal for a muon beam dump experiment that is viable alongside a full future collider program; and the other, in the form of machine-learning based anomaly detection to search for subtle signals in already-published data.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Practical Algorithms for Modeling Causality to Accelerate Scientific Discovery</title>
<link href="https://hdl.handle.net/1721.1/164152" rel="alternate"/>
<author>
<name>Wu, Menghua</name>
</author>
<id>https://hdl.handle.net/1721.1/164152</id>
<updated>2025-12-04T03:06:44Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Practical Algorithms for Modeling Causality to Accelerate Scientific Discovery
Wu, Menghua
Scientific research revolves around the discovery and validation of causal relationships between variables. Machine learning has the potential to increase the efficiency of this process by proposing novel hypotheses from data observations, or by designing experiments that maximize success rate. This thesis addresses these problems through pragmatic approaches, designed to model large systems and incorporate rich domain knowledge. These algorithms are applied to use cases in molecular biology and drug discovery, which highlight their potential to inform efficient experiment design and to automate the analysis of experimental results.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Recycling and Regeneration of Spent Perfusion Media via Ion&#13;
Concentration Polarization</title>
<link href="https://hdl.handle.net/1721.1/164151" rel="alternate"/>
<author>
<name>Wynne, Eric Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/164151</id>
<updated>2025-12-04T03:06:09Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Recycling and Regeneration of Spent Perfusion Media via Ion&#13;
Concentration Polarization
Wynne, Eric Michael
The widespread adoption of monoclonal antibody therapies is often constrained by their high prices, which can limit accessibility, particularly for patients in low- and middle-income countries. Addressing this economic barrier is crucial to ensure that life-saving treatments can reach all who need them. We present a series of bioprocessing innovations designed to reduce the cost of monoclonal antibody manufacturing and improve global access to these critical therapeutics. The work focuses on developing technologies for media regeneration and recycling, with the goal of reducing the economic and environmental impact of cell culture media in perfusion mammalian cell culture.&#13;
We demonstrate a microfluidic separation device engineered to selectively remove metabolic waste products—specifically ammonia and lactate—from spent media using ion concentration polarization. Building on this foundation, a scalable millifluidic system was developed to enable higher-throughput waste removal. We characterized the impact of media recycling upon batch and perfusion cell cultures. We devised a nutrient supplementation strategy to create ‘regenerated’ media that minimized any effect on cell growth and productivity compared to fresh media.&#13;
To support continuous manufacturing, a perfusion culture system incorporating a microfluidic spiral cell retention device and continuous cell bleed was established, and stable performance was maintained over extended durations. A further innovation introduced a multi-stage waste recovery system that increased media regeneration yield to 87.5%. This recovery rate enabled a self-recycling perfusion bioreactor in which 75% of the media feed was regenerated, without significant impact on cell growth, productivity, or product quality.&#13;
Together, these advances establish a novel biomanufacturing platform that combines electrokinetic waste removal with media regeneration and recycling. The approach is broadly adaptable to mammalian cell culture processes and offers a promising path toward more sustainable, cost-effective, and environmentally responsible production of monoclonal antibodies and other biologics.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Scaling Cooperative Intelligence via Inverse Planning and Probabilistic Programming</title>
<link href="https://hdl.handle.net/1721.1/164150" rel="alternate"/>
<author>
<name>Zhi-Xuan, Tan</name>
</author>
<id>https://hdl.handle.net/1721.1/164150</id>
<updated>2025-12-04T03:06:42Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Scaling Cooperative Intelligence via Inverse Planning and Probabilistic Programming
Zhi-Xuan, Tan
How can we build cooperative machines that model and understand human minds — machines that assist us with our goals, coordinate on plans, infer the intentions behind our words, and even learn our norms and values? This thesis presents a scalable model-based approach to building such systems via inverse planning and probabilistic programming. First, we introduce a probabilistic programming architecture that implements a Bayesian theory of mind. This architecture, Sequential Inverse Plan Search (SIPS), performs online inference of human goals and plans by inverting a Bayesian model of incremental human planning. By combining high-performance symbolic planners with sequential Monte Carlo (SMC) inference, SIPS achieves faster-than-real-time speed, while scaling to hundreds of possible goals, and remaining robust to human mistakes due to boundedly-rational planning. Second, we present Cooperative Language-guided Inverse Plan Search (CLIPS), a system that integrates SIPS with large language models (LLMs) to model communicative cooperation. By using LLMs as likelihood functions within probabilistic programs, CLIPS can infer human goals from ambiguous instructions, then provide uncertainty-aware assistance with much higher levels of reliability than LLMs can on their own. In addition, CLIPS can be used to infer the shared intentions of communicating agents from their actions and words. Third, we show how inverse planning can model the acquisition of social normativity, formalizing norm-guided societal behavior as a norm-augmented stochastic game (NSG). In NSGs, agents assume that society follows a shared set of social norms, and infer these norms from the actions of other agents. By doing so, agents can rapidly learn cooperative social norms using orders of magnitude less data than model-free approaches. Finally, we present advances in probabilistic programming infrastructure that have enabled architectures such as SIPS and CLIPS. Through interfaces for programmable SMC and probabilistic programming with LLMs, developers can readily compose modeling and inference subroutines when designing probabilistically coherent intelligent systems. Together, these innovations demonstrate the feasibility and scalability of rational AI engineering for cooperatively intelligent machines, while illuminating the computational and algorithmic foundations of human cooperative intelligence.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Atomistic Study of Traveling Skyrmions in Multi-Sublattice Magnetic Materials</title>
<link href="https://hdl.handle.net/1721.1/164149" rel="alternate"/>
<author>
<name>Tremsina, Elizaveta A.</name>
</author>
<id>https://hdl.handle.net/1721.1/164149</id>
<updated>2025-12-04T03:05:19Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Atomistic Study of Traveling Skyrmions in Multi-Sublattice Magnetic Materials
Tremsina, Elizaveta A.
The development of novel energy-efficient computing hardware is imperative for the reduction of the carbon footprint and for the extension of computing, mobile and wearable device lifespan. Recent advances have been focused on turning to novel material systems, and one such avenue is magnetic thin films. Bits of information can be encoded by magnetic twisted textures called skyrmions, which can be efficiently driven by applying electrical current. Recently, emphasis has been placed on investigating antiferromagnetic and ferrimagnetic skyrmions, as opposed to the single-sublattice ferromagnetic ones studied earlier, due to their potential for more rapid dynamics and magnetic stability. However, there is a pressing need for a thorough and detailed understanding of the intricacies of skyrmion motion, in particular, limiting velocity, optimization of trajectory, controlled mobility and, notably, the observed dynamic distortions of skyrmion profiles. For this reason, experimental studies are simply not enough to provide a complete picture, since the material parameter space for systems hosting skyrmions is quite large. We perform a comprehensive study combining simulation-based as well as analytical approaches, of the spin-orbit torque motion of skyrmions in a wide host of magnetic materials, ranging from crystalline antiferromagnetic to ferrimagnetic, to ferromagnetic. We systematically analyze the relationship between physical distortions of the skyrmion profiles, based on the action of local Thiele forces, and internal elastic tension forces, providing a quantitative and nuanced explanation of these effects. These results expand the understanding of fundamental properties of magnetic skyrmions, as well as their potential use in spintronics applications.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Transformative Lenses: Empowering Learners with New Perspectives Using Generative AI and Augmented Reality</title>
<link href="https://hdl.handle.net/1721.1/164148" rel="alternate"/>
<author>
<name>Leong, Joanne Sau Ling</name>
</author>
<id>https://hdl.handle.net/1721.1/164148</id>
<updated>2025-12-04T03:06:32Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Transformative Lenses: Empowering Learners with New Perspectives Using Generative AI and Augmented Reality
Leong, Joanne Sau Ling
Learning is a fundamental human drive that has been shaped by technological advancements over the years. The emergence of generative AI marks a profound shift—its capacity to produce text, images, and video challenges long‐held beliefs about what only humans could create. This shift creates new opportunities for learning, including enabling the design of more customized and personalized learning experiences. Recognizing that learning is deeply influenced by our perceptions of ourselves, others, and our materials and environments, I propose creating transformative lenses powered by generative AI and augmented reality (AR) to adapt what learners perceive, as a means to empower them with new perspectives. I design and implement a set of novel interactive systems and experiences as case studies that address factors including creativity, communication, and motivation. Studying the use of these systems, I gather early evidence that such lenses can help people to overcome their own limiting thoughts and emotions to move towards realizing their full potential. Reflecting on these case studies, I distill key considerations for designing and applying transformative lenses. Finally, I discuss the broader implications of this work at the evolving intersection of generative AI and learning.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Language Models as Opinion Models: Techniques and Applications</title>
<link href="https://hdl.handle.net/1721.1/164147" rel="alternate"/>
<author>
<name>Brannon, William</name>
</author>
<id>https://hdl.handle.net/1721.1/164147</id>
<updated>2025-12-04T03:06:52Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Language Models as Opinion Models: Techniques and Applications
Brannon, William
Real-time social media platforms now host the news cycle and shape public opinion, while large language models (LLMs) give us new tools to observe and predict those shifts. This dissertation links the new affordances of social media with the predictive power of LLMs to explain -- and forecast -- opinion change. We first quantify the dynamics of news on an influential social platform, then develop LLM-based tools to forecast persuasion and predict heterogeneous treatment effects (HTEs).&#13;
&#13;
Study I — Media tempo and tone. Using 518,000 hours of U.S. talk-radio broadcasts and 26.6 million tweets from elite and mass users, we show that Twitter discourse (i) moves faster at both take-off and fade-out stages of a news event and (ii) sustains greater outrage than radio – despite radio’s often explicitly outrage-focused business model. To our knowledge, this is the first large-scale, data-driven comparison between Twitter and traditional media of both outrage levels and the rate of decay of attention to news.&#13;
&#13;
Study II — Zero-shot persuasion forecasting. Across a diverse set of 28 randomized experiments, LLM-based methods outperform an ensemble of strong baselines at predicting HTEs and deliver good performance at predicting average treatment effects (ATEs) — all without any experiment-specific fine-tuning.&#13;
&#13;
Study III — Transfer and scaling. Fine-tuning LLMs on contemporaneous news coverage boosts HTE (and ATE) prediction performance greatly, to more than 3x baseline performance. A new minibatch-moment-matching (M3) objective lets us train a 400M-parameter model to nearly match the HTE prediction performance of an 8B model at a fraction of the inference cost. Transfer, however, falters out of distribution on held-out experiments and demographic groups, lending support to contextual theories of persuasion.&#13;
&#13;
Overall, we (i) quantify how platform affordances shape the tone and tempo of public discourse, (ii) introduce LLM-based methods that make causal experiments more sample-efficient, and (iii) chart the limits of transfer learning for opinion prediction. Our findings provide practical tools for HTE prediction and help researchers anticipate persuasion dynamics in a media landscape shaped by both humans and machines.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Across the Scales of the Nucleus: Understanding Short Range Correlations from Medium Modification to Probe Independence</title>
<link href="https://hdl.handle.net/1721.1/164146" rel="alternate"/>
<author>
<name>Denniston, Andrew W.</name>
</author>
<id>https://hdl.handle.net/1721.1/164146</id>
<updated>2025-12-04T03:06:28Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Across the Scales of the Nucleus: Understanding Short Range Correlations from Medium Modification to Probe Independence
Denniston, Andrew W.
The atomic nucleus presents an intricate system due to the non-linear forces described by Quantum Chromodynamics (QCD) that govern its structure. The range of scales involved is remarkable; the most massive nuclei weigh approximately five orders of magnitude more than the quarks that compose them. The nucleus can be analyzed at various levels, from quarks to hadrons to the nucleus as a whole. Short-Range Correlations (SRCs) within the nucleus play a significant role that spans these diverse scales. At the most fundamental level, SRCs influence the interaction between nucleons. The nucleon-nucleon (NN) interaction, arising from QCD, is crucial in determining nuclear properties. SRCs serve as valuable probes for measuring this NN interaction, as the nucleons within SRCs become effectively decoupled from the rest of the nucleus. Multiple experimental techniques, including electron scattering, have been employed to investigate the NN interaction through SRCs. However, our first project demonstrates that inclusive measurements alone are inadequate to constrain this interaction fully. Moving to the scale of the nucleus, SRCs contribute to the high-momentum tail of the nuclear spectral function. While the low-momentum region is characterized by nucleons exhibiting bulk properties, nucleons begin to pair into SRCs at higher momenta. Our research aims to bridge the understanding between the mean-field portion of the nucleus and its high-momentum SRC components. Additionally, SRCs affect the quark structure of protons, as evidenced by the EMC effect, which indicates that quarks behave differently when protons are embedded within a nucleus—an effect referred to as medium modification. This thesis explores the correlation between SRCs and medium modification across various experimental setups. Finally, we seek to establish an interpretation of the nuclear ground-state. Accomplishing this requires demonstrating that our SRC observables are independent of the probe’s scale and scheme. The concluding project of this thesis illustrates how we utilize triple coincidence quasi-elastic scattering across a range of (Q2 ) values to develop a model-dependent framework for understanding SRC distributions within the nucleus’s ground-state wavefunction.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Discovering and Engineering the Computation Underlying Large Intelligent Agents</title>
<link href="https://hdl.handle.net/1721.1/164145" rel="alternate"/>
<author>
<name>Sharma, Pratyusha</name>
</author>
<id>https://hdl.handle.net/1721.1/164145</id>
<updated>2025-12-04T03:06:47Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Discovering and Engineering the Computation Underlying Large Intelligent Agents
Sharma, Pratyusha
The richness of language and intelligent behavior has often been attributed to latent compositional structure. Can we build tools for discovering how deep networks learn and represent this latent structure implicitly? And more importantly, can we use this knowledge to improve generalization in largely structure-less general purpose models or refine our understanding of the world they describe? In this dissertation, I present three perspectives to answer these questions. First, I present experimental methods to functionally characterize the space of learnt solutions in LLMs and demonstrate how this understanding can be used to improve their empirical generalization in a gradient free manner, sometimes by as much as 30% points on language understanding benchmarks. Following that, I show how to decipher the structure of another (black box) language-like system, the naturally arising communication system of sperm whales in the wild, discovering for the first time a unique combinatorial communication system. Finally, I apply insights from these results to equip embodied agents with a latent language of thought—hierarchical and compositional—and show how it can enable long-horizon reasoning and planning in these systems. This dissertation ultimately aims to bridge the gap between natural and artificial intelligence, offering new insights into both the fundamental nature of communication in complex biological organisms in the wild and the development of more powerful, and improved AI systems. A key pattern in the discoveries in this thesis has been how simple structures enable complex externalized behaviors in both biological organisms and AI systems.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Volume Mount Devices</title>
<link href="https://hdl.handle.net/1721.1/164144" rel="alternate"/>
<author>
<name>Han, Alan</name>
</author>
<id>https://hdl.handle.net/1721.1/164144</id>
<updated>2025-12-04T03:09:35Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Volume Mount Devices
Han, Alan
As Moore's Law ends and AI demands increasingly tax our climate and resources, the limitations of two-dimensional electronics integration have become critical bottlenecks. Surface-mount devices (SMDs) remain entrenched in industry practice despite being insufficient for today's computing challenges and sustainability needs. This thesis introduces the volume mount device (VMD), a three-dimensional electronics packaging standard that bypasses the traditional die-to-server stack while offering a scalable, reversible framework inspired by natural ecosystems' circularity.&#13;
The VMD approach embeds both electrical function and mechanical structure into modular elements that assemble freely in 3D space. Rather than building circuits on planar PCBs, this system constructs functional circuits by linking components into a self-constraining lattice architecture. My current implementation leverages existing supply chains by incorporating SMD components on small tile PCBs, while establishing a pathway toward eventually replacing SMDs at the IC packaging level.&#13;
I developed a hybrid assembly system combining 3D printing and pick-and-place automation to build multi-layered electronic assemblies efficiently. Where prior work achieved only tens of parts at hundreds of components per hour (CPH), my system demonstrates automated assembly of hundreds of integrated elements at approximately 1000 CPH. I evaluate various geometric configurations, assess performance overhead compared to conventional approaches, and develop cost-effective, self-aligning connector interfaces for reliable joints—creating a foundation for electronics systems that can be assembled, disassembled, and reassembled as needed while improving resilience against supply chain disruptions.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Generative Diffusion Models Towards De Novo Protein Design</title>
<link href="https://hdl.handle.net/1721.1/164143" rel="alternate"/>
<author>
<name>Yim, Jason</name>
</author>
<id>https://hdl.handle.net/1721.1/164143</id>
<updated>2025-12-04T03:06:39Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Generative Diffusion Models Towards De Novo Protein Design
Yim, Jason
De novo protein design aims to generate proteins with desired functions by rationally engineering novel protein structures and sequences. The structure requires modeling continuous 3D coordinates of atoms with rigid biochemical constraints of the polymer chain while the sequence is a series of discrete amino acids that should fold into a plausible structure. Understanding the protein function-structure-sequence relationship necessary for protein design is complex, but deep learning has proven promising to learn the relationship from large protein datasets. This thesis aims to develop deep learning models that generate novel structures and sequences that can be guided towards desired functions. We first describe novel generative models that learn to generate protein structures and sequences by developing diffusion models over general state spaces including Riemannian manifolds and discrete tokens. The resulting methods – FrameDiff, FrameFlow, and MultiFlow – demonstrate the ability of diffusion models to extrapolate beyond the training data to generate novel and diverse protein structures and sequences that pass in silico protein design filters. Next, we apply diffusion models to practical protein design challenges by collaborating with experimental and computational biologists to develop RoseTTAFold Diffusion (RFdiffusion). By combining the structure prediction capabilities of RoseTTAFold and diffusion modeling principles, RFdiffusion can generate functional proteins with in vitro validated properties such as high-affinity binders and symmetric protein assemblies. De novo protein design aims to generate proteins with desired functions by rationally engineering novel protein structures and sequences. The structure requires modeling continuous 3D coordinates of atoms with rigid biochemical constraints of the polymer chain while the sequence is a series of discrete amino acids that should fold into a plausible structure. Understanding the protein function-structure-sequence relationship necessary for protein design is complex, but deep learning has proven promising to learn the relationship from large protein datasets. This thesis aims to develop deep learning models that generate novel structures and sequences that can be guided towards desired functions. We first describe novel generative models that learn to generate protein structures and sequences by developing diffusion models over general state spaces including Riemannian manifolds and discrete tokens. The resulting methods – FrameDiff, FrameFlow, and MultiFlow – demonstrate the ability of diffusion models to extrapolate beyond the training data to generate novel and diverse protein structures and sequences that pass in silico protein design filters. Next, we apply diffusion models to practical protein design challenges by collaborating with experimental and computational biologists to develop RoseTTAFold Diffusion (RFdiffusion). By combining the structure prediction capabilities of RoseTTAFold and diffusion modeling principles, RFdiffusion can generate functional proteins with in vitro validated properties such as high-affinity binders and symmetric protein assemblies.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Learning to Solve Long-Horizon Robot Manipulation&#13;
Problems</title>
<link href="https://hdl.handle.net/1721.1/164142" rel="alternate"/>
<author>
<name>Yang, Zhutian</name>
</author>
<id>https://hdl.handle.net/1721.1/164142</id>
<updated>2025-12-04T03:06:06Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Learning to Solve Long-Horizon Robot Manipulation&#13;
Problems
Yang, Zhutian
If we want mobile robots that perform multi-step tasks in visually diverse and geometrically complex environments, we need them to quickly decide what to do and how to do it. Manipulating multiple objects in environments with movable and articulated obstacles over time requires the robot to satisfy constraints like collision-freeness, reachability, and action feasibility. For problems with large state spaces, continuous action spaces, and long decision horizons, the hybrid constraint satisfaction problems induced by planners become combinatorially difficult to solve. In this thesis, I will discuss strategies for using offline learning to speed up deploymenttime planning, i.e., using a plan feasibility predictor, a subgoal generator, or a compositional joint continuous constraint solver. I will also present strategies for chaining policies learned from demonstrations using conditional inputs, such as key poses and natural language, for generalization in real-world environments. With the resulting efficient long-horizon manipulation planning system, we can solve complex robotic manipulation problems faster at deployment time. It can also be used to generate diverse large-scale whole-body trajectories as part of the data mixture for training robot foundation models in embodied reasoning, planning, and acting.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Building small domain-specific masked language models&#13;
vs. large generative models for clinical decision support&#13;
and their effects on users.</title>
<link href="https://hdl.handle.net/1721.1/164141" rel="alternate"/>
<author>
<name>Sergeeva, Elena</name>
</author>
<id>https://hdl.handle.net/1721.1/164141</id>
<updated>2025-12-04T03:06:17Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Building small domain-specific masked language models&#13;
vs. large generative models for clinical decision support&#13;
and their effects on users.
Sergeeva, Elena
The frequently adopted definition of knowledge defines it as “justified true belief”. As one may notice this definition presents some issues when applied to AI: it is unclear to which degree it is justified to use “humanizing” vocabulary like “belief” or “justification” when describing the performance of an AI system. Traditional explicit knowledge-representation based AI involves reasoning over symbolic representation of statements standing for such “justified true beliefs” [1], the modern connectionist methodology however replaces explicit reasoning with making a prediction based on a set of computations done over weighted continuous representations of the inputs. The continuous representations learned by such systems remain “black box-like”, where the only elements directly understandable by the human user are the model inputs and outputs. In the first part of this thesis I introduce a set of Masked-Language model transformer based models for a diverse set of medical natural language processing tasks including Named Entity Recognition, Negation Extraction and Relation extraction that perform as well or better than bigger prompt-and-generate transformer-based causal language models. In the second part of the thesis, I discuss the modern “prompt-and-generate” approach to natural language processing where both the inputs and the outputs of the model are word-like elements commonly referred to as “tokens”. I explore the nature of token based representation of the input and look at the way token “meaning” is refined at each layer of the successive transformer computation. With respect to the outputs, I explore how people engage with AI generated sequences of tokens that people perceive as “explained” predictions.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Language-Centric Medical Image Understanding</title>
<link href="https://hdl.handle.net/1721.1/164140" rel="alternate"/>
<author>
<name>Wang, Peiqi</name>
</author>
<id>https://hdl.handle.net/1721.1/164140</id>
<updated>2025-12-04T03:05:51Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Language-Centric Medical Image Understanding
Wang, Peiqi
This thesis advances medical image understanding by leveraging the multifaceted roles of language: as supervision, prior knowledge, and a medium for communication. We introduce three main contributions: (1) a weakly supervised framework that uses language in clinical reports to guide fine-grained alignment between image regions and textual descriptions, (2) an adaptive debiasing method that uses language prior to improve the robustness of learning algorithms under noisy supervision, and (3) a novel approach for calibrating linguistic expressions of diagnostic certainty, enabling more reliable communication of clinical findings. Together, these methods lead to more accurate, robust, and reliable machine learning systems, ultimately streamlining clinical workflows and improving patient care.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Exploring spin physics with ultracold atoms</title>
<link href="https://hdl.handle.net/1721.1/164139" rel="alternate"/>
<author>
<name>Lee, Yoo Kyung</name>
</author>
<id>https://hdl.handle.net/1721.1/164139</id>
<updated>2025-12-04T03:06:24Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Exploring spin physics with ultracold atoms
Lee, Yoo Kyung
The dynamics of many interacting spins is an active frontier of research; not only can they explain magnetic phenomena, but they also provide paradigmatic models with deep connections to high-T_c superconductivity, optimization problems, neural networks, and more. Experiments with ultracold alkali atoms in optical lattices have realized spin models with great success. In particular, the isotropic Heisenberg model---the XXX model---was realized more than a decade ago. The ⁷Li apparatus described here was the first to realize a tunable, anisotropic Heisenberg model, also known as the XXZ model.&#13;
&#13;
In this thesis, I will describe how the capabilities of this apparatus were harnessed to characterize the spin models we realize, employ them to observe new resonances, and to contribute to studies in spin squeezing and fundamental physics. First, I will discuss how we prepared and observed phantom helix states: eigenstates of the XXZ Hamiltonian. Our understanding of the contact interactions and the phantom helix states enabled us to observe long-predicted lattice-induced resonances, whose effects can be leveraged as another knob to tune the XXZ Hamiltonian. Furthermore, our control over the spin system allowed us to generate spin-squeezed states,  a paradigmatic form of entanglement for spin ensembles. This is the first time squeezed states were realized with nearest-neighbor contact interactions in a lattice. Finally, our control over the spin degree of freedom and defects in our state preparation allowed us to create pristine periodic lattices with which to study gedankenexperiments in light scattering.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Probing the Diversity of Fast Radio Bursts with CHIME/FRB</title>
<link href="https://hdl.handle.net/1721.1/164138" rel="alternate"/>
<author>
<name>Shin, Kaitlyn</name>
</author>
<id>https://hdl.handle.net/1721.1/164138</id>
<updated>2025-12-04T03:05:31Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Probing the Diversity of Fast Radio Bursts with CHIME/FRB
Shin, Kaitlyn
Fast radio bursts (FRBs) are extremely bright extragalactic radio transients that flash for microseconds to milliseconds at a time, most never to repeat again. Encoded in every observed FRB is information from burst propagation effects, giving us clues about their mysterious origins as well as the environments they traveled through. With inferred all-sky rates of hundreds per day, FRBs have held great interest for those interested in extreme astrophysical processes as well as those interested in cosmological properties of the Universe. The Canadian Hydrogen Intensity Mapping Experiment (CHIME)/FRB project has revolutionized the FRB field with its field-leading discovery rate. With CHIME/FRB, we can start to carry out population-level studies of FRBs to constrain their origins and inform their use as cosmological probes. I present the first population-level studies of CHIME/FRB-observed FRBs using the CHIME/FRB Catalog 1 data release and the injections system to account for observational biases. I discover that CHIME/FRB is likely observationally biased against bursts originating from turbulent local environments, and constrain the energy and distance distributions of FRBs. I also present the Catalog 1 dataset updated with channelized raw voltage (“baseband”) data (“BaseCat1”), for which I played a pivotal role. The CHIME/FRB baseband localization pipeline can localize FRBs to arcminute-precision as long as the signal is bright enough to trigger the saving of offline baseband data. I then discuss two single source-studies enabled by the baseband localization pipeline — one discovering repeaters during phases of unusually heightened burst activity, and one using the burst properties of an unusual FRB to probe the properties of its sightline. In the latter study, I constrain the electron density content of a diffuse filamentary structure on the outskirts of the Virgo Cluster, demonstrating the power of FRBs as probes of diffuse media.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Controlling for the Ionospheric and Baseline-Offset Uncertainties in the CHIME/FRB Outriggers VLBI Network for Milliarcsecond Precision</title>
<link href="https://hdl.handle.net/1721.1/164137" rel="alternate"/>
<author>
<name>Willis, Jacob</name>
</author>
<id>https://hdl.handle.net/1721.1/164137</id>
<updated>2025-12-04T03:09:33Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Controlling for the Ionospheric and Baseline-Offset Uncertainties in the CHIME/FRB Outriggers VLBI Network for Milliarcsecond Precision
Willis, Jacob
Fast radio bursts (FRBs) are a novel form of radio transients discovered in 2007. These bright, extragalactic radio signals have an inferred all-sky rate of hundreds of detections per day. The properties of FRBs hold valuable clues about the extreme physical processes driving them while also holding information about the astrophysical plasmas they traverse on their journey to Earth. The Canadian Hydrogen Intensity Mapping Experiment (CHIME)/FRB project has led the field with the hundreds of FRB detections the collaboration has published to date. However, these detections typically have localization regions so large that we cannot identify a single host galaxy, never mind its local environment. To improve upon this, CHIME/FRB has been transformed into a very long baseline interferometry (VLBI) array, drastically increasing the angular resolution of CHIME/FRB from arcminute to sub-arcsecond precision.&#13;
&#13;
In this work, I present my contributions to commissioning the CHIME/FRB VLBI Outrigger station located at the Green Bank Observatory (GBO) in West Virginia. This includes measuring and validating GBO's exact position to enable the localization of FRBs to sub-arcsecond precision.&#13;
&#13;
For VLBI networks spanning thousands of kilometers, the difference in the local ionospheric environments is significant and leads to errors in the CHIME/FRB Outrigger localizations. I present a thin shell model of the ionosphere to parameterize the local ionospheric environment for each VLBI station. This model may be used to interpolate the error induced by the ionosphere in FRB observations.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Using Z-hadron correlations to probe the medium response in PbPb and pp collisions at √ˢNN = 5.02 TeV</title>
<link href="https://hdl.handle.net/1721.1/164136" rel="alternate"/>
<author>
<name>Chou, Pin-Chun</name>
</author>
<id>https://hdl.handle.net/1721.1/164136</id>
<updated>2025-12-04T03:09:22Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Using Z-hadron correlations to probe the medium response in PbPb and pp collisions at √ˢNN = 5.02 TeV
Chou, Pin-Chun
The first measurement of Z-hadron two-particle correlation function are reported in PbPb collisions at √ˢNN = 5.02 TeV, using the PbPb collision data taken in 2018. The integrated luminosity of the PbPb data is 1.67 ±0.03 nb⁻¹ which made the analysis possible for the first time. Collision data with at at least one Z boson with 40 &lt;pT &lt;200 GeV/c are analyzed. The azimuthal angle distributions with respect to the Z bosons, whih are sensitive to modification of in-medium parton shower and medium recoils, are measured in central PbPb collisions. A significant modification of the two particle correlation in pseudorapidity difference and azimuthal angle difference is observed with respect to the reference measured in pp collisions. Those results are compared to phenomenological models that include medium-recoil, medium response and thermalization of the QGP wakes.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>DePUDS: Decentralized Prosocial Urban Development System</title>
<link href="https://hdl.handle.net/1721.1/164135" rel="alternate"/>
<author>
<name>Zhang, Yan</name>
</author>
<id>https://hdl.handle.net/1721.1/164135</id>
<updated>2025-12-04T03:06:16Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">DePUDS: Decentralized Prosocial Urban Development System
Zhang, Yan
Urban areas face severe socio-economic and environmental challenges like housing crises, inequity, and environmental degradation, often worsened by traditional zoning practices. These are typically rigid, inefficient, outdated, and susceptible to obstruction by narrow special interests (NIMBYism), failing to engage the broader community or adapt to evolving needs. This dissertation proposes the Decentralized Prosocial Urban Development System (DePUDS), a novel governance framework designed to overcome these shortcomings by empowering informed collective consensus and including the often-silent majority.&#13;
DePUDS integrates decentralized technologies like blockchain and smart contracts with structured economic incentives, facilitated through an accessible user-friendly Decentralized Application (DApp) to encourage broad participation. This system fosters transparent, inclusive, and equitable urban development. Its core mechanism, adaptive incentive-based zoning, dynamically aligns developer profitability with community-endorsed priorities—such as affordable housing, public amenities, and sustainability—providing flexibility absent in traditional zoning.&#13;
Employing advanced agent-based simulations enhanced by large language models (LLMs), this research rigorously assesses DePUDS's effectiveness across two distinct case studies: Kendall Square in Cambridge, MA (a dynamic innovation hub) and the Inner Richmond District in San Francisco, CA (a culturally rich but housing-constrained neighborhood). Simulation results demonstrate DePUDS significantly aligns development outcomes with community preferences. In Kendall Square, targeted incentives substantially increased affordable housing and public amenities without hindering private investment. In the Inner Richmond, substantial community-driven incentives successfully unlocked constrained development, markedly reducing displacement risks, boosting affordable housing, enhancing amenity access, lowering carbon emissions via density, and preserving local cultural assets.&#13;
The comparative analysis underscores DePUDS's versatility, showing its potential to enhance growth in active markets and stimulate development in constrained ones. Key policy implications point towards structured DApp-based community participation, adaptive incentive zoning, and dedicated funding. While acknowledging practical implementation hurdles (legal, economic, technological), the findings affirm the feasibility, effectiveness, and transformative potential of decentralized, incentive-driven urban governance. This dissertation offers significant theoretical contributions, practical policy guidelines, and future research pathways to foster more inclusive, sustainable, and resilient urban communities.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Materializing Light: Real-time, Handheld Fabrication of Programmable Structural Color</title>
<link href="https://hdl.handle.net/1721.1/164134" rel="alternate"/>
<author>
<name>Myers, Paris G.</name>
</author>
<id>https://hdl.handle.net/1721.1/164134</id>
<updated>2025-12-04T03:09:31Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Materializing Light: Real-time, Handheld Fabrication of Programmable Structural Color
Myers, Paris G.
Structural color is nature’s programmable color palette. While pigments and dyes absorb light to produce color, structural color uses nanoscale, light-reflecting structures to appear iridescently colored. We present MorphoChrome, an optical device for real-time, handheld, programmable structural color fabrication. Analogous to painting with light, MorphoChrome creates multicolor, structurally colored designs&#13;
by exposing a commercially available holographic photopolymer film to user-controlled wavelengths. Within the device, red, green, and blue laser diodes go through an optical prism, combining light and producing mixed color outputs on the film. Additionally, we introduce a resin-based process to adhere and integrate the structurally-colored film with flexible and rigid objects and diverse making processes. In this thesis, we focus on the device optical design and fabrication, color-mixing,&#13;
color output UI controller, device aperture tips, and holographic photo-polymer film adherence process. We evaluate the available color space and color resolution, and demonstrate creative fabrication applications.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Biophysical specializations supporting efficiency in neural&#13;
networks</title>
<link href="https://hdl.handle.net/1721.1/164133" rel="alternate"/>
<author>
<name>Toloza, Enrique H.S.</name>
</author>
<id>https://hdl.handle.net/1721.1/164133</id>
<updated>2025-12-04T03:06:19Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Biophysical specializations supporting efficiency in neural&#13;
networks
Toloza, Enrique H.S.
Neuroscience and artificial intelligence (AI) research have long enjoyed a synergistic relationship. AI has drawn key inspiration from the organization and function of the brain, while our understanding of the biological processes underlying computation has been profoundly enriched by studying the behavior of artificial systems. As breakthroughs in generative AI continue to transform our world, and as the need for more sustainable artificial neural systems becomes more urgent, the neuro-AI feedback loop has never been more important. AI needs ever more powerful and efficient systems, and neuroscience needs further insight into how our brains work. The development of more brain-like AI promises solutions to both of these problems. Unfortunately, this has thus far been stymied by two critical challenges: 1) how do we identify the features that make a system brain-like and 2) how do we incorporate these features into artificial networks in a useful and interpretable way? To address the first of these challenges, I will use the remarkable structural and biophysical diversity of the brain as an introduction into what it means for a system to be “brain-like.” This will lead us to a discussion of dendrites, the tree-like structures implicated at virtually every length scale of neural computation. Dendrites will thereafter act as the focal point for our study of brain-like computation. Specifically, I will trace how relatively simple biophysical features defined at the subcellular level can transform the computational landscape of large networks of neurons. To address the second of these challenges, it is necessary to discuss several enduring problems in computational neuroscience, broken down as chapters in this thesis. In Chapter 2, I will present the development of a new model of single-neuron dynamics that is realistic enough to capture the rich dynamics of dendritic spiking but efficient enough for use in simulations of thousands of neurons, thereby filling a long unmet need in the field. In Chapter 3, I will describe a solution to the general problem of training neural networks with arbitrary differentiable dynamics, thus opening the door for the study of countless biophysical phenomena in the context of networks that can learn to perform computations. In Chapter 4, I will use these tools to test several longstanding hypotheses regarding the utility of different biophysical features in neurons, performing first-of-their-kind fair comparisons of the computational performance of spiking networks, rate-based networks, and networks with nonlinear and linear dendrites. Finally, in Chapter 5, I will use insights gained from studying dendrites at the network level to provide a new perspective as to how the structural and biophysical diversity of the brain could emerge from a complex interplay of functional pressures (e.g., task demands) and physical constraints (e.g., space and energy). Together, the chapters of this thesis outline a general quantitative framework for building more brain-like AI for use in both AI research and neuroscience. This framework illustrates how biophysical specializations arising at the level of single neurons shape the emergent dynamics of the brain.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Next Week Tonight: Simulating Counterfactual Narratives of the future using Agentic Knowledge Graphs</title>
<link href="https://hdl.handle.net/1721.1/164132" rel="alternate"/>
<author>
<name>Agarwal, Gauri</name>
</author>
<id>https://hdl.handle.net/1721.1/164132</id>
<updated>2025-12-04T03:09:32Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Next Week Tonight: Simulating Counterfactual Narratives of the future using Agentic Knowledge Graphs
Agarwal, Gauri
Understanding the ripple effects of events—both real and speculative—is essential for navigating complex futures. Large Language Models (LLMs) have emerged as powerful tools that offer a user-friendly and narrative experience for question answering and reasoning across large corpuses of unstructured data [15, 96]. While LLMs can respond to complex ‘what-if’ questions, they typically provide single, unverifiable answers. Even with retrievalaugmented generation (RAG) that grounds LLM responses on external sources, the opacity of reasoning pathways undermines trust in model outputs [97]. Next Week Tonight builds on the narrative and reasoning capability of LLMs further by enhancing the exploration of what-if futures and making it more transparent and evidencebased. NWT exposes the underlying knowledge graph, allowing users to inspect inference pathways directly. This also enables the generation of multiple, diverse scenarios from a single condition—each following different but explainable causal chains. In testing 15 counterfactual prompts that span diverse news topics, NWT produced scenario narratives that were rated as significantly more causally coherent, transparent, and easier to audit than standard chat completions. Beyond technical performance, NWT reinvents scenario planning as an interactive narrative experience - encouraging curiosity, critical thinking, and deeper engagement with the complexities of future events. By surfacing not only what could happen but why and how, NWT aims to empower analysts, policymakers, and the public to navigate uncertainty with greater clarity and confidence. Github: https://github.com/viral-medialab/next-week-tonight
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>On the Learnability of General Reinforcement-Learning Objectives</title>
<link href="https://hdl.handle.net/1721.1/164131" rel="alternate"/>
<author>
<name>Yang, Cambridge</name>
</author>
<id>https://hdl.handle.net/1721.1/164131</id>
<updated>2025-12-04T03:05:33Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">On the Learnability of General Reinforcement-Learning Objectives
Yang, Cambridge
Reinforcement learning enables agents to learn decision-making policies in unknown environments to achieve specified objectives. Traditionally, these objectives are expressed through reward functions, enabling well-established guarantees on learning near-optimal policies with a high probability — a property known as probably approximately correct (PAC) -learnability. However, reward functions often serve as imperfect surrogates for true objectives, leading to reward hacking and undermining these guarantees. This thesis formalizes the specification and learnability of general reinforcement-learning objectives beyond rewards, addressing fundamental questions of expressivity and policy learnability. I examine three increasingly expressive classes of objectives: (1) Linear Temporal Logic (LTL) objectives, which extend conventional scalar rewards to temporal specifications of behavior and have garnered recent attention, (2) Computable objectives, encompassing a broad class of structured, algorithmically definable objectives and (3) Non-computable objectives, representing general objectives beyond the computable class. For LTL objectives, I prove that only finitary LTL objectives are PAC-learnable, while infinite-horizon LTL objectives are inherently intractable under the PAC-MDP framework. Extending this result, I establish a general criterion: an objective is PAC-learnable if it is continuous and computable. This criterion facilitates the establishment of PAC-learnability for various existing classes of objectives with unknown PAC-learnability and informs the design of new, learnable objective specifications. Finally, for non-computable objectives, I introduce limit PAC-learnability, a practical relaxation where a sequence of computable, PAC-learnable objectives approximates a non-computable objective. I formalize a universal representation of non-computable objectives using nested limits of computable functions and provide sufficient conditions under which limit PAC-learnability holds. By establishing a theoretical foundation for general RL objectives, this thesis advances our understanding of which objectives are learnable, how they can be specified, and how agents can effectively learn policies to optimize them. These results contribute to the broader goal of designing intelligent agents that align with expressive, formally defined objectives—moving beyond the limitations of reward-based surrogates.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Solid-State Quantum Memories for Near-Term Quantum Repeaters</title>
<link href="https://hdl.handle.net/1721.1/164130" rel="alternate"/>
<author>
<name>Sutula, Madison M.</name>
</author>
<id>https://hdl.handle.net/1721.1/164130</id>
<updated>2025-12-04T03:06:12Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Solid-State Quantum Memories for Near-Term Quantum Repeaters
Sutula, Madison M.
Over the past decade, quantum computers have emerged as a promising technology to enable transformational advances in information processing and communication and solve problems that are intractable to classical computers. While there is great promise in linking quantum computers together over long distances via quantum channels, these technologies are still under development. Solid-state emitters with coherent spin-photon interfaces, long spin lifetimes, and narrow optical transitions are a leading platform for use as quantum memories in networked quantum repeaters. However, while such emitters have already enabled advanced quantum networking demonstrations in laboratory settings, applying these devices as useful memory devices at scale is a key outstanding challenge. In this thesis, we experimentally investigate solid-state quantum memories for quantum information applications. First, we develop experimental techniques to characterize solid-state emitters with high throughput, enabling both better understanding of the distribution of emitter properties and improved feedback on material preparation and device fabrication. Next, we implement quantum frequency conversion to create a coherent spin-photon interface between silicon-vacancy centers in diamond and optical photons in the low-loss telecom band. Finally, we investigate color centers in other engineering materials, including silicon and silicon carbide, to better understand the fundamental trade space of requirements for solid-state hosts. Together, these efforts represent a significant advance in creating, controlling, and deploying telecom-compatible spin interfaces, paving the way for memory-enabled quantum repeaters.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Inferring Clonal Dynamics in Blood using Single-Cell Measurements</title>
<link href="https://hdl.handle.net/1721.1/164129" rel="alternate"/>
<author>
<name>Perry, Andrea N.</name>
</author>
<id>https://hdl.handle.net/1721.1/164129</id>
<updated>2025-12-04T03:09:25Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Inferring Clonal Dynamics in Blood using Single-Cell Measurements
Perry, Andrea N.
In this work, we uniquely tag hematopoietic (blood) stem cells with genetic barcodes and follow their progeny over time to ask whether clonally related cells in myeloproliferative neoplasms (MPNs) favor particular blood cell fates. Myeloproliferative neoplasms are clonal disorders driven most frequently by the JAK2-V617F mutation, which arises in a single hematopoietic stem cell (HSC) and ultimately dominates the normal process of blood cell production. Although all patients carry the same driver mutation, they still branch into three distinct disease forms—essential thrombocythemia (ET), polycythemia vera (PV), or primary myelofibrosis (PMF)—and the reason for this variation remains unknown. One compelling hypothesis is that the JAK2-V617F mutation may arise in HSC subsets with intrinsic biases toward platlet-producing cells (as in ET) or red blood cell precursors (PV). To investigate this question, we analyzed bone-marrow cKit⁺ cells from mice engineered for inducible MPN disease and CRISPR array repair lineage tracing (CARLIN), using single-cell RNA sequencing. Our gene expression analysis shows that the mutation keeps key signaling and stress-response genes switched on and boosts growth-promoting enzymes, collectively pushing blood production toward the myeloid line. At the resolution of individual CARLIN clones (i.e. cells grouped by a shared progenitor), however, we observe no robust mutation-induced lineage bias—an outcome attributable to limited clone recovery and inter-mouse variability. Crucially, this work establishes a scalable analysis pipeline for future, higher-yield CARLIN experiments. Enhancing lineage-tracing sensitivity, barcode diversity, and biological replication will be essential to test whether these interferon-/stress-response and kinase programs manifest as subtle, clone-level fate biases in JAK2-driven MPN.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Principled Approaches for Latency Reduction in Networking Systems</title>
<link href="https://hdl.handle.net/1721.1/164128" rel="alternate"/>
<author>
<name>Pit-Claudel, Benoit</name>
</author>
<id>https://hdl.handle.net/1721.1/164128</id>
<updated>2025-12-04T03:05:20Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Principled Approaches for Latency Reduction in Networking Systems
Pit-Claudel, Benoit
Modern networks face unprecedented challenges due to exponential growth in traffic demands, driven by AI workloads in datacenters and the ubiquitous adoption of cloud services across the internet. This dissertation addresses three critical challenges in network systems: efficient scheduling of inference tasks, performance optimization in hybrid networks, and memory-efficient load balancing in datacenters.&#13;
&#13;
First, we introduce Nona, a stochastic scheduling framework that leverages queueing theory to optimize task placement in datacenter environments. By employing randomized algorithms and considering both network and compute constraints, Nona demonstrates multiple orders of magnitude improvements in job completion times while maintaining implementation simplicity. Nona proposes stochastic scheduling, in which the complexity of the scheduling problem is moved to an offline phase. When handling jobs online, stochastic schedulers are oblivious to the instantaneous state of the network and only rely on predetermined allocation probabilities to make lightning-fast decisions. Second, we present LINC, an in-network coding solution designed for hybrid backbone networks. Through comprehensive mathematical analysis and simulation, we highlight the benefits of network coding in cases where no modifications of the end-hosts are possible. Finally, we develop Sirona, a memory-efficient version of a reactive subflow spraying mechanism suited for hardware deployment. We show that Sirona can achieve competitive performance in homogeneous and heterogeneous datacenter networks while keeping a low memory footprint.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Forward Modeling for Bolometry and Disruption Mitigation in Tokamaks or How to Kill Your Plasma With Confidence, Style, and Pizzazz</title>
<link href="https://hdl.handle.net/1721.1/164127" rel="alternate"/>
<author>
<name>Stein-Lubrano, Benjamin</name>
</author>
<id>https://hdl.handle.net/1721.1/164127</id>
<updated>2025-12-04T03:06:08Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Forward Modeling for Bolometry and Disruption Mitigation in Tokamaks or How to Kill Your Plasma With Confidence, Style, and Pizzazz
Stein-Lubrano, Benjamin
The tokamak is a promising approach to magnetic confinement fusion. Tokamak functionality is threatened by plasma disruption events, which can damage critical machine components. Disruption damage can be mitigated by high-Z impurities, delivered by Massive Gas Injection (MGI) or Shattered Pellet Injection (SPI). Impurities radiate energy out of the plasma and onto the first wall. Evenly distributed radiation causes less damage than unmitigated disruption pathways, which deliver concentrated heat loads. In order to successfully develop and deploy mitigation systems, it is important to accurately measure and characterize disruption radiation. Accurate measurement is challenged by fast disruption timescales and highly asymmetric radiation patterns, which push the time and spatial resolution limits of radiant heat sensors. Previous radiation analysis approaches are typically limited to two dimensions or less by the highly under-determined nature of tomographic reconstruction and limited spatial resolution of sensors. Two dimensional analysis is often inaccurate for disruption radiation, which can be highly three dimensional as a result of localized impurity sources and fast 3D MHD events. In this thesis, I present a new algorithm for 3D radiation analysis in tokamak disruptions, called Emis3D. When Emis3D is applied to mitigated disruptions on the JET tokamak, a significant injection plume radiation effect in mitigated disruptions is revealed. When this effect is included in radiated energy calculations, the mitigated radiation fraction of plasmas with high thermal energy content is significantly improved, indicating that thermal mitigation is more effective than previously thought. Emis3D can also be used as a design tool to evaluate potential radiant heat sensor layouts. When applied to the SPARC tokamak, Emis3D demonstrates that toroidally skewed sensor sightlines improve spatial resolution and reduce blind spots, allowing more accurate measurement.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Understanding the Milky Way with Stars</title>
<link href="https://hdl.handle.net/1721.1/164126" rel="alternate"/>
<author>
<name>Ou, Xiaowei</name>
</author>
<id>https://hdl.handle.net/1721.1/164126</id>
<updated>2025-12-04T03:05:44Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Understanding the Milky Way with Stars
Ou, Xiaowei
"How do galaxies form?" is one of the most important questions in modern astrophysics. Hierarchical growth, the most plausible theory behind galaxy formation, suggests that galaxies, including the Milky Way, assemble through the accretion of smaller systems, over a scaffolding of the invisible Dark Matter. Such growth is evidenced by the differences in stellar structures found in the Galaxy over the last few decades, accelerated most recently by the Gaia space mission. Yet, we still lack a full picture of the formation of the Milky Way and its stellar components, and we are even further in understanding its underlying Dark Matter distribution. For the latter, discrepancies between observations and predictions from CDM model at galactic scales have sparked debate about how well this model accounts for the evolution of the Milky Way. Stellar tracers provide a powerful tool for examining these discrepancies, helping us explore the hierarchical assembly of galaxies in the Local Group and test different models for dark matter. At the same time, cosmological simulations and machine learning techniques offer a bridge between the theory and observations.&#13;
&#13;
In this thesis, I combine observation of stellar kinematics and chemistry with cosmological simulations to understand the formation and evolution of the Milky Way and its satellite dwarf galaxies. I map the dark matter distributions in the Milky Way and one of its ultra-faint dwarf galaxies using stellar dynamics, combining simulations of tidal disruption with observational data to study ongoing merger events and how hierarchical assembly shaped the Milky Way today. I conduct robust machine learning searches of kinematic substructures from disrupted dwarf galaxy debris in the Milky Way and utilize stellar heavy element abundances to probe the galaxies that merged with the Milky Way in the past. Lastly, I develop synthetic surveys from simulations to bridge gaps between theory and observation, testing the robustness of current and future methodologies in understanding how the Milky Way came to be.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Coating Thermal Noise in Gravitational-Wave Detectors</title>
<link href="https://hdl.handle.net/1721.1/164125" rel="alternate"/>
<author>
<name>Demos, Nicholas</name>
</author>
<id>https://hdl.handle.net/1721.1/164125</id>
<updated>2025-12-04T03:05:13Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Coating Thermal Noise in Gravitational-Wave Detectors
Demos, Nicholas
The direct detection of gravitational waves, originating from cataclysmic events such as black hole and neutron star mergers, has ushered in a new era of observational astronomy. These signals offer unique insights into astrophysical phenomena and fundamental physics, but fully realizing their potential requires continued improvements in detector sensitivity. A primary factor limiting the performance of current ground-based interferometers like Advanced LIGO and Advanced Virgo is thermal noise arising from the highly reflective multilayer coatings on the test mass mirrors. Reducing this coating thermal noise, particularly its Brownian component, while simultaneously maintaining exceptionally low optical absorption and scatter is necessary to advance detector capabilities.&#13;
&#13;
This thesis addresses this challenge through the characterization and development of alternative coating materials and designs. Central to this work is a dedicated experimental apparatus employing a high-finesse folded optical cavity and a multimode co-resonance technique. This system enables direct, high-precision measurements of coating thermal noise in the frequency band relevant to gravitational-wave detectors and allows for relatively rapid evaluation of candidate coatings, providing timely feedback for materials development.&#13;
&#13;
Coating materials such as niobia-based oxides, hafnia-tantala mixtures, and substoichiometric silica, were explored employing strategies like compositional optimization, post-deposition annealing, and multimaterial designs with buried layers. Progress toward lower-noise coatings is demonstrated. Highly reflective coatings based on optimized titania-silica, titania-germania, and ternary silicon nitride structures achieved thermal noise levels approximately 75% that of current detector coatings. These coatings also exhibited exceptionally low optical absorption, reaching levels near 1 part-per-million following appropriate heat treatment. While challenges related to defect formation during annealing and discrepancies between different noise measurement methodologies were identified, ongoing research, particularly on defect mitigation in materials like titania-germania, continues to advance the field. The findings presented here contribute to the materials science foundation for improving current gravitational-wave detectors and guiding the design of future observatories.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Time-Domain Astrophysics with the Transiting Exoplanet Survey Satellite</title>
<link href="https://hdl.handle.net/1721.1/164124" rel="alternate"/>
<author>
<name>Jayaraman, Rahul</name>
</author>
<id>https://hdl.handle.net/1721.1/164124</id>
<updated>2025-12-04T03:05:59Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Time-Domain Astrophysics with the Transiting Exoplanet Survey Satellite
Jayaraman, Rahul
The Transiting Exoplanet Survey Satellite (TESS) is conducting an all-sky survey with the primary aim of detecting planets orbiting nearby stars. However, its large field of view and 200 s imaging cadence are useful for other science cases, ranging from stellar astrophysics to transient science. This thesis focuses on using TESS to study both the circumstellar environment and stellar interiors, as well as using the satellite to detect and characterize optical emission from gamma-ray bursts (GRBs). Chapter 2 focuses on the discovery of HD 135348, a "rigidly rotating magnetospheric" star–wherein the stellar magnetic field traps dust in a co-rotating orbit and leads to complex periodic photometric modulations–using solely photometric data. Chapter 3 focuses on the discovery of a long-period subdwarf B (sdB) star using 20 s cadence TESS data and proposes a novel formation mechanism for long-period sdB stars that relies upon stable, nonconservative mass transfer. Chapters 4 and 5 focus on pulsating stars in close binaries, and the evolutionary insights that these "tidally tilted" pulsations enable. In particular, we focus on developing models to track the amplitude and phase of these pulsations as a function of orbital phase, as well as tools to perform physically-motivated modeling of the binary components. Chapters 6-7 focus on the optical signatures of gamma-ray bursts in TESS, and analyze the prompt optical flash that is often observed contemporaneously with the high-energy emission from these bursts. Chapter 7, in particular, aims to connect the prompt optical flash to the high-energy spectral energy distribution (SED), and explains the suppression of the optical flash (compared to the extrapolation of the high-energy SED) by invoking dust extinction in the host galaxy. This thesis represents a significant step forward in both stellar and transient astrophysics; throughout this work, we emphasize the use of an unconventional tool–TESS–to pursue timely scientific questions.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Building Intelligence that can Interact with the Physical World</title>
<link href="https://hdl.handle.net/1721.1/164123" rel="alternate"/>
<author>
<name>Wang, Tsun-Hsuan (Johnson)</name>
</author>
<id>https://hdl.handle.net/1721.1/164123</id>
<updated>2025-12-04T03:05:25Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Building Intelligence that can Interact with the Physical World
Wang, Tsun-Hsuan (Johnson)
Recent advances in Artificial Intelligence (AI) have demonstrated remarkable success in parsing, reasoning, and generating digital content across modalities such as natural language, speech, images, videos, and 3D data. However, these breakthroughs have yet to extend meaningfully beyond the digital realm into the physical world. Developing AI for physical interaction poses challenges such as limited grounding, scarce physical data, and high reliability demands in safety-critical settings. This thesis takes a holistic approach to building intelligence that can interact with the physical world – through the lenses of data, brain, and body. Data is the fuel powering highly capable AI systems. We present methods for data-driven simulation that synthesize sensor measurements from physical processes, and knowledge-driven simulation that leverages large language models to generate actor behaviors and scenarios. By reverse engineering the generative processes behind physical data, we address data scarcity while enabling scalable and effective evaluation. The brain, driven by data, demands a deep understanding of the physical world and reliable interaction with it. We introduce methods to bridge the internet-scale knowledge of digital AI with the physical world to improve generalization and interpretability. For greater reliability, we integrate control-theoretic modules into AI models to enable certifiability. Beyond the behavioral intelligence, the body plays a crucial role in physical interaction. We demonstrate how morphological intelligence can emerge from computation and show how pre-trained generative AI models (brain), when augmented with physics-based simulation that provides feedback on generated data, can be applied to robot design. To this end, this thesis explores how digital AI can be extended into the physical world through a comprehensive investigation of data, brain, and body – laying the groundwork for building physical AI.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Biomolecular Modeling at Scale</title>
<link href="https://hdl.handle.net/1721.1/164122" rel="alternate"/>
<author>
<name>Wohlwend, Jeremy</name>
</author>
<id>https://hdl.handle.net/1721.1/164122</id>
<updated>2025-12-04T03:05:04Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Biomolecular Modeling at Scale
Wohlwend, Jeremy
Predicting the structure and interactions of biomolecules is a fundamental problem in computational biology, with broad implications for disease understanding and drug discovery. Advances in deep learning have enabled remarkable progress, but scaling these approaches to the varied and complex realities of biology is a persistent challenge. This work introduces deep learning methods for biomolecular modeling at scale, designed for efficiency, adaptability, and accessibility. The early chapters present models developed in the general molecular domain, including prediction of structure and interactions for proteins, nucleic acids, and small molecules. To demonstrate how these methods extend to specific biological problems, the latter portion of this work focuses on modeling T cell receptor recognition. As a key immunological mechanism, it highlights the promise of scalable models, but also their present limitations in capturing fine-grained molecular selectivity. Together, these contributions define a framework for bridging foundational models and domain-specific applications, with the potential to scale, and meet the demands of increasingly complex biological systems.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multimessenger signatures of compact binaries</title>
<link href="https://hdl.handle.net/1721.1/164121" rel="alternate"/>
<author>
<name>Mo, Geoffrey Kwan Lok</name>
</author>
<id>https://hdl.handle.net/1721.1/164121</id>
<updated>2025-12-04T03:06:02Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Multimessenger signatures of compact binaries
Mo, Geoffrey Kwan Lok
Gravitational waves and electromagnetic observations provide complementary views into some of the most extreme objects in the Universe. In this thesis, I present studies of multimessenger compact binaries from two angles: electromagnetic follow-up of gravitational-waves, and gravitational-wave follow-up of electromagnetic sources. I first describe technical and computational efforts to enable the distribution of alerts of kHz gravitational-wave sources as a member of the LIGO--Virgo--KAGRA collaboration, and to improve localizations of these events by folding in galaxy catalog information. I then detail work to enable electromagnetic follow-up observations of binary neutron star and neutron star--black hole mergers with two telescopes, the Transiting Exoplanet Survey Satellite (TESS) and the Wide-field Infrared Transient Explorer (WINTER). Approaching multimessenger observations from the opposite direction, I describe a search for gravitational waves coincident with fast radio bursts from the only Galactic fast radio burst source. Lastly, I perform an electromagnetic study of Type Ia supernovae in the mid-infrared, whose white dwarf binary progenitors will be mHz gravitational-wave sources for the future LISA space mission.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Efficient Network Systems Design for Machine Learning</title>
<link href="https://hdl.handle.net/1721.1/164120" rel="alternate"/>
<author>
<name>Yang, Mingran</name>
</author>
<id>https://hdl.handle.net/1721.1/164120</id>
<updated>2025-12-04T03:05:27Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Efficient Network Systems Design for Machine Learning
Yang, Mingran
Machine learning (ML) is transforming modern life by powering a diverse range of groundbreaking applications. As ML models and datasets expand, the scale of training and inference workloads in modern datacenters is increasing at an unprecedented pace. As the demand for computing resources grows, the need for low-latency and energy-efficient network systems becomes increasingly urgent.&#13;
&#13;
This thesis introduces efficient network systems designed to support machine learning workloads. It presents three key systems: Trio-ML, which accelerates ML training; Lightning, which enhances ML inference efficiency; and on-fiber photonic computing, a forward-looking vision for next-generation computing systems.&#13;
&#13;
The first system, Trio-ML, accelerates data-parallel distributed ML training by leveraging in-network computing on Juniper Networks' programmable chipset Trio. Trio-ML features two key designs: in-network aggregation, which utilizes Trio packet processing threads to aggregate gradients directly inside the network, and in-network straggler mitigation, which utilizes Trio timer threads to detect and address stragglers. We prototype Trio-ML on a testbed with three real DNN models (ResNet50, DenseNet161, and VGG11) to demonstrate its effectiveness in mitigating stragglers while performing in-network aggregation. Our evaluations show that when stragglers occur in the cluster, Trio-ML outperforms today's state-of-the-art in-network aggregation solutions by up to 1.8x.&#13;
&#13;
The second system, Lightning, is the first reconfigurable photonic-electronic smartNIC to serve real-time ML inference requests. Lightning uses a fast datapath to feed traffic from the NIC into the photonic domain without creating digital packet processing and data movement bottlenecks. To do so, Lightning leverages a novel reconfigurable count-action abstraction that keeps track of the required computation operations of each inference packet. Our count-action abstraction decouples the compute control plane from the data plane by counting the number of operations in each task and triggers the execution of the next task(s) without interrupting the dataflow. We evaluate Lightning's performance using four platforms: prototype, chip synthesis, emulations, and simulations. Our simulations with large DNN models show that compared to Nvidia A100 GPU, A100X DPU, and Brainwave smartNIC, Lightning accelerates the average inference serve time by 337x, 329x, and 42x, while consuming 352x, 419x, and 54x less energy, respectively.&#13;
&#13;
Building on the in-network computing and photonic computing concepts discussed in Trio-ML and Lightning, we present a forward-looking vision for future computing systems. We argue that pluggable transponders are a prime platform for performing photonic computing inside the network without having to replace networking switches and routers. Optical transponders are ubiquitous in today's wide-area and datacenter networks, giving us a unique opportunity to re-purpose them for photonic computing. To this end, we introduce on-fiber photonic computing, explore key research challenges in bringing this vision to reality, and discuss real-world applications.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wireless, Battery-Free, High-Sensitivity 5G RF Energy Harvesters for Next Generation IoT Sensor Tags</title>
<link href="https://hdl.handle.net/1721.1/164119" rel="alternate"/>
<author>
<name>Yildirim, Deniz Umut</name>
</author>
<id>https://hdl.handle.net/1721.1/164119</id>
<updated>2025-12-04T03:05:17Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Wireless, Battery-Free, High-Sensitivity 5G RF Energy Harvesters for Next Generation IoT Sensor Tags
Yildirim, Deniz Umut
The Internet of Things (IoT) is revolutionizing various industries, enabling a new wave of smart applications such as automated asset tracking in warehouses, substation monitoring in smart grids, and precision agriculture. However, as IoT devices proliferate, powering these devices in a sustainable and maintenance-free manner has become a critical challenge. Traditional IoT systems rely on batteries, which present issues of limited lifespan, environmental impact, and maintenance costs, especially in large-scale deployments. As a result, the development of battery-free IoT devices powered by ambient energy harvesting has gained significant attention. Among various energy-harvesting technologies, radio frequency (RF) energy harvesting has emerged as a promising solution for powering IoT devices. By harvesting energy from ambient RF signals in licensed frequency bands, RF energy-harvesting systems eliminate the need for batteries and allow for continuous, maintenance-free operation. This is especially crucial in environments where battery replacement is impractical or impossible, such as in large industrial warehouses, remote infrastructure, and hazardous environments. However, achieving high sensitivity and reliable operation in RF energy-harvesting systems poses several challenges. High-sensitivity rectifiers are required to capture and convert weak RF signals into usable energy, but integrating these rectifiers with ultra-low power baseband data processing circuits remains a significant hurdle. Moreover, antenna-rectifier matching calibration must be compatible with the duty-cycled operation of these tags, where brief communication periods are followed by long charging intervals. Additionally, the antenna system must be robust to detuning when placed on various objects, ensuring that the system can operate effectively in diverse environments. This thesis presents two integrated circuits to work towards these goals. The first chip is designed with the goal of minimizing the charging time as much as possible, which is critical in scenarios such as inventory management in warehouses, and tamper detection. The goal was to achieve &lt; 1-minute charging time while maintaining sensitivity competitive with the state-of-the-art. Unlike previous harvesters that either focused solely on sensitivity without integrating baseband processing and communication, or included those features but considered continuous communication at low sensitivity, the IC developed in this work achieves a sensitivity of −31 dBm and is capable of backscattering data approximately 18 seconds after a cold start. It also provides a detailed description of the difficulty of achieving higher sensitivities at higher 5G frequencies. The second chip in this thesis builds upon the first one and integrates an analog front-end to convert sensor data for environmental monitoring. We implemented an antenna-rectifier calibration method that is maintained as long as there if RF power, even though the tag goes into long charging periods. Even though the charging time, or the data readout interval, for these tags is more relaxed compared to the inventory management applications, we have also developed a design methodology to minimize the energy required to generate a data packet for backscattering, through which we were able to keep the charging time at 4 minutes while having additional functionalities and backscattering at a higher data rate compared to the first chip. Finally, a simple shielding method was implemented to enable the tags to be placed on any objects without resonance frequency detuning. All of these were achieved while still obtaining a sensitivity of −30 dBm, competitive with the state of the art. In addition, the third project investigates the use of heterogeneously integrated “beyondCMOS” devices to enhance overall rectifier performance. These emerging devices, fabricated by Palacios Group at MIT, show promise in overcoming sensitivity limitations commonly found in rectifiers, thereby extending the range and coverage of energy-harvesting IoT systems. We conduct a detailed characterization of these devices, highlighting their unique physical behaviors not present in standard CMOS technology, and provide system-level design guidelines for building improved rectifiers. Preliminary simulation results show that rectifiers using negative-capacitance field-effect transistors (NCFETs) can harvest up to four times as much power than their CMOS-based counterparts, while maintaining the same sensitivity. This thesis outlines the design, implementation, and evaluation of all three systems. The two aforementioned ICs are tested both in simulation and in real-world scenarios such as a typical office environment. Meanwhile, the novel device technologies are explored through simulation, demonstrating their significant potential for next-generation rectifier design.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analysis of Driver and Pedestrian Gesture Use in the Boston Area. Automated Vehicles May Need More Than Kinematics in Ambiguous Situations</title>
<link href="https://hdl.handle.net/1721.1/164118" rel="alternate"/>
<author>
<name>Weibert, Alexander</name>
</author>
<author>
<name>Manstetten, Dietrich</name>
</author>
<author>
<name>Reimer, Bryan</name>
</author>
<author>
<name>Gershon, Pnina</name>
</author>
<author>
<name>Mehler, Bruce</name>
</author>
<author>
<name>Abdenebaoui, Larbi</name>
</author>
<author>
<name>Hatice Şahin, İppoliti</name>
</author>
<id>https://hdl.handle.net/1721.1/164118</id>
<updated>2025-12-04T03:13:50Z</updated>
<published>2025-10-08T00:00:00Z</published>
<summary type="text">Analysis of Driver and Pedestrian Gesture Use in the Boston Area. Automated Vehicles May Need More Than Kinematics in Ambiguous Situations
Weibert, Alexander; Manstetten, Dietrich; Reimer, Bryan; Gershon, Pnina; Mehler, Bruce; Abdenebaoui, Larbi; Hatice Şahin, İppoliti
Roadways, despite their formal regulations, are dynamic spaces where humans interact beyond formal rules to resolve conflicts. In ambiguous situations, the right of way is often unclear. Self-driving vehicles in urban traffic introduce challenges to their coexistence with humans, indicating a need for greater social awareness in these vehicles. To investigate social interactions among roadway users, we analyzed a naturalistic driving dataset focusing on instances where drivers yielded to pedestrians, by noting gestures. Video analysis showed that gestures were more common in ambiguous situations than in regulated scenarios. Drivers used gestures to navigate the right of way efficiently, while pedestrians used them to express gratitude. These findings highlight the importance of understanding social expressions in designing socially aware self-driving vehicles.
AutomotiveUI Adjunct ’25, Brisbane, QLD, Australia
</summary>
<dc:date>2025-10-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Characterizing and Optimizing Realistic Workloads on a Commercial Compute-in-SRAM Device</title>
<link href="https://hdl.handle.net/1721.1/164117" rel="alternate"/>
<author>
<name>Zhang, Niansong</name>
</author>
<author>
<name>Zhu, Wenbo</name>
</author>
<author>
<name>Golden, Courtney</name>
</author>
<author>
<name>Ilan, Dan</name>
</author>
<author>
<name>Chen, Hongzheng</name>
</author>
<author>
<name>Batten, Christopher</name>
</author>
<author>
<name>Zhang, Zhiru</name>
</author>
<id>https://hdl.handle.net/1721.1/164117</id>
<updated>2025-12-04T03:13:46Z</updated>
<published>2025-10-17T00:00:00Z</published>
<summary type="text">Characterizing and Optimizing Realistic Workloads on a Commercial Compute-in-SRAM Device
Zhang, Niansong; Zhu, Wenbo; Golden, Courtney; Ilan, Dan; Chen, Hongzheng; Batten, Christopher; Zhang, Zhiru
Compute-in-SRAM architectures offer a promising approach to&#13;
achieving higher performance and energy efficiency across a range&#13;
of data-intensive applications. However, prior evaluations have&#13;
largely relied on simulators or small prototypes, limiting the understanding of their real-world potential. In this work, we present&#13;
a comprehensive performance and energy characterization of a&#13;
commercial compute-in-SRAM device, the GSI APU, under realistic&#13;
workloads. We compare the GSI APU against established architectures, including CPUs and GPUs, to quantify its energy efficiency&#13;
and performance potential. We introduce an analytical framework&#13;
for general-purpose compute-in-SRAM devices that reveals fundamental optimization principles by modeling performance trade-offs,&#13;
thereby guiding program optimizations.&#13;
Exploiting the fine-grained parallelism of tightly integrated&#13;
memory-compute architectures requires careful data management.&#13;
We address this by proposing three optimizations: communicationaware reduction mapping, coalesced DMA, and broadcast-friendly&#13;
data layouts. When applied to retrieval-augmented generation&#13;
(RAG) over large corpora (10GB–200GB), these optimizations enable&#13;
our compute-in-SRAM system to accelerate retrieval by 4.8×–6.6×&#13;
over an optimized CPU baseline, improving end-to-end RAG latency by 1.1×–1.8×. The shared off-chip memory bandwidth is&#13;
modeled using a simulated HBM, while all other components are&#13;
measured on the real compute-in-SRAM device. Critically, this system matches the performance of an NVIDIA A6000 GPU for RAG&#13;
while being significantly more energy-efficient (54.4×-117.9× reduction). These findings validate the viability of compute-in-SRAM&#13;
for complex, real-world applications and provide guidance for advancing the technology.
MICRO ’25, Seoul, Republic of Korea
</summary>
<dc:date>2025-10-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Voice to Vision: A Sociotechnical System for Transparent Civic Decision-Making</title>
<link href="https://hdl.handle.net/1721.1/164116" rel="alternate"/>
<author>
<name>Hughes, Margaret</name>
</author>
<author>
<name>Overney, Cassandra</name>
</author>
<author>
<name>Kamra, Ashima</name>
</author>
<author>
<name>Tepale, Jasmin</name>
</author>
<author>
<name>Hamby, Elizabeth</name>
</author>
<author>
<name>Jasim, Mahmood</name>
</author>
<author>
<name>Roy, Deb</name>
</author>
<id>https://hdl.handle.net/1721.1/164116</id>
<updated>2025-12-04T03:13:39Z</updated>
<published>2025-10-17T00:00:00Z</published>
<summary type="text">Voice to Vision: A Sociotechnical System for Transparent Civic Decision-Making
Hughes, Margaret; Overney, Cassandra; Kamra, Ashima; Tepale, Jasmin; Hamby, Elizabeth; Jasim, Mahmood; Roy, Deb
Communities frequently report sending feedback “into a void” during community engagement processes like neighborhood planning, creating a critical disconnect between public input and decision-making. Voice to Vision addresses this gap with a sociotechnical system that comprises three integrated components: a flexible data architecture linking community input to planning outputs, a sensemaking interface for planners to analyze and synthesize feedback, and a community-facing platform that makes the entire engagement process transparent. By creating a shared information space between stakeholders, our system demonstrates how structured data and specialized interfaces can foster cooperation across stakeholder groups, while addressing tensions in accessibility and trust formation. Our CSCW demonstration will showcase this system’s ability to transform opaque civic decision-making processes into collaborative exchanges, inviting feedback on its potential applications beyond urban planning.
CSCW Companion ’25, Bergen, Norway
</summary>
<dc:date>2025-10-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Augmenting Collaborative Problem-Solving: Exploring the Design and Use of GenAI for Groupwork</title>
<link href="https://hdl.handle.net/1721.1/164115" rel="alternate"/>
<author>
<name>Johnson, Janet</name>
</author>
<author>
<name>Rick, Steven</name>
</author>
<author>
<name>Gr?nb?k, Jens Emil</name>
</author>
<author>
<name>Wong, Emily</name>
</author>
<author>
<name>Yin, Ming</name>
</author>
<author>
<name>Nebeling, Michael</name>
</author>
<author>
<name>Klein, Mark</name>
</author>
<author>
<name>Ackerman, Mark</name>
</author>
<author>
<name>Malone, Thomas</name>
</author>
<id>https://hdl.handle.net/1721.1/164115</id>
<updated>2025-12-04T03:13:44Z</updated>
<published>2025-10-17T00:00:00Z</published>
<summary type="text">Augmenting Collaborative Problem-Solving: Exploring the Design and Use of GenAI for Groupwork
Johnson, Janet; Rick, Steven; Gr?nb?k, Jens Emil; Wong, Emily; Yin, Ming; Nebeling, Michael; Klein, Mark; Ackerman, Mark; Malone, Thomas
Complex problem-solving and creative work in the real world are rarely individual endeavors and typically unfold within teams and group settings. While advancements in generative artificial intelligence (GenAI) have shown promise in augmenting creativity and productivity, these tools are primarily designed for individual use and overlook group dynamics and the collaborative aspects of teamwork. This workshop will provide a platform for researchers and practitioners to explore the design of future human-AI groups across four key themes: (1) the role of GenAI in group settings, (2) collaborative and multimodal interactions with GenAI, (3) evaluating GenAI’s influence within groups and designing for appropriate reliance, and (4) evolving group practices in the presence of GenAI. We hope to build a community and construct alignment across participants around how to pursue research that understands how GenAI can augment, undermine, or bring new practices to collaborative settings and groupwork.
CSCW Companion ’25, Bergen, Norway
</summary>
<dc:date>2025-10-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of systematic uncertainty-aware neural network trainings for binned-likelihood analyses at the LHC</title>
<link href="https://hdl.handle.net/1721.1/164114" rel="alternate"/>
<author>
<name>CMS Collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/164114</id>
<updated>2025-12-04T03:14:35Z</updated>
<published>2025-11-26T00:00:00Z</published>
<summary type="text">Development of systematic uncertainty-aware neural network trainings for binned-likelihood analyses at the LHC
CMS Collaboration
We propose a neural network training method capable of accounting for the effects of systematic variations of the data model in the training process and describe its extension towards neural network multiclass classification. The procedure is evaluated on the realistic case of the measurement of Higgs boson production via gluon fusion and vector boson fusion in the τ τ decay channel at the CMS experiment. The neural network output functions are used to infer the signal strengths for inclusive production of Higgs bosons as well as for their production via gluon fusion and vector boson fusion. We observe improvements of 12 and 16% in the uncertainty in the signal strengths for gluon and vector-boson fusion, respectively, compared with a conventional neural network training based on cross-entropy.
</summary>
<dc:date>2025-11-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Designs Related Through Projective and Hopf Maps</title>
<link href="https://hdl.handle.net/1721.1/164113" rel="alternate"/>
<author>
<name>Lindblad, Ayodeji</name>
</author>
<id>https://hdl.handle.net/1721.1/164113</id>
<updated>2025-12-04T03:14:37Z</updated>
<published>2025-11-28T00:00:00Z</published>
<summary type="text">Designs Related Through Projective and Hopf Maps
Lindblad, Ayodeji
We verify a construction which, for K the reals, complex numbers, quaternions, or octonions, builds a spherical t-design by placing a spherical t-design on each K -projective or K -Hopf fiber associated to the points of a ⌊ t / 2 ⌋ -design on a quotient projective space K P n ≠ O P 2 or sphere. This generalizes work of König and Kuperberg, who verified the K = C case of the projective settings, and of Okuda, who (inspired by independent observation of this construction by Cohn, Conway, Elkies, and Kumar) verified the K = C case of the generalized Hopf settings.
</summary>
<dc:date>2025-11-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>A generative deep learning approach to de novo antibiotic design</title>
<link href="https://hdl.handle.net/1721.1/164112" rel="alternate"/>
<author>
<name>Krishnan, Aarti</name>
</author>
<author>
<name>Anahtar, Melis N.</name>
</author>
<author>
<name>Valeri, Jacqueline A.</name>
</author>
<author>
<name>Jin, Wengong</name>
</author>
<author>
<name>Donghia, Nina M.</name>
</author>
<author>
<name>Sieben, Leif</name>
</author>
<author>
<name>Luttens, Andreas</name>
</author>
<author>
<name>Zhang, Yu</name>
</author>
<author>
<name>Modaresi, Seyed Majed</name>
</author>
<author>
<name>Hennes, Andrew</name>
</author>
<author>
<name>Fromer, Jenna</name>
</author>
<author>
<name>Bandyopadhyay, Parijat</name>
</author>
<author>
<name>Chen, Jonathan C.</name>
</author>
<author>
<name>Rehman, Danyal</name>
</author>
<author>
<name>Desai, Ronak</name>
</author>
<author>
<name>Edwards, Paige</name>
</author>
<author>
<name>Lach, Ryan S.</name>
</author>
<author>
<name>Aschtgen, Marie-Stéphanie</name>
</author>
<author>
<name>Gaborieau, Margaux</name>
</author>
<author>
<name>Gaetani, Massimiliano</name>
</author>
<author>
<name>Palace, Samantha G.</name>
</author>
<author>
<name>Omori, Satotaka</name>
</author>
<author>
<name>Khonde, Lutete</name>
</author>
<author>
<name>Moroz, Yurii S.</name>
</author>
<author>
<name>Blough, Bruce</name>
</author>
<author>
<name>Jin, Chunyang</name>
</author>
<author>
<name>Loh, Edmund</name>
</author>
<author>
<name>Grad, Yonatan H.</name>
</author>
<author>
<name>Saei, Amir Ata</name>
</author>
<author>
<name>Coley, Connor W.</name>
</author>
<author>
<name>Wong, Felix</name>
</author>
<author>
<name>Collins, James J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164112</id>
<updated>2025-12-03T06:24:53Z</updated>
<published>2025-10-16T00:00:00Z</published>
<summary type="text">A generative deep learning approach to de novo antibiotic design
Krishnan, Aarti; Anahtar, Melis N.; Valeri, Jacqueline A.; Jin, Wengong; Donghia, Nina M.; Sieben, Leif; Luttens, Andreas; Zhang, Yu; Modaresi, Seyed Majed; Hennes, Andrew; Fromer, Jenna; Bandyopadhyay, Parijat; Chen, Jonathan C.; Rehman, Danyal; Desai, Ronak; Edwards, Paige; Lach, Ryan S.; Aschtgen, Marie-Stéphanie; Gaborieau, Margaux; Gaetani, Massimiliano; Palace, Samantha G.; Omori, Satotaka; Khonde, Lutete; Moroz, Yurii S.; Blough, Bruce; Jin, Chunyang; Loh, Edmund; Grad, Yonatan H.; Saei, Amir Ata; Coley, Connor W.; Wong, Felix; Collins, James J.
The antimicrobial resistance crisis necessitates structurally distinct antibiotics. While deep learning approaches can identify antibacterial compounds from existing libraries, structural novelty remains limited. Here, we developed a generative artificial intelligence framework for designing de novo antibiotics through two approaches: a fragment-based method to comprehensively screen &gt;107 chemical fragments in silico against Neisseria gonorrhoeae or Staphylococcus aureus, subsequently expanding promising fragments, and an unconstrained de novo compound generation, each using genetic algorithms and variational autoencoders. Of 24 synthesized compounds, seven demonstrated selective antibacterial activity. Two lead compounds exhibited bactericidal efficacy against multidrug-resistant isolates with distinct mechanisms of action and reduced bacterial burden in vivo in mouse models of N. gonorrhoeae vaginal infection and methicillin-resistant S. aureus skin infection. We further validated structural analogs for both compound classes as antibacterial. Our approach enables the generative deep-learning-guided design of de novo antibiotics, providing a platform for mapping uncharted regions of chemical space.
</summary>
<dc:date>2025-10-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Frontiers of biological material intelligence</title>
<link href="https://hdl.handle.net/1721.1/164111" rel="alternate"/>
<author>
<name>Marom, Lee</name>
</author>
<author>
<name>Buehler, Markus J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164111</id>
<updated>2025-12-03T06:25:07Z</updated>
<published>2025-11-26T00:00:00Z</published>
<summary type="text">Frontiers of biological material intelligence
Marom, Lee; Buehler, Markus J.
Biological materials exhibit a form of intelligence that enables them to sense, adapt, and self-optimize in response to their environments. Unlike synthetic materials, which are often designed for singular, static functions, natural material systems integrate sensing, memory, and feedback directly into their architectures. As industries face increasing demands for resilience, sustainability, and efficiency, the development of intelligent materials has become a promising step toward the future of material innovation. Advances in artificial intelligence and machine learning, along with mathematical frameworks spanning graph theory and category theory, provide powerful tools to uncover the underlying design principles of intelligent biological materials. Simultaneously, digital fabrication methods, including additive manufacturing and biofabrication, allow the scalable realization of adaptive material systems. As the integration of deep biological insight, computational modeling, and advanced fabrication continues to evolve, it sets the stage for a profound shift in how we conceive, create, and deploy materials. Advancing this convergence will accelerate the development of intelligent systems that are capable of autonomous adaptation, long-term resilience, and embedded functionality across scales and environments.
</summary>
<dc:date>2025-11-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Leveraging community engagement and human-centered design to develop multilevel implementation strategies to enhance adoption of a health equity intervention</title>
<link href="https://hdl.handle.net/1721.1/164110" rel="alternate"/>
<author>
<name>Price, Maggi A.</name>
</author>
<author>
<name>Mulkern, Patrick J.</name>
</author>
<author>
<name>Condon, Madelaine</name>
</author>
<author>
<name>Rakhilin, Marina</name>
</author>
<author>
<name>Johansen, Kara</name>
</author>
<author>
<name>Lyon, Aaron R.</name>
</author>
<author>
<name>Saldana, Lisa</name>
</author>
<author>
<name>Pachankis, John</name>
</author>
<author>
<name>Woodward, Sue A.</name>
</author>
<author>
<name>Roeder, Kathryn M.</name>
</author>
<author>
<name>Moran, Lyndsey R.</name>
</author>
<author>
<name>Jerskey, Beth A.</name>
</author>
<id>https://hdl.handle.net/1721.1/164110</id>
<updated>2025-12-03T06:25:10Z</updated>
<published>2025-11-24T00:00:00Z</published>
<summary type="text">Leveraging community engagement and human-centered design to develop multilevel implementation strategies to enhance adoption of a health equity intervention
Price, Maggi A.; Mulkern, Patrick J.; Condon, Madelaine; Rakhilin, Marina; Johansen, Kara; Lyon, Aaron R.; Saldana, Lisa; Pachankis, John; Woodward, Sue A.; Roeder, Kathryn M.; Moran, Lyndsey R.; Jerskey, Beth A.
Background Health equity intervention implementation (which promotes positive health outcomes for populations experiencing disproportionately worse health) is often impeded by health-equity-specific barriers like provider bias; few studies demonstrate how to overcome these barriers through implementation strategies. An urgent health equity problem in the U.S. is the mental health of transgender youth. To address this, we developed Gender-Affirming Psychotherapy (GAP), a health equity intervention comprising best-practice mental health care for transgender youth. This paper details the identification of implementation determinants and the development of targeted strategies to promote provider adoption of GAP. Methods This study represents part of a larger study of mental health provider adoption of GAP. Here we describe the first 2 stages of the 3-stage community-engaged and human-centered design process – Discover, Design/Build, and Test – to identify implementation determinants of adoption and develop implementation strategies with transgender youth, their parents, and mental health providers. This process involved collecting data via focus groups, design meetings, usability testing, and champion meetings. Data were analyzed using rapid and conventional content analysis. Qualitative coding of implementation determinants was guided by the Health Equity Implementation Framework, and implementation strategy coding was facilitated by the ERIC Implementation Strategy Compilation. Results We identified 15 determinants of GAP adoption, and all were specific to the transgender population (e.g., inclusive record system, anti-transgender attitudes). Seventeen implementation strategies were recommended and 12 were developed, collectively addressing all identified determinants. Most strategies were packaged into an online self-paced mental health provider training (implementation intervention) with 6 training tools. Additional inner-setting strategies were designed to support training uptake (e.g., mandate training) and GAP adoption (e.g., change record system). Conclusions Community-engaged and human-centered design methods can identify health equity intervention implementation determinants and develop targeted strategies. We highlight five generalizable takeaways for health equity implementation scientists: (1) implementer bias may be a key barrier, (2) experience with the health equity population may be an important facilitator, (3) stakeholder stories may be an effective training tool, (4) inner-setting-level implementation strategies may be necessary, and (5) teaching implementers how to build implementation strategies can overcome resource-constraints. Trial registration November 11, 2022; NCT05626231.
</summary>
<dc:date>2025-11-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Breeding of microbiomes conferring salt tolerance to plants</title>
<link href="https://hdl.handle.net/1721.1/164109" rel="alternate"/>
<author>
<name>Guilherme Pereira, Caio</name>
</author>
<author>
<name>Edwards, Joseph A.</name>
</author>
<author>
<name>Khasanova, Albina</name>
</author>
<author>
<name>Carlson, Alexis</name>
</author>
<author>
<name>Brisson, Vanessa</name>
</author>
<author>
<name>Schaefer, Estelle</name>
</author>
<author>
<name>Glavina del Rio, Tijana</name>
</author>
<author>
<name>Tringe, Susannah</name>
</author>
<author>
<name>Vogel, John P.</name>
</author>
<author>
<name>Des Marais, David L.</name>
</author>
<author>
<name>Juenger, Thomas E.</name>
</author>
<author>
<name>Mueller, Ulrich G.</name>
</author>
<id>https://hdl.handle.net/1721.1/164109</id>
<updated>2025-12-03T06:25:08Z</updated>
<published>2025-11-27T00:00:00Z</published>
<summary type="text">Breeding of microbiomes conferring salt tolerance to plants
Guilherme Pereira, Caio; Edwards, Joseph A.; Khasanova, Albina; Carlson, Alexis; Brisson, Vanessa; Schaefer, Estelle; Glavina del Rio, Tijana; Tringe, Susannah; Vogel, John P.; Des Marais, David L.; Juenger, Thomas E.; Mueller, Ulrich G.
Background Microbiome breeding through host-mediated selection is a technique to artificially select for microbiomes conferring beneficial properties to plants. Using a systematic selection protocol that maximises the heritability of microbiome effects, transmission fidelity, and microbiome stability through multiple selection cycles, we previously developed root-associated microbial communities conferring sodium and aluminium tolerance to Brachypodium distachyon, a model for cereal crops. Here, we explore the physiological mechanisms underlying our selected microbiomes’ effect on plant fitness and analyse how our selection protocol shaped the composition and structure of these microbiomes. We analysed the effects of our selected microbiomes on plant fitness and tissue-nutrient concentration, then used 16S rRNA amplicon sequencing to examine microbial community composition and co-occurrence network patterns. Results Our sodium-selected microbiomes reduced leaf sodium concentration by ~ 50%, whereas the aluminium-selected microbiomes had no effect on leaf-tissue nutrient concentration, suggesting different mechanisms underlying the microbiome-mediated stress tolerance. By testing the selected microbiomes in a cross-fostering experiment, we show that our artificially selected microbiomes attained (a) ecological robustness contributing to transplantability (i.e. inheritance) of microbiome-encoded effects between plants; and (b) network features identifying key bacteria promoting salt-stress tolerance. Conclusions Combined, these findings elucidate critical mechanisms underlying host-mediated artificial selection as a framework to breed microbiomes with targeted benefits for plants under salt stresses, with significant implications for sustainable agriculture.
</summary>
<dc:date>2025-11-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurement of ψ(2S) to J/ψ cross-section ratio as function of multiplicity in pPb collisions at √sNN = 8.16 TeV</title>
<link href="https://hdl.handle.net/1721.1/164108" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<author>
<name>Alessio, F.</name>
</author>
<author>
<name>The LHCb collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/164108</id>
<updated>2026-04-14T03:30:10Z</updated>
<published>2025-11-26T00:00:00Z</published>
<summary type="text">Measurement of ψ(2S) to J/ψ cross-section ratio as function of multiplicity in pPb collisions at √sNN = 8.16 TeV
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.; Alessio, F.; The LHCb collaboration
The production ratio of ψ(2S) to J/ψ charmonium states is presented as a function of multiplicity in proton-lead collisions at a centre-of-mass energy of s NN = 8.16 TeV, for both prompt and nonprompt sources. The total luminosity recorded by the LHCb experiment corresponds to 13.6 nb−1 for pPb collisions and 20.8 nb−1 for Pbp collisions, where the first particle corresponds to the particle traveling towards the detector. Measurements are performed in the dimuon final state at forward (backward) centre-of-mass rapidity, with respect to the proton direction, 1.5 &lt; y* &lt; 4.0 (−5.0 &lt; y* &lt; −2.5) for pPb (Pbp) collisions. A multiplicity dependence of the prompt production ratio is observed in pPb collisions, whereas no dependence is found in nonprompt production, nor in either prompt or nonprompt production in Pbp collisions. These results suggest that in the Pb-going direction additional suppression mechanisms beyond comover effects may be present, possibly related to the formation of quark-gluon plasma. This highlights a transition from small to large collision systems and provides important insight into the suppression of charmonia in proton-nucleus collisions.
</summary>
<dc:date>2025-11-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>CURENet: combining unified representations for efficient chronic disease prediction</title>
<link href="https://hdl.handle.net/1721.1/164107" rel="alternate"/>
<author>
<name>Dao, Cong-Tinh</name>
</author>
<author>
<name>Phan, Nguyen M. T.</name>
</author>
<author>
<name>Ding, Jun-En</name>
</author>
<author>
<name>Wu, Chenwei</name>
</author>
<author>
<name>Restrepo, David</name>
</author>
<author>
<name>Luo, Dongsheng</name>
</author>
<author>
<name>Zhao, Fanyi</name>
</author>
<author>
<name>Liao, Chun-Chieh</name>
</author>
<author>
<name>Peng, Wen-Chih</name>
</author>
<author>
<name>Wang, Chi-Te</name>
</author>
<author>
<name>Chen, Pei-Fu</name>
</author>
<author>
<name>Chen, Ling</name>
</author>
<author>
<name>Ju, Xinglong</name>
</author>
<author>
<name>Liu, Feng</name>
</author>
<author>
<name>Hung, Fang-Ming</name>
</author>
<id>https://hdl.handle.net/1721.1/164107</id>
<updated>2026-04-14T03:30:08Z</updated>
<published>2025-11-27T00:00:00Z</published>
<summary type="text">CURENet: combining unified representations for efficient chronic disease prediction
Dao, Cong-Tinh; Phan, Nguyen M. T.; Ding, Jun-En; Wu, Chenwei; Restrepo, David; Luo, Dongsheng; Zhao, Fanyi; Liao, Chun-Chieh; Peng, Wen-Chih; Wang, Chi-Te; Chen, Pei-Fu; Chen, Ling; Ju, Xinglong; Liu, Feng; Hung, Fang-Ming
Electronic health records (EHRs) are designed to synthesize diverse data types, including unstructured clinical notes, structured lab tests, and time-series visit data. Physicians draw on these multimodal and temporal sources of EHR data to form a comprehensive view of a patient’s health, which is crucial for informed therapeutic decision-making. Yet, most predictive models fail to fully capture the interactions, redundancies, and temporal patterns across multiple data modalities, often focusing on a single data type or overlooking these complexities. In this paper, we present CURENet, a multimodal model (Combining Unified Representations for Efficient chronic disease prediction) that integrates unstructured clinical notes, lab tests, and patients’ time-series data by utilizing large language models (LLMs) for clinical text processing and textual lab tests, as well as transformer encoders for longitudinal sequential visits. Curenet has been capable of capturing the intricate interaction between different forms of clinical data and creating a more reliable predictive model for chronic illnesses. We evaluated CURENet using the public MIMIC-III and private FEMH datasets, where it achieved over 94% accuracy in predicting the top 10 chronic conditions in a multi-label framework. Our findings highlight the potential of multimodal EHR integration to enhance clinical decision-making and improve patient outcomes.
</summary>
<dc:date>2025-11-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Effective field theory factorization for diffraction</title>
<link href="https://hdl.handle.net/1721.1/164106" rel="alternate"/>
<author>
<name>Lee, Kyle</name>
</author>
<author>
<name>Schindler, Stella T.</name>
</author>
<author>
<name>Stewart, Iain W.</name>
</author>
<id>https://hdl.handle.net/1721.1/164106</id>
<updated>2026-04-14T03:30:07Z</updated>
<published>2025-11-25T00:00:00Z</published>
<summary type="text">Effective field theory factorization for diffraction
Lee, Kyle; Schindler, Stella T.; Stewart, Iain W.
We derive a factorization formula for coherent and incoherent ep diffraction using the soft collinear effective theory, utilizing multiple power expansion parameters to handle different kinematic regions. This goes beyond the known hard-collinear diffractive factorization to address the small-x Regge dynamics and Pomeron exchange from first principles. The effective field theory analysis also uncovers and factorizes an important irreducible incoherent background generated by color-nonsinglet exchange, dubbed “quasi-diffraction”, for which we calculate the associated Sudakov suppression. For unpolarized scattering we show that there are four diffractive structure functions at leading power, and point out the importance of studying F 3 , 4 D through asymmetries, in addition to F 2 , L D . For the quasi-diffractive background, we make model independent predictions for ratios of the corresponding structure functions in a perturbative kinematic region. Our analysis also makes predictions for six leading-power spin-dependent structure functions. Finally, we provide connections to diffractive parton distributions, and assess the Ingelman-Schlein model. Our work lays a path for further QCD-based studies of diffraction.
</summary>
<dc:date>2025-11-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Coherent photoproduction of ρ0, ω and excited vector mesons in ultraperipheral PbPb collisions</title>
<link href="https://hdl.handle.net/1721.1/164105" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164105</id>
<updated>2026-04-14T03:30:11Z</updated>
<published>2025-11-18T00:00:00Z</published>
<summary type="text">Coherent photoproduction of ρ0, ω and excited vector mesons in ultraperipheral PbPb collisions
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.
The invariant-mass distribution for the coherent photoproduction of dipions in ultraperipheral PbPb collisions is measured using data, corresponding to an integrated luminosity of 224.6 ± 9.6μb−1, collected by the LHCb experiment in 2018 at a nucleon-nucleon centre-of-mass energy s NN = 5.02 TeV. In the mass range from 400 to 1200 MeV, the results are consistent with previous experiments, with the spectrum dominated by the ρ0 meson, which interferes with a nonresonant component, together with a smaller ω meson contribution. In an extended mass range up to 2300 MeV, models previously used do not fit the data and a consistent description requires the introduction of two resonances at masses of 1350 ± 20 MeV and 1790 ± 20 MeV with widths of about 300 MeV. The cross-section for each meson is measured differentially in twelve bins of rapidity from 2.05 to 4.90. The ρ0 cross-section increases with rapidity from about 400 to 600 mb and is measured with a typical precision of 8%, while the cross-section times branching fraction for the ω, ρ′ and ρ′′, with the statistical precision of the data, do not have a pronounced rapidity dependence and are between 0.5 and 1.5mb, with uncertainties up to 30%. A large nuclear suppression is observed for the ρ0 meson compared to expectations based on photoproduction on the proton that use the impulse approximation. Significant suppression is also observed compared to that predicted by elastic scattering described in the Glauber approach, or with the addition of inelastic scattering in a Gribov-Glauber model.
</summary>
<dc:date>2025-11-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Forcing with Invariant Measures</title>
<link href="https://hdl.handle.net/1721.1/164104" rel="alternate"/>
<author>
<name>Ackerman, Nathanael</name>
</author>
<author>
<name>Freer, Cameron</name>
</author>
<author>
<name>Golshani, Mohammad</name>
</author>
<author>
<name>Mirabi, Mostafa</name>
</author>
<author>
<name>Patel, Rehana</name>
</author>
<id>https://hdl.handle.net/1721.1/164104</id>
<updated>2026-04-14T03:30:16Z</updated>
<published>2025-11-24T00:00:00Z</published>
<summary type="text">Forcing with Invariant Measures
Ackerman, Nathanael; Freer, Cameron; Golshani, Mohammad; Mirabi, Mostafa; Patel, Rehana
This paper introduces a model-theoretic generalization of the notion of forcing with random reals, in which forcing gives rise to random generic structures. Specifically, we consider forcing with κ -Borel probability measures on the space of L -structures with a (possibly uncountable) infinite set X, focusing on those that are invariant under the action of the symmetric group Sym ( X ) . We demonstrate how any Sym ( X ) -invariant measure where X is countable can be uniquely extended to a Sym ( Y ) -invariant measure where Y is uncountable, and prove that forcing with such measures satisfies the countable chain condition. We also show that we can uniformly distinguish between these random generic structures and the Cohen generic structures that arise from forcing with a strong Fraïssé class: There is a κ -Borel set of low complexity that contains every Cohen generic structure that is not highly homogeneous but contains no random generic structure, implying that a structure that is not highly homogeneous cannot be both Cohen generic and random generic. Finally, we answer an open question of Kostana in the case of ω 1 , by establishing a connection between forcing with a strong Fraïssé class and Cohen forcing.
</summary>
<dc:date>2025-11-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Gnotobiotic growth and phosphorus limitation of Arabidopsis thaliana and co-occurring microbes on phosphated iron oxides</title>
<link href="https://hdl.handle.net/1721.1/164103" rel="alternate"/>
<author>
<name>Mackie, Amanda M.</name>
</author>
<author>
<name>Schuler, Christopher J.</name>
</author>
<author>
<name>McRose, Darcy L.</name>
</author>
<id>https://hdl.handle.net/1721.1/164103</id>
<updated>2026-04-14T03:30:04Z</updated>
<published>2025-11-27T00:00:00Z</published>
<summary type="text">Gnotobiotic growth and phosphorus limitation of Arabidopsis thaliana and co-occurring microbes on phosphated iron oxides
Mackie, Amanda M.; Schuler, Christopher J.; McRose, Darcy L.
The macronutrient phosphorus is vital for sustaining cellular processes in all life forms. Due to its frequent adsorption on iron minerals, phosphorus bioavailability is low in many soils. While the abiotic adsorption of phosphate on iron minerals has been well studied, the direct effects of this process on bioavailability to plants and microbes has not been thoroughly investigated in a simplified laboratory system. We developed a hydroponic growth system that uses hydrous ferric oxide (HFO) to induce phosphorus limitation and can enable both plant and microbial cultivation as well as gnotobiotic co-culture. We demonstrate that this system can be used for phosphorus-limited growth of the model plant Arabidopsis thaliana as well as two root-associated bacterial isolates (from the genera Rhizobium and Pseudomonas). Elemental analysis of phosphorus and iron concentration in A. thaliana shoots reveals that the addition of increasing amounts of HFO leads to a progressive decrease in phosphorus concentration but does not affect iron quotas. We also report that phosphorus concentrations in both bacterial isolates decrease when cultivated in media supplemented with HFO. We further show that A. thaliana can be co-cultured with a Rhizobium isolate in our phosphorus-limited hydroponic system with bacteria relying on plant photosynthate as their sole carbon source. Our work provides a controlled demonstration of the effects of mineral adsorption on phosphorus bioavailability and a tool for further investigation of how plants and microbes access phosphorus in the environment.
</summary>
<dc:date>2025-11-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Beyond submodular maximization via one-sided smoothness</title>
<link href="https://hdl.handle.net/1721.1/164102" rel="alternate"/>
<author>
<name>Ghadiri, Mehrdad</name>
</author>
<author>
<name>Santiago, Richard</name>
</author>
<author>
<name>Shepherd, Bruce</name>
</author>
<id>https://hdl.handle.net/1721.1/164102</id>
<updated>2026-04-14T03:30:09Z</updated>
<published>2025-11-24T00:00:00Z</published>
<summary type="text">Beyond submodular maximization via one-sided smoothness
Ghadiri, Mehrdad; Santiago, Richard; Shepherd, Bruce
The multilinear framework for submodular maximization was developed to achieve a tight 1 - 1 / e approximation for maximizing a monotone submodular function subject to a matroid constraint, including as special case the submodular welfare problem. The framework has a continuous optimization step (solving the multilinear extension of a submodular function) and a rounding part (rounding a fractional solution to an integral one). We extend both parts to provide a framework for a wider array of applications. The continuous part works for a more general class of continuous functions parameterized by a new smoothness parameter σ . A twice differential function F is called σ -one-sided-smooth ( σ -OSS) if its second derivatives are bounded as follows: 1 2 u T ∇ 2 F ( x ) u ≤ σ · ‖ u ‖ 1 ‖ x ‖ 1 u T ∇ F ( x ) for all u , x ≥ 0 , x ≠ 0 . For σ = 0 this includes previously studied continuous DR-Submodular functions as well as quadratics defined by copositive matrices. We give a modification of the continuous greedy algorithm which finds a solution for maximizing a monotone σ -OSS F over a polytope in the non-negative orthant; the solution approximates the optimum to within factors which are functions of σ which depend on additional properties. Interestingly, σ -OSS functions arise as the multilinear extensions of set functions associated with several well-studied diversity maximization problems: max f ( S ) = ∑ i , j ∈ S A ij : | S | ≤ k . For instance, when A ij defines a σ -semi-metric, its extension is σ -OSS. In these settings, we also develop rounding schemes to approximate the discrete problem.
</summary>
<dc:date>2025-11-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, Dean, School of Engineering</title>
<link href="https://hdl.handle.net/1721.1/164101" rel="alternate"/>
<author>
<name>Gallagher, Mary Beth</name>
</author>
<id>https://hdl.handle.net/1721.1/164101</id>
<updated>2025-12-02T03:09:52Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, Dean, School of Engineering
Gallagher, Mary Beth
This report contains the following sections: Administrative Initiatives, Personnel Information, Educational Activities, Strategic Initiatives, Entrepreneurship, Leadership, and Innovation Activities.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, MIT Washington Office</title>
<link href="https://hdl.handle.net/1721.1/164100" rel="alternate"/>
<author>
<name>Zuber, Maria</name>
</author>
<id>https://hdl.handle.net/1721.1/164100</id>
<updated>2025-12-02T03:09:51Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, MIT Washington Office
Zuber, Maria
This report contains the following sections: Personnel, Communications, Federal advocacy, Priority areas, MIT in DC, and Student engagement and mentorship.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, Department of Brain and Cognitive Sciences</title>
<link href="https://hdl.handle.net/1721.1/164099" rel="alternate"/>
<author>
<name>Fee, Michale</name>
</author>
<id>https://hdl.handle.net/1721.1/164099</id>
<updated>2025-12-02T03:09:47Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, Department of Brain and Cognitive Sciences
Fee, Michale
This report contains the following sections: Introduction: Our Mission and Approach, The Building 46 Community, Strategic Planning, Leadership, Faculty, Research Centers, Academics, Finances and Funding, and Research Highlights.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shotgun Metagenomics of Gastric Biopsies Reveals Compositional and Functional Microbiome Shifts in High- and Low-Gastric-Cancer-Risk Populations from Colombia, South America</title>
<link href="https://hdl.handle.net/1721.1/164098" rel="alternate"/>
<author>
<name>Mannion, Anthony</name>
</author>
<author>
<name>Sheh, Alexander</name>
</author>
<author>
<name>Shen, Zeli</name>
</author>
<author>
<name>Dzink-Fox, JoAnn</name>
</author>
<author>
<name>Piazuelo, M Blanca</name>
</author>
<author>
<name>Wilson, Keith T</name>
</author>
<author>
<name>Peek, Richard</name>
</author>
<author>
<name>Fox, James G</name>
</author>
<id>https://hdl.handle.net/1721.1/164098</id>
<updated>2026-04-14T03:30:05Z</updated>
<published>2023-02-27T00:00:00Z</published>
<summary type="text">Shotgun Metagenomics of Gastric Biopsies Reveals Compositional and Functional Microbiome Shifts in High- and Low-Gastric-Cancer-Risk Populations from Colombia, South America
Mannion, Anthony; Sheh, Alexander; Shen, Zeli; Dzink-Fox, JoAnn; Piazuelo, M Blanca; Wilson, Keith T; Peek, Richard; Fox, James G
Along with Helicobacter pylori infection, the gastric microbiota is hypothesized to modulate stomach cancer risk in susceptible individuals. Whole metagenomic shotgun sequencing (WMS) is a sequencing approach to characterize the microbiome with advantages over traditional culture and 16S rRNA sequencing including identification of bacterial and non-bacterial taxa, species/strain resolution, and functional characterization of the microbiota. In this study, we used WMS to survey the microbiome in extracted DNA from antral gastric biopsy samples from Colombian patients residing in the high-risk gastric cancer town Túquerres (n = 10, H. pylori-positive = 7) and low-risk town of Tumaco (n = 10, H. pylori-positive = 6). Kraken2/Bracken was used for taxonomic classification and abundance. Functional gene profiles were inferred by InterProScan and KEGG analysis of assembled contigs and gene annotation. The most abundant taxa represented bacteria, non-human eukaryota, and viral genera found in skin, oral, food, and plant/soil environments including Staphylococus, Streptococcus, Bacillus, Aspergillus, and Siphoviridae. H. pylori was the predominant taxa present in H. pylori-positive samples. Beta diversity was significantly different based on H. pylori-status, risk group, and sex. WMS detected more bacterial taxa than 16S rRNA sequencing and aerobic, anaerobic, and microaerobic culture performed on the same gastric biopsy samples. WMS identified significant differences in functional profiles found between H. pylori-status, but not risk or sex groups. H. pylori-positive samples were significantly enriched for H. pylori-specific genes including virulence factors such as vacA, cagA, and urease, while carbohydrate and amino acid metabolism genes were enriched in H. pylori-negative samples. This study shows WMS has the potential to characterize the taxonomy and function of the gastric microbiome as risk factors for H. pylori-associated gastric disease. Future studies will be needed to compare and validate WMS versus traditional culture and 16S rRNA sequencing approaches for characterization of the gastric microbiome.
</summary>
<dc:date>2023-02-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Resonance Scattering Treatment with the Windowed Multipole Formalism</title>
<link href="https://hdl.handle.net/1721.1/164097" rel="alternate"/>
<author>
<name>Ridley, Gavin</name>
</author>
<author>
<name>Forget, Benoit</name>
</author>
<author>
<name>Burke, Timothy</name>
</author>
<id>https://hdl.handle.net/1721.1/164097</id>
<updated>2026-04-14T03:30:03Z</updated>
<published>2024-03-03T00:00:00Z</published>
<summary type="text">Resonance Scattering Treatment with the Windowed Multipole Formalism
Ridley, Gavin; Forget, Benoit; Burke, Timothy
A new method for directly sampling the resonance upscattering effect is presented. Alternatives have relied on inefficient rejection sampling techniques or large tabular storage of relative velocities. None of these approaches, which require pointwise energy data, are particularly well suited to the windowed multipole cross-section representation. The new method, called multipole analytic resonance scattering, overcomes these limitations by inverse transform sampling from the target relative velocity distribution where the cross section is expressed in the multipole formalism. The closed-form relative speed distribution contains a novel special function we deem the incomplete Faddeeva function, and we present the first results on its efficient numerical evaluation.
</summary>
<dc:date>2024-03-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Assessing the Structure-Based Turbulence Model Performance for Thermal Striping Applications Using Symmetric Jet Experiments</title>
<link href="https://hdl.handle.net/1721.1/164096" rel="alternate"/>
<author>
<name>Pham, Monica</name>
</author>
<author>
<name>Petrov, Victor</name>
</author>
<author>
<name>Manera, Annalisa</name>
</author>
<author>
<name>Baglietto, Emilio</name>
</author>
<id>https://hdl.handle.net/1721.1/164096</id>
<updated>2026-04-14T03:29:58Z</updated>
<published>2024-07-02T00:00:00Z</published>
<summary type="text">Assessing the Structure-Based Turbulence Model Performance for Thermal Striping Applications Using Symmetric Jet Experiments
Pham, Monica; Petrov, Victor; Manera, Annalisa; Baglietto, Emilio
Turbulent mixing of coolant streams can result in an oscillatory mixing phenomenon called thermal striping. These fluctuations have the potential to lead to anticipated thermal fatigue failures in advanced nuclear reactors. To predict thermal striping, robust and computationally affordable modeling tools that are capable of accurately representing complex turbulence are needed. Hybrid turbulence approaches, such as detached-eddy simulation and scale-adaptive simulation, have shown some success in resolving complex unsteady turbulence for massively separated flows, however the applicability of these models to internal flows is limited. A STRUCTure-based (STRUCT) second-generation Unsteady Reynolds-Averaged Navier–Stokes turbulence model was recently proposed at the Massachusetts Institute of Technology to robustly extend the applicability of hybrid closures. In this work, the STRUCT model is evaluated using experimental data taken at the Reactor Cavity Cooling System separate-effects test facility at the University of Michigan. The experiments observed the interaction of parallel symmetric rectangular jets, and include measurements for mean profiles of velocity and Reynolds stresses. In the present work, the simulation results are assessed against mean profiles of velocity and Reynolds stresses, demonstrating the ability to reproduce the unsteadiness of the jets in close agreement with the measurements at considerably reduced computational cost.
</summary>
<dc:date>2024-07-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Deep-learning models for forecasting financial risk premia and their interpretations</title>
<link href="https://hdl.handle.net/1721.1/164095" rel="alternate"/>
<author>
<name>Lo, Andrew W</name>
</author>
<author>
<name>Singh, Manish</name>
</author>
<id>https://hdl.handle.net/1721.1/164095</id>
<updated>2026-04-14T03:30:06Z</updated>
<published>2023-05-12T00:00:00Z</published>
<summary type="text">Deep-learning models for forecasting financial risk premia and their interpretations
Lo, Andrew W; Singh, Manish
The measurement of financial risk premia, the amount that a risky asset will outperform a risk-free one, is an important problem in asset pricing. The noisiness and non-stationarity of asset returns makes the estimation of risk premia using machine learning (ML) techniques challenging. In this work, we develop ML models that solve the problems associated with risk premia forecasting by separating risk premia prediction into two independent tasks, a time series model and a cross-sectional model, and using neural networks with skip connections to enable their deep neural network training. These models are tested robustly with different metrics, and we observe that our models outperform several existing standard ML models. A known issue with ML models is their ‘black box’ nature, i.e. their opaqueness to interpretability. We interpret these deep neural networks using local approximation-based techniques that provide explanations for our model's predictions.
</summary>
<dc:date>2023-05-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Machine Learning Distinguishes Plant Bioelectric Recordings with and Without Nearby Human Movement</title>
<link href="https://hdl.handle.net/1721.1/164094" rel="alternate"/>
<author>
<name>Gloor, Peter A.</name>
</author>
<author>
<name>Weinbeer, Moritz</name>
</author>
<id>https://hdl.handle.net/1721.1/164094</id>
<updated>2026-04-14T03:29:53Z</updated>
<published>2025-11-15T00:00:00Z</published>
<summary type="text">Machine Learning Distinguishes Plant Bioelectric Recordings with and Without Nearby Human Movement
Gloor, Peter A.; Weinbeer, Moritz
Background: Quantitatively detecting whether plants exhibit measurable bioelectric differences in the presence of nearby human movement remains challenging, in part because plant signals are low-amplitude, slow, and easily confounded by environmental factors. Methods: We recorded bioelectric activity from 2978 plant samples across three species (basil, salad, tomato) using differential electrode pairs (leaf and soil electrodes) sampling at 142 Hz. Two trained performers executed three specific eurythmic gestures near experimental plants while control plants remained isolated. Random Forest and Convolutional Neural Network classifiers were applied to distinguish the control from treatment conditions using engineered features including spectral, temporal, wavelet, and frequency domain characteristics. Results: Random Forest classification achieved 62.7% accuracy (AUC = 0.67) distinguishing differences in recordings collected near a moving human from control conditions, representing a statistically significant 12.7 percentage point improvement over chance. Individual performer signatures were detectable with 68.2% accuracy, while plant species classification achieved only 44.5% accuracy, indicating minimal species-specific artifacts. Temporal analysis revealed that the plants with repeated exposure exhibited consistently less negative bioelectric amplitudes compared to single-exposure plants. Innovation: We introduce a data-driven approach that pairs standardized, short-window bioelectric recordings with machine-learning classifiers (Random Forest, CNN) to test, in an exploratory manner, whether plant signals differ between human-moving-nearby and isolation conditions. Conclusions: Plants exhibit modest but statistically detectable bioelectric differences in the presence of nearby human movement. Rather than attributing these differences to eurythmic movement itself, the present design can only demonstrate that plant recordings collected within ~1 m of a moving human differ, modestly but statistically, from recordings taken ≥3 m away. The underlying biophysical pathways and specific contributing factors (airflow, VOCs, thermal plumes, vibration, electromagnetic fields) remain unknown. These results should therefore be interpreted as exploratory correlations, not mechanistic evidence of gesture-specific plant sensing.
</summary>
<dc:date>2025-11-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analysis of Regional Surface CO2 Fluxes Using the MEGA Satellite Data Assimilation System</title>
<link href="https://hdl.handle.net/1721.1/164093" rel="alternate"/>
<author>
<name>Hu, Liting</name>
</author>
<author>
<name>Hu, Xiaoyi</name>
</author>
<author>
<name>Jiang, Fei</name>
</author>
<author>
<name>He, Wei</name>
</author>
<author>
<name>Deng, Zhu</name>
</author>
<author>
<name>Fang, Shuangxi</name>
</author>
<author>
<name>Fang, Xuekun</name>
</author>
<id>https://hdl.handle.net/1721.1/164093</id>
<updated>2026-04-14T03:30:15Z</updated>
<published>2025-11-13T00:00:00Z</published>
<summary type="text">Analysis of Regional Surface CO2 Fluxes Using the MEGA Satellite Data Assimilation System
Hu, Liting; Hu, Xiaoyi; Jiang, Fei; He, Wei; Deng, Zhu; Fang, Shuangxi; Fang, Xuekun
Understanding the dynamics of terrestrial carbon sources and sinks is crucial for addressing climate change, yet significant uncertainties remain at regional scales. We developed the Monitoring and Evaluation of Greenhouse gAs Flux (MEGA) inversion system with satellite data assimilation and applied it to China using OCO-2 V11.1r XCO2 retrievals. Our results show that China’s terrestrial ecosystems acted as a carbon sink of 0.28 ± 0.15 PgC yr−1 during 2018–2023, consistent with other inversion estimates. Validation against surface CO2 flask measurements demonstrated significant improvement, with RMSE and MAE reduced by 30%–46% and 24–44%, respectively. Six sets of prior sensitivity experiments conclusively demonstrated the robustness of MEGA. In addition, this study is the first to systematically compare model-derived and observation-based background fields in satellite data assimilation. Ten sets of background sensitivity experiments revealed that model-based background fields exhibit superior capability in resolving seasonal flux dynamics, though their performance remains contingent on three key factors: (1) initial fields, (2) flux fields, and (3) flux masks (used to control regional flux switches). These findings highlight the potential for further refinement of the atmospheric inversion system.
</summary>
<dc:date>2025-11-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>ZeoSyn: A Comprehensive Zeolite Synthesis Dataset Enabling Machine-Learning Rationalization of Hydrothermal Parameters</title>
<link href="https://hdl.handle.net/1721.1/164092" rel="alternate"/>
<author>
<name>Pan, Elton</name>
</author>
<author>
<name>Kwon, Soonhyoung</name>
</author>
<author>
<name>Jensen, Zach</name>
</author>
<author>
<name>Xie, Mingrou</name>
</author>
<author>
<name>Gómez-Bombarelli, Rafael</name>
</author>
<author>
<name>Moliner, Manuel</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Olivetti, Elsa</name>
</author>
<id>https://hdl.handle.net/1721.1/164092</id>
<updated>2025-11-27T05:20:45Z</updated>
<published>2024-03-06T00:00:00Z</published>
<summary type="text">ZeoSyn: A Comprehensive Zeolite Synthesis Dataset Enabling Machine-Learning Rationalization of Hydrothermal Parameters
Pan, Elton; Kwon, Soonhyoung; Jensen, Zach; Xie, Mingrou; Gómez-Bombarelli, Rafael; Moliner, Manuel; Román-Leshkov, Yuriy; Olivetti, Elsa
Zeolites, nanoporous aluminosilicates with well-defined porous structures, are versatile materials with applications in catalysis, gas separation, and ion exchange. Hydrothermal synthesis is widely used for zeolite production, offering control over composition, crystallinity, and pore size. However, the intricate interplay of synthesis parameters necessitates a comprehensive understanding of synthesis-structure relationships to optimize the synthesis process. Hitherto, public zeolite synthesis databases only contain a subset of parameters and are small in scale, comprising up to a few thousand synthesis routes. We present ZeoSyn, a dataset of 23,961 zeolite hydrothermal synthesis routes, encompassing 233 zeolite topologies and 921 organic structure-directing agents (OSDAs). Each synthesis route comprises comprehensive synthesis parameters: 1) gel composition, 2) reaction conditions, 3) OSDAs, and 4) zeolite products. Using ZeoSyn, we develop a machine learning classifier to predict the resultant zeolite given a synthesis route with &gt;70% accuracy. We employ SHapley Additive exPlanations (SHAP) to uncover key synthesis parameters for &gt;200 zeolite frameworks. We introduce an aggregation approach to extend SHAP to all building units. We demonstrate applications of this approach to phase-selective and intergrowth synthesis. This comprehensive analysis illuminates the synthesis parameters pivotal in driving zeolite crystallization, offering the potential to guide the synthesis of desired zeolites. The dataset is available at https://github.com/eltonpan/zeosyn_dataset.
</summary>
<dc:date>2024-03-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>One-Pot Synthesis of CHA/ERI-Type Zeolite Intergrowth from a Single Multiselective Organic Structure-Directing Agent</title>
<link href="https://hdl.handle.net/1721.1/164091" rel="alternate"/>
<author>
<name>Kwon, Soonhyoung</name>
</author>
<author>
<name>Bello-Jurado, Estefanía</name>
</author>
<author>
<name>Ikonnikova, Evgeniia</name>
</author>
<author>
<name>Lee, Hwajun</name>
</author>
<author>
<name>Schwalbe-Koda, Daniel</name>
</author>
<author>
<name>Corma, Avelino</name>
</author>
<author>
<name>Willhammar, Tom</name>
</author>
<author>
<name>Olivetti, Elsa A</name>
</author>
<author>
<name>Gomez-Bombarelli, Rafael</name>
</author>
<author>
<name>Moliner, Manuel</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<id>https://hdl.handle.net/1721.1/164091</id>
<updated>2025-11-27T05:20:32Z</updated>
<published>2024-03-13T00:00:00Z</published>
<summary type="text">One-Pot Synthesis of CHA/ERI-Type Zeolite Intergrowth from a Single Multiselective Organic Structure-Directing Agent
Kwon, Soonhyoung; Bello-Jurado, Estefanía; Ikonnikova, Evgeniia; Lee, Hwajun; Schwalbe-Koda, Daniel; Corma, Avelino; Willhammar, Tom; Olivetti, Elsa A; Gomez-Bombarelli, Rafael; Moliner, Manuel; Román-Leshkov, Yuriy
We report the one-pot synthesis of a chabazite (CHA)/erionite (ERI)-type zeolite intergrowth structure characterized by adjustable extents of intergrowth enrichment and Si/Al molar ratios. This method utilizes readily synthesizable 6-azaspiro[5.6]dodecan-6-ium as the exclusive organic structure-directing agent (OSDA) within a potassium-dominant environment. High-throughput simulations were used to accurately determine the templating energy and molecular shape, facilitating the selection of an optimally biselective OSDA from among thousands of prospective candidates. The coexistence of the crystal phases, forming a distinct structure comprising disk-like CHA regions bridged by ERI-rich pillars, was corroborated via rigorous powder X-ray diffraction and integrated differential-phase contrast scanning transmission electron microscopy (iDPC S/TEM) analyses. iDPC S/TEM imaging further revealed the presence of single offretite layers dispersed within the ERI phase. The ratio of crystal phases between CHA and ERI in this type of intergrowth could be varied systematically by changing both the OSDA/Si and K/Si ratios. Two intergrown zeolite samples with different Si/Al molar ratios were tested for the selective catalytic reduction (SCR) of NO&lt;sub&gt;&lt;i&gt;x&lt;/i&gt;&lt;/sub&gt; with NH&lt;sub&gt;3&lt;/sub&gt;, showing competitive catalytic performance and hydrothermal stability compared to that of the industry-standard commercial NH&lt;sub&gt;3&lt;/sub&gt;-SCR catalyst, Cu-SSZ-13, prevalent in automotive applications. Collectively, this work underscores the potential of our approach for the synthesis and optimization of adjustable intergrown zeolite structures, offering competitive alternatives for key industrial processes.
</summary>
<dc:date>2024-03-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Recommendations for improving rigor and reproducibility in site specific characterization</title>
<link href="https://hdl.handle.net/1721.1/164090" rel="alternate"/>
<author>
<name>Wrasman, Cody J</name>
</author>
<author>
<name>Bell, Alexis T</name>
</author>
<author>
<name>Chandler, Bert D</name>
</author>
<author>
<name>Harris, James W</name>
</author>
<author>
<name>Kwon, Stephanie</name>
</author>
<author>
<name>Ball, Madelyn R</name>
</author>
<author>
<name>Krishna, Siddarth H</name>
</author>
<author>
<name>Khatib, Sheima J</name>
</author>
<author>
<name>Bollini, Praveen</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>“Bean” Getsoian, Andrew</name>
</author>
<author>
<name>Weber, Robert S</name>
</author>
<author>
<name>Lercher, Johannes A</name>
</author>
<author>
<name>Liu, Dongxia</name>
</author>
<author>
<name>Resasco, Daniel E</name>
</author>
<author>
<name>Bates, Jason S</name>
</author>
<author>
<name>Hall, Jacklyn N</name>
</author>
<author>
<name>Lebrón-Rodríguez, Edgard A</name>
</author>
<author>
<name>Paz Herrera, Laura</name>
</author>
<author>
<name>Notestein, Justin M</name>
</author>
<author>
<name>Schaidle, Joshua A</name>
</author>
<id>https://hdl.handle.net/1721.1/164090</id>
<updated>2025-11-27T05:20:43Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Recommendations for improving rigor and reproducibility in site specific characterization
Wrasman, Cody J; Bell, Alexis T; Chandler, Bert D; Harris, James W; Kwon, Stephanie; Ball, Madelyn R; Krishna, Siddarth H; Khatib, Sheima J; Bollini, Praveen; Román-Leshkov, Yuriy; “Bean” Getsoian, Andrew; Weber, Robert S; Lercher, Johannes A; Liu, Dongxia; Resasco, Daniel E; Bates, Jason S; Hall, Jacklyn N; Lebrón-Rodríguez, Edgard A; Paz Herrera, Laura; Notestein, Justin M; Schaidle, Joshua A
Heterogeneous catalysis is driven by the interaction of reactant molecules and the catalyst surface. The locus of this interaction as well as the surrounding ensemble of atoms is referred to as the catalyst active site. Active site characterization attempts to distinguish active catalytic sites from inactive surface sites, to elucidate the structural and chemical nature of active sites, and to quantify active site concentration. Numerous techniques have been demonstrated to provide compositional and structural information about the active sites within a catalyst. However, each technique has its own limitations and experimental pitfalls that can lead to data misinterpretation or irreproducible results. This work aims to provide an overview of the types of data that can be collected, to outline common experimental challenges and how to avoid them, and to assemble relevant references for the most used active site characterization techniques. More broadly, we aim to outline best practices for researchers to collect, interpret, and report active site characterization data in a way that provides the most benefit to the broader catalysis community. Increasing the rigor and reproducibility of active site characterization offers a strategy to better link properties with catalytic performance and to enable the community to develop consensus concerning these relationships.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design and Validation of a High-Throughput Reductive Catalytic Fractionation Method</title>
<link href="https://hdl.handle.net/1721.1/164089" rel="alternate"/>
<author>
<name>Kenny, Jacob K</name>
</author>
<author>
<name>Neefe, Sasha R</name>
</author>
<author>
<name>Brandner, David G</name>
</author>
<author>
<name>Stone, Michael L</name>
</author>
<author>
<name>Happs, Renee M</name>
</author>
<author>
<name>Kumaniaev, Ivan</name>
</author>
<author>
<name>Mounfield, William P</name>
</author>
<author>
<name>Harman-Ware, Anne E</name>
</author>
<author>
<name>Devos, Katrien M</name>
</author>
<author>
<name>Pendergast, Thomas H</name>
</author>
<author>
<name>Medlin, J Will</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Beckham, Gregg T</name>
</author>
<id>https://hdl.handle.net/1721.1/164089</id>
<updated>2025-11-27T05:20:36Z</updated>
<published>2024-06-05T00:00:00Z</published>
<summary type="text">Design and Validation of a High-Throughput Reductive Catalytic Fractionation Method
Kenny, Jacob K; Neefe, Sasha R; Brandner, David G; Stone, Michael L; Happs, Renee M; Kumaniaev, Ivan; Mounfield, William P; Harman-Ware, Anne E; Devos, Katrien M; Pendergast, Thomas H; Medlin, J Will; Román-Leshkov, Yuriy; Beckham, Gregg T
Reductive catalytic fractionation (RCF) is a promising method to extract and depolymerize lignin from biomass, and bench-scale studies have enabled considerable progress in the past decade. RCF experiments are typically conducted in pressurized batch reactors with volumes ranging between 50 and 1000 mL, limiting the throughput of these experiments to one to six reactions per day for an individual researcher. Here, we report a high-throughput RCF (HTP-RCF) method in which batch RCF reactions are conducted in 1 mL wells machined directly into Hastelloy reactor plates. The plate reactors can seal high pressures produced by organic solvents by vertically stacking multiple reactor plates, leading to a compact and modular system capable of performing 240 reactions per experiment. Using this setup, we screened solvent mixtures and catalyst loadings for hydrogen-free RCF using 50 mg poplar and 0.5 mL reaction solvent. The system of 1:1 isopropanol/methanol showed optimal monomer yields and selectivity to 4-propyl substituted monomers, and validation reactions using 75 mL batch reactors produced identical monomer yields. To accommodate the low material loadings, we then developed a workup procedure for parallel filtration, washing, and drying of samples and a &lt;sup&gt;1&lt;/sup&gt;H nuclear magnetic resonance spectroscopy method to measure the RCF oil yield without performing liquid-liquid extraction. As a demonstration of this experimental pipeline, 50 unique switchgrass samples were screened in RCF reactions in the HTP-RCF system, revealing a wide range of monomer yields (21-36%), S/G ratios (0.41-0.93), and oil yields (40-75%). These results were successfully validated by repeating RCF reactions in 75 mL batch reactors for a subset of samples. We anticipate that this approach can be used to rapidly screen substrates, catalysts, and reaction conditions in high-pressure batch reactions with higher throughput than standard batch reactors.
</summary>
<dc:date>2024-06-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Electrifying Hydroformylation Catalysts Exposes Voltage-Driven C–C Bond Formation</title>
<link href="https://hdl.handle.net/1721.1/164088" rel="alternate"/>
<author>
<name>Zeng, Joy S</name>
</author>
<author>
<name>Cosner, Emma L</name>
</author>
<author>
<name>Delgado-Kukuczka, Spencer P</name>
</author>
<author>
<name>Jiang, Chenyu</name>
</author>
<author>
<name>Adams, Jason S</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Manthiram, Karthish</name>
</author>
<id>https://hdl.handle.net/1721.1/164088</id>
<updated>2025-11-27T05:20:26Z</updated>
<published>2024-06-19T00:00:00Z</published>
<summary type="text">Electrifying Hydroformylation Catalysts Exposes Voltage-Driven C–C Bond Formation
Zeng, Joy S; Cosner, Emma L; Delgado-Kukuczka, Spencer P; Jiang, Chenyu; Adams, Jason S; Román-Leshkov, Yuriy; Manthiram, Karthish
Electrochemical reactions can access a significant range of driving forces under operationally mild conditions and are thus envisioned to play a key role in decarbonizing chemical manufacturing. However, many reactions with well-established thermochemical precedents remain difficult to achieve electrochemically. For example, hydroformylation (thermo-HFN) is an industrially important reaction that couples olefins and carbon monoxide (CO) to make aldehydes. However, the electrochemical analogue of hydroformylation (electro-HFN), which uses protons and electrons instead of hydrogen gas, represents a complex C-C bond-forming reaction that is difficult to achieve at heterogeneous electrocatalysts. In this work, we import Rh-based thermo-HFN catalysts onto electrode surfaces to unlock electro-HFN reactivity. At mild conditions of room temperature and 5 bar CO, we achieve Faradaic efficiencies of up to 15% and turnover frequencies of up to 0.7 h&lt;sup&gt;-1&lt;/sup&gt;. This electro-HFN rate is an order of magnitude greater than the corresponding thermo-HFN rate at the same catalyst, temperature, and pressure. Reaction kinetics and &lt;i&gt;operando&lt;/i&gt; X-ray absorption spectroscopy provide evidence for an electro-HFN mechanism that involves distinct elementary steps relative to thermo-HFN. This work demonstrates a step-by-step experimental strategy for electrifying a well-studied thermochemical reaction to unveil a new electrocatalyst for a complex and underexplored electrochemical reaction.
</summary>
<dc:date>2024-06-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Enabling Lignin Valorization Through Integrated Advances in Plant Biology and Biorefining</title>
<link href="https://hdl.handle.net/1721.1/164087" rel="alternate"/>
<author>
<name>Dixon, Richard A</name>
</author>
<author>
<name>Puente-Urbina, Allen</name>
</author>
<author>
<name>Beckham, Gregg T</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<id>https://hdl.handle.net/1721.1/164087</id>
<updated>2025-11-27T05:20:40Z</updated>
<published>2024-07-22T00:00:00Z</published>
<summary type="text">Enabling Lignin Valorization Through Integrated Advances in Plant Biology and Biorefining
Dixon, Richard A; Puente-Urbina, Allen; Beckham, Gregg T; Román-Leshkov, Yuriy
Despite lignin having long been viewed as an impediment to the processing of biomass for the production of paper, biofuels, and high-value chemicals, the valorization of lignin to fuels, chemicals, and materials is now clearly recognized as a critical element for the lignocellulosic bioeconomy. However, the intended application for lignin will likely require a preferred lignin composition and form. To that end, effective lignin valorization will require the integration of plant biology, providing optimal feedstocks, with chemical process engineering, providing efficient lignin transformations. Recent advances in our understanding of lignin biosynthesis have shown that lignin structure is extremely diverse and potentially tunable, while simultaneous developments in lignin refining have resulted in the development of several processes that are more agnostic to lignin composition. Here, we review the interface between in planta lignin design and lignin processing and discuss the advances necessary for lignin valorization to become a feature of advanced biorefining.
</summary>
<dc:date>2024-07-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reducing Solvent Consumption in Reductive Catalytic Fractionation through Lignin Oil Recycling</title>
<link href="https://hdl.handle.net/1721.1/164086" rel="alternate"/>
<author>
<name>Jang, Jun Hee</name>
</author>
<author>
<name>Callejón Álvarez, Júlia</name>
</author>
<author>
<name>Neuendorf, Quinn S</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Beckham, Gregg T</name>
</author>
<id>https://hdl.handle.net/1721.1/164086</id>
<updated>2025-11-27T05:20:28Z</updated>
<published>2024-08-14T00:00:00Z</published>
<summary type="text">Reducing Solvent Consumption in Reductive Catalytic Fractionation through Lignin Oil Recycling
Jang, Jun Hee; Callejón Álvarez, Júlia; Neuendorf, Quinn S; Román-Leshkov, Yuriy; Beckham, Gregg T
Reductive catalytic fractionation (RCF) enables the simultaneous valorization of lignin and carbohydrates in lignocellulosic biomass through solvent-based lignin extraction, followed by depolymerization and catalytic stabilization of the extracted lignin. Process modeling has shown that the use of exogenous organic solvent in RCF is a challenge for economic and environmental feasibility, and previous works proposed that lignin oil, a mixture of lignin-derived monomers and oligomers produced by RCF, can be used as a cosolvent in RCF. Here, we further explore the potential of RCF solvent recycling with lignin oil, extending the feasible lignin oil concentration in the solvent to 100 wt %, relative to the previously demonstrated 0-19 wt % range. Solvents containing up to 80 wt % lignin oil exhibited 83-93% delignification, comparable to 83% delignification with a methanol-water mixture, and notably, using lignin oil solely as a solvent achieved 67% delignification in the absence of water. In additional experiments, applying the RCF solvent recycling approach to ten consecutive RCF reactions resulted in a final lignin oil concentration of 11 wt %, without detrimental impacts on lignin extraction, lignin oil molar mass distribution, aromatic monomer selectivity, and cellulose retention. Overall, this work further demonstrates the potential for using lignin oil as an effective cosolvent in RCF, which can reduce the burden on downstream solvent recovery.
</summary>
<dc:date>2024-08-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Career in Catalysis: Mark E. Davis</title>
<link href="https://hdl.handle.net/1721.1/164085" rel="alternate"/>
<author>
<name>Arhancet, Juan P</name>
</author>
<author>
<name>Chen, Cong-Yan</name>
</author>
<author>
<name>Cybulskis, Viktor J</name>
</author>
<author>
<name>Gounder, Rajamani</name>
</author>
<author>
<name>Hong, Suk Bong</name>
</author>
<author>
<name>Jones, Christopher W</name>
</author>
<author>
<name>Kang, Jong Hun</name>
</author>
<author>
<name>Kubota, Yoshihiro</name>
</author>
<author>
<name>Lee, Hyunjoo</name>
</author>
<author>
<name>Orazov, Marat</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Schmidt, Joel E</name>
</author>
<id>https://hdl.handle.net/1721.1/164085</id>
<updated>2025-11-27T05:20:39Z</updated>
<published>2024-08-23T00:00:00Z</published>
<summary type="text">A Career in Catalysis: Mark E. Davis
Arhancet, Juan P; Chen, Cong-Yan; Cybulskis, Viktor J; Gounder, Rajamani; Hong, Suk Bong; Jones, Christopher W; Kang, Jong Hun; Kubota, Yoshihiro; Lee, Hyunjoo; Orazov, Marat; Román-Leshkov, Yuriy; Schmidt, Joel E
Mark E. Davis led an independent research program from 1981 to 2023, beginning at the Virginia Polytechnic Institute and State University (VPI) and then transitioning to the California Institute of Technology (Caltech). His research program was marked by exceptional creativity, breadth, and depth. With classical training in reaction engineering, Davis developed expertise in experimental heterogeneous catalysis and led work in this discipline for more than 40 years. His name is synonymous with zeolites, and today, he is one of the most widely recognized experts in zeolite synthesis, characterization, and catalysis in the world. Early work at the VPI focused on zeolites and catalysis with supported metal coordination complexes. His creativity was evident at the earliest stages of his career, with the development of supported aqueous phase catalysts and the world’s first crystalline, extra-large pore molecular sieve, both reported in the late 1980s. A move to Caltech saw a significant expansion of his zeolite synthesis program and the rapid acceleration of a multidecade collaboration with Dr. Stacey I. Zones of Chevron. At Caltech, his work expanded to include studies of molecular recognition and catalysis with organic/inorganic hybrid materials, and he developed a large, parallel program in drug delivery. His work on catalysis heavily emphasized zeolite catalysis, including major thrusts on the conversion of sugars in the liquid phase and methanol in the gas phase. Numerous new zeolites and molecular sieves were discovered throughout the four decades of the Davis laboratory, highlighted by a successful, multidecade quest to prepare a chiral zeolite with enantioselective catalytic properties. Davis is one of the most decorated researchers of the last four decades. He is one of only 21 living people currently elected to all of the US National Academies (Engineering, Science, Medicine) and elected as a Fellow of the National Academy of Inventors. He was the first engineer to win the NSF’s Alan T. Waterman Award and is one of only two researchers (to date) to win the International Zeolite Association’s Donald Breck Award twice (1989, 2019). Awards from the ACS (Ipatieff, Murphree, and Somorjai Awards), AIChE (Colburn, Professional Progress Awards), and North American Catalysis Society (Emmett Award) are among his accolades.
</summary>
<dc:date>2024-08-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Plant Bioelectrical Signals for Environmental and Emotional State Classification</title>
<link href="https://hdl.handle.net/1721.1/164084" rel="alternate"/>
<author>
<name>Gloor, Peter A.</name>
</author>
<id>https://hdl.handle.net/1721.1/164084</id>
<updated>2025-11-27T05:20:23Z</updated>
<published>2025-11-05T00:00:00Z</published>
<summary type="text">Plant Bioelectrical Signals for Environmental and Emotional State Classification
Gloor, Peter A.
In this study, we present a pilot investigation using a single Purple Heart plant (Tradescantia pallida) to explore whether bioelectrical signals for dual-purpose classification tasks: environmental state detection and human emotion recognition. Using an AD8232 ECG sensor at 400 Hz sampling rate, we recorded 3 s bioelectrical signal segments with 1 s overlap, converting them to mel-spectrograms for ResNet18 CNN (Convolutional Neural Network) classification. For lamp on/off detection, we achieved 85.4% accuracy with balanced precision (0.85–0.86) and recall (0.84–0.86) metrics across 2767 spectrogram samples. For human emotion classification, our system achieved optimal performance at 73% accuracy with 1 s lag, distinguishing between happy and sad emotional states across 1619 samples. These results should be viewed as preliminary and exploratory, demonstrating feasibility rather than definitive evidence of plant-based emotion sensing. Replication across plants, days, and experimental sites will be essential to establish robustness. The current study is limited by a single-plant setup, modest sample size, and reliance on human face-tracking labels, which together preclude strong claims about generalizability.
</summary>
<dc:date>2025-11-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Within-Subtype HIV-1 Polymorphisms and Their Impacts on Intact Proviral DNA Assay (IPDA) for Viral Reservoir Quantification</title>
<link href="https://hdl.handle.net/1721.1/164083" rel="alternate"/>
<author>
<name>Arikatla, Mohith Reddy</name>
</author>
<author>
<name>Mathad, Jyoti S.</name>
</author>
<author>
<name>Reddy, Kavidha</name>
</author>
<author>
<name>Reddy, Nicole</name>
</author>
<author>
<name>Ndung’u, Thumbi</name>
</author>
<author>
<name>Dupnik, Kathryn M.</name>
</author>
<author>
<name>Lee, Guinevere Q.</name>
</author>
<id>https://hdl.handle.net/1721.1/164083</id>
<updated>2025-11-27T05:20:24Z</updated>
<published>2025-10-31T00:00:00Z</published>
<summary type="text">Within-Subtype HIV-1 Polymorphisms and Their Impacts on Intact Proviral DNA Assay (IPDA) for Viral Reservoir Quantification
Arikatla, Mohith Reddy; Mathad, Jyoti S.; Reddy, Kavidha; Reddy, Nicole; Ndung’u, Thumbi; Dupnik, Kathryn M.; Lee, Guinevere Q.
The Intact Proviral DNA Assay (IPDA) is widely used to quantify genome-intact HIV proviruses in people living with HIV, but viral sequence diversity has been observed to cause assay failures due to primer/probe mismatches. Adapted for subtype C, IPDA-BC is a modified version of the IPDA validated on South African HIV-1 subtype C. India is also impacted by subtype C, but IPDA performance within-subtype across geographical regions is not well studied. We analyzed Indian (IN) and South African (ZA) subtype C sequences in silico, hypothesizing that IPDA-BC may underperform with IN viruses. Primer/probe binding was predicted using three increasingly stringent nucleotide mismatch criteria, whose sensitivity and specificity were evaluated against experimental IPDA outcomes. Phylogenetic analyses confirmed that IN and ZA subtype C sequences form distinct clusters with significant compartmentalization (p &lt; 0.003). Across criteria, up to 6–10% decreases in primer/probe binding were observed in IN versus ZA, with the env forward primer being the most affected. These criteria showed low sensitivity (18–53%) and variable specificity (67–100%) in predicting experimental outcomes. In conclusion, even within subtype, HIV-1 variation across geographical regions may impact IPDA performance, underscoring the need for improved predictive models to guide assay design for global HIV cure research.
</summary>
<dc:date>2025-10-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>An Investigation of the Modulating Effects of Sensory Stimulation and Transcranial Magnetic Stimulation on Memory-Related Brain Activity</title>
<link href="https://hdl.handle.net/1721.1/164082" rel="alternate"/>
<author>
<name>Nikolin, Stevan</name>
</author>
<author>
<name>Wang, Matthew</name>
</author>
<author>
<name>Moffa, Adriano</name>
</author>
<author>
<name>Huang, Haijing</name>
</author>
<author>
<name>Xu, Mei</name>
</author>
<author>
<name>Pande, Siddhartha Raj</name>
</author>
<author>
<name>Martin, Donel</name>
</author>
<id>https://hdl.handle.net/1721.1/164082</id>
<updated>2025-11-27T05:20:21Z</updated>
<published>2025-10-31T00:00:00Z</published>
<summary type="text">An Investigation of the Modulating Effects of Sensory Stimulation and Transcranial Magnetic Stimulation on Memory-Related Brain Activity
Nikolin, Stevan; Wang, Matthew; Moffa, Adriano; Huang, Haijing; Xu, Mei; Pande, Siddhartha Raj; Martin, Donel
Background/Objectives: As the global population ages, the prevalence of disorders associated with memory dysfunction (e.g., Alzheimer’s disease) continues to increase. There is a need for novel interventions that can enhance memory and support affected individuals. Non-invasive brain stimulation provides a promising approach to engage circuits within the hippocampal network, a group of brain regions critical for episodic memory, and thereby improve cognition. Methods: Twenty healthy participants completed a single-blind, within-subject crossover study over four sessions. In each session, they received one of four interventions whilst viewing pictures of real-world objects: 40 Hz synchronised audiovisual stimulation (AVS), theta burst stimulation (TBS), a combination of synchronised 5 Hz repetitive transcranial magnetic stimulation with AVS (rTMS + AVS), or sham rTMS. Electroencephalography (EEG) was recorded to measure associated brain activity changes. Following each intervention, participants completed a recognition memory task. Results: Mixed-effect repeated measure models (MRMMs) revealed no significant differences in recognition memory performance or theta (5 Hz) activity across conditions. However, both TBS and rTMS + AVS significantly increased gamma (40 Hz) activity compared to sham rTMS, and TBS induced a widespread increase in theta-gamma phase-amplitude coupling during picture viewing. Conclusions: While the neuromodulatory interventions did not enhance memory performance, the observed increase in gamma activity, particularly following rTMS-based stimulation, suggests potential engagement of neural processes associated with memory. These findings warrant further investigation into the role of gamma oscillations in memory and cognitive enhancement.
</summary>
<dc:date>2025-10-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shaping In-Vehicle Behaviours through Activity-Centered Design</title>
<link href="https://hdl.handle.net/1721.1/164081" rel="alternate"/>
<author>
<name>Patel, Ankit</name>
</author>
<author>
<name>Gershon, Pnina</name>
</author>
<author>
<name>Habibovic, Azra</name>
</author>
<author>
<name>Novakazi, Fjoll?</name>
</author>
<author>
<name>Akahoshi, Sakura</name>
</author>
<author>
<name>Alsaid, Areen</name>
</author>
<author>
<name>Cha, Kyungjoo</name>
</author>
<id>https://hdl.handle.net/1721.1/164081</id>
<updated>2025-11-27T05:20:06Z</updated>
<published>2025-10-08T00:00:00Z</published>
<summary type="text">Shaping In-Vehicle Behaviours through Activity-Centered Design
Patel, Ankit; Gershon, Pnina; Habibovic, Azra; Novakazi, Fjoll?; Akahoshi, Sakura; Alsaid, Areen; Cha, Kyungjoo
In today’s fast-paced society, most individuals commute either by personal vehicle or public transportation. User preferences and requirements are crucial, with design playing a significant role. The nature of design should be such that it is both inclusive and assimilative, and its purpose is to propel innovation and progress while also improving the quality of life of the user. That is why a general focus was given to the user-centered design approach while developing vehicles, especially, cabin (cockpit) design. With prioritizing the user activities, it is interesting to explore how users’ experience and behavior vary through the application of different design approaches. Nevertheless, existing literature has significantly overlooked the impact of design approaches on “human activity". Therefore, the main objective of the workshop is to examine the relationships between activity-centered design and user behavior.
AutomotiveUI Adjunct ’25, Brisbane, QLD, Australia
</summary>
<dc:date>2025-10-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Scale, Engage, or Both?: Potential and Perils of Applying Large Language Models in Interview and Conversation-Based Research</title>
<link href="https://hdl.handle.net/1721.1/164080" rel="alternate"/>
<author>
<name>Hwang, Angel Hsing-Chi</name>
</author>
<author>
<name>Aubin Le Qu?r?, Marianne</name>
</author>
<author>
<name>Schroeder, Hope</name>
</author>
<author>
<name>Cuevas, Alejandro</name>
</author>
<author>
<name>Dow, Steven</name>
</author>
<author>
<name>Kapania, Shivani</name>
</author>
<author>
<name>Rho, Eugenia</name>
</author>
<id>https://hdl.handle.net/1721.1/164080</id>
<updated>2025-11-27T05:20:01Z</updated>
<published>2025-10-17T00:00:00Z</published>
<summary type="text">Scale, Engage, or Both?: Potential and Perils of Applying Large Language Models in Interview and Conversation-Based Research
Hwang, Angel Hsing-Chi; Aubin Le Qu?r?, Marianne; Schroeder, Hope; Cuevas, Alejandro; Dow, Steven; Kapania, Shivani; Rho, Eugenia
An increasing number of studies apply tools powered by large language models (LLMs) to interview and conversation-based research, one of the most commonly used research methods in CSCW. This panel invites the CSCW community to critically debate the role of LLMs in reshaping interview-based methods. We aim to explore how these tools might (1) address persistent challenges in conversation-based research, such as limited scalability and participant engagement, (2) introduce novel methodological possibilities, and (3) surface additional practical, technical, and ethical concerns. The panel discussion will be grounded on the panelists’ prior experience applying LLMs to their own interview and conversation-based research. We ask whether LLMs offer unique advantages to enhance interview research, beyond automating certain aspects of the research process. Through this discussion, we encourage researchers to reflect on how applying LLM tools may require rethinking research design, conversational protocols, and ethical practices.
CSCW Companion ’25, Bergen, Norway
</summary>
<dc:date>2025-10-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Yeast Display Reveals Plentiful Mutations That Improve Fusion Peptide Vaccine-Elicited Antibodies Beyond 59% HIV-1 Neutralization Breadth</title>
<link href="https://hdl.handle.net/1721.1/164079" rel="alternate"/>
<author>
<name>França, Camila T</name>
</author>
<author>
<name>Pletnev, Sergei</name>
</author>
<author>
<name>Madan, Bharat</name>
</author>
<author>
<name>Katsamba, Phinikoula S</name>
</author>
<author>
<name>McKee, Krisha</name>
</author>
<author>
<name>Morano, Nicholas C</name>
</author>
<author>
<name>Zhang, Baoshan</name>
</author>
<author>
<name>Bahna, Fabiana</name>
</author>
<author>
<name>Bylund, Tatsiana</name>
</author>
<author>
<name>Lin, Bob C</name>
</author>
<author>
<name>Louder, Mark K</name>
</author>
<author>
<name>Mannepalli, Seetha</name>
</author>
<author>
<name>Nimrania, Rajani</name>
</author>
<author>
<name>O’Dell, Sijy</name>
</author>
<author>
<name>Doria-Rose, Nicole A</name>
</author>
<author>
<name>Kwong, Peter D</name>
</author>
<author>
<name>Shapiro, Lawrence</name>
</author>
<author>
<name>Sheng, Zizhang</name>
</author>
<author>
<name>Zhou, Tongqing</name>
</author>
<author>
<name>DeKosky, Brandon J</name>
</author>
<id>https://hdl.handle.net/1721.1/164079</id>
<updated>2025-11-27T05:20:42Z</updated>
<published>2025-10-27T00:00:00Z</published>
<summary type="text">Yeast Display Reveals Plentiful Mutations That Improve Fusion Peptide Vaccine-Elicited Antibodies Beyond 59% HIV-1 Neutralization Breadth
França, Camila T; Pletnev, Sergei; Madan, Bharat; Katsamba, Phinikoula S; McKee, Krisha; Morano, Nicholas C; Zhang, Baoshan; Bahna, Fabiana; Bylund, Tatsiana; Lin, Bob C; Louder, Mark K; Mannepalli, Seetha; Nimrania, Rajani; O’Dell, Sijy; Doria-Rose, Nicole A; Kwong, Peter D; Shapiro, Lawrence; Sheng, Zizhang; Zhou, Tongqing; DeKosky, Brandon J
Background/Objectives: Vaccine elicitation of antibodies with high HIV-1 neutralization breadth is a long-standing goal. Recently, the induction of such antibodies has been achieved at the fusion peptide site of vulnerability. Questions remain, however, as to how much anti-fusion peptide antibodies can be improved and whether their neutralization breadth and potency are sufficient to prevent HIV-1 infection. Methods: Here, we use yeast display coupled with deep mutational screening and biochemical and structural analyses to study the improvement of the best fusion peptide-directed, vaccine-elicited antibody, DFPH_a.01, with an initial 59% breadth. Results: Yeast display identified both single and double mutations that improved recognition of HIV-1 envelope trimers. We characterized two paratope-distal light chain (LC) mutations, S10R and S59P, which together increased breadth to 63%. Biochemical analysis demonstrated DFPH-a.01_10R59P-LC, and its component mutations, to have increased affinity and stability. Cryo-EM structural analysis revealed elbow-angle influencing by S10R-LC and isosteric positioning by S59P-LC as explanations for enhanced breadth, affinity, and stability. Conclusions: These results, along with another antibody with enhanced performance (DFPH-a.01_1G10A56K-LC with 64% breadth), suggest that mutations improving DFPH_a.01 are plentiful, an important vaccine insight.
</summary>
<dc:date>2025-10-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Probabilistic Perspective on Tiling Sparse Tensor Algebra</title>
<link href="https://hdl.handle.net/1721.1/164078" rel="alternate"/>
<author>
<name>Sharma, Ritvik</name>
</author>
<author>
<name>Xue, Zi Yu</name>
</author>
<author>
<name>Zhang, Nathan</name>
</author>
<author>
<name>Lacouture, Rubens</name>
</author>
<author>
<name>Kjolstad, Fredrik</name>
</author>
<author>
<name>Achour, Sara</name>
</author>
<author>
<name>Horowitz, Mark</name>
</author>
<id>https://hdl.handle.net/1721.1/164078</id>
<updated>2025-11-27T05:20:09Z</updated>
<published>2025-10-17T00:00:00Z</published>
<summary type="text">A Probabilistic Perspective on Tiling Sparse Tensor Algebra
Sharma, Ritvik; Xue, Zi Yu; Zhang, Nathan; Lacouture, Rubens; Kjolstad, Fredrik; Achour, Sara; Horowitz, Mark
Sparse tensor algebra computations are often memory-bound due to irregular access patterns and low arithmetic intensity. We present D2T2 (Data-Driven Tensor Tiling), a framework that optimizes static coordinate-space tiling schemes to minimize memory traffic by identifying and leveraging relevant high-level statistics from input operands. For a given tensor algebra computation, D2T2 collects statistics from input tensors, builds a probability distribution-based model of the tensor computation, and uses it to predict traffic for various tiling configurations. It searches over tile shape and size configurations to minimize total traffic. We evaluate D2T2 against Tailors and DRT, two state of the art tiling schemes for sparse tensor algebra. We find that D2T2 achieves, on average, a 2.54 × speedup over Tailors and a 1.13× lower memory bandwidth compared to DRT for sparse-sparse matrix multiplication (SpMSpM). We also achieve 1.22–48.94× lower bandwidth for SpMSpM and up to 34.31× lower bandwidth for tensor operations (TTM and MTTKRP) than conservative static tiling schemes. Unlike prior tiling techniques, D2T2 is deployable without specialized hardware support. On Opal, a 16nm sparse tensor algebra accelerator, D2T2 generated tiling configurations that achieve 1.23–3.34 × speedups compared to their original hand-tuned configurations.
MICRO ’25, Seoul, Republic of Korea
</summary>
<dc:date>2025-10-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>HapticHearing: A Haptic Feedback System for Complementing Auditory Speech Perception for Mild-to-Moderate Hearing Loss</title>
<link href="https://hdl.handle.net/1721.1/164077" rel="alternate"/>
<author>
<name>Chin, Sam</name>
</author>
<author>
<name>Fitz-Gibbon, Emmie</name>
</author>
<author>
<name>Huang, Bingjian</name>
</author>
<author>
<name>Paradiso, Joseph</name>
</author>
<id>https://hdl.handle.net/1721.1/164077</id>
<updated>2025-11-27T05:20:00Z</updated>
<published>2025-10-22T00:00:00Z</published>
<summary type="text">HapticHearing: A Haptic Feedback System for Complementing Auditory Speech Perception for Mild-to-Moderate Hearing Loss
Chin, Sam; Fitz-Gibbon, Emmie; Huang, Bingjian; Paradiso, Joseph
Age-related hearing loss is often caused by cochlear hair cell degradation. This creates a challenge for hearing aids, which rely on sound amplification. Once hearing ability in a specific frequency is lost, amplification alone provides little benefit. Previous haptic systems have tried to solve this with complete sensory substitution, converting audio signals like phonemes to tactile patterns. However, these systems require significant amount of time to learn, and induce high cognitive load in haptic perception. Our system, HapticHearing, takes an alternative approach of leveraging a user’s residual hearing and complementing it with tactile feedback. We present a custom multi-actuator haptic device, designed to translate phonemic information from speech into tactile patterns that are customized to a user’s hearing loss and speech perception abilities. The system consists of a microphone for speech capture, four-band energy envelope extraction with vowel embedding, a custom USB-to-haptic driver PCB, and wearable devices containing eight vibrotactile actuators that deliver personalized tactile feedback based on the user’s audiogram. Psychophysical validation (n=9) showed neck-worn devices achieved better spatial localization (67% vs 53%) while while bracelet and necklace devices had lower detection thresholds than over-ear (thresholds  0.09 vs 0.18).
ASSETS ’25, Denver, CO, USA
</summary>
<dc:date>2025-10-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Resonance: Drawing from Memories to Imagine Positive Futures through AI-Augmented Journaling</title>
<link href="https://hdl.handle.net/1721.1/164076" rel="alternate"/>
<author>
<name>Zulfikar, Wazeer</name>
</author>
<author>
<name>Chiaravalloti, Treyden</name>
</author>
<author>
<name>Shen, Jocelyn</name>
</author>
<author>
<name>Picard, Rosalind</name>
</author>
<author>
<name>Maes, Pattie</name>
</author>
<id>https://hdl.handle.net/1721.1/164076</id>
<updated>2025-11-27T05:20:13Z</updated>
<published>2025-10-09T00:00:00Z</published>
<summary type="text">Resonance: Drawing from Memories to Imagine Positive Futures through AI-Augmented Journaling
Zulfikar, Wazeer; Chiaravalloti, Treyden; Shen, Jocelyn; Picard, Rosalind; Maes, Pattie
People inherently use experiences of their past while imagining their future, a capability that plays a crucial role in mental health. Resonance is an AI-powered journaling tool designed to augment this ability by offering AI-generated, action-oriented suggestions for future activities based on the user’s own past memories. Suggestions are offered when a new memory is logged and are followed by a prompt for the user to imagine carrying out the suggestion. In a two-week randomized controlled study (N=55), we found that using Resonance significantly improved mental health outcomes, reducing the users’ PHQ8 scores, a measure of current depression, and increasing their daily positive affect, particularly when they would likely act on the suggestion. Notably, the effectiveness of the suggestions was higher when they were personal, novel, and referenced the user’s logged memories. Finally, through open-ended feedback, we discuss the factors that encouraged or hindered the use of the tool.
AHs 2025, Masdar City, Abu Dhabi, United Arab Emirates
</summary>
<dc:date>2025-10-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>A11yShape: AI-Assisted 3-D Modeling for Blind and Low-Vision Programmers</title>
<link href="https://hdl.handle.net/1721.1/164075" rel="alternate"/>
<author>
<name>Zhang, Zhuohao (Jerry)</name>
</author>
<author>
<name>Li, Haichang</name>
</author>
<author>
<name>Yu, Chun Meng</name>
</author>
<author>
<name>Faruqi, Faraz</name>
</author>
<author>
<name>Xie, Junan</name>
</author>
<author>
<name>Kim, Gene</name>
</author>
<author>
<name>Fan, Mingming</name>
</author>
<author>
<name>Forbes, Angus</name>
</author>
<author>
<name>Wobbrock, Jacob</name>
</author>
<author>
<name>Guo, Anhong</name>
</author>
<author>
<name>He, Liang</name>
</author>
<id>https://hdl.handle.net/1721.1/164075</id>
<updated>2025-11-27T05:20:04Z</updated>
<published>2025-10-22T00:00:00Z</published>
<summary type="text">A11yShape: AI-Assisted 3-D Modeling for Blind and Low-Vision Programmers
Zhang, Zhuohao (Jerry); Li, Haichang; Yu, Chun Meng; Faruqi, Faraz; Xie, Junan; Kim, Gene; Fan, Mingming; Forbes, Angus; Wobbrock, Jacob; Guo, Anhong; He, Liang
Building 3-D models is challenging for blind and low-vision (BLV) users due to the inherent complexity of 3-D models and the lack of support for non-visual interaction in existing tools. To address this issue, we introduce A11yShape, a novel system designed to help BLV users who possess basic programming skills understand, modify, and iterate on 3-D models. A11yShape leverages LLMs and integrates with OpenSCAD, a popular open-source editor that generates 3-D models from code. Key functionalities of A11yShape include accessible descriptions of 3-D models, version control to track changes in models and code, and a hierarchical representation of model components. Most importantly, A11yShape employs a cross-representation highlighting mechanism to synchronize semantic selections across all model representations—code, semantic hierarchy, AI description, and 3-D rendering. We conducted a multi-session user study with four BLV programmers, where, after an initial tutorial session, participants independently completed 12 distinct models across two testing sessions, achieving results that aligned with their own satisfaction. The result demonstrates that participants were able to comprehend provided 3-D models, as well as independently create and modify 3-D models—tasks that were previously impossible without assistance from sighted individuals.
ASSETS ’25, Denver, CO, USA
</summary>
<dc:date>2025-10-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Benthic: Perceptually Congruent Structures for Accessible Charts and Diagrams</title>
<link href="https://hdl.handle.net/1721.1/164074" rel="alternate"/>
<author>
<name>Mei⁎, Catherine</name>
</author>
<author>
<name>Pollock⁎, Josh</name>
</author>
<author>
<name>Hajas, Daniel</name>
</author>
<author>
<name>Zong, Jonathan</name>
</author>
<author>
<name>Satyanarayan, Arvind</name>
</author>
<id>https://hdl.handle.net/1721.1/164074</id>
<updated>2025-11-27T05:20:31Z</updated>
<published>2025-10-22T00:00:00Z</published>
<summary type="text">Benthic: Perceptually Congruent Structures for Accessible Charts and Diagrams
Mei⁎, Catherine; Pollock⁎, Josh; Hajas, Daniel; Zong, Jonathan; Satyanarayan, Arvind
Graphical representations — such as charts and diagrams — have a visual structure that communicates the relationship between visual elements. For instance, we might consider two elements to be connected when there is a line or arrow between them, or for there to be a part-to-whole relationship when one element is contained within the other. Yet, existing screen reader solutions rarely surface this structure for blind and low-vision readers. Recent approaches explore hierarchical trees or adjacency graphs, but these structures capture only parts of the visual structure — containment or direct connections, respectively. In response, we present Benthic, a system that supports perceptually congruent screen reader structures, which align screen reader navigation with a graphic’s visual structure. Benthic models graphical representations as hypergraphs: a relaxed tree structure that allows a single hyperedge to connect a parent to a set of children nodes. In doing so, Benthic is able to capture both hierarchical and adjacent visual relationships in a manner that is domain-agnostic and enables fluid (i.e., concise and reversible) traversal. To evaluate Benthic, we conducted a study with 15 blind participants who were asked to explore two kinds of graphical representations that have previously been studied with sighted readers. We find that Benthic’s perceptual congruence enabled flexible, goal-driven exploration and supported participants in building a clear understanding of each diagram’s structure.
ASSETS ’25, Denver, CO, USA
</summary>
<dc:date>2025-10-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quartz: A Reconfigurable, Distributed-Memory Accelerator for Sparse Applications</title>
<link href="https://hdl.handle.net/1721.1/164073" rel="alternate"/>
<author>
<name>Golden, Courtney</name>
</author>
<author>
<name>Feldmann, Axel</name>
</author>
<author>
<name>Emer, Joel</name>
</author>
<author>
<name>Sanchez, Daniel</name>
</author>
<id>https://hdl.handle.net/1721.1/164073</id>
<updated>2025-11-27T05:19:04Z</updated>
<published>2025-10-17T00:00:00Z</published>
<summary type="text">Quartz: A Reconfigurable, Distributed-Memory Accelerator for Sparse Applications
Golden, Courtney; Feldmann, Axel; Emer, Joel; Sanchez, Daniel
Iterative sparse matrix computations lie at the heart of many scientific computing and graph analytics algorithms. On conventional systems, their irregular memory accesses and low arithmetic intensity create challenging memory bandwidth bottlenecks. To overcome such bottlenecks, distributed-SRAM architectures are structured as an array of tiles, each with a processing element (PE) and a small local memory, to achieve very high aggregate memory bandwidth. However, current distributed-SRAM architectures suffer from either poor programmability due to over-specialized PEs or poor compute performance due to inefficient general-purpose PEs.&#13;
We propose Quartz, a new architecture that uses short dataflow tasks and reconfigurable PEs in a distributed-SRAM system to deliver both high performance and high programmability. Unlike traditional sparse CGRAs or on-die reconfigurable engines, Quartz allows reconfigurable compute to be highly utilized and scaled by (1) providing high memory bandwidth to each processing element and (2) introducing a task-level dataflow execution model that fits this new setting. Our execution model dynamically reconfigures each tile’s PE in response to inter-tile messages to execute tasks on local data. This execution model enables fine-grained data partitioning across tiles. To make execution efficient, we explore novel data partitioning techniques that use graph and hypergraph partitioning to minimize network traffic and balance load in the face of both static-static and static-dynamic operand sparsity. To ensure programmability, we show how a wide range of Einsum-expressible computations and flexible data distributions can be systematically captured in small tasks for execution on Quartz.&#13;
Quartz’s architecture, data partitioning techniques, and programming model together achieve gmean 21.4 × speedup over a prior state-of-the-art system for six different iterative sparse applications from scientific computing and graph analytics.
MICRO ’25, Seoul, Republic of Korea
</summary>
<dc:date>2025-10-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Converting Spatial to Social: Using Persistent Homology to Understand Social Groups</title>
<link href="https://hdl.handle.net/1721.1/164072" rel="alternate"/>
<author>
<name>Chen, Valerie</name>
</author>
<author>
<name>Liang, Claire</name>
</author>
<author>
<name>Shah, Julie</name>
</author>
<author>
<name>Andrist, Sean</name>
</author>
<id>https://hdl.handle.net/1721.1/164072</id>
<updated>2025-11-27T05:19:58Z</updated>
<published>2025-10-12T00:00:00Z</published>
<summary type="text">Converting Spatial to Social: Using Persistent Homology to Understand Social Groups
Chen, Valerie; Liang, Claire; Shah, Julie; Andrist, Sean
In social settings, people display sophisticated spatial behaviors—for example, one might naturally enter into a conversation by sidling up to a group. Artificial agents will need the ability to reason about spatial representations of social information to understand not only how social groups form, but also how to interact within and around them. Leveraging the insight that people reason about shared space topologically rather than geometrically, we employ techniques from applied topology to introduce a new method for social group analysis that improves quantifiability and enables rigorous analysis of social group structure. We present a novel topological mathematical formalism called the social simplicial complex that provides an equivalence relation for socially analogous configurations of people and is provably robust against small perturbations and noise. Moreover, this formalism suggests quantifiable metrics to assess the confidence of social group existence and the social closeness of people within groups. We further use this formalism to introduce an open-source toolkit for evaluating possible models of social relationships, which we name the Social Topological Analysis (SoTA) Toolkit. Finally, we explore algebraic topology’s potential to serve more generally as a powerful tool for multi-modal social data processing, and its possibilities for further applications in social-spatial analysis.
ICMI ’25, Canberra, ACT, Australia
</summary>
<dc:date>2025-10-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>LLMs in Citation Intent Classification: Progress, Precision, and Reproducibility Challenges</title>
<link href="https://hdl.handle.net/1721.1/164071" rel="alternate"/>
<author>
<name>Fogelson, Alex</name>
</author>
<author>
<name>Thompson, Neil</name>
</author>
<author>
<name>Trišović, Ana</name>
</author>
<id>https://hdl.handle.net/1721.1/164071</id>
<updated>2025-11-27T05:20:07Z</updated>
<published>2025-10-21T00:00:00Z</published>
<summary type="text">LLMs in Citation Intent Classification: Progress, Precision, and Reproducibility Challenges
Fogelson, Alex; Thompson, Neil; Trišović, Ana
Understanding the intent behind scientific citations is critical for&#13;
advancing scholarly search and knowledge mapping. This paper&#13;
reflects on the methodological use of large language models (LLMs)&#13;
for multi-class citation intent classification. Our experiments evaluating a diverse range of models and approaches reveal striking&#13;
disagreement among state-of-the-art (SotA) systems. This inconsistency suggests that citation intent classification remains a challenging task for LLMs raising questions about the robustness, reliability&#13;
and replicability of current methods. Moreover, our findings highlight a concerning dependency on proprietary LLMs that, even&#13;
with access to compute resources, were necessary to achieve sufficient accuracy. This introduces new challenges, as silent updates,&#13;
lack of versioning, and opaque training pipelines pose threats to&#13;
methodological transparency and long-term reproducibility in LLMenabled research.
ACM REP ’25, Vancouver, BC, Canada
</summary>
<dc:date>2025-10-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ancestral Technology: Inside Colombia’s Hidden Technological Landscape</title>
<link href="https://hdl.handle.net/1721.1/164070" rel="alternate"/>
<author>
<name>Reynolds-Cuellar, Pedro</name>
</author>
<id>https://hdl.handle.net/1721.1/164070</id>
<updated>2025-11-27T05:20:35Z</updated>
<published>2025-10-30T00:00:00Z</published>
<summary type="text">Ancestral Technology: Inside Colombia’s Hidden Technological Landscape
Reynolds-Cuellar, Pedro
Luz Marina Burgos’ fingers moved deliberately across the threads, constructing a tšombiach—a ceremonial sash commonly used to protect and strengthen the body. “This is the frog; to us, it represents fertility,” she explained, pointing to an emerging pattern. “This is the sun. Families weave it differently. This is how the tšombiach helps us tell our own story.” What I witnessed in this Colombian village was not simply craft—it was a technology for encoding and transmitting intergenerational knowledge.&#13;
&#13;
Passing most of my time between MIT and Harvard created a sense of technology as merely technical or socio-technical systems serving as a means to undetermined progress that only a few seem able to influence or have power over. A sense of relentless push towards the new, often at the expense of the old. Learning from Luz Marina, a traditional weaver from the Quillasinga Indigenous people, helped me make sense of radically different technological values, motivations and purposes. She is part of a centuries-long tradition of sustaining technologies designed for a different purpose entirely: cultural preservation. These technological systems solve immediate problems while maintaining the social fabric that makes problem-solving possible across generations.&#13;
&#13;
During five years of fieldwork in Colombia’s rural communities —ultimately leading to my doctoral dissertation— I encountered technologies that function according to entirely different logics than those driving “modern” narratives of innovation. I began —along with my collaborators in Colombia— conceptualizing these as “ancestral technologies”: forms of world-making —some of which take the form of artifacts— that primarily support cultural cohesion, remain rooted in specific geographies and carry their history through collective memory. Unlike modern technologies optimized for profit, efficiency or scale, these ancestral systems optimize for continuity and collective meaning. In an era when predictive technology sells the fantasy that unlimited computational power must be our goal as a society, perhaps the question is not whether we can build more powerful systems, but whether we can build systems that help us preserve what matters most.
</summary>
<dc:date>2025-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Asymmetric linker generates intrinsically disordered metal–organic framework with local MOF-74 structure</title>
<link href="https://hdl.handle.net/1721.1/164069" rel="alternate"/>
<author>
<name>Dinakar, Bhavish</name>
</author>
<author>
<name>Oppenheim, Julius J</name>
</author>
<author>
<name>Vandone, Marco</name>
</author>
<author>
<name>Torres, Juan F</name>
</author>
<author>
<name>Iliescu, Andrei</name>
</author>
<author>
<name>Yang, Zhentao</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Dincă, Mircea</name>
</author>
<id>https://hdl.handle.net/1721.1/164069</id>
<updated>2025-11-26T03:11:05Z</updated>
<published>2025-08-14T00:00:00Z</published>
<summary type="text">Asymmetric linker generates intrinsically disordered metal–organic framework with local MOF-74 structure
Dinakar, Bhavish; Oppenheim, Julius J; Vandone, Marco; Torres, Juan F; Iliescu, Andrei; Yang, Zhentao; Román-Leshkov, Yuriy; Dincă, Mircea
Here, we report an intrinsically disordered MOF in the MOF-74 family,&#13;
Mg2x(as-dobpdc) (as-dobpdc4 = 30&#13;
,4-dioxidobiphenyl-3,40&#13;
-dicarboxylate). Despite the absence of crystallinity, this material exhibits&#13;
local ordering consistent with that of its crystalline isomers, maintains&#13;
porosity, and exhibits a high density of open metal sites.
</summary>
<dc:date>2025-08-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sustainable aviation fuels from biomass and biowaste via bio- and chemo-catalytic conversion: Catalysis, process challenges, and opportunities</title>
<link href="https://hdl.handle.net/1721.1/164068" rel="alternate"/>
<author>
<name>Zhang, Junyan</name>
</author>
<author>
<name>Webber, Matthew S</name>
</author>
<author>
<name>Pu, Yunqiao</name>
</author>
<author>
<name>Li, Zhenglong</name>
</author>
<author>
<name>Meng, Xianzhi</name>
</author>
<author>
<name>Stone, Michael L</name>
</author>
<author>
<name>Wei, Bingqing</name>
</author>
<author>
<name>Wang, Xueqi</name>
</author>
<author>
<name>Yuan, Sainan</name>
</author>
<author>
<name>Klein, Bruno</name>
</author>
<author>
<name>Seemala, Bhogeswararao</name>
</author>
<author>
<name>Wyman, Charles E</name>
</author>
<author>
<name>Ramasamy, Karthikeyan K</name>
</author>
<author>
<name>Thorson, Mike</name>
</author>
<author>
<name>Langholtz, Matthew H</name>
</author>
<author>
<name>Heyne, Joshua S</name>
</author>
<author>
<name>Koishybay, Aibolat</name>
</author>
<author>
<name>Adhikari, Shiba</name>
</author>
<author>
<name>Cao, Sufeng</name>
</author>
<author>
<name>Sutton, Andrew D</name>
</author>
<author>
<name>Tuskan, Gerald A</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Ragauskas, Arthur J</name>
</author>
<author>
<name>Ling, Tao</name>
</author>
<author>
<name>Davison, Brian H</name>
</author>
<id>https://hdl.handle.net/1721.1/164068</id>
<updated>2025-11-26T03:11:03Z</updated>
<published>2025-06-01T00:00:00Z</published>
<summary type="text">Sustainable aviation fuels from biomass and biowaste via bio- and chemo-catalytic conversion: Catalysis, process challenges, and opportunities
Zhang, Junyan; Webber, Matthew S; Pu, Yunqiao; Li, Zhenglong; Meng, Xianzhi; Stone, Michael L; Wei, Bingqing; Wang, Xueqi; Yuan, Sainan; Klein, Bruno; Seemala, Bhogeswararao; Wyman, Charles E; Ramasamy, Karthikeyan K; Thorson, Mike; Langholtz, Matthew H; Heyne, Joshua S; Koishybay, Aibolat; Adhikari, Shiba; Cao, Sufeng; Sutton, Andrew D; Tuskan, Gerald A; Román-Leshkov, Yuriy; Ragauskas, Arthur J; Ling, Tao; Davison, Brian H
Sustainable aviation fuel (SAF) production from biomass and biowaste streams is an attractive option for decarbonizing the aviation sector, one of the most-difficult-to-electrify transportation sectors. Despite ongoing commercialization efforts using ASTM-certified pathways (e.g., lipid conversion, Fischer–Tropsch synthesis), production capacities are still inadequate due to limited feedstock supply and high production costs. New conversion technologies that utilize lignocellulosic feedstocks are needed to meet these challenges and satisfy the rapidly growing market. Combining bio- and chemo-catalytic approaches can leverage advantages from both methods, i.e., high product selectivity via biological conversion, and the capability to build C-C chains more efficiently via chemical catalysis. Herein, conversion routes, catalysis, and processes for such pathways are discussed, while key challenges and meaningful R&amp;D opportunities are identified to guide future research activities in the space. Bio- and chemo-catalytic conversion primarily utilize the carbohydrate fraction of lignocellulose, leaving lignin as a waste product. This makes lignin conversion to SAF critical in order to utilize whole biomass, thereby lowering overall production costs while maximizing carbon efficiencies. Thus, lignin valorization strategies are also reviewed herein with vital research areas identified, such as facile lignin depolymerization approaches, highly integrated conversion systems, novel process configurations, and catalysts for the selective cleavage of aryl C–O bonds. The potential efficiency improvements available via integrated conversion steps, such as combined biological and chemo-catalytic routes, along with the use of different parallel pathways, are identified as key to producing all components of a cost-effective, 100% SAF.
</summary>
<dc:date>2025-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Methods for Carbon Mass Closure in Polyolefin Hydrocracking</title>
<link href="https://hdl.handle.net/1721.1/164067" rel="alternate"/>
<author>
<name>Brenner, Anna E</name>
</author>
<author>
<name>Drake, Griffin</name>
</author>
<author>
<name>Beckham, Gregg T</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<id>https://hdl.handle.net/1721.1/164067</id>
<updated>2025-11-26T03:11:02Z</updated>
<published>2025-07-24T00:00:00Z</published>
<summary type="text">Methods for Carbon Mass Closure in Polyolefin Hydrocracking
Brenner, Anna E; Drake, Griffin; Beckham, Gregg T; Román-Leshkov, Yuriy
Heterogeneous catalytic hydrocracking of polyolefins is a promising approach for the processing of postconsumer plastics, but product quantification methods remain inconsistent across the literature. In systems that generate a large fraction of vapor-phase products, typical product capture methods can result in large carbon balance deficits, exceeding 50%, compromising reported yields and selectivities. Here, we identify the major sources of product loss and develop enhanced capture methods to improve the quantification accuracy. Seven supplemental techniques were evaluated, targeting either increased vapor recovery (by increasing the volatility or system volume) or enhanced retention in the liquid phase (by decreasing volatility). Among these, a flow collection approach using a continuous helium sweep and downstream gas sampling bag capture yielded the highest recovery, achieving a 96 ± 9.2% carbon balance closure. We show that the efficacy of these methods is strongly dependent on product distribution. In general, solvent addition was most effective when condensable species dominate the product distribution, while flow collection was preferred when both condensable species and light gases are present in high concentrations. These results highlight the need for method-specific workup strategies and demonstrate that no single protocol is universally optimal. We provide general guidelines for selecting and implementing robust product capture techniques, enabling accurate yield and selectivity determinations in polyolefin hydrocracking systems.
</summary>
<dc:date>2025-07-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Lignin Extraction and Condensation as a Function of Temperature, Residence Time, and Solvent System in Flow-through Reactors</title>
<link href="https://hdl.handle.net/1721.1/164066" rel="alternate"/>
<author>
<name>Brandner, David G</name>
</author>
<author>
<name>Gracia Vitoria, Jaime</name>
</author>
<author>
<name>Kenny, Jacob K</name>
</author>
<author>
<name>Bussard, Jeremy R</name>
</author>
<author>
<name>Jang, Jun Hee</name>
</author>
<author>
<name>Woodworth, Sean P</name>
</author>
<author>
<name>Vanbroekhoven, Karolien</name>
</author>
<author>
<name>Román-Leshkov, Yuriy</name>
</author>
<author>
<name>Beckham, Gregg T</name>
</author>
<id>https://hdl.handle.net/1721.1/164066</id>
<updated>2025-11-26T03:11:00Z</updated>
<published>2025-08-01T00:00:00Z</published>
<summary type="text">Lignin Extraction and Condensation as a Function of Temperature, Residence Time, and Solvent System in Flow-through Reactors
Brandner, David G; Gracia Vitoria, Jaime; Kenny, Jacob K; Bussard, Jeremy R; Jang, Jun Hee; Woodworth, Sean P; Vanbroekhoven, Karolien; Román-Leshkov, Yuriy; Beckham, Gregg T
Solvolytic extraction of lignin from biomass is a critical step in lignin-first biorefining, including the reductive catalytic fractionation (RCF) process. Key to optimal RCF processing is the ability to rapidly extract lignin from biomass at high delignification extents and transfer the lignin molecules to a catalyst surface in a time frame that minimizes lignin condensation reactions. Here, we use a flow-through reactor to study the effects of temperature (175-250 °C), residence time (9 to 36 min), and solvent composition (methanol and methanol-water) on lignin extraction and condensation. We evaluated three metrics at each condition: total delignification, delignification rate, and extent of condensation, the latter measured by a decrease in monomer yield for batch hydrogenolysis reactions of solvolysis liquor compared to batch RCF reactions. We observe that delignification is predominantly determined by temperature, while residence time dictates the lignin condensation extent. Moreover, the extent of both extraction and condensation increased in the methanol-water solvent system compared to that in the methanol system. Lignin extracted in methanol is stable up to 18-min residence times at or below 225 °C, while a majority of the lignin extracted in methanol-water is condensed with a 9-min residence time at 200 °C. These results can inform reactor designs and solvent selection for lignin-first biorefining processes that aim to physically separate the biomass and catalyst.
</summary>
<dc:date>2025-08-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Additive Manufacturing of Electrical Machines and Electronic Devices</title>
<link href="https://hdl.handle.net/1721.1/164065" rel="alternate"/>
<author>
<name>Cañada Pérez-Sala, Jorge</name>
</author>
<id>https://hdl.handle.net/1721.1/164065</id>
<updated>2025-11-26T03:04:38Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Additive Manufacturing of Electrical Machines and Electronic Devices
Cañada Pérez-Sala, Jorge
Recent advancements in the additive manufacture of electronics and electrical machines have led to successful demonstrations of 3D-printed passive (e.g., resistors, capacitors, inductors) and active (e.g., transistors) electronic components, as well as magnetic cores and power transfer devices. However, each new demonstration of 3D-printed functional devices has typically required increasingly specialized and expensive manufacturing hardware. This work opposes that trend by developing a technology capable of fabricating all such devices on a single, affordable machine: a material extrusion 3D printer. Material extrusion stands out among additive manufacturing technologies for its widespread availability and its compatibility with monolithic multi-material manufacturing, essential for the fabrication of functional electromagnetic devices. These attributes, together with its well-established ability to fabricate mechanically functional parts, make material extrusion a promising technology for the single-step fabrication of electronics and electrical machines, and for their monolithic integration into complex devices, such as custom functionalized prostheses, robots, and space exploration hardware. In this research, a desktop 3D printer was transformed into an almost-universal manufacturing machine capable of fabricating a myriad of electrically, magnetically, and mechanically functional devices, using various feedstock formats (e.g., filament, pellets, ink). With this machine, milestones such as the fabrication of the first semiconductorfree, fully 3D-printed logic gates, and that of the first fully 3D-printed motor, have been achieved. Built for under $4000 in parts, the modified 3D printer opens the door to the democratization of electronics and electrical machine manufacturing, empowering institutions and individuals alike, and serving as an educational tool to introduce advanced manufacturing to new generations. Additionally, this work investigates optimization strategies for planar inductors and alternative techniques for the creation of miniaturized, three-dimensional, electrically functional components via two-photon polymerization. By demonstrating novel methods and applications, this thesis advances the state of the art in the additive manufacture of electromagnetic devices and paves the way toward the decentralized fabrication of electrical machines and electronic devices.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Unified Theory of Representation Learning: How Hidden Relationships Power Algorithms that can Learn without Labels</title>
<link href="https://hdl.handle.net/1721.1/164064" rel="alternate"/>
<author>
<name>Hamilton, Mark T.</name>
</author>
<id>https://hdl.handle.net/1721.1/164064</id>
<updated>2025-11-26T03:04:36Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">A Unified Theory of Representation Learning: How Hidden Relationships Power Algorithms that can Learn without Labels
Hamilton, Mark T.
How does the human mind make sense of raw information without being taught how to see or hear? This thesis presents a unifying theory that describes how algorithms can learn and discover structure in complex systems, like natural images, audio, language, and video - without human input. This class of algorithms has the possibility to extend our own understanding of the world by helping us to see previously unseen patterns in nature and science. At the core of this thesis’ unified theory is the notion that relationships between deep network representations hold the key discover the structure of the world without human input. This work will begin with a few examples of this principle in action; discovering hidden connections that span cultures and millennia in the visual arts, discovering visual objects in large image corpora, classifying every pixel of our visual world, and rediscovering the meaning of words from raw audio, all without human labels. In the latter half of this thesis, we will present two unifying mathematical theories of unsupervised learning. The first will explain why relationships between deep features can rediscover the semantic structure of the natural world by connecting model explainability, cooperative game theory, and deep feature relationships. The second mathematical theory will show that relationships between representations can be used to unify over 20 common machine learning algorithms spanning 100 years of progress in the field of machine learning. In particular, we introduce a single equation that unifies classification, regression, large language modeling, dimensionality reduction, clustering, contrastive learning, and spectral methods. This thesis uses this unified equation as the basis for a “periodic table of representation learning” that predicts the existence of new types of algorithms. We show that one of these predicted algorithms is a state-of-the-art unsupervised image classification technique. Finally, this work will summarize the key findings and share ongoing and future directions.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Score Estimation for Generative Modeling</title>
<link href="https://hdl.handle.net/1721.1/164063" rel="alternate"/>
<author>
<name>Jayashankar, Tejas Kumar</name>
</author>
<id>https://hdl.handle.net/1721.1/164063</id>
<updated>2025-11-26T03:04:32Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Score Estimation for Generative Modeling
Jayashankar, Tejas Kumar
Recent advances in score-based (diffusion) generative models have achieved state-of-the-art sample quality across standard benchmarks. Building on the remarkable property of these models in estimating scores, this thesis presents three core contributions: 1) new objectives to reduce score estimation error, 2) a novel Bayesian-inspired optimization framework for solving inverse problems, and 3) a fast one-step generative modeling framework that is based on a novel amortized score estimation framework. In the first part of this thesis, we introduce two new score estimation objectives with applications to both implicit and diffusion-based generative models. To improve spectralbased non-parametric estimators, we propose a theoretically optimal parametric framework that learns the score by projecting it onto its top-L principal directions. Additionally, inspired by matrix-valued kernel methods, we present a second approach that lifts the score into the space of outer products, and minimizes the distance between the estimated and true scores in this higher-order space. In the second part, we shift focus from score estimation to leveraging diffusion models as data-driven priors for solving inverse problems. Centering our development around the problem of source separation, we introduce a novel algorithm inspired by maximum a posteriori estimation. This approach combines multiple levels of Gaussian smoothing with an α-posterior, enabling effective signal separation using only independent priors for the sources. We demonstrate the effectiveness of this method through its application to interference mitigation in digital communication signals. Finally, we outline how this framework can be naturally extended to tackle a broader class of inverse problems. In the final part, we return to the fundamental challenge of efficient sampling, which is critical for enabling practical data-driven engineering systems. We propose a novel generative modeling framework that enables training a one-step neural sampler from scratch. At the core of this method is a new objective based on multi-divergence minimization, guided by a novel approach for score estimation of mixture distributions. Our framework is simple to implement, stable during training, unifies several existing approaches, and achieves state-of-the-art performance in image generation tasks. Furthermore, we discuss how this framework can be naturally extended to multi-step neural sampling and adapted for fast posterior sampling—an essential component in simulation-based inverse problem solvers.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Superconducting Nanowire Integrated Circuits for Scalable Cryogenic Memory</title>
<link href="https://hdl.handle.net/1721.1/164062" rel="alternate"/>
<author>
<name>Medeiros, Owen A.</name>
</author>
<id>https://hdl.handle.net/1721.1/164062</id>
<updated>2025-11-26T03:04:30Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Superconducting Nanowire Integrated Circuits for Scalable Cryogenic Memory
Medeiros, Owen A.
Superconducting nanowire integrated circuits (SNICs) are a promising class of cryogenic electronics that harness the zero resistance, high kinetic inductance, and nanoscale geometry of ultrathin superconducting wires to implement logic, memory, amplification, and sensing with minimal energy dissipation. Unlike Josephson-junction-based circuits, SNICs support compact, planar layouts compatible with single-layer fabrication and operation in unshielded cryogenic environments. This thesis develops superconducting nanowire memory (SNM) as a scalable implementation of SNICs. A modular cell architecture is introduced, exploiting hysteretic switching and inductive asymmetry to enable nonvolatile digital state storage with zero static power consumption. A hierarchical design framework is established, combining automated layout generation, electrothermal simulation in LTspice, and microscopic modeling using the time-dependent Ginzburg–Landau (TDGL) formalism. To enable scalable integration, this work implements a row–column SNM array layout and demonstrates fabrication across full 4-inch wafers using a planar, singlelayer process. Cryogenic measurements validate reliable operation in both single cells and multi-cell arrays, confirming the predictive accuracy of the design and modeling framework. Tradeoffs in bias current levels, pulse timing, and read/write conditions are systematically evaluated through cryogenic measurements, revealing their impact on bit error rate, operational margins, and energy efficiency across single cells and arrays. Together, these contributions establish SNICs as a viable and extensible platform for cryogenic memory, providing the tools, models, and infrastructure needed to enable broader adoption in quantum computing, neuromorphic systems, and other energy-constrained cryogenic applications.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Next Generation Operating Systems for the Datacenter</title>
<link href="https://hdl.handle.net/1721.1/164061" rel="alternate"/>
<author>
<name>Fried, Joshua</name>
</author>
<id>https://hdl.handle.net/1721.1/164061</id>
<updated>2025-11-26T03:04:08Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Next Generation Operating Systems for the Datacenter
Fried, Joshua
Modern datacenters face a fundamental challenge: handling demanding real-time and dataintensive workloads that require both microsecond-scale low latency and high throughput, while simultaneously achieving high resource utilization and efficient multi-tenancy. Traditional operating systems, designed for an era of slower hardware, introduce significant overheads to microsecond-scale I/O that prevent applications from exploiting the full performance of the underlying hardware. Furthermore, their millisecond-scale resource management is ill-equipped to handle the microsecond-level burstiness of modern workloads, leading to costly overprovisioning and idle resources. Recognizing the performance limitations imposed by traditional OSes, a common workaround has emerged: letting applications communicate directly with hardware, bypassing the OS entirely. While this approach offers performance gains by removing the OS from the critical path, existing kernel-bypass solutions require dedicated resources, extensive application rewrites, and provide weak isolation, making them unsuitable for general-purpose, shared environments. This thesis presents a new datacenter operating system, composed of three integrated systems: Shenango, Caladan, and Junction. Together, they preserve the high-performance, low-overhead I/O benefits of kernel bypass, while providing efficient resource management, strong isolation for multi-tenant workloads, and compatibility with unmodified software. First, Shenango enables applications to bypass traditional OS-mediated I/O without dedicating CPU cores solely to polling. Next, Caladan ensures that idle resources can be used productively by other applications by actively managing competition for microarchitectural resources, thereby preserving each application’s high I/O performance and responsiveness. Finally, Junction overcomes several common limitations of kernel-bypass solutions, bringing these benefits to all applications by preserving compatibility with existing software and reducing memory and polling overheads. Collectively, these systems provide the advantages of direct hardware access without sacrificing the flexibility or efficiency of a general-purpose operating system. This work demonstrates that high I/O performance, efficient resource utilization, and broad application compatibility can indeed coexist, paving the way for a new generation of datacenter operating systems.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Systematic Development of Healthcare AI: From Data Curation,&#13;
Algorithm Optimization, Benchmark Design and Clinical Applications</title>
<link href="https://hdl.handle.net/1721.1/164060" rel="alternate"/>
<author>
<name>Gao, Mingye</name>
</author>
<id>https://hdl.handle.net/1721.1/164060</id>
<updated>2025-11-26T03:04:22Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Systematic Development of Healthcare AI: From Data Curation,&#13;
Algorithm Optimization, Benchmark Design and Clinical Applications
Gao, Mingye
Artificial intelligence (AI) has brought transformative changes to healthcare industry in the recent years from various aspects, such as patient care, disease diagnosis and medical research. As healthcare systems worldwide face increasing pressure from aging populations and rising chronic disease rates, there is an urgent need for systematic approaches to develop reliable and safe AI solutions. This thesis advances the systematic development of healthcare AI through four interconnected components: data curation, algorithm optimization, benchmark design, and clinical applications. The primary contribution of this thesis focuses on establishing a comprehensive pipeline for healthcare large language models (LLMs), spanning from data curation to clinical deployment. At the data level, a rule-based filtering framework was developed to select high-quality subsets from the large pre-training corpora, significantly improving both continue pre-training and fine-tuning performance of LLMs. For safety alignment, an automated pipeline was developed for preference learning that includes preference dataset synthesis, rule-based and data-adaptive annotation, and reward model training. Additionally, two novel benchmarks were created to ensure reliability and safety of LLMs in healthcare tasks: one assessing demographic biases of LLMs across common diseases, while another assessing models’ ability to reject illogical requests from users in drug-related scenarios. Finally, LLMs were used to generating patient-friendly educational content for clinical trials, demonstrating their role in improving patient education and engagement in clinical trials. This systematic progression from data to deployment establishes a blueprint for developing safe and effective language models in healthcare settings. Beyond language models, machine learning techniques were applied on an additional healthcare task. In this project, a novel approach combining normalized cross-correlation and attention graph convolutional recurrent networks was developed to realize contactless, continuous and reliable radar-based vital signs monitoring in dynamic home environments. Through systematic data collection and algorithm optimization, the accurate heart rate can be obtained across varying radar-subject distances (2-2.5m) and subject orientations, demonstrating robust performance in real-world conditions through extensive validation in four test houses with six subjects. Collectively, these contributions advance healthcare AI development across 2 fronts: establishing frameworks for safe and effective deployment of language models in healthcare settings and enabling reliable and continuous health monitoring at-home without wearable devices.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>SERenaDE: Hardware Acceleration of Cloud Serialization Frameworks</title>
<link href="https://hdl.handle.net/1721.1/164059" rel="alternate"/>
<author>
<name>Zarkos, Christos V.</name>
</author>
<id>https://hdl.handle.net/1721.1/164059</id>
<updated>2025-11-26T03:06:36Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">SERenaDE: Hardware Acceleration of Cloud Serialization Frameworks
Zarkos, Christos V.
Serialization frameworks are a fundamental operation of datacenters, as they enable language- and platform-neutral communication and storage. However, software serialization faces major performance bottlenecks, resulting in a significant fraction of cloud cycles dedicated to this process. Prior work has proposed specialized hardware accelerators to address these overheads. While these proposals achieve considerable speedups, they are expensive in terms of verification, fabrication, and deployment, and often hardcode too many details about the (de)serialization framework in hardware. We propose SERenaDE, a serialization framework designed to integrate general-purpose accelerators currently deployed in datacenters in order to accelerate and offload serialization to hardware. Specifically, we repurpose the Intel In-Memory Analytics Accelerator (IAA), an accelerator engine offering fast compression, to enable fast and transparent to the user serialization and deserialization, completely removing software serialization from the execution pipeline. We evaluate our system on latest-generation production machines, both with synthetic microbenchmarks, and open-source representative fleet-wide benchmarks. Our results show comparable performance in terms of per-request latency across all types of messages, while significantly improving throughput - especially at the tail -, maintaining thread scalability and achieving high compression ratios alongside substantial speedups for larger messages. Under 95th latency percentile latency constraints SERenaDE improves serialization and deserialization throughput by 13% and 30% respectively, while achieving from 0.2x to 6.94x smaller serialized message sizes for messages of a total memory layout larger than 4KB.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modeling Biomolecular Interactions with Generative Models</title>
<link href="https://hdl.handle.net/1721.1/164058" rel="alternate"/>
<author>
<name>Corso, Gabriele</name>
</author>
<id>https://hdl.handle.net/1721.1/164058</id>
<updated>2025-11-26T03:04:11Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Modeling Biomolecular Interactions with Generative Models
Corso, Gabriele
In 2021, DeepMind’s AlphaFold2 revolutionized single-chain protein structure prediction achieving atomic accuracy, solving a longstanding challenge in biology. However, understanding biomolecular interactions, a critical problem for advancing drug discovery and biological research, remained unsolved. This thesis presents our research to redefine the machine learning approach to this problem, modeling structures with a new generative paradigm and tailoring the neural architectures and learning tasks to the specific challenges that arose. These ideas combined with significant engineering efforts led us to develop a class of open-source models from DiffDock to the recent Boltz-1. These have significantly pushed our ability to understand biomolecular interactions, they have been widely adopted in industry and academia to help with drug development and protein design and they have opened the door to new research paradigms to push biological research further.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Designing Hardware Accelerators for Solving Sparse Linear&#13;
Systems</title>
<link href="https://hdl.handle.net/1721.1/164057" rel="alternate"/>
<author>
<name>Feldmann, Axel</name>
</author>
<id>https://hdl.handle.net/1721.1/164057</id>
<updated>2025-11-26T03:03:14Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Designing Hardware Accelerators for Solving Sparse Linear&#13;
Systems
Feldmann, Axel
Solving sparse linear systems is a key primitive that sits at the heart of many important numeric algorithms. Because of this primitive’s importance, algorithm designers have spent many decades optimizing linear solvers for high performance hardware. However, despite their efforts, existing hardware has let them down. State-of-the-art linear solvers often utilize &lt; 1% of available compute throughput on existing architectures such as CPUs and GPUs. There are many different algorithms used to solve sparse linear systems. These algorithms are diverse and often have very different computational bottlenecks. These include low arithmetic intensity, fine-grained parallellism, tight dependences, and sparsity-induced load imbalance. This thesis studies the problem of designing hardware accelerators for sparse linear solvers. We propose three novel architectures that explore different parts of the design space. The accelerators exploit static sparsity as the basis of novel hardware-software co-designed scheduling approaches. First, we introduce Spatula, an architecture designed to accelerate direct solvers. Then, we propose Azul, a hardware accelerator targeted at iterative solvers. Taken together, Spatula and Azul demonstrate significant speedups on both of the main classes of sparse linear solver algorithms. Finally, to show that our techniques are useful for end-to-end applications, we present Ōmeteōtl, an accelerator targeted at applications that use iterative solvers in their inner loop. Ōmeteōtl also shows that the techniques in this thesis generalize to sparse matrix computations beyond linear solvers. These accelerators deliver order-of-magnitude speedups over state-of-the-art GPU baselines, achieving &gt; 100× speedups on many inputs.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Physics-Optimized Design of 3D Shapes with Part-Based Control</title>
<link href="https://hdl.handle.net/1721.1/164056" rel="alternate"/>
<author>
<name>Zhan, Sean</name>
</author>
<id>https://hdl.handle.net/1721.1/164056</id>
<updated>2025-11-26T03:06:39Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Physics-Optimized Design of 3D Shapes with Part-Based Control
Zhan, Sean
We introduce PhysiOPart, a computational approach for rapid generative design of 3D objects optimized for physical integrity. PhysiOPart enables users to edit and combine object parts to explore a vast design space. To model continuous surfaces of arbitrary resolution without topology restrictions, we parametrize parts with neural implicit representations. However, when parts are assembled to form an object, the resulting geometry is not guaranteed to be functional. Existing generative modeling approaches use task-specific neural predictors to approximate physical behaviors with limited accuracy. We propose an end-to-end differentiable physics simulation pipeline that performs linear static analysis to optimize for user-specified objectives, leveraging learned geometry priors. Our part-based formulation with finite element method is highly customizable, allowing for user-defined per-part materials, loads, and boundary conditions. The optimized designs exhibit improved physical behavior and can be fabricated.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fast Assembly of Curved Structures from Flat Configuration</title>
<link href="https://hdl.handle.net/1721.1/164055" rel="alternate"/>
<author>
<name>Zaman, Akib</name>
</author>
<id>https://hdl.handle.net/1721.1/164055</id>
<updated>2025-11-26T03:06:43Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Fast Assembly of Curved Structures from Flat Configuration
Zaman, Akib
Imagine deploying an emergency shelter that transitions seamlessly from a flat configuration to a lifted structure, or a folded robot that is sent through a tunnel and subsequently activated to expand into a larger form at the endpoint, with a single, collective pull of strings. This scenario raises two critical questions: (i) how to decompose the structure into a flat state that encodes the 3D geometry, and (ii) where to place strings through the unit modules to achieve complete actuation. Although these questions have been explored individually, comprehensive solutions remain scarce. To address this challenge, this thesis presents a computational approach for designing freeform structures that can be rapidly assembled from initially flat configurations by a single string pull. Target structures are decomposed into rigid, spatially varied quad tiles optimized to approximate a user-provided surface, forming a flat mechanical linkage. A two-step algorithm is then applied to determine a physically realizable string path that controls only a subset of tiles, enabling smooth actuation from flat to assembled configuration. First, the minimal subset of tiles required for string control is computed by considering both the structure’s geometry and inter-tile interactions. Second, a valid string path is identified through these tiles that minimizes friction, thereby transforming the flat linkage into the target 3D form upon tightening a single string. The resulting designs can be manufactured in flat form using computational fabrication techniques: such as 3D printing, CNC milling, or molding, thereby simplifying both production and transportation. Validation is provided through a series of physical prototypes and application case studies, ranging from medical devices and space shelters to large-scale architectural installations.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Theoretical Foundations for Learning in Games and Dynamic Environments</title>
<link href="https://hdl.handle.net/1721.1/164054" rel="alternate"/>
<author>
<name>Golowich, Noah</name>
</author>
<id>https://hdl.handle.net/1721.1/164054</id>
<updated>2025-11-26T03:04:04Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Theoretical Foundations for Learning in Games and Dynamic Environments
Golowich, Noah
Decision-making problems lie at the heart of numerous aspects of human and algorithmic behavior across our society, ranging from healthcare systems to financial systems to interactions with the physical world. A central challenge that arises across many decision-making problems is the presence of multiple agents, often with competing incentives. To understand how agents will act in such situations, it is often productive to compute equilibria, which have the property that no agent can deviate from them and improve their utility. An additional challenge is that decisions made by agents often change the state of the environment, which is modeled as dynamic. Thus, we need efficient algorithms for learning good policies, which tell the agent what to do as a function of the environment’s state. Extensive work spanning multiple domains such as economics, computer science, and statistics has been developed to model these decision-making problems. This has led to many celebrated results, which include, for instance, a considerable body of work studying the computational properties of Nash equilibria in normal-form games, and a long line of papers on reinforcement learning. However, many of these classical works suffer from a few shortcomings: first, they often do not account for the enormous state or action spaces available to agents in realistic decision-making settings, and second, many of them do not derive computationally efficient algorithms for the desired solution concepts. These shortcomings are brought to the forefront by the remarkable recent progress in artificial intelligence, which holds promise for solving decision-making problems with enormous state or action spaces but which is often bottlenecked by computation. The objective of this thesis is to develop theoretical foundations for the computational aspects of such decision-making problems: e.g., How do we efficiently compute equilibria in large games?, and: How can we efficiently learn near-optimal policies in complex environments? Some highlights of our results are listed below—first, we study problems in which there are multiple agents and the goal is to compute some notion of equilibrium: • We show the first near-optimal rate of convergence to equilibrium for a no-regret learning algorithm in normal-form games, resolving a decade-long line of work which had aimed to establish increasingly better rates. • We establish the first algorithm with sublinear swap regret against arbitrary adversaries enjoying only polylogarithmic dependence on the number of actions, resolving a question of Blum and Mansour from 2007. • As a corollary of the preceding result, we obtain the first polynomial-time algorithm for approximating a correlated equilibrium in extensive-form games (to constant approximation error), addressing a question of von Stengel &amp; Forges from 2008. Additionally we obtain near-optimal bounds on the communication and query complexity of approximating correlated equilibria in normal-form games (to constant approximation error), addressing several open problems in the literature. • We give the first algorithm for the sequential calibration problem with calibration error beating that of the seminal work of Foster &amp; Vohra from 1998. Moving on to decision-making problems where the environment is modeled as dynamic (typically studied in the framework of reinforcement learning (RL)), our results include the following: • We give the first end-to-end computationally efficient algorithms for learning a nearoptimal policy in many fundamental reinforcement learning problems, such as those of (constant-action) Linear Bellman Complete MDPs and sparse linear MDPs. • We give the first quasi-polynomial time algorithm for finding a near-optimal policy in a general and well-motivated class of partially observable RL environments, and show that our bound is tight. • We prove some (perhaps surprising) hardness results that arise in multi-agent RL problems. For instance, we show that it is computationally hard to implement noregret learning algorithms in multi-agent RL environments even when the agents can coordinate on their choice of algorithm, which creates a stark contrast with simpler multi-agent learning settings (e.g., in normal-form games) where no-regret learning has formed the bedrock for a wide array of developments over the last several decades. • Nevertheless, we show that by adjusting the type of equilibrium appropriately, we can circumvent the above hardness results and derive computationally efficient decentralized algorithms for computing equilibria in multi-agent RL environments. Many of the above results have inspired follow-up work which includes applications of our results to various problems in game theory, reinforcement learning, online learning, and related domains, as well as the formulation of new problems which are inspired by the above results.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Characterizing human vision through large-scale brain imaging and computational models</title>
<link href="https://hdl.handle.net/1721.1/164053" rel="alternate"/>
<author>
<name>Lahner, Benjamin</name>
</author>
<id>https://hdl.handle.net/1721.1/164053</id>
<updated>2025-11-26T03:04:19Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Characterizing human vision through large-scale brain imaging and computational models
Lahner, Benjamin
Efforts to understand the neural underpinnings of human visual processing require sufficient experimental data and robust models. This thesis significantly contributes to both these fronts while simultaneously elucidating some of the most intriguing aspects of the human visual system. In the first chapter, I use a combination of classical machine learning, artificial neural networks, and a joint MEG/fMRI neuroimaging dataset to reveal that the human visual system extensively processes highly memorable images in regions distributed throughout visual cortex late in time. In the second chapter, I present the BOLD Moments Dataset, a large-scale fMRI dataset using short video stimuli to extend computational models of visual processing into the video domain to better understand how humans process visual content unfolding over time. The last chapter introduces a fMRI dataset aggregation framework titled MOSAIC to achieve the scale and stimulus diversity needed for training modern neural networks directly on brain responses. This body of work exemplifies how large-scale experimental data and artificial neural networks can contribute towards a robust and generalizable understanding of human visual processing.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wireless Systems for a Sustainable Future: From Battery-Free Subsea IoT to THz-Based Agriculture Monitoring</title>
<link href="https://hdl.handle.net/1721.1/164052" rel="alternate"/>
<author>
<name>Afzal, Sayed Saad</name>
</author>
<id>https://hdl.handle.net/1721.1/164052</id>
<updated>2025-11-26T03:03:54Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Wireless Systems for a Sustainable Future: From Battery-Free Subsea IoT to THz-Based Agriculture Monitoring
Afzal, Sayed Saad
This thesis describes how wireless sensing can drive significant advancements in climate and sustainability. Specifically, it shows how we can leverage diverse signals—acoustics, ultrasound, THz, and optics— in unconventional ways to unlock new capabilities in underwater climate monitoring, food safety, and disaster response. The thesis introduces two novel technologies. The first technology enables long-term, ultra-low power ocean sensor networks for use in climate modeling, marine monitoring, and sustainable aquaculture. Unlike existing IoT technologies – like Bluetooth, WiFi, and GPS – which cannot work underwater, we design and implement an ultra-low power subsea backscatter communication system, enabling battery-free underwater imaging, sensing and localization. Second, the thesis describes a new technology that can support sustainability in agriculture through real-time food quality assessment that reduces food waste. In contrast to existing food quality technologies that require direct contact with produce, we introduce a new wireless system for accurate, non-invasive sensing using sub-THz signals. We describe the design, implementation, and evaluation of multiple systems that leverage these technologies to monitor the ocean and food waste: First, we present a ultra-wideband metamaterial sensor design that facilitates scalable, and long-range battery-free underwater communication. Next, we describe a system that can push the throughput of this technology using higher order modulation. Beyond building sensor networks, we demonstrate their real-world potential through two systems: one for underwater localization that uses rich spatio-temporal-spectral features for accurate positioning, and another for battery-free imaging that fuses acoustic and optical signals to capture color images in the dark. Finally, we present a novel solution for accurate fruit ripeness sensing using sub-terahertz wireless signals. These systems unlock new IoT applications in climate modeling, aquaculture, robotics, and agriculture.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Automatic Integration and Differentiation of Probabilistic Programs</title>
<link href="https://hdl.handle.net/1721.1/164051" rel="alternate"/>
<author>
<name>Lew, Alex K.</name>
</author>
<id>https://hdl.handle.net/1721.1/164051</id>
<updated>2025-11-26T03:04:14Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Automatic Integration and Differentiation of Probabilistic Programs
Lew, Alex K.
This thesis addresses the challenge of automating fundamental operations from probability theory and calculus on probability distributions defined by higher-order probabilistic programs. It does this by developing a suite of composable program transformations for an expressive core calculus for probabilistic programming: • Integration: Compiling a probabilistic program into a deterministic representation of its expectation operator, handling potentially intractable integrals symbolically. • Unbiased estimation: Transforming programs involving intractable operations (like integration) into runnable probabilistic programs that yield provably unbiased estimates of the original value, with flexible levers for users to navigate cost-variance trade-offs. • Radon-Nikodym differentiation: Compiling probabilistic programs into implementations of a novel interface for the unbiased estimation of density ratios, of the sort that arise in Monte Carlo and variational inference. • Differentiation: Extending automatic differentiation (AD) to compose with the above transformations, enabling the optimization of expected values and density ratios of probabilistic programs. These transformations operate on an expressive higher-order probabilistic programming language and are proven correct using denotational semantics and logical relations. The resulting framework enables the sound and automated implementation of a wide range of algorithms for probabilistic inference and learning. To demonstrate the practical value of these techniques, we use them to implement three systems for scalable probabilistic inference in different domains: (1) extensions to the Gen probabilistic programming system that accelerate and automate a broad range of Monte Carlo and variational inference algorithms, (2) the PClean system for automated Bayesian reasoning about relational data, and (3) the GenLM system for controllable generation from language models. We find that our techniques enable these systems to scale to a variety of complex, real-world problems, and to achieve state-of-the-art performance on a range of benchmarks.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Minimizer-space computation</title>
<link href="https://hdl.handle.net/1721.1/164050" rel="alternate"/>
<author>
<name>Ekim, Barış C.</name>
</author>
<id>https://hdl.handle.net/1721.1/164050</id>
<updated>2025-11-26T03:03:41Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Minimizer-space computation
Ekim, Barış C.
As the volume of DNA sequencing data increases, the need for algorithmic advances to efficiently handle the data arises. One such concept is minimizers, which are genomic substrings that allow for reduced representations of larger DNA sequences. In this thesis, we introduce minimizer-space computation as a new algorithmic paradigm for DNA sequence analysis. Instead of DNA nucleotides, we consider minimizers as the letters of an extended alphabet in which algorithms operate. We present several techniques on how to efficiently construct these extended alphabets, demonstrate how to develop approaches that use these alphabets and consequently use only a fraction of sequence data, and show how fundamental biological tasks, such as genome assembly and read mapping, can be significantly accelerated over state-of-the-art methods.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Performant and Resilient Service Composition for Modern Cloud Applications</title>
<link href="https://hdl.handle.net/1721.1/164049" rel="alternate"/>
<author>
<name>Li, Tianyu</name>
</author>
<id>https://hdl.handle.net/1721.1/164049</id>
<updated>2025-11-26T03:04:07Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Performant and Resilient Service Composition for Modern Cloud Applications
Li, Tianyu
Modern cloud applications are often distributed systems composed from vendor-provided building blocks (e.g., object storage services, container orchestration services). Consequently, distributed fault-tolerance is a central concern for application correctness. Although each building block may offer individual fault-tolerance, the end-to-end application is still susceptible to failures, because the composition logic that orchestrates them may still fail. This thesis explores resilient composition, a systematic way to assemble fault-tolerant components into resilient end-to-end distributed applications. We begin by presenting the fail-restart system model, which captures the unique fault-tolerance challenges that arise when composing services. Based on this model, we define Composable Resilient Steps (CReSt), an atomic programming abstraction that guarantees fault-tolerance across the assembled application. We then detail efficient methods for implementing CReSt using a range of database techniques, and a novel distributed protocol that allow optimistic, speculative execution ahead of slower fault-tolerance safeguards. Together, these pieces allow developers to assemble fault-tolerant distributed systems that are correct by construction and often more performant than existing solutions.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Succinct Cryptography via Propositional Proofs</title>
<link href="https://hdl.handle.net/1721.1/164048" rel="alternate"/>
<author>
<name>Mathialagan, Surya</name>
</author>
<id>https://hdl.handle.net/1721.1/164048</id>
<updated>2025-11-26T03:03:29Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Succinct Cryptography via Propositional Proofs
Mathialagan, Surya
The goal in modern cryptography is to obtain security while minimizing the use of computational resources. In recent years, we have been incredibly successful in our pursuit for efficiency, even for cryptographic tasks that were thought to be “science fiction”. For example, we have constructions of fully homomorphic encryption and private information retrieval from standard, cryptographic assumptions which achieve the ideal levels of succinctness. However, there are still some tasks in cryptography where achieving the “ideal” efficiency from standard assumptions has evaded us. In this thesis, we study the problem of achieving succinctness in two such settings: • Can we construct succinct indistinguishability obfuscation (IO) for Turing machines? In particular, can we construct an obfuscated program whose size is independent of the input length? • Can we construct succinct non-interactive arguments (SNARGs) for all of NP? While the problems seem unrelated at first glance, the root difficulty seems to stem from a similar place: both primitives have non-falsifiable security definitions. In fact, this type of barrier exists for many other cryptographic primitives, including witness encryption. This leads to a central question which we refer to as the “non-falsifiability barrier”: how can we construct non-falsifiable primitives from falsifiable assumptions? In this thesis, we show how to leverage propositional proofs to overcome the non-falsifiability barrier, and make substantial progress in the goal of achieving succinctness in both settings. Our main result is universal construction of both SNARGs and succinct IO for Turing machines from standard assumptions using propositional proofs. We then show several applications, including rate-1 IO for many programs, the first succinct secret sharin schemes for monotone circuits, and many more. Our results establish propositional proofs as a foundational tool for achieving succinctness across a broad range of cryptographic settings.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Statistical and Algorithmic Thresholds in Spin Glasses</title>
<link href="https://hdl.handle.net/1721.1/164047" rel="alternate"/>
<author>
<name>Huang, Brice</name>
</author>
<id>https://hdl.handle.net/1721.1/164047</id>
<updated>2025-11-26T03:03:59Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Statistical and Algorithmic Thresholds in Spin Glasses
Huang, Brice
This thesis studies spin glasses, disordered complex systems originating in statistical physics. Such systems model optimization, sampling, and inference problems from probability and statistics, which are of fundamental importance to modern data science. In particular, spin glasses provide natural examples of random, high-dimensional, and often highly non-convex cost or log-likelihood functions, making them an excellent testing ground for such questions. Part I of this thesis studies statistical properties of these models. Chapter 2 identifies the storage capacity of the Ising perceptron, a simple model of a neural network, subject to a numerical condition. This gives a conditional proof of a 1989 conjecture of Krauth and M´ezard. Chapter 3 gives a new proof of the celebrated Parisi formula for the free energy of the spherical mean-field spin glass, which was first proved by Talagrand and in more generality by Panchenko. Our proof takes a simpler modular approach, drawing on recent advances in spin glass free energy landscapes due to Subag. Chapter 4 characterizes the topology trivialization phase transition of multi-species spherical spin glasses and shows that lowtemperature Langevin dynamics finds the ground state in the topologically trivial regime; the latter result is new even in the single-species setting. Part II of this thesis concerns algorithms for optimization and sampling problems on spin glasses. Chapter 5 studies the problem of optimizing the Hamiltonian of a multi-species spherical spin glass. Our main result exactly characterizes the maximum value attainable by a class of algorithms that are suitably Lipschitz in the disorder. This class includes gradient-based algorithms and Langevin dynamics on constant time scales, and in particular includes the best algorithm known for this problem. This chapter is part of a series of works where we establish exact algorithmic thresholds using the branching overlap gap property (OGP), a landscape property introduced in our earlier work (which appears in our S.M. thesis). In this chapter, we develop a more robust way to establish the branching OGP that does not require Guerra’s interpolation; this allows our method to be applied to models well beyond the (single-species) mean-field spin glass we previously considered. Chapters 6 and 7 study sampling from the Gibbs measure of a spherical mean-field spin glass. Chapter 6 develops a sampling algorithm based on simulating Eldan’s stochastic localization scheme, while Chapter 7 analyzes simulated annealing of Langevin dynamics. We prove both algorithms succeed for inverse temperatures up to a stochastic localization threshold. Chapter 6 gives the first stochastic localization-based sampler with a guarantee of vanishing total variation error, improving on earlier algorithms with vanishing Wasserstein error. Chapter 7 provides the first provable guarantees for a Markov chain in this model beyond the uniqueness threshold, where mixing from worst-case initialization is provably slow.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Cavity-Coupled Rydberg Atom Array for Quantum Science and Quantum Computing</title>
<link href="https://hdl.handle.net/1721.1/164046" rel="alternate"/>
<author>
<name>Hu, Beili</name>
</author>
<id>https://hdl.handle.net/1721.1/164046</id>
<updated>2025-11-26T03:03:16Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">A Cavity-Coupled Rydberg Atom Array for Quantum Science and Quantum Computing
Hu, Beili
Neutral atom arrays have rapidly emerged as a leading platform for quantum computing, boasting scalable, configurable arrays of single atoms trapped in optical tweezers, fast, high-fidelity entangling gates through Rydberg interactions, and programmable, parallelized control of qubit operations. Coupling an atom array to an optical cavity opens a new frontier. Leveraging enhanced light-atom interactions in cavity quantum electrodynamics, cavity- coupled atom arrays acquire capabilities that can further expand the neutral atom toolbox, including cavity-enhanced atom readouts, atom-photon entanglement, and photon-mediated interactions between distant atoms.&#13;
&#13;
This thesis presents a quantum hardware platform that integrates an array of neutral atoms with a high-finesse optical cavity. After describing the design and development of the experimental apparatus, I demonstrate high-fidelity atom state readout through the cavity, achieving improved speed and atom survival compared to conventional free-space imaging methods. I then introduce a new technique for selectively controlling atom-cavity coupling on arbitrary subsets of the array, using local AC Stark shifts on the excited states of the atoms. Building on these tools, I demonstrate fast, non-destructive cavity-based readout of atom arrays, a crucial bottleneck of atom array platforms. I also showcase real-time measurement and feedback capabilities with a demonstration of classical error correction, using a register of atomic bits. Finally, I describe progress toward implementing single- and two-qubit gates within the cavity-coupled system. By combining coherent control, tunable interactions, and high-fidelity, non-destructive readout integrated and real-time feedback, the cavity-coupled Rydberg atom array offers a promising path toward fault-tolerant quantum computing.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Estimation, Prediction and Counterfactual Inference with Dependent Observations</title>
<link href="https://hdl.handle.net/1721.1/164045" rel="alternate"/>
<author>
<name>Kandiros, Anthimos Vardis</name>
</author>
<id>https://hdl.handle.net/1721.1/164045</id>
<updated>2025-11-26T03:03:46Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Estimation, Prediction and Counterfactual Inference with Dependent Observations
Kandiros, Anthimos Vardis
The success of modern data science is largely driven by access to large-scale, high dimensional data. Much of classical machine learning has been developed under the assumption that this data is generated independently from some distribution. However, this assumption is often violated when data exhibit complex dependencies across a spatial or temporal domain, or due to social interactions. In this thesis, our goal is to design and analyze methods that address these dependencies for performing three fundamental estimation tasks: unsupervised learning, supervised learning and counterfactual inference. In supervised learning, we observe a sequence of unlabeled examples and our goal is to infer some structural property from the distribution they came from. The presence of dependencies could severely complicate this question. Our results in this direction encompass both fully observable as well as latent variable models. For fully observable models, we use the celebrated Ising model to describe the dependencies. Assuming we have access to a single sample from some Ising model, which captures a variety of real-world scenarios, we design and analyze polynomial time algorithms for recovering the matrix corresponding to the network structure of the model. We then leverage these techniques to obtain improved guarantees for estimating Ising models in Total Variation (TV) distance from multiple samples. For latent variable models, we focus on the case where the structure is a tree and we get samples from the leaves, which is a common scenario in phylogenetics. Assuming the model is Gaussian, we analyze the behavior of the Expectation-Maximization (EM) algorithm, a popular heuristic for latent variable models. We show that for trees with a single latent node, EM converges to the true model and for general tree topologies, the only stationary point in the interior of the domain is the true model. We then shift our focus to discrete models and study latent tree Ising models, for which we provide polynomial time algorithms for learning the distribution of leaves in TV distance. In supervised learning, we observe a sequence of feature-label pairs and our task is to learn the predictive relationship between the features and the labels. Here, this relationship could be confounded by the presence of dependencies among labels. We formulate this question as a regression problem, where the labels of the units follow the joint distribution of an Ising model with an unknown strength parameter and external fields that are determined by the regression function. We characterize the minimax optimal rate of estimation for the various parameters and provide an efficient algorithm that achieves it. Interestingly, it might not be possible to estimate all the parameters in some cases. In counterfactual inference, we focus on the design of network experiments, where the treatment of a unit could affect the outcome of a neighboring unit in an underlying graph. Our goal is to estimate a general causal effect that can be defined as the average difference in outcomes for a unit under two different interventions. For an arbitrary such effect, we propose an experimental design, called the conflict graph design. For an unbiased estimator of that effect, we prove bounds on its variance that yield the best known rates of estimation for various effects studied in the literature, such as the average direct effect and the total effect, but also provide estimation rates for effects that have received less attention from the perspective of experimental design.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hardening Trusted Execution Environments Against Microarchitectural Side-Channel Attacks: A Constructive Approach</title>
<link href="https://hdl.handle.net/1721.1/164044" rel="alternate"/>
<author>
<name>Dréan, Jules Guillaume Jacques Bénony D</name>
</author>
<id>https://hdl.handle.net/1721.1/164044</id>
<updated>2025-11-26T03:03:06Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Hardening Trusted Execution Environments Against Microarchitectural Side-Channel Attacks: A Constructive Approach
Dréan, Jules Guillaume Jacques Bénony D
Trusted Execution Environments (TEEs) [1–5] promised to enable secure computation even in the presence of privileged adversaries by providing hardware-enforced isolation. However, the discovery of microarchitectural side-channel and transient execution attacks [6–10] has severely undermined these security guarantees. These attacks exploit shared hardware resources and speculative execution to leak sensitive information across security boundaries, effectively bypassing the architectural isolation enforced by TEEs. The widespread impact of these vulnerabilities is evidenced by more than 43 published attacks [11] targeting commercial TEE platforms including Intel SGX, AMD-SEV, and ARM TrustZone. Existing approaches to defend against these attacks face significant limitations. Hardware-based solutions [12–14] often require complex processor modifications with significant hardware overhead. Replacing trusted hardware with cryptographic approaches incurs prohibitive performance overheads [15]. Meanwhile, formal verification methods struggle to scale to realistic code base sizes and often fail to capture subtle microarchitectural behaviors [16–18]. This thesis proposes a constructive approach to TEE security and demonstrates that practical defenses against microarchitectural attacks are achievable through careful system design. Rather than relying only on models and simulations, we focus on constructing systems that are secure by design. Our work is concretely realized through the design, implementation, and evaluation of two novel platforms: First, we present Citadel, a TEE platform that enables secure shared memory while providing precise guarantees against microarchitectural side-channel attacks. Citadel introduces relaxed microarchitectural isolation (RMI), a novel security property that allows programs to share memory while restricting information leakage to that of a non-speculative execution. To achieve RMI, Citadel combines hardware-enforced microarchitectural isolation with two simple mechanisms for controlled speculation: SpecSafe, which prevents speculative shared-memory accesses entirely, and Burst mode, which enables better performance through constrained speculation on small code snippets. Through a fully functional FPGA prototype, we demonstrate that Citadel can run real-world applications including cryptographic libraries and private ML inference with less than 5% overhead while maintaining strong security guarantees. Second, we develop Argos, an “integrity-only” TEE specifically designed for verifiable fully homomorphic encryption, that enables the deployment of FHE schemes in real-world settings where malicious security is required. We show that by carefully constraining the attack surface and employing simple hardware mechanisms, we can achieve complete security against microarchitectural attacks. Argos introduces a simplified transcript-based attestation scheme that only requires one signature per FHE computation, amortizing the cost of relying on a physical TPM to microarchitecturally isolate secrets. Argos can be used to not only enforce circuit-level integrity of FHE schemes but can also be extended to support more complex FHE-based applications that take (potentially poisoned) input from the (malicious) circuit evaluator. Argos is compatible with commodity hardware and only incurs minimal performance overhead with an average of 3% overhead for FHE evaluation and 8% overhead for complex protocols. Through these systems, we show that effective defenses can be built against microarchitectural side channel and transient execution attacks. Our constructive approach yields practical systems that are secure by design while maintaining efficiency and usability. This thesis opens new possibilities for the deployment of trusted hardware by demonstrating concrete paths toward robust microarchitectural security.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Steering Robots with Inference-Time Interactions</title>
<link href="https://hdl.handle.net/1721.1/164043" rel="alternate"/>
<author>
<name>Wang, Yanwei</name>
</author>
<id>https://hdl.handle.net/1721.1/164043</id>
<updated>2025-11-26T03:03:48Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Steering Robots with Inference-Time Interactions
Wang, Yanwei
Imitation learning has driven the development of generalist policies capable of autonomously solving multiple tasks. However, when a pretrained policy makes errors during deployment, there are limited mechanisms for users to correct its behavior. While collecting additional data for finetuning can address such issues, doing so for each downstream use case is inefficient at deployment. My research proposes an alternative: keeping pretrained policies frozen as a fixed skill repertoire while allowing user interactions to guide behavior generation toward user preferences at inference time. By making pretrained policies steerable, users can help correct policy errors when the model struggles to generalize—without needing to finetune the policy. Specifically, I propose (1) inference-time steering, which leverages user interactions to switch between discrete skills, and (2) task and motion imitation, which enables user interactions to edit continuous motions while satisfying task constraints defined by discrete symbolic plans. These frameworks correct misaligned policy predictions without requiring additional training, maximizing the utility of pretrained models while achieving inference-time user objectives.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Advancing Deep Learning Efficiency: From Specialized Co-Design to Automated Generation</title>
<link href="https://hdl.handle.net/1721.1/164042" rel="alternate"/>
<author>
<name>Lin, Yujun</name>
</author>
<id>https://hdl.handle.net/1721.1/164042</id>
<updated>2025-11-26T03:03:34Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Advancing Deep Learning Efficiency: From Specialized Co-Design to Automated Generation
Lin, Yujun
The explosive growth of artificial intelligence (AI) technologies, particularly large-scale deep learning models such as large language models and diffusion models, has intensified the demand for efficient full-stack inference solutions that effectively balance performance and costs. This work will present a comprehensive exploration into the algorithm-system co-optimization, hardware design specialization and automation for scalable AI deployment. First, we begin with algorithmic optimization for large-scale models, including large language models and diffusion models, developing inference libraries that leverage quantization to boost the performance of generative AIs on existing GPU platforms. Next, we design specialized hardware accelerators for domain-specific applications, specifically point cloud understanding, emphasizing efficiency improvements through the exploitation of data sparsity. Finally, we open up the hardware design space beyond template-based sizing, and progress into the automated learning-based co-design of neural network and hardware architectures, maximizing their synergy with a full-stack joint optimization. We then introduce an automated framework for spatial accelerator generation, transforming high-level mappings into custom hardware designs that support scalable deployment. Together, these contributions advance AI inference efficiency by bridging the gap between advanced computational requirements and hardware capabilities, between theoretical potential and practical solutions, and between design cost and effectiveness.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Learning Theoretic Foundations for Understanding Quantum Systems</title>
<link href="https://hdl.handle.net/1721.1/164041" rel="alternate"/>
<author>
<name>Liu, Allen</name>
</author>
<id>https://hdl.handle.net/1721.1/164041</id>
<updated>2025-11-26T03:03:55Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Learning Theoretic Foundations for Understanding Quantum Systems
Liu, Allen
Understanding and harnessing the power of quantum systems has the potential to transform many domains in science and technology. However, before we can achieve these aspirations, we must first build a better understanding of how quantum systems fundamentally behave. In this thesis, we approach this question through the lens of learning theory to develop new paradigms for learning about quantum systems and understanding their structural properties. We deliver several surprising results, upending previous beliefs about even fundamental laws and giving provably efficient algorithms for learning about quantum systems in settings previously conjectured to be intractable. Typically in quantum many-body systems, the particles in the system interact locally with respect to some geometry as described by a local Hamiltonian. Two key questions are first, understanding equilibrium properties of a system with a given Hamiltonian and second, recovering the Hamiltonian from measurements of the properties of the system. For the first, we prove a universal law that there is a sudden death of entanglement, at a critical temperature depending only on the geometry but not on the system size. For the second, we give the first efficient algorithm for recovering the Hamiltonian at any temperature, breaking a conjectured barrier at low temperatures. Beyond systems with local interactions, we also consider learning and testing properties of general quantum states, focusing on the interplay between statistical complexity and near-term quantum device constraints, only allowing for entangled measurements over a limited number of copies of the state. We characterize the optimal rates for learning and testing with single-copy measurements and for multi-copy measurements in many relevant near-term regimes.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Domain Wall Based Magnonics in Iron Garnet</title>
<link href="https://hdl.handle.net/1721.1/164040" rel="alternate"/>
<author>
<name>Gross, Miela J.</name>
</author>
<id>https://hdl.handle.net/1721.1/164040</id>
<updated>2025-11-26T03:03:43Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Domain Wall Based Magnonics in Iron Garnet
Gross, Miela J.
Magnonic devices leverage magnons, quantized spin waves, as the mechanism to process and transfer information. In materials with low Gilbert damping, these spin wave-based systems enable ultra-fast operation while eliminating thermal heating and leakage currents inherent to conventional electron-based microelectronics. To maximize energy efficiency and processing speed, materials like iron garnets, ferrimagnetic insulators with tunable magnetic properties, are essential. Key magnetic parameters, including saturation magnetization, perpendicular magnetic anisotropy, coercivity, and Gilbert damping, can be tailored through elemental substitution or strain engineering in thin films. Furthermore, relativistic domain wall velocities reported in yttrium iron garnet (YIG), bismuth substituted YIG, and thulium iron garnet lay the foundations for high-speed operation. These unique attributes position garnets as ideal materials for the development of magnonic devices that integrate efficiency, speed, and versatility. This thesis presents my research on integrating thin film garnets into a domain wall based magnonic devices. It begins by exploring the magnetic characterization of thin film iron garnets, including the growth process, temperature dependent magnetic behavior, and tunable magnetic anisotropy. Next, we report on magnonics within the garnet, focusing on the interactions between spin waves and domain walls. Finally, we demonstrate a write mechanism for a magnonic device driven by spin wave-induced domain wall motion, providing detailed characterization of the device behavior and performance. These results underscore the potential of iron garnets for magnonic-based device applications and offer insights into the efficiency of write mechanism, paving the way for energy-efficient high-speed spintronic technologies.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mitigating Inhomogeneity in High-Field MRI Excitations: Arbitrary Waveform Optimization and Multiphoton Parallel Transmission (MP-pTx)</title>
<link href="https://hdl.handle.net/1721.1/164039" rel="alternate"/>
<author>
<name>Drago, John M.</name>
</author>
<id>https://hdl.handle.net/1721.1/164039</id>
<updated>2025-11-26T03:03:22Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Mitigating Inhomogeneity in High-Field MRI Excitations: Arbitrary Waveform Optimization and Multiphoton Parallel Transmission (MP-pTx)
Drago, John M.
High-field magnetic resonance imaging (MRI) using a standard volume coil results in a spatially varying flip angle across the body, which renders images difficult to clinically interpret. This arises from the complex interactions of electromagnetic fields from current-carrying elements surrounding the imaging region. Parallel transmission (pTx) mitigates this issue by employing multiple high-power, independently controlled transmit elements for more precise excitation control. However, since the wavelength of the applied radio waves is shortened in tissue, the effect becomes highly dependent on the patient’s anatomy. As a result, optimization must be performed on a patient-by-patient basis, and methods that attempt full control of these independent waveforms are too computationally intensive to execute during the limited examination time. Additionally, the high-field excitations create complex electric field distributions that require control and careful monitoring to avoid excessive tissue power deposition (and ultimately heating), quantified as the specific absorption rate (SAR). To address these challenges, we introduce a method for optimizing patient-specific pulses using a global waveform (Ritz) approach, enabling rapid, in-scanner optimization. While pTx effectively addresses flip angle inhomogeneity, it remains costly and introduces challenges in SAR management. We address the SAR management and cost problems of pTx by introducing and characterizing the MP-pTx method, which leverages the multiphoton phenomenon to improve homogeneity using a standard volume coil supplemented with low-frequency (kilohertz) parallel channels. MP-pTx reduces costs and simplifies SAR management by shifting the parallel irradiation to low-cost, lowSAR shim array channels. These channels supplement an off-resonant excitation from a conventional birdcage coil with an oscillating, z-directed field that satisfies the resonance condition for spin state transitions.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Generative Latent Motion Planning and Reinforcement Learning for Legged Locomotion</title>
<link href="https://hdl.handle.net/1721.1/164038" rel="alternate"/>
<author>
<name>Miller, Adam Joseph</name>
</author>
<id>https://hdl.handle.net/1721.1/164038</id>
<updated>2025-11-26T03:03:52Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Generative Latent Motion Planning and Reinforcement Learning for Legged Locomotion
Miller, Adam Joseph
In recent years, reinforcement learning has demonstrated its promise as a powerful tool for developing innovative and advanced control systems for legged robots. The method’s robustness, versatility, and generality have made it a prime candidate for future robotic systems deployed in the real world. Through the development of more advanced machine learning algorithms and more reliable and efficient physics simulators, reinforcement learning continues to improve and enable new, dynamic, and agile capabilities. While the results are often impressive and the tools relatively beginner-friendly, there remain impediments to scalable and reliable progress. Poor reward function scaling, challenges balancing exploration versus exploitation, and misalignment from the engineer’s intent are roadblocks to better performance. To get beyond these limitations, new tools and frameworks are necessary. In this work, I present novel methods to address these challenges and extend the capabilities of reinforcement learning on robot hardware. Through the quantification of the distributional sim-to-real gap, simulation model optimization for hardware matching, latent space motion sequence planning, and latent style training, I demonstrate never-before-seen performance on legged hardware.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Learning from Weak Supervision: Theory, Methods, and Applications</title>
<link href="https://hdl.handle.net/1721.1/164037" rel="alternate"/>
<author>
<name>Lang, Hunter</name>
</author>
<id>https://hdl.handle.net/1721.1/164037</id>
<updated>2025-11-26T03:03:36Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Learning from Weak Supervision: Theory, Methods, and Applications
Lang, Hunter
The growing demand for high-quality labeled data to train machine learning models has driven widespread adoption of weak supervision and synthetic data methods, which use automated models instead of humans for annotation. Large language models (LLMs) have further accelerated this trend because their zero- and few-shot classification performance enables them to serve as effective “synthetic annotators” for various tasks. In practice, the data generated by these weak annotators is imperfect, but it enables the training of strong models. However, theoretical understanding of why training one model on the outputs of another leads to strong performance remains limited, especially when the annotator model exhibits suboptimal performance on the target task. In this thesis, I develop a theoretical framework for learning from weak supervision that captures the key aspects of the problem better than existing approaches in the crowdsourcing and learning-with-noisy-label literature. This framework establishes structural conditions that explain when and why weak supervision can reliably train strong models. Building on these theoretical results, the second part of the thesis introduces methods to improve how models learn from weak supervision and applies these methods to low-labeled-data settings.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multi-fidelity Optimal Trajectory Generation: Optimal Experiment Design for Robot Learning</title>
<link href="https://hdl.handle.net/1721.1/164036" rel="alternate"/>
<author>
<name>Ryou, Gilhyun</name>
</author>
<id>https://hdl.handle.net/1721.1/164036</id>
<updated>2025-11-26T03:03:10Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">Multi-fidelity Optimal Trajectory Generation: Optimal Experiment Design for Robot Learning
Ryou, Gilhyun
Data-driven methods have significantly advanced robot learning, yet their direct application to real-world robots remains challenging, particularly under extreme conditions. This challenge is especially pronounced for highly maneuverable vehicles like quadrotor aircraft, which often operate in scenarios requiring rapid maneuvering, such as racing, defense systems, or safety-critical obstacle avoidance. In such extreme conditions, real-world constraints like control delays, state estimation errors, and battery voltage fluctuations often compromise trajectory reliability, even when conforming to ideal dynamics. However, the typical data-driven methods are usually developed in simulated environments. Consequently, the transition to real-world dynamics requires extensive fine-tuning, which can be risky, as perfect training in simulations does not guarantee safe transitions to real-world dynamics. This thesis employs methods from optimal experiment design to address these challenges. By quantifying uncertainty and maximizing information gain, the approach aims to safely and efficiently design the real-world experiments required for accurate constraint modeling. In the first chapter, we present a multi-fidelity Bayesian optimization method that searches for time-optimal speed profiles for quadrotor aircraft, effectively balancing numerical simulations with real-world flight experiments. The second chapter extends the optimal experiment design method to a high-dimensional online planning problem through integration with reinforcement learning. The proposed algorithms, trained and validated through real-world flight experiments, significantly outperform baseline methods in trajectory time and computational efficiency. Additionally, these algorithms have been adapted to various planning problems, including fixed-wing aircraft planning, cooperative multi-drone systems, and energy-efficient trajectory generation.
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Efficient Systems for Large-Scale Graph Representation Learning</title>
<link href="https://hdl.handle.net/1721.1/164035" rel="alternate"/>
<author>
<name>Huang, Tianhao</name>
</author>
<id>https://hdl.handle.net/1721.1/164035</id>
<updated>2025-11-26T03:03:39Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Efficient Systems for Large-Scale Graph Representation Learning
Huang, Tianhao
Graph representation learning has gained significant traction in critical domains including finance, social networks, and transportation systems due to its successful application to graphstructured data. Graph neural networks (GNNs), which integrate the power of deep learning with graph structures, have emerged as the leading methods in this field, delivering superior performance across diverse graph related tasks. However, training graph neural networks on large-scale datasets encounters scalability challenges on current system architectures. First, the sparse, non-localized structures of real-world graphs lead to inefficiencies in data sampling and movement. This characteristic heavily stresses system input/output (I/O), particularly burdening the peripheral buses during the sampling phase of GNN training. Second, the suboptimal mapping of training procedure to GPU kernels leads to compute inefficiencies, including substantial kernel orchestration overhead and redundant computations. Addressing these challenges requires a comprehensive, full-stack optimization approach that fully leverages hardware capabilities. This thesis presents two complementary works to achieve the goal. The first work, Hanoi, unblocks the data loading bottleneck in out-of-core GNN training by co-designing the sampling algorithms to align with the hierarchical memory organization of commodity hardware. Hanoi drastically reduces I/O traffic to external storage, delivering up to 4.2× speedup over strong baselines with negligible impacts on the model quality. Notably, Hanoi is able to obtain competitive performance close to in-memory training with only a fraction of memory requirements. Building on this foundation, the second work, Joestar, introduces a unified framework for optimized GNN training on GPUs. Joestar adapts the multistage sampling approach from Hanoi to in-memory training which frees CPUs from heavy data loading workloads. Joestar also identifies novel kernel fusion opportunities and formulates better execution schedules by jointly considering the sampling and compute stages. Combined with compiler infrastructure in PyTorch, Joestar achieves state-of-the-art GNN training throughputs for billion-edge graph datasets on a single GPU.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Generalizable Long-Horizon Robotic Manipulation under&#13;
Uncertainty and Partial Observability</title>
<link href="https://hdl.handle.net/1721.1/164034" rel="alternate"/>
<author>
<name>Curtis, Aidan</name>
</author>
<id>https://hdl.handle.net/1721.1/164034</id>
<updated>2025-11-26T03:03:25Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Generalizable Long-Horizon Robotic Manipulation under&#13;
Uncertainty and Partial Observability
Curtis, Aidan
A central goal in embodied artificial intelligence is to enable autonomous agents to accomplish complex, long-horizon tasks in novel, partially observable environments. In these scenarios, agents must effectively reason about uncertainty, generalize from limited experiences, and proactively plan actions to acquire missing information. This thesis tackles these core challenges by developing and evaluating novel methods specifically designed for partially observable contexts. The first part of this thesis introduces an enhanced heuristicguided planning technique that increases search efficiency in sparse-reward domains with significant uncertainty. Next, we investigate how symbolic reasoning can be integrated into the decision-making framework, accelerating search through the use of temporal and belief-space abstractions. Next, we propose a method for sequencing low-level reinforcement learning skills alongside information gathering actions, enabling increased task complexity and robustness in real-world tasks. Lastly, we show how large language models may be leveraged for few-shot model learning, allowing agents to rapidly adapt and generalize to new scenarios. The methods presented in this thesis advance the state-of-the-art in embodied AI by enabling robots to better handle uncertainty and incomplete information, ultimately paving the way for more capable, exploratory, and risk-aware autonomous systems.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Graph-based Vector Search Algorithms for Retrieval-Augmented AI Systems</title>
<link href="https://hdl.handle.net/1721.1/164033" rel="alternate"/>
<author>
<name>Zhang, Ziyu</name>
</author>
<id>https://hdl.handle.net/1721.1/164033</id>
<updated>2025-11-26T03:06:31Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Graph-based Vector Search Algorithms for Retrieval-Augmented AI Systems
Zhang, Ziyu
The recent advancement of large language models (LLMs) and large multimodal models (LMMs) greatly enhances the capabilities of AI systems such as recommendation systems and coding assistants, making them more practical for real-world deployment. However, these models cannot directly interact with large volumes of data in a knowledge corpus during inference/task time due to inherent architectural limits and cost concerns. Encoding data into vector embeddings and leveraging approximate nearest neighbor search (ANNS) have thus become an important data processing primitive in AI systems following the introduction of retrievel-augmented generation (RAG). However, the complexity of tasks these AI systems aim to solve introduces challenges for existing ANNS algorithms. I developed methods to expand existing ANNS algorithms to address two such challenges: freshness and heterogeneity in the data.&#13;
&#13;
Graph-based ANNS algorithms have been proven to have superb cost versus approximation quality trade-off yet follow a simple intuition of best-first search. I focus on adapting graph-based ANNS algorithms to two settings featuring emerging challenges. (1) Data is updated constantly. Existing algorithms are inefficient under deletions and not robust against different orderings in the workload. I propose methods addressing these problems and developed an algorithm supporting updates effectively and efficiently based on Vamana, a state-of-the-art graph-based ANNS algorithm. (2) Data is heterogeneous in format, modality, and how they relate to a query, making the similarity difficult to capture by the canonical ANNS definition. I explore ways to model the similarity between heterogeneous sources and using graph-based ANNS approaches to perform semantic search in this setting. I test this approach under an end-to-end multimodal question-answering system developed in-house.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Adaptive Abstractions for Robust Hierarchical Manipulation Planning</title>
<link href="https://hdl.handle.net/1721.1/164032" rel="alternate"/>
<author>
<name>Noseworthy, Michael S.</name>
</author>
<id>https://hdl.handle.net/1721.1/164032</id>
<updated>2025-11-26T03:03:38Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Adaptive Abstractions for Robust Hierarchical Manipulation Planning
Noseworthy, Michael S.
In this thesis, we address the problem of long-horizon robotic manipulation under partial observability. Tasks such as gearbox assembly or tidying a workstation involve many objects and necessitate a variety of manipulation capabilities. These long-horizon tasks are commonly addressed by hierarchical approaches, which introduce state and action abstractions to make planning tractable. However, our abstractions often rely on imperfect models of the world, which can lead to brittle execution. Furthermore, these abstractions depend on having accurate state information, which is often only noisily sensed, if sensed at all. For example, in the assembly domain, the pose of each part may only be known within a few millimeters, and a box’s mass distribution may be completely unsensed. To deploy robots outside of structured environments like the factory, they will need to be robust to model misspecification and partial observability. The central idea of this thesis is that we can develop adaptive abstractions to improve the robustness of hierarchical planning once the robot is deployed. Adaptive abstractions incorporate observations from the real world that are informative about misspecifications and partial observability, essentially allowing the planner to adapt to its deployment environment. We explore this idea by developing three types of models that enable this adaptivity at different levels of the abstraction hierarchy: plan feasibility models, adaptive samplers, and reactive control policies. In our first contribution, we consider adding adaptivity to a task and motion planning system at the task-planning level. We focus on a setup where the robot has access to a set of parameterized skills, but these skills are derived from imperfect models. To enable robust planning, we propose to autonomously learn skill feasibility models once the robot is deployed through a curious exploration phase. Critically, we propose a novel active learning framework to enable efficient learning without human intervention. We show that the resulting feasibility model leads to robust task performance on multiple downstream tasks in a stacking domain. Our second contribution looks at developing adaptive samplers that can incorporate information about object state that is typically unobserved (e.g., inertial and frictional properties). General-purpose belief representations can handle this partial observability, but online inference is computationally expensive. Instead, we propose to use an offline phase to learn an inference network that directly predicts a distribution over object properties that is consistent with the interaction history. We show that inference networks enable efficient adaptation in a grasping domain with heavy objects. Our final contribution focuses on learning adaptive controllers such that robustness is handled at the lowest level of the abstraction. We consider precise contact-rich manipulation tasks that are sensitive to pose estimation errors. To overcome noisy poses at the control level, explorative contact is necessary, but unintended forces can lead to catastrophic outcomes such as part slippage or damage. We propose to use simulation in an offline phase to train reactive force-aware policies. The policies are trained to overcome pose uncertainty while using force-sensing to adaptively limit excessive forces. The result is robust real-world performance on the multistage assembly of a planetary gearbox system, which includes insertion, gear-meshing, and nut-threading tasks. In summary, adaptive abstractions can be used to increase the robustness of hierarchical manipulation planning, an important step in deploying robots outside of the lab or factory. Throughout the thesis, we validate the proposed approaches on the real robot in stacking and assembly domains.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Methods for Generalization Under Distribution Shift</title>
<link href="https://hdl.handle.net/1721.1/164031" rel="alternate"/>
<author>
<name>Netanyahu, Aviv</name>
</author>
<id>https://hdl.handle.net/1721.1/164031</id>
<updated>2025-11-26T03:03:12Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Methods for Generalization Under Distribution Shift
Netanyahu, Aviv
Machine learning systems have achieved remarkable performance in tasks where test data closely resembles the training distribution. However, real-world applications often require systems capable of handling more challenging situations -- specifically, adapting to new tasks and extrapolating to data points outside the distribution of the training set. The current paradigm for handling distribution shifts is collecting and training models on large datasets. This work offers two more principled frameworks that enable machine learning models to generalize effectively to out-of-distribution scenarios without sacrificing the power of modern overparameterized models.&#13;
&#13;
The first framework converts an out-of-support zero-shot generalization problem into an out-of-combination problem via a transductive reparameterization, which is possible under low-rank style conditions. We explore how this idea can be applied to domains like robotics, where the environment is changing, and materials and molecular design, where predicting properties of materials or molecules outside of known ranges is crucial to driving more efficient materials discovery.&#13;
&#13;
The second framework focuses on few-shot task learning, which involves agents learning new tasks from minimal data and applying them to new environments. We formulate the problem of few-shot task learning as Few-Shot Task Learning through Inverse Generative Modeling, which allows us to leverage the power of neural generative models pretrained on a set of base tasks. We adapt a method for efficient concept learning to few-shot task learning based on our formulation and rapidly learn new tasks with only a few examples, enabling task execution from autonomous driving to real-world robotic manipulation tasks in novel settings without the need for extensive retraining.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Scaling 3D Scene Perception via Probabilistic Programming</title>
<link href="https://hdl.handle.net/1721.1/164030" rel="alternate"/>
<author>
<name>Gothoskar, Nishad</name>
</author>
<id>https://hdl.handle.net/1721.1/164030</id>
<updated>2025-11-26T03:02:56Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Scaling 3D Scene Perception via Probabilistic Programming
Gothoskar, Nishad
Understanding and interpreting the 3D structure of the world is a central challenge in artificial intelligence. Our physical world is 3D, yet our AI systems often “see” that world through pixels and images. In order to build truly intelligent AI systems, we must go beyond pixels and images and build 3D vision systems that can build meaningful and useful 3D representations of the world. This is the problem of 3D scene perception. How do we transform raw visual input into 3D representations of the world? 3D scene perception has numerous applications from robotics to augmented reality. Despite the advances over the last decade, 3D perception remains a major bottleneck in real-world robotics applications. The challenge stems from the immense variability in real-world conditions, e.g. lighting, color, viewpoint, camera properties, object appearance, the incompleteness of visual data due to limited resolution, noise, and occlusions, and the approximations in our models of visual data. Developing more robust and generalizable 3D perception systems would be an important step towards more general-purpose robotics. In this thesis, we explore a probabilistic architecture for 3D perception based on structured generative models and probabilistic programs. We begin with 3DP3, the first iteration of our approach, which infers 3D scene graphs from real-world depth image data. 3DP3 demonstrates that our method could work on real-world benchmarks and correct commonsense errors from deep learning systems. Building on this foundation, we develop Bayes3D, which scaled up these ideas using a GPU-accelerated image likelihood and generative model alongside a parallel coarse-to-fine inference algorithm. Next, we explore two approaches for incorporating RGB image data into generative 3D graphics programs, expanding their applicability. We then introduce DurableVS, which extends inverse-graphics techniques to model scenes involving a robot and multiple cameras, enabling precise control of a robot. Finally, we present Gen3D, which integrates all the key ideas from this thesis into a real-time 3D perception system that uses multi-resolution probabilistic models of 3D matter to enable real-time tracking that is competitive with vision transformers and 3D Gaussian splatting, state-of-the-art methods in computer vision and computer graphics.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Efficient Generative Models for Visual Synthesis</title>
<link href="https://hdl.handle.net/1721.1/164029" rel="alternate"/>
<author>
<name>Yin, Tianwei</name>
</author>
<id>https://hdl.handle.net/1721.1/164029</id>
<updated>2025-11-26T03:03:27Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Efficient Generative Models for Visual Synthesis
Yin, Tianwei
While current visual generative models produce high-quality outputs, they suffer from significant computational costs and latency, limiting their applicability in interactive settings. In this dissertation, we introduce a suite of techniques designed to enhance the efficiency of generative models for image and video synthesis. First, we propose distribution matching distillation, a method that enables the training of one- or few-step visual generators by distilling knowledge from computationally expensive yet highly capable diffusion models. Next, we develop improved distillation techniques that enhance robustness and scalability, culminating in a production-grade few-step image generator. This system is now deployed in widely used software, generating hundreds of millions of images annually. Finally, we extend our approach to video generation by adopting an autoregressive paradigm, significantly reducing latency and enabling fast interactive video generation and world simulation.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Characterization of pGaN-gate power HEMTs</title>
<link href="https://hdl.handle.net/1721.1/164028" rel="alternate"/>
<author>
<name>Yu, Yue</name>
</author>
<id>https://hdl.handle.net/1721.1/164028</id>
<updated>2025-11-26T03:06:35Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Characterization of pGaN-gate power HEMTs
Yu, Yue
This thesis presents a comprehensive study of p-GaN gate GaN High Electron Mobility Transistors (HEMTs) with a focus on understanding how fabrication process variations and gate structural designs impact key electrical performance metrics. Five industry-fabricated wafers, each processed with distinct etch depths, contact strategies, and p-GaN surface configurations, were characterized using a combination of DC and pulsed I–V measurements. Full-transistor modules were evaluated alongside specialized test structures to enable both system-level and localized analysis. DC measurements using the Keysight B1505A system revealed that more aggressive gate contact schemes improved ON-resistance and transconductance, but often at the cost of increased gate leakage and reduced threshold control. Pulsed-IV characterization with the Auriga AU4750 system uncovered dynamic Ron degradation behavior and charge trapping effects, especially under high drain bias conditions. Extracted time constants demonstrated process-dependent trends, with wafers retaining more of the p-GaN surface exhibiting slower charge detrapping and more severe transient effects. Specialized test structures provided additional insights into gate lateral conduction, sheet resistance, and contact asymmetry, reinforcing the connection between device layout, processing, and observed variability. These findings highlight critical trade-offs in the design and fabrication of p-GaN gate GaN HEMTs and offer design-aware strategies for optimizing performance and reliability.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Contactless Sleep and Physiological Monitoring Using Artificial Intelligence and Radio Waves</title>
<link href="https://hdl.handle.net/1721.1/164027" rel="alternate"/>
<author>
<name>He, Hao</name>
</author>
<id>https://hdl.handle.net/1721.1/164027</id>
<updated>2025-11-26T03:03:04Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Contactless Sleep and Physiological Monitoring Using Artificial Intelligence and Radio Waves
He, Hao
Remote monitoring of sleep and physiological signals is critical for tracking human health, managing diseases, and enabling early intervention. However, existing monitoring solutions face two major limitations: (1) they are often unsuitable for vulnerable populations—such as infants and seniors—and (2) most of them raise concerns about measurement accuracy. We propose a novel, contactless approach that addresses both challenges by combining advances in artificial intelligence (AI) and radio-frequency (RF) sensing. Our solution makes monitoring more comfortable, accessible, and affordable, while still delivering clinically meaningful insights. This thesis makes four fundamental contributions: First, we introduce a system that can extract high-fidelity breathing signals from ambient RF reflections, even in complex scenarios where multiple individuals are present, such as couples sharing a bed. Second, we develop an AI-based sleep monitoring framework that generates sleep hypnograms and detects respiratory events entirely without the need for on-body sensors. Third we develop AI models that infer critical biomarkers—such as blood oxygen saturation (SpO₂) and inflammation (C-reactive protein levels)—in a fully passive and non-intrusive manner. Finally, inspired by the success of large language models, we show that physiological signals can be represented and interpreted analogously to language. This insight enables effective translation between modalities (e.g., from respiration to EEG) and unlocks robust representation learning for downstream clinical tasks. Together, these contributions establish a new paradigm for remote sleep and physiological monitoring—one that is contactless, continuous, and passive. We validate our system on real world datasets and demonstrate its potential to fundamentally transform clinical care and home health monitoring.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The legacy of Rudolf Nieuwenhuys in perspective</title>
<link href="https://hdl.handle.net/1721.1/164026" rel="alternate"/>
<author>
<name>Pignatelli, Michele</name>
</author>
<author>
<name>Rockland, Kathleen S.</name>
</author>
<id>https://hdl.handle.net/1721.1/164026</id>
<updated>2025-11-26T03:10:59Z</updated>
<published>2025-11-24T00:00:00Z</published>
<summary type="text">The legacy of Rudolf Nieuwenhuys in perspective
Pignatelli, Michele; Rockland, Kathleen S.
Professor Nieuwenhuys is among the great neuroanatomists and a historical figure of the later 20th and early 21st centuries. His legacy is manifold. There is the tangible legacy of the multiple scientific volumes, at once physical and conceptual entities. There is the generational legacy of handed-on scientific and intellectual traditions, and there is the legacy of specific scientific directions. In this brief Commentary, we highlight just two examples of his scientific contributions.
</summary>
<dc:date>2025-11-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Some Advice on Sustainability: ‘I Would Never Get into a Business I Did Not Really Understand’</title>
<link href="https://hdl.handle.net/1721.1/164025" rel="alternate"/>
<author>
<name>Wright, Randall S.</name>
</author>
<id>https://hdl.handle.net/1721.1/164025</id>
<updated>2025-11-26T03:10:53Z</updated>
<published>2022-11-01T00:00:00Z</published>
<summary type="text">Some Advice on Sustainability: ‘I Would Never Get into a Business I Did Not Really Understand’
Wright, Randall S.
My father, Chester S. Wright, was a business executive. He was president of two manufacturing companies and a member of the board of directors of four others.&#13;
&#13;
As a young boy, I remember him coming home from work in a big, black Chrysler Imperial—a “company car”—fitted out with shining chromium bumpers and gleaming radiator grill. After a wonderful home-cooked dinner my mother always made for my father, my two sisters, and me, he and I would head out in the Imperial to Gray’s Drug Store so he could buy House of Windsor cigars, and we could pick up the latest copies of Popular Mechanics, Popular Science, and Mechanix Illustrated.
</summary>
<dc:date>2022-11-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The 5-methylcytosine DNA glycosylase ROS1 prevents paternal genome hypermethylation in Arabidopsis endosperm</title>
<link href="https://hdl.handle.net/1721.1/164024" rel="alternate"/>
<author>
<name>Hemenway, Elizabeth A.</name>
</author>
<author>
<name>Gehring, Mary</name>
</author>
<id>https://hdl.handle.net/1721.1/164024</id>
<updated>2025-11-26T03:10:22Z</updated>
<published>2025-09-18T00:00:00Z</published>
<summary type="text">The 5-methylcytosine DNA glycosylase ROS1 prevents paternal genome hypermethylation in Arabidopsis endosperm
Hemenway, Elizabeth A.; Gehring, Mary
Background DNA methylation patterning is a consequence of opposing activities of DNA methyltransferases and DNA demethylases. In many plant and animal species, reproduction is a period of significant epigenome lability. In flowering plants, two distinct female gametes, the egg cell and the central cell, are fertilized to produce the embryo and the endosperm of the seed. The endosperm is an unusual tissue, exemplified by triploidy and reduced DNA methylation. In Arabidopsis thaliana, a 5-methylcytosine DNA glycosylase, DME, demethylates regions of the central cell genome, leading to methylation differences between maternally- and paternally-inherited endosperm genomes after fertilization. Expression of DME in the central cell is required for gene imprinting, or parent-of-origin specific gene expression, in endosperm. DME is part of a four member gene family in Arabidopsis that includes ROS1, DML2, and DML3. It is unknown whether any of the other DNA glycosylases are required for endosperm methylation patterning. Results Using whole-genome methylation profiling, we identify ROS1 target regions in the endosperm. We show that ROS1 prevents hypermethylation of paternally-inherited alleles in the endosperm at regions that lack maternal or paternal allele methylation in wild-type endosperm. Additionally, we demonstrate that at many ROS1 target regions the maternal alleles are demethylated by DME. Conclusions ROS1 promotes epigenetic symmetry between parental genomes in the endosperm by preventing CG methylation gain on the paternal genome. We conclude that ROS1 and DME act in a parent-of-origin-specific manner at shared endosperm targets, and consider possible implications for the evolution of imprinting mechanisms.
</summary>
<dc:date>2025-09-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Players chatter and dice clatter: exploring sonic power relations in posthuman game-based learning ecologies</title>
<link href="https://hdl.handle.net/1721.1/164023" rel="alternate"/>
<author>
<name>Woods, Peter J</name>
</author>
<author>
<name>Jones, Karis</name>
</author>
<id>https://hdl.handle.net/1721.1/164023</id>
<updated>2025-11-26T03:10:57Z</updated>
<published>2022-10-28T00:00:00Z</published>
<summary type="text">Players chatter and dice clatter: exploring sonic power relations in posthuman game-based learning ecologies
Woods, Peter J; Jones, Karis
Responding to both recent interest in sound within qualitative education research and sound studies literature that conceptualizes sound as a posthuman technology, we use this paper to explore the following research questions: How does sound both enact and unveil posthuman learning ecologies? And how can education scholars engage sound within posthuman research? Through a posthuman framework, we position noise as an analytical tool for exploring and unveiling more-than-human relations. We then draw parallels between posthuman qualitative research into sound (via noise) and the ideological foundation of experimental music, a musical tradition deeply invested in working with sound as an agentic actor. Within this alignment, we propose using graphic scores to transcribe sonic data without reinscribing humanist research aims. To illustrate, we provide a micro-analysis of preservice teachers engaged in a role-playing game activity and uncover the ways sound asserts its agency within learning ecologies.
</summary>
<dc:date>2022-10-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Palonosetron, a 5-HT3 Receptor Antagonist, Induces G1 Cell Cycle Arrest and Autophagy in Gastric Cancer Cells</title>
<link href="https://hdl.handle.net/1721.1/164022" rel="alternate"/>
<author>
<name>Yoo, Young Chul</name>
</author>
<author>
<name>Lin, Lin</name>
</author>
<author>
<name>Lee, Sihak</name>
</author>
<author>
<name>Shin, Yeeun Rachel</name>
</author>
<author>
<name>Oh, Ju Eun</name>
</author>
<author>
<name>Kim, Na Young</name>
</author>
<id>https://hdl.handle.net/1721.1/164022</id>
<updated>2025-11-26T03:10:27Z</updated>
<published>2025-10-15T00:00:00Z</published>
<summary type="text">Palonosetron, a 5-HT3 Receptor Antagonist, Induces G1 Cell Cycle Arrest and Autophagy in Gastric Cancer Cells
Yoo, Young Chul; Lin, Lin; Lee, Sihak; Shin, Yeeun Rachel; Oh, Ju Eun; Kim, Na Young
Serotonin or 5-hydroxytryptamine (5-HT) has been implicated in promoting cancer cell growth by acting on 5-HT receptors, such as 5-HT1 and 5-HT2 receptors. However, the role of 5-HT3 receptor antagonists in gastric cancer cell lines remains unclear. This study aimed to evaluate the effect of 5-HT3 receptor antagonists (ondansetron, palonosetron, and ramosetron) on cancer cell growth using AGS and MKN-1 cell lines, as well as the xenograft mouse model. All the three antagonists inhibited cell proliferation, migration, and colony formation in AGS cells. Specifically, palonosetron induced G1 cell cycle arrest, autophagy, and phosphorylation of GSK3β, along with increased expression of p27, p53, and LC3B. In vivo studies demonstrated that palonosetron reduced tumor growth and modulated pro-inflammatory cytokines—tumor necrosis factor alpha, interleukin 6, and interleukin 1β. These findings suggest that 5-HT3 receptor antagonists, especially palonosetron, exert anti-tumor effects in gastric cancer through G1 cell cycle regulation and immunomodulation. The results position palonosetron as a promising lead for further preclinical development in gastric cancer.
</summary>
<dc:date>2025-10-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>50 years of nanomechanics: Scale-bridging mechanistic insights through the looking glass</title>
<link href="https://hdl.handle.net/1721.1/164021" rel="alternate"/>
<author>
<name>Han, Seung M.</name>
</author>
<author>
<name>Gianola, Daniel S.</name>
</author>
<author>
<name>Portela, Carlos M.</name>
</author>
<author>
<name>Sebastiani, Marco</name>
</author>
<author>
<name>Kirchlechner, Christoph</name>
</author>
<id>https://hdl.handle.net/1721.1/164021</id>
<updated>2025-11-26T03:10:47Z</updated>
<published>2025-11-17T00:00:00Z</published>
<summary type="text">50 years of nanomechanics: Scale-bridging mechanistic insights through the looking glass
Han, Seung M.; Gianola, Daniel S.; Portela, Carlos M.; Sebastiani, Marco; Kirchlechner, Christoph
Historical and recent advances in the field of nanomechanics, ranging from the early development of nanoindentation to recent advances in artificial intelligence- and machine learning-based characterization and modeling are covered in this article. Early advances were motivated by thin-film mechanics challenges driven by the microelectronics industry. In the ensuing years, different methodologies for probing mechanical properties at length scales relevant to a myriad of applications and materials systems have been developed, coupled with a variety of in situ testing methods that shed insights into new mechanisms. Built upon the knowledge base from nanomechanics, new mechanical metamaterials with otherwise unachievable material properties have been discovered, and new methods in testing and analyzing properties for extreme conditions have been recently reported. This article discusses the journey that the nanomechanics community has gone through over the past 50 years and shares the scale-bridging mechanistic insights through the looking glass.
</summary>
<dc:date>2025-11-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sustainable Synthesis of CoFe2O4/Fe2O3 Catalyst for Hydrogen Generation from Sodium Borohydride Hydrolysis</title>
<link href="https://hdl.handle.net/1721.1/164020" rel="alternate"/>
<author>
<name>Teixeira, Lucas Tonetti</name>
</author>
<author>
<name>Medeiros, Marcos</name>
</author>
<author>
<name>Liu, Liying</name>
</author>
<author>
<name>Park, Vinicius Novaes</name>
</author>
<author>
<name>Valente-Rodriguez, Célio</name>
</author>
<author>
<name>Letichevsky, Sonia</name>
</author>
<author>
<name>Fajardo, Humberto Vieira</name>
</author>
<author>
<name>de Siqueira, Rogério Navarro Correia</name>
</author>
<author>
<name>Maia da Costa, Marcelo Eduardo Huguenin</name>
</author>
<author>
<name>Botelho Junior, Amilton Barbosa</name>
</author>
<id>https://hdl.handle.net/1721.1/164020</id>
<updated>2025-11-26T03:10:55Z</updated>
<published>2025-10-01T00:00:00Z</published>
<summary type="text">Sustainable Synthesis of CoFe2O4/Fe2O3 Catalyst for Hydrogen Generation from Sodium Borohydride Hydrolysis
Teixeira, Lucas Tonetti; Medeiros, Marcos; Liu, Liying; Park, Vinicius Novaes; Valente-Rodriguez, Célio; Letichevsky, Sonia; Fajardo, Humberto Vieira; de Siqueira, Rogério Navarro Correia; Maia da Costa, Marcelo Eduardo Huguenin; Botelho Junior, Amilton Barbosa
Hydrogen has been explored as a greener alternative for greenhouse gas emissions reduction. Sodium borohydride (NaBH4) is a favorable hydrogen carrier due to its high hydrogen content, safe handling, and rapid hydrogen release. This work presents a novel synthesis of the catalyst CoFe2O4/Fe2O3 using nanocellulose fibers (TCNF) as reactive templates for metal adsorption and subsequent calcination. The resulting material was tested for H2 production from basic NaBH4 aqueous solutions (10–55 °C). The catalyst’s composition is 74.8 wt% CoFe2O4, 25 wt% Fe2O3, and 0.2 wt% Fe2(SO4)3 with agglomerated spheroidal particles (15–20 nm) and homogeneous Fe and Co distribution. The catalyst produced 1785 mL of H2 in 15 min at 25 °C (50 mg catalyst, 4.0% NaBH4, and 2.5 wt% NaOH), close to the stoichiometric maximum (2086 mL). The maximum H2 generation rate (HGR) reached 3.55 L min−1 gcat−1 at 40 °C. Activation energies were determined using empirical (38.4 ± 5.3 kJ mol−1) and Langmuir–Hinshelwood (L–H) models (42.2 ± 5.8 kJ mol−1), consistent with values for other Co-ferrite catalysts. Kinetic data fitted better to the L–H model, suggesting that boron complex adsorption precedes H2 evolution.
</summary>
<dc:date>2025-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>On the potential of microtubules for scalable quantum computation</title>
<link href="https://hdl.handle.net/1721.1/164019" rel="alternate"/>
<author>
<name>Mavromatos, Nick E.</name>
</author>
<author>
<name>Mershin, Andreas</name>
</author>
<author>
<name>Nanopoulos, Dimitri V.</name>
</author>
<id>https://hdl.handle.net/1721.1/164019</id>
<updated>2025-11-26T03:10:41Z</updated>
<published>2025-11-19T00:00:00Z</published>
<summary type="text">On the potential of microtubules for scalable quantum computation
Mavromatos, Nick E.; Mershin, Andreas; Nanopoulos, Dimitri V.
We examine the quantum coherence properties of tubulin heterodimers arranged into the protofilaments of cytoskeletal microtubules. In the physical model proposed by the authors, the microtubule interiors are treated as high-Q quantum electrodynamics (QED) cavities that can support decoherence-resistant entangled states under physiological conditions, with decoherence times of the order of O ( 10 - 6 )  s. We identify strong electric dipole interactions between tubulin dimers and ordered water dipole quanta within the microtuble interior as the mechanism responsible for the extended coherence times. Classical nonlinear (pseudospin) σ -models describing solitonic excitations are reinterpreted as emergent quantum-coherent—or possibly pointer—states, arising from incomplete collapse of dipole-aligned quantum states. These solitons mediate dissipation-free energy transfer along microtubule filaments. We discuss logic-gate-like behaviour facilitated by microtubule-associated proteins, and outline how such structures may enable scalable, ambient-temperature quantum computation, with the fundamental unit of information storage realized as a quDit encoded in the tubulin dipole state. We further describe a process akin to “decision-making” that emerges following an external stimulus, whereby optimal, energy-loss-free signal and information transport pathways are selected across the microtubular network. Finally, we propose experimental approaches—including Rabi-splitting spectroscopy and entangled surface plasmon probes—to validate the use of biomatter as a substrate for scalable quantum computation.
</summary>
<dc:date>2025-11-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Can Artificial Intelligence Improve the Appropriate Use and Decrease the Misuse of REBOA?</title>
<link href="https://hdl.handle.net/1721.1/164018" rel="alternate"/>
<author>
<name>Bokenkamp, Mary</name>
</author>
<author>
<name>Ma, Yu</name>
</author>
<author>
<name>Dorken-Gallastegi, Ander</name>
</author>
<author>
<name>Proaño-Zamudio, Jefferson A</name>
</author>
<author>
<name>Gebran, Anthony</name>
</author>
<author>
<name>Velmahos, George C</name>
</author>
<author>
<name>Bertsimas, Dimitris</name>
</author>
<author>
<name>Kaafarani, Haytham MA</name>
</author>
<id>https://hdl.handle.net/1721.1/164018</id>
<updated>2025-11-26T03:10:54Z</updated>
<published>2025-09-25T00:00:00Z</published>
<summary type="text">Can Artificial Intelligence Improve the Appropriate Use and Decrease the Misuse of REBOA?
Bokenkamp, Mary; Ma, Yu; Dorken-Gallastegi, Ander; Proaño-Zamudio, Jefferson A; Gebran, Anthony; Velmahos, George C; Bertsimas, Dimitris; Kaafarani, Haytham MA
Background: The use of resuscitative endovascular balloon occlusion of the aorta (REBOA) for control of noncompressible torso hemorrhage remains controversial. We aimed to utilize a novel and transparent/interpretable artificial intelligence (AI) method called Optimal Policy Trees (OPTs) to improve the appropriate use and decrease the misuse of REBOA in hemodynamically unstable blunt trauma patients. Methods: We trained and then validated OPTs that “prescribe” REBOA in a 50:50 split on all hemorrhagic shock blunt trauma patients in the 2010–2019 ACS-TQIP database based on rates of survival. Hemorrhagic shock was defined as a systolic blood pressure ≤90 on arrival or a transfusion requirement of ≥4 units of blood in the first 4 h of presentation. The expected 24 h mortality rate following OPT prescription was compared to the observed 24 h mortality rate in patients who were or were not treated with REBOA. Results: Out of 4.5 million patients, 100,615 were included, and 803 underwent REBOA. REBOA patients had a higher rate of pelvic fracture, femur fracture, hemothorax, pneumothorax, and thoracic aorta injury (p &lt; 0.001). The 24 h mortality rate for the REBOA vs. non-REBOA group was 47% vs. 21%, respectively (p &lt; 0.001). OPTs resulted in an 18% reduction in 24 h mortality for REBOA and a 0.8% reduction in non-REBOA patients. We specifically divert the misuse of REBOA by recommending against REBOA in cases where it leads to worse outcomes. Conclusions: This proof-of-concept study shows that interpretable AI models can improve mortality in unstable blunt trauma patients by optimizing the use and decreasing the misuse of REBOA. To date, these models have been used to predict outcomes, but their groundbreaking use will be in prescribing interventions and changing outcomes.
</summary>
<dc:date>2025-09-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ultra-High Resolution 9.4T Brain MRI Segmentation via a Newly Engineered Multi-Scale Residual Nested U-Net with Gated Attention</title>
<link href="https://hdl.handle.net/1721.1/164017" rel="alternate"/>
<author>
<name>Kalluvila, Aryan</name>
</author>
<author>
<name>Patel, Jay B.</name>
</author>
<author>
<name>Johnson, Jason M.</name>
</author>
<id>https://hdl.handle.net/1721.1/164017</id>
<updated>2025-11-26T03:10:29Z</updated>
<published>2025-09-24T00:00:00Z</published>
<summary type="text">Ultra-High Resolution 9.4T Brain MRI Segmentation via a Newly Engineered Multi-Scale Residual Nested U-Net with Gated Attention
Kalluvila, Aryan; Patel, Jay B.; Johnson, Jason M.
A 9.4T brain MRI is the highest resolution MRI scanner in the public market. It offers submillimeter brain imaging with exceptional anatomical detail, making it one of the most powerful tools for detecting subtle structural changes associated with neurological conditions. Current segmentation models are optimized for lower-field MRI (1.5T–3T), and they struggle to perform well on 9.4T data. In this study, we present the GA-MS-UNet++, the world’s first deep learning-based model specifically designed for 9.4T brain MRI segmentation. Our model integrates multi-scale residual blocks, gated skip connections, and spatial channel attention mechanisms to improve both local and global feature extraction. The model was trained and evaluated on 12 patients in the UltraCortex 9.4T dataset and benchmarked against four leading segmentation models (Attention U-Net, Nested U-Net, VDSR, and R2UNet). The GA-MS-UNet++ achieved a state-of-the-art performance across both evaluation sets. When tested against manual, radiologist-reviewed ground truth masks, the model achieved a Dice score of 0.93. On a separate test set using SynthSeg-generated masks as the ground truth, the Dice score was 0.89. Across both evaluations, the model achieved an overall accuracy of 97.29%, precision of 90.02%, and recall of 94.00%. Statistical validation using the Wilcoxon signed-rank test (p &lt; 1 × 10−5) and Kruskal–Wallis test (H = 26,281.98, p &lt; 1 × 10−5) confirmed the significance of these results. Qualitative comparisons also showed a near-exact alignment with ground truth masks, particularly in areas such as the ventricles and gray–white matter interfaces. Volumetric validation further demonstrated a high correlation (R2 = 0.90) between the predicted and ground truth brain volumes. Despite the limited annotated data, the GA-MS-UNet++ maintained a strong performance and has the potential for clinical use. This algorithm represents the first publicly available segmentation model for 9.4T imaging, providing a powerful tool for high-resolution brain segmentation and driving progress in automated neuroimaging analysis.
</summary>
<dc:date>2025-09-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>De novo design of a two-step approach targeting Claudin-6 for enhanced drug delivery to solid tumors</title>
<link href="https://hdl.handle.net/1721.1/164016" rel="alternate"/>
<author>
<name>Yan, Jiayao</name>
</author>
<author>
<name>Zhong, Liqing</name>
</author>
<author>
<name>Chen, Xiaotong</name>
</author>
<author>
<name>Li, Lin</name>
</author>
<author>
<name>Liu, Fangcen</name>
</author>
<author>
<name>Lei, Lei</name>
</author>
<author>
<name>An, Mengchao</name>
</author>
<author>
<name>Wei, Xiao</name>
</author>
<author>
<name>Wang, Ying</name>
</author>
<author>
<name>Chen, Tianran</name>
</author>
<author>
<name>Guo, Jingyi</name>
</author>
<author>
<name>Shao, Jie</name>
</author>
<author>
<name>Yu, Xiaoxiao</name>
</author>
<author>
<name>Zhao, Yingjie</name>
</author>
<author>
<name>Li, Rutian</name>
</author>
<author>
<name>Liu, Qin</name>
</author>
<id>https://hdl.handle.net/1721.1/164016</id>
<updated>2025-11-26T03:10:50Z</updated>
<published>2025-11-20T00:00:00Z</published>
<summary type="text">De novo design of a two-step approach targeting Claudin-6 for enhanced drug delivery to solid tumors
Yan, Jiayao; Zhong, Liqing; Chen, Xiaotong; Li, Lin; Liu, Fangcen; Lei, Lei; An, Mengchao; Wei, Xiao; Wang, Ying; Chen, Tianran; Guo, Jingyi; Shao, Jie; Yu, Xiaoxiao; Zhao, Yingjie; Li, Rutian; Liu, Qin
Background Although antibody-conjugated drugs have achieved success in clinical practice for cancer treatment, challenges remain in developing a highly efficient drug delivery system with specific accumulation in tumors and reduction in side effects. With improved pharmacokinetics, strong covalent bonding and quick binding reactions, a pre-targeting approach via molecular pairs represents an attractive platform for two-step delivery system construction. Methods Bioinformatics and immunohistochemistry assays were performed to assess Claudin-6 (CLDN6) as a highly specific tumor target in solid tumors. A phage-displayed library was used to screen and optimize anti-CLDN6 designed ankyrin repeat proteins (DARPins), which were incorporated into a two-step delivery system based on SpyTag/SpyCatcher. Fluorescent staining, flow cytometry and near-infrared imaging were performed to assess the tumor-targeting ability and biodistribution of this delivery system. The cytotoxic drug, Monomethyl auristatin E (MMAE), was conjugated with the delivery system to evaluate its anti-tumor efficacy and safety profile. Results Anti-CLDN6 DARPins exhibited specific binding to CLDN6+ cancer cells with high affinity instead of negative cells in vitro, ex vivo and in vivo. The DARPins-based two-step delivery system improved background clearance with a high signal-to-noise ratio, enhancing the specific accumulation of payloads in tumors. The cytotoxic drug delivered via the two-step system appeared superior to the one-step approach in IC50, biodistribution, and tumor growth inhibition. Conclusions Our study presented the de novo design of a two-step drug delivery system targeting Claudin-6 with enhanced anti-tumor efficacy and improved biosafety. These findings highlighted the potential of this approach to enhance the efficacy of tumor-targeting therapies and reduce adverse effects, paving the way for more effective cancer treatments.
</summary>
<dc:date>2025-11-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>How Does AI Transform Cyber Risk Management?</title>
<link href="https://hdl.handle.net/1721.1/164015" rel="alternate"/>
<author>
<name>Zeijlemaker, Sander</name>
</author>
<author>
<name>Lemiesa, Yaphet K</name>
</author>
<author>
<name>Schröer, Saskia Laura</name>
</author>
<author>
<name>Abhishta, Abhishta</name>
</author>
<author>
<name>Siegel, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/164015</id>
<updated>2025-11-26T03:10:51Z</updated>
<published>2025-09-23T00:00:00Z</published>
<summary type="text">How Does AI Transform Cyber Risk Management?
Zeijlemaker, Sander; Lemiesa, Yaphet K; Schröer, Saskia Laura; Abhishta, Abhishta; Siegel, Michael
Digital transformation embeds smart cities, e-health, and Industry 4.0 into critical infrastructures, thereby increasing reliance on digital systems and exposure to cyber threats and boosting complexity and dependency. Research involving over 200 executives reveals that under rising complexity, only 15% of cyber risk investments are effective, leaving most organizations misaligned or vulnerable. In this context, the role of artificial intelligence (AI) in cybersecurity requires systemic scrutiny. This study analyzes how AI reshapes systemic structures in cyber risk management through a multi-method approach: literature review, expert workshops with practitioners and policymakers, and a structured kill chain analysis of the Colonial Pipeline attack. The findings reveal three new feedback loops: (1) deceptive defense structures that misdirect adversaries while protecting assets, (2) two-step success-to-success attacks that disable defenses before targeting infrastructure, and (3) autonomous proliferation when AI applications go rogue. These dynamics shift cyber risk from linear patterns to adaptive, compounding interactions. The principal conclusion is that AI both amplifies and mitigates systemic risk. The core recommendation is to institutionalize deception in security standards and address drifting AI-powered systems. Deliverables include validated systemic structures, policy options, and a foundation for creating future simulation models to support strategic cyber risk management investment.
</summary>
<dc:date>2025-09-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Flex-Route Transit for Smart Cities: A Reinforcement Learning Approach to Balance Ridership and Performance</title>
<link href="https://hdl.handle.net/1721.1/164014" rel="alternate"/>
<author>
<name>Rodriguez, Joseph</name>
</author>
<author>
<name>Koutsopoulos, Haris N.</name>
</author>
<author>
<name>Zhao, Jinhua</name>
</author>
<id>https://hdl.handle.net/1721.1/164014</id>
<updated>2025-11-26T03:10:31Z</updated>
<published>2025-09-16T00:00:00Z</published>
<summary type="text">Flex-Route Transit for Smart Cities: A Reinforcement Learning Approach to Balance Ridership and Performance
Rodriguez, Joseph; Koutsopoulos, Haris N.; Zhao, Jinhua
A major challenge for modern transit systems relying on traditional fixed-route designs is providing broad accessibility to users. Flex-route transit can enhance accessibility in low-density areas, since it combines the directness of fixed-route transit with the coverage of on-demand mobility. Although deviating for optional pickups can increase ridership and transit accessibility, it also deteriorates the service performance for fixed-route riders. To balance this inherent trade-off, this paper proposes a reinforcement learning approach for deviation decisions. The proposed model is used in a case study of a proposed flex-route service in the city of Boston. The performance on competing objectives is evaluated for reward configurations that adapt to peak and off-peak scenarios. The analysis shows a significant improvement of our method compared to a heuristic derived from industry practice as a baseline. To evaluate robustness, we assess performance across scenarios with varying demand compositions (fixed and requested riders). The results show that the method achieves greater improvements than the baseline in scenarios with increased request ridership, i.e., where decision-making is more complex. Our approach improves service performance under dynamic demand conditions and varying priorities, offering a valuable tool for smart cities to operate flex-route services.
</summary>
<dc:date>2025-09-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Search for a cH signal in the associated production of at least one charm quark with a Higgs boson in the diphoton decay channel in pp collisions at $$\sqrt{s}=13$$ TeV</title>
<link href="https://hdl.handle.net/1721.1/164013" rel="alternate"/>
<author>
<name>Chekhovsky, V.</name>
</author>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Makarenko, V.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Benato, L.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<id>https://hdl.handle.net/1721.1/164013</id>
<updated>2025-11-26T03:10:44Z</updated>
<published>2025-11-12T00:00:00Z</published>
<summary type="text">Search for a cH signal in the associated production of at least one charm quark with a Higgs boson in the diphoton decay channel in pp collisions at $$\sqrt{s}=13$$ TeV
Chekhovsky, V.; Hayrapetyan, A.; Makarenko, V.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Benato, L.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.
This paper presents the first search for a cH signal sensitive to the coupling of the charm quark (c) to the Higgs boson (H) in the associated production of at least one charm quark with a Higgs boson decaying to two photons. The results are based on a data set of proton-proton collisions at a center-of-mass energy of 13 TeV collected with the CMS experiment at the LHC, corresponding to an integrated luminosity of 138 fb−1. Assuming the standard model (SM) rates for all other Higgs boson production processes, the observed (expected) upper limit at 95% confidence level on the cH signal strength is 243 (355) times the SM prediction. Under the same assumption, the observed (expected) allowed interval on the Higgs boson to charm quark coupling modifier, κc, is |κc| &lt; 38.1 (|κc| &lt; 72.5) at 95% confidence level.
</summary>
<dc:date>2025-11-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Bunch of Gaps: Factors Behind Service Reliability in Chicago’s High-Frequency Transit Network</title>
<link href="https://hdl.handle.net/1721.1/164012" rel="alternate"/>
<author>
<name>Rodriguez, Joseph</name>
</author>
<author>
<name>Koutsopoulos, Haris N.</name>
</author>
<author>
<name>Zhao, Jinhua</name>
</author>
<id>https://hdl.handle.net/1721.1/164012</id>
<updated>2025-11-26T03:10:32Z</updated>
<published>2025-08-28T00:00:00Z</published>
<summary type="text">A Bunch of Gaps: Factors Behind Service Reliability in Chicago’s High-Frequency Transit Network
Rodriguez, Joseph; Koutsopoulos, Haris N.; Zhao, Jinhua
Frequent transit services in urban areas have the potential to increase their accessibility to transit-dependent riders and reduce congestion by attracting new ridership through a modal shift. However, bus services operating in mixed traffic face operational challenges that reduce reliability and hinder their attractiveness. The sources of unreliability can range from local-level conditions, like the road infrastructure, to higher-level decisions, like the service plan. For the effective planning of improvement strategies, both scales of analysis must be considered. This paper uses a novel modeling framework to understand reliability by analyzing the route and segment factors separately. The Chicago Transit Authority (CTA) bus network is used as a case study for the analysis. The data reflect the operational, demand, and urban conditions of 50 high-frequency bus routes. At the route level, we use the coefficient of headway variation as the dependent variable and diverse route characteristics as explanatory variables. The results indicate that the most significant contributors to the variability of headways are variability in schedules and dispatching at terminals. It is also found that driver experience impacts reliability and that east–west routes are more unreliable than north–south routes. At the segment level, we use data from trips involved in bunching and gaps. As the dependent variable, a novel measure is formulated to capture how quickly bunching or gaps are formed. The bunching and gap events are treated as separate regression models. Findings suggest that link and dwell time variability are the most significant contributors to gap and bunching formation. In terms of infrastructure, bus lane segments reduce gap formations, and left turns increase bunching and gap formations. The insights presented can inform improvements in service and transit infrastructure planning to improve transit level of service (LOS) and support the future of sustainable, smart cities.
</summary>
<dc:date>2025-08-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Oil Transport Simulation and Oil Consumption Prediction with a Physics-Based and Data-Driven Digital Twin Model for Internal Combustion Engines</title>
<link href="https://hdl.handle.net/1721.1/164011" rel="alternate"/>
<author>
<name>Zhong, Xinlin</name>
</author>
<author>
<name>Tian, Tian</name>
</author>
<id>https://hdl.handle.net/1721.1/164011</id>
<updated>2025-11-26T03:10:58Z</updated>
<published>2025-10-21T00:00:00Z</published>
<summary type="text">Oil Transport Simulation and Oil Consumption Prediction with a Physics-Based and Data-Driven Digital Twin Model for Internal Combustion Engines
Zhong, Xinlin; Tian, Tian
Lubrication oil consumption (LOC) is one of the major sources of emissions from internal combustion (IC) engines; yet, analyzing and predicting it through modeling is challenging due to its multi-physics nature, which spans different time and length scales. In this work, a digital twin model is developed to simulate oil transport in the piston ring pack of IC engines and predict the resulting oil consumption with all major physical mechanisms considered. Three main contributors to LOC, namely, top ring up-scraping, oil vaporization on the liner, and reverse gas flows through the top ring gap, are included in the model. It was found that their behaviors are heavily dependent on the arrangement of the piston ring gaps. Therefore, with the ring rotation behavior still not resolved, the current model can predict the LOC range of a given engine profile. Results show that the predicted range can well encapsulate the experimentally measured LOC value.
</summary>
<dc:date>2025-10-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>LSM and CPT</title>
<link href="https://hdl.handle.net/1721.1/164010" rel="alternate"/>
<author>
<name>Seiberg, Nathan</name>
</author>
<author>
<name>Shao, Shu-Heng</name>
</author>
<author>
<name>Zhang, Wucheng</name>
</author>
<id>https://hdl.handle.net/1721.1/164010</id>
<updated>2025-11-26T03:10:45Z</updated>
<published>2025-11-19T00:00:00Z</published>
<summary type="text">LSM and CPT
Seiberg, Nathan; Shao, Shu-Heng; Zhang, Wucheng
We study a number of 1+1d lattice models with anti-unitary symmetries that simultaneously reflect space and reverse time. Some of these symmetries are anomalous, leading to Lieb-Schultz-Mattis-type constraints, thus excluding a trivially gapped phase. Examples include a mod 8 anomaly in the Majorana chain and various mod 2 anomalies in the spin chain. In some cases, there is an exact, non-anomalous lattice symmetry that flows in the continuum to CPT. In some other cases, the CPT symmetry of the continuum theory is emergent or absent. Depending on the model, the anomaly of the lattice model is matched in the continuum in different ways. In particular, it can be mapped to an emergent anomaly of an emanant symmetry.
</summary>
<dc:date>2025-11-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Crystallization of Glauber's salt</title>
<link href="https://hdl.handle.net/1721.1/164009" rel="alternate"/>
<author>
<name>Coberly, C. Wheeler.</name>
</author>
<id>https://hdl.handle.net/1721.1/164009</id>
<updated>2025-11-25T06:32:25Z</updated>
<published>1936-01-01T00:00:00Z</published>
<summary type="text">Crystallization of Glauber's salt
Coberly, C. Wheeler.
Thesis: M.S., Massachusetts Institute of Technology, Department of Chemical Engineering, 1936; Includes bibliographical references (leaf 39).
</summary>
<dc:date>1936-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Investigation of torquemeters for high speed shafts</title>
<link href="https://hdl.handle.net/1721.1/164008" rel="alternate"/>
<author>
<name>Saluja, Narinder S.
            (Narinder Singh)</name>
</author>
<id>https://hdl.handle.net/1721.1/164008</id>
<updated>2025-11-25T06:33:34Z</updated>
<published>1959-01-01T00:00:00Z</published>
<summary type="text">Investigation of torquemeters for high speed shafts
Saluja, Narinder S.
            (Narinder Singh)
Thesis: B.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1959; Includes bibliographical references (leaves 64-67).
</summary>
<dc:date>1959-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The resonant-frequency shift of a microwave cavity caused by the high-density plasma in semiconductors, as a function of magnetic field</title>
<link href="https://hdl.handle.net/1721.1/164007" rel="alternate"/>
<author>
<name>Weber, Robert.</name>
</author>
<id>https://hdl.handle.net/1721.1/164007</id>
<updated>2025-11-25T03:04:01Z</updated>
<published>1959-01-01T00:00:00Z</published>
<summary type="text">The resonant-frequency shift of a microwave cavity caused by the high-density plasma in semiconductors, as a function of magnetic field
Weber, Robert.
Thesis: Sc. D., Massachusetts Institute of Technology, Department of Physics, 1959; Includes bibliographical references (leaves 46-47).
</summary>
<dc:date>1959-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analysis of angular scintillation of radar echoes</title>
<link href="https://hdl.handle.net/1721.1/164006" rel="alternate"/>
<author>
<name>Graham, James William.</name>
</author>
<id>https://hdl.handle.net/1721.1/164006</id>
<updated>2025-11-25T06:32:44Z</updated>
<published>1952-01-01T00:00:00Z</published>
<summary type="text">Analysis of angular scintillation of radar echoes
Graham, James William.
Thesis: M.S., Massachusetts Institute of Technology, Department of Electrical Engineering, 1952
</summary>
<dc:date>1952-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rapid transit use of existing rail lines</title>
<link href="https://hdl.handle.net/1721.1/164005" rel="alternate"/>
<author>
<name>Kenyon, Michael D.</name>
</author>
<id>https://hdl.handle.net/1721.1/164005</id>
<updated>2025-11-25T06:33:31Z</updated>
<published>1958-01-01T00:00:00Z</published>
<summary type="text">Rapid transit use of existing rail lines
Kenyon, Michael D.
Thesis: B.S., Massachusetts Institute of Technology, Department of Civil Engineering, 1958; Includes bibliographical references (leaf 25).
</summary>
<dc:date>1958-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mass transfer from rotating cylinders</title>
<link href="https://hdl.handle.net/1721.1/164004" rel="alternate"/>
<author>
<name>Cotter, John.</name>
</author>
<author>
<name>Schmidt, Guy L.</name>
</author>
<id>https://hdl.handle.net/1721.1/164004</id>
<updated>2025-11-25T06:33:29Z</updated>
<published>1956-01-01T00:00:00Z</published>
<summary type="text">Mass transfer from rotating cylinders
Cotter, John.; Schmidt, Guy L.
Thesis: B.S., Massachusetts Institute of Technology, Department of Chemical Engineering, 1956; Bibliography: leaf 38.
</summary>
<dc:date>1956-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>An observation about the Chicago Council and its policies</title>
<link href="https://hdl.handle.net/1721.1/164003" rel="alternate"/>
<author>
<name>Naber, Fred P.</name>
</author>
<id>https://hdl.handle.net/1721.1/164003</id>
<updated>2025-11-25T06:33:26Z</updated>
<published>1948-01-01T00:00:00Z</published>
<summary type="text">An observation about the Chicago Council and its policies
Naber, Fred P.
Thesis: B.S., Massachusetts Institute of Technology, Department of Business and Engineering Administration, 1948
</summary>
<dc:date>1948-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The design and construction of an ultra-high vacuum field-ion microscope.</title>
<link href="https://hdl.handle.net/1721.1/164002" rel="alternate"/>
<author>
<name>Olson, Gregory Bruce.</name>
</author>
<id>https://hdl.handle.net/1721.1/164002</id>
<updated>2025-11-25T06:32:36Z</updated>
<published>1970-01-01T00:00:00Z</published>
<summary type="text">The design and construction of an ultra-high vacuum field-ion microscope.
Olson, Gregory Bruce.
Thesis: M.S., Massachusetts Institute of Technology, Department of Metallurgy and Materials Science, 1970; Bibliography: leaf 35.
</summary>
<dc:date>1970-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>South End Center for the Arts.</title>
<link href="https://hdl.handle.net/1721.1/164001" rel="alternate"/>
<author>
<name>Dunbar, Gary Arthur.</name>
</author>
<id>https://hdl.handle.net/1721.1/164001</id>
<updated>2025-11-25T06:33:23Z</updated>
<published>1965-01-01T00:00:00Z</published>
<summary type="text">South End Center for the Arts.
Dunbar, Gary Arthur.
Thesis: B. Arch., Massachusetts Institute of Technology, Department of Architecture, 1965; "Special requirements for group A occupancy: theatres" leaves [34-42] inserted. "Special requirements for group C occupancy: schools" leaves [50-54] inserted.; Bibliography: leaf 20.
</summary>
<dc:date>1965-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analysis of braced excavations.</title>
<link href="https://hdl.handle.net/1721.1/164000" rel="alternate"/>
<author>
<name>Wong, Ing Hieng.</name>
</author>
<id>https://hdl.handle.net/1721.1/164000</id>
<updated>2025-11-25T03:04:06Z</updated>
<published>1971-01-01T00:00:00Z</published>
<summary type="text">Analysis of braced excavations.
Wong, Ing Hieng.
Thesis: Sc. D., Massachusetts Institute of Technology, Department of Civil Engineering, 1971; Three leaves on transparent sheets. Vita.; Bibliography: leaves 95-99.
</summary>
<dc:date>1971-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shipleasing as a prospective method of l/t financing for international shipowners.</title>
<link href="https://hdl.handle.net/1721.1/163999" rel="alternate"/>
<author>
<name>Angelicoussis, John Anthony.</name>
</author>
<id>https://hdl.handle.net/1721.1/163999</id>
<updated>2025-11-25T06:32:28Z</updated>
<published>1974-01-01T00:00:00Z</published>
<summary type="text">Shipleasing as a prospective method of l/t financing for international shipowners.
Angelicoussis, John Anthony.
Thesis: M.S., Massachusetts Institute of Technology, Sloan School of Management, 1974; Includes bibliographical references.
</summary>
<dc:date>1974-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modelling rail freight management.</title>
<link href="https://hdl.handle.net/1721.1/163998" rel="alternate"/>
<author>
<name>Assad, A.
            (Arjang)</name>
</author>
<id>https://hdl.handle.net/1721.1/163998</id>
<updated>2025-11-25T03:03:57Z</updated>
<published>1978-01-01T00:00:00Z</published>
<summary type="text">Modelling rail freight management.
Assad, A.
            (Arjang)
Thesis: Ph. D., Massachusetts Institute of Technology, Sloan School of Management, 1978; Vita.; Bibliography: leaves 277-292.
</summary>
<dc:date>1978-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The effects of rapid thermal annealing on gallium arsenide grown by MOCVD on silicon substrates</title>
<link href="https://hdl.handle.net/1721.1/163997" rel="alternate"/>
<author>
<name>Lehman, LeNore Louise.</name>
</author>
<id>https://hdl.handle.net/1721.1/163997</id>
<updated>2025-11-25T06:32:40Z</updated>
<published>1988-01-01T00:00:00Z</published>
<summary type="text">The effects of rapid thermal annealing on gallium arsenide grown by MOCVD on silicon substrates
Lehman, LeNore Louise.
Thesis: M.S., Massachusetts Institute of Technology, Department of Materials Science and Engineering, 1988; Includes bibliographical references.
</summary>
<dc:date>1988-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Acoustic-phonetic and lexical constraints in word recognition: lexical access using partial information</title>
<link href="https://hdl.handle.net/1721.1/163996" rel="alternate"/>
<author>
<name>Huttenlocher, Daniel P.</name>
</author>
<id>https://hdl.handle.net/1721.1/163996</id>
<updated>2025-11-25T06:32:20Z</updated>
<published>1984-01-01T00:00:00Z</published>
<summary type="text">Acoustic-phonetic and lexical constraints in word recognition: lexical access using partial information
Huttenlocher, Daniel P.
Thesis: M.S., Massachusetts Institute of Technology, Department of Electrical Engineering and Computer Science, 1984; Bibliography: leaves 73-77.
</summary>
<dc:date>1984-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Metabolism in vivo of 1, 3-butanediol in the rat</title>
<link href="https://hdl.handle.net/1721.1/163995" rel="alternate"/>
<author>
<name>Nahapetian, Aratoonnaz,
            author.</name>
</author>
<id>https://hdl.handle.net/1721.1/163995</id>
<updated>2025-11-25T03:03:27Z</updated>
<published>1971-01-01T00:00:00Z</published>
<summary type="text">Metabolism in vivo of 1, 3-butanediol in the rat
Nahapetian, Aratoonnaz,
            author.
The metabolism of 1, 3-butanediol (BD) was investigated in vitamin B 12 -deficient and normal rats and in liver slice and diaphragm systems. Body weight gain and feed efficiency were determined in rats fed ad libitum for five weeks on a basal 5% BD or 5% sodium propionate diet with and without vitamin B12. The rats were train-fed for ten months on the same diets. The presence of sodium prop i onate in vitamin B12-deficient basal diets resulted in reduced food intake while BD had the opposite effect. As a result, vitamin B12-deficient rats fed a 5% sodium propionate diet grew less than those fed a 5% BD diet. The metabolism in vivo of BD labeled in carbon-1 (BD-l-cl4) and carbon-4 (BD-4-cl4) were compared to the metabolism of propionate-l-cl4 (PRP-l-cl4) in vitamin B12-deficient and normal rats. Vitamin B12 deficiency reduced the oxidation of sodium propionate but not that of BD, and had no effect on glycogen labeling from BD-l-cl4 and BD-4-cl4. For PRP-l-cl4 however, vitamin B12 deficiency resulted in not only no incorporation of label but liver glycogen levels were very small. On the other hand , when vitamin B12 was present in the diet, the labeling of glycogen from propionate was higher than that from either of the BD-labeled test compounds. Methylmalonic aciduria and urinary loss of ingested activity was higher in vitamin B12-deficient rats fed PRP-l-cl4 than in those fed l abe l ed BD. Nearly all of the urinary activity of vitamin B 1 2-deficient rats fed PRP-l-cl4 was in the form of me t hy l malonic acid (MMA), while little, if any, of the activity was found in the MMA fraction of urine of vita m in B12-deficient rats fed labeled BD. The metabolism in vivo of BD-c14 and BD-3-c14 was investigated in normal rats. About eighty percent of BD was oxidized to carbon dioxide within 32 hours. Its oxidation in the first eight hours was higher when BD was administered intraperitoneally than when it was fed by stomach tube. The loss of ingested activity in the urine expressed as a percentage of total intake and 1,3-BD was higher at the higher doses of BD. However, the activity in urinary BD could not account for all the activity in the urine. A considerable amount of ketone bodies was detected in urine of rats after feeding BD while no detectable ketone bodies were found in the urine of control rats. In addition, relative specific activities of urinary BD and S -hydroxybutyrate were 0.91 and 0.50 respectively. Polarimetry of both purified urinary BD and S -hydroxybutyrate showed that the percentages of (+)- and (-)-isomers of both compounds were 40 and 60% respectively. The metabolism in vitro of BD-3-c14 and DL-S - hydroxybutyrate-4-cl4 were investigated in systems which contained liver slices alone, diaphragm alone or both liver slices plus diaphragm. The oxidation rate of S -hydroxybut y rate was lower in liver slices than in either the diaphragm or the liver slices plus diaphragm systems. Moreover, the rate of oxidation of S -hydrox y- butyrate was highest in the system which included both liver slices and diaphragm. On the other hand, the oxidation rate of BD was lower in the system which had only diaphragm than in the other two systems. However, the rate of BD oxidation was highest in the system - wh ich included both liver slices and diaphragm. Presence of BD gave rise to increased D-(-)- S -hydroxybutyrate and acetoacetate in systems which contained liver slices or liver slices plus diaphragm. In addition, the production rate of D-(-)- S - hydroxybutyric acid was higher than that of acetoacetate in the pre sence of BD, while the opposite was true in its absence. Finally, all the radioactivity in the control incubation media was accounted for by BD-3-cl4, while about 1.5 and 98.5 percent of incubation media activity were recovered in S -hydroxybutyrate and BD peaks, respectively, in incub at ion systems containing liver. The results of this study indicate that 1,3-BD and sodium propionate do not share a common metabolic pathway in the rat. The data suggest, however, that nahapetian-4-1, 3-BD is most probably oxidized to S-hydroxybutyric acid using a "1,3-butanediol dehydrogenase" that is higher in activity in the liver than in the diaphragm. M oreover the (+)-isomer of BD is oxidized at a faster rate than the (-)-isomer, suggesting that the two isomers are oxidized by two different pathways.
Thesis: Sc. D., Massachusetts Institute of Technology, Department of Nutrition and Food Science, 1971; Thesis supervised by Sanford A. Miller Vita: page 196; Includes bibliographical references (pages 182-196)
</summary>
<dc:date>1971-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>An investigation of the merits of a four-element coplanar vacuum tube when used as a modulator at carrier telephone frequencies</title>
<link href="https://hdl.handle.net/1721.1/163994" rel="alternate"/>
<author>
<name>Perkins, Edwin H.</name>
</author>
<id>https://hdl.handle.net/1721.1/163994</id>
<updated>2025-11-25T06:32:33Z</updated>
<published>1930-01-01T00:00:00Z</published>
<summary type="text">An investigation of the merits of a four-element coplanar vacuum tube when used as a modulator at carrier telephone frequencies
Perkins, Edwin H.
Thesis: M.S., Massachusetts Institute of Technology, Department of Electrical Engineering, 1930; Includes bibliographical references (leaf 115).
</summary>
<dc:date>1930-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Micro-analysis of grinding machine cuttings</title>
<link href="https://hdl.handle.net/1721.1/163993" rel="alternate"/>
<author>
<name>Zurlo, J. V.</name>
</author>
<author>
<name>Terkelsen, E. A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163993</id>
<updated>2025-11-25T06:33:21Z</updated>
<published>1922-01-01T00:00:00Z</published>
<summary type="text">Micro-analysis of grinding machine cuttings
Zurlo, J. V.; Terkelsen, E. A.
Thesis: B.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1922
</summary>
<dc:date>1922-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tests upon bamboo as a concrete reinforcement and a consideration of its application in construction</title>
<link href="https://hdl.handle.net/1721.1/163992" rel="alternate"/>
<author>
<name>Young, Joe W.</name>
</author>
<author>
<name>Guo, Dianbang.</name>
</author>
<id>https://hdl.handle.net/1721.1/163992</id>
<updated>2025-11-25T06:33:09Z</updated>
<published>1924-01-01T00:00:00Z</published>
<summary type="text">Tests upon bamboo as a concrete reinforcement and a consideration of its application in construction
Young, Joe W.; Guo, Dianbang.
Thesis: B.S., Massachusetts Institute of Technology, Department of Civil Engineering, 1924
</summary>
<dc:date>1924-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A precision method for the determination of dew points of complex gaseous systems</title>
<link href="https://hdl.handle.net/1721.1/163991" rel="alternate"/>
<author>
<name>Cox, John Tatum.</name>
</author>
<id>https://hdl.handle.net/1721.1/163991</id>
<updated>2025-11-25T06:32:38Z</updated>
<published>1936-01-01T00:00:00Z</published>
<summary type="text">A precision method for the determination of dew points of complex gaseous systems
Cox, John Tatum.
Thesis: M.S., Massachusetts Institute of Technology, Department of Chemical Engineering, 1936; Includes bibliographical references (leaf 43).
</summary>
<dc:date>1936-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A biomimetic chip to assess subcutaneous bioavailability of monoclonal antibodies in humans</title>
<link href="https://hdl.handle.net/1721.1/163990" rel="alternate"/>
<author>
<name>Chandran Suja, Vineeth</name>
</author>
<author>
<name>Qi, Qin M</name>
</author>
<author>
<name>Halloran, Kevin</name>
</author>
<author>
<name>Zhang, Jifeng</name>
</author>
<author>
<name>Shaha, Suyog</name>
</author>
<author>
<name>Prakash, Supriya</name>
</author>
<author>
<name>Kumbhojkar, Ninad</name>
</author>
<author>
<name>Deslandes, Antoine</name>
</author>
<author>
<name>Huille, Sylvain</name>
</author>
<author>
<name>Gokarn, Yatin R</name>
</author>
<author>
<name>Mitragotri, Samir</name>
</author>
<id>https://hdl.handle.net/1721.1/163990</id>
<updated>2025-11-25T06:37:31Z</updated>
<published>2023-10-09T00:00:00Z</published>
<summary type="text">A biomimetic chip to assess subcutaneous bioavailability of monoclonal antibodies in humans
Chandran Suja, Vineeth; Qi, Qin M; Halloran, Kevin; Zhang, Jifeng; Shaha, Suyog; Prakash, Supriya; Kumbhojkar, Ninad; Deslandes, Antoine; Huille, Sylvain; Gokarn, Yatin R; Mitragotri, Samir
Subcutaneous (subQ) injection is a common route for delivering biotherapeutics, wherein pharmacokinetics is largely influenced by drug transport in a complex subQ tissue microenvironment. The selection of good drug candidates with beneficial pharmacokinetics for subQ injections is currently limited by a lack of reliable testing models. To address this limitation, we report here a Subcutaneous Co-Culture Tissue-on-a-chip for Injection Simulation (SubCuTIS). SubCuTIS possesses a 3D coculture tissue architecture, and it allows facile quantitative determination of relevant scale independent drug transport rate constants. SubCuTIS captures key in vivo physiological characteristics of the subQ tissues, and it differentiates the transport behavior of various chemically distinct molecules. We supplemented the transport measurements with theoretical modeling, which identified subtle differences in the local absorption rate constants of seven clinically available mAbs. Accounting for first-order proteolytic catabolism, we established a mathematical framework to assess clinical bioavailability using the local absorption rate constants obtained from SubCuTIS. Taken together, the technology described here broadens the applicability of organs-on-chips as a standardized and easy-to-use device for quantitative analysis of subQ drug transport.
</summary>
<dc:date>2023-10-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Nanoparticle-induced lipid membrane deformation influences the design of biomedicine</title>
<link href="https://hdl.handle.net/1721.1/163989" rel="alternate"/>
<author>
<name>Pincus, Isaac</name>
</author>
<author>
<name>Qi, Qin M</name>
</author>
<id>https://hdl.handle.net/1721.1/163989</id>
<updated>2025-11-25T06:37:41Z</updated>
<published>2026-07-21T00:00:00Z</published>
<summary type="text">Nanoparticle-induced lipid membrane deformation influences the design of biomedicine
Pincus, Isaac; Qi, Qin M
Controlling the physicochemical properties of nanoparticles is important for their performance as drug carriers, pharmaceuticals, or imaging contrast agents in nanomedicine. Predictive models can accelerate experimental designs at reduced time and costs compared to a brute-force approach conventionally used. However, physical principles underlying particle-cell interactions are still poorly understood due to their large size contrast, hindering the model development. In this work, we describe a model that examines the interaction between multiple particles and the membrane of a mammalian cell or an artificial vesicle, thus influencing the outcomes of surface adsorption, detachment or uptake of particles. Compared to existing biophysical models on particle-membrane interactions accounting for membrane adhesion, stretching and bending energies, we make several important updates that are essential to reaching quantitative agreement with existing experimental data. Particle-induced membrane tension changes are crucial to the membrane deformation even at very low surface concentrations (0.1%); we explain this surprising finding using a new length scale previously neglected. Furthermore, a multi-step and non-equilibrium endocytosis mechanism is proposed in the absence of specific receptor-ligand interactions, inspired by recent experimental evidence on the dynamic regulation of membrane tension through the active transport of lipid molecules. We demonstrate the predictive power of our model in generating the adsorption isotherms and shear-induced particle detachment from cell surfaces and the size-dependent rate of particle uptake. Our research provides a framework to design tailor-made nanoparticles with controllable interaction outcomes with various cell types based on a quantitative and fundamental understanding.
</summary>
<dc:date>2026-07-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Effective use of biosensors for high-throughput library screening for metabolite production</title>
<link href="https://hdl.handle.net/1721.1/163988" rel="alternate"/>
<author>
<name>Kaczmarek, Jennifer A</name>
</author>
<author>
<name>Prather, Kristala LJ</name>
</author>
<id>https://hdl.handle.net/1721.1/163988</id>
<updated>2025-11-25T06:37:39Z</updated>
<published>2021-08-04T00:00:00Z</published>
<summary type="text">Effective use of biosensors for high-throughput library screening for metabolite production
Kaczmarek, Jennifer A; Prather, Kristala LJ
The development of fast and affordable microbial production from recombinant pathways is a challenging endeavor, with targeted improvements difficult to predict due to the complex nature of living systems. To address the limitations in biosynthetic pathways, much work has been done to generate large libraries of various genetic parts (promoters, RBSs, enzymes, etc.) to discover library members that bring about significantly improved levels of metabolite production. To evaluate these large libraries, high throughput approaches are necessary, such as those that rely on biosensors. There are various modes of operation to apply biosensors to library screens that are available at different scales of throughput. The effectiveness of each biosensor-based method is dependent on the pathway or strain to which it is applied, and all approaches have strengths and weaknesses to be carefully considered for any high throughput library screen. In this review, we discuss the various approaches used in biosensor screening for improved metabolite production, focusing on transcription factor-based biosensors.
</summary>
<dc:date>2021-08-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Lincoln Laboratory and MIT Haystack Observatory partner to unveil hidden parts of the galaxy</title>
<link href="https://hdl.handle.net/1721.1/163987" rel="alternate"/>
<author>
<name>Parde, Nathan</name>
</author>
<id>https://hdl.handle.net/1721.1/163987</id>
<updated>2025-11-25T06:39:00Z</updated>
<published>2025-09-22T00:00:00Z</published>
<summary type="text">Lincoln Laboratory and MIT Haystack Observatory partner to unveil hidden parts of the galaxy
Parde, Nathan
They propose building a telescope made of thousands of tiny, identical satellites that will work together to reveal low-frequency radio waves in space.
</summary>
<dc:date>2025-09-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>A method for correcting the substructure of multiprong jets using the Lund jet plane</title>
<link href="https://hdl.handle.net/1721.1/163986" rel="alternate"/>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Makarenko, V.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Benato, L.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Giordano, C.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<author>
<name>Schieck, J.</name>
</author>
<author>
<name>Schöfbeck, R.</name>
</author>
<id>https://hdl.handle.net/1721.1/163986</id>
<updated>2025-11-25T06:37:07Z</updated>
<published>2025-11-10T00:00:00Z</published>
<summary type="text">A method for correcting the substructure of multiprong jets using the Lund jet plane
Hayrapetyan, A.; Makarenko, V.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Benato, L.; Bergauer, T.; Damanakis, K.; Dragicevic, M.; Giordano, C.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.; Schieck, J.; Schöfbeck, R.
Many analyses at the CERN LHC exploit the substructure of jets to identify heavy resonances produced with high momenta that decay into multiple quarks and/or gluons. This paper presents a new technique for correcting the substructure of simulated large-radius jets from multiprong decays. The technique is based on reclustering the jet constituents into several subjets such that each subjet represents a single prong, and separately correcting the radiation pattern in the Lund jet plane of each subjet using a correction derived from data. The data presented here correspond to an integrated luminosity of 138 fb−1 collected by the CMS experiment between 2016–2018 at a center-of-mass energy of 13 TeV. The correction procedure improves the agreement between data and simulation for several different substructure observables of multiprong jets. This technique establishes, for the first time, a robust calibration for the substructure of jets with four or more prongs, enabling future measurements and searches for new phenomena containing these signatures.
</summary>
<dc:date>2025-11-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Inclusionary and Exclusionary Preferences: A Test of Three Cognitive Mechanisms</title>
<link href="https://hdl.handle.net/1721.1/163985" rel="alternate"/>
<author>
<name>Landau-Wells, Marika</name>
</author>
<author>
<name>Lydic, Kirsten O.</name>
</author>
<author>
<name>Kennedy, Joachim</name>
</author>
<author>
<name>Mittman, Benjamin G.</name>
</author>
<author>
<name>Thompson, Todd W.</name>
</author>
<author>
<name>Gupta, Akhil</name>
</author>
<author>
<name>Saxe, Rebecca</name>
</author>
<id>https://hdl.handle.net/1721.1/163985</id>
<updated>2025-11-25T06:37:00Z</updated>
<published>2025-11-22T00:00:00Z</published>
<summary type="text">Inclusionary and Exclusionary Preferences: A Test of Three Cognitive Mechanisms
Landau-Wells, Marika; Lydic, Kirsten O.; Kennedy, Joachim; Mittman, Benjamin G.; Thompson, Todd W.; Gupta, Akhil; Saxe, Rebecca
Exclusionary social policies take a significant toll on the mental and physical health of targeted groups. Support for specific exclusionary policies does not always align with general antipathy towards the targeted group, however. Does support for specific exclusionary policies rely on particular thought processes (i.e., cognitive mechanisms)? Does opposition? We investigate these questions through the lens of “bathroom laws” across two studies. In Study 1, we use functional neuroimaging to test three candidate cognitive mechanisms from the literature: (1) threat-related emotions (e.g., fear, disgust) supporting exclusionary preferences; (2) mentalizing (e.g., empathy, perspective-taking) supporting inclusionary preferences; and (3) self-regulation (e.g., aligning one’s behavior with one’s goals) supporting inclusionary preferences. Consistent with the intergroup conflict and prejudice literatures, we find evidence of a motivated self-regulation mechanism in bathroom law opponents. In Study 2, we investigate a possible source of this motivation using text analysis of open-ended policy preference justifications. We find that bathroom law opponents link their policy preference to a small number of specific values, particularly autonomy of action. Taken together, these studies point to a value-driven, motivational account of inclusionary preferences that reconciles puzzling patterns of public opinion, offers new levers for tolerance interventions, and provides some insight into the brain-basis of political behavior.
</summary>
<dc:date>2025-11-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Accelerated Bayesian Calibration and Uncertainty Quantification of RANS Turbulence Model Parameters for Stratified Atmospheric Boundary Layer Flows</title>
<link href="https://hdl.handle.net/1721.1/163984" rel="alternate"/>
<author>
<name>Shin, Ethan Y.</name>
</author>
<author>
<name>Howland, Michael F.</name>
</author>
<id>https://hdl.handle.net/1721.1/163984</id>
<updated>2025-11-25T06:37:03Z</updated>
<published>2025-11-22T00:00:00Z</published>
<summary type="text">Accelerated Bayesian Calibration and Uncertainty Quantification of RANS Turbulence Model Parameters for Stratified Atmospheric Boundary Layer Flows
Shin, Ethan Y.; Howland, Michael F.
In operational weather models, the effects of turbulence in the atmospheric boundary layer (ABL) on the resolved flow are modeled using turbulence parameterizations. These parameterizations typically use a predetermined set of model parameters that are tuned to limited data from canonical flows. Using these fixed parameters results in deterministic predictions that neglect uncertainty in the unresolved turbulence processes. In this study, we perform a machine learning-accelerated Bayesian inversion of a single-column model of the ABL. This approach is used to calibrate and quantify uncertainty in model parameters of Reynolds-averaged Navier–Stokes turbulence models. To verify the data-driven uncertainty quantification methodology, we test in an idealized setup in which a prescribed but unobserved set of parameters is learned from noisy approximations of the model output. Following this verification, we learn the parameters and their uncertainties in two different turbulence models conditioned on scale-resolving large-eddy simulation data over a range of ABL stabilities. We show how Bayesian inversion of a numerical model improves flow predictions by investigating the underlying mean momentum budgets. Further, we show that uncertainty quantification based on neutral ABL surface layer data recovers the relationships between parameters that have been predicted using theoretical modeling, but that learning the parameters based on stable ABL data or data from outside the surface layer can lead to different parameter relationships than neutral surface layer theory. Efforts to systematically reduce parameter uncertainty reveal that (1) sampling wind speed up to the ABL height can reduce uncertainty in key model parameters by up to $$84\%$$ , and (2) assimilating fluid flow quantities beyond first-order moment statistics can further reduce uncertainty in ways that baseline wind speed assimilation alone cannot achieve. The parameters learned using Bayesian uncertainty quantification generally yield lower error than standard deterministic parameters in out-of-sample tests and also provide uncertainty intervals on predictions.
</summary>
<dc:date>2025-11-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Europa Clipper Magnetometer Boom Deployment: A First Look at the Magnetometer Observations of the Spacecraft and the Interplanetary Magnetic Field</title>
<link href="https://hdl.handle.net/1721.1/163983" rel="alternate"/>
<author>
<name>Cochrane, Corey J.</name>
</author>
<author>
<name>Joy, Steven P.</name>
</author>
<author>
<name>Korth, Haje</name>
</author>
<author>
<name>Biersteker, John B.</name>
</author>
<author>
<name>Blacksberg, Jordana</name>
</author>
<author>
<name>Bouchard, Michael</name>
</author>
<author>
<name>Contreras, Jacob</name>
</author>
<author>
<name>Dawson, Olivia R.</name>
</author>
<author>
<name>Khurana, Krishan K.</name>
</author>
<author>
<name>Murphy, Neil</name>
</author>
<author>
<name>Palm, Derek</name>
</author>
<author>
<name>Perley, Mitch O.</name>
</author>
<author>
<name>Pierce, David R.</name>
</author>
<author>
<name>Richter, Ingo</name>
</author>
<author>
<name>Russell, Christopher T.</name>
</author>
<id>https://hdl.handle.net/1721.1/163983</id>
<updated>2025-11-25T06:37:05Z</updated>
<published>2025-11-19T00:00:00Z</published>
<summary type="text">Europa Clipper Magnetometer Boom Deployment: A First Look at the Magnetometer Observations of the Spacecraft and the Interplanetary Magnetic Field
Cochrane, Corey J.; Joy, Steven P.; Korth, Haje; Biersteker, John B.; Blacksberg, Jordana; Bouchard, Michael; Contreras, Jacob; Dawson, Olivia R.; Khurana, Krishan K.; Murphy, Neil; Palm, Derek; Perley, Mitch O.; Pierce, David R.; Richter, Ingo; Russell, Christopher T.
NASA’s Europa Clipper flagship mission is designed to investigate the habitability of Jupiter’s moon Europa. A key instrument aboard the spacecraft is the Europa Clipper Magnetometer (ECM), a suite of fluxgate magnetometer sensors deployed on a boom to minimize spacecraft-induced magnetic interference. The ECM investigation aims to characterize Europa’s induced magnetic field, offering constraints on the salinity, depth, and thickness of its subsurface ocean. This work presents the first in-flight ECM observations acquired during the magnetometer boom deployment and shortly thereafter. We show how these observations provide the requisite evidence needed to validate a successful deployment. We also demonstrate how these observations can be used to calibrate the sensor offsets and to develop new magnetic field models of the spacecraft of varying complexity, thus enabling the robust removal of the instrument’s zero-levels which is critical for achieving the mission’s science objectives. We finally share preliminary calibrated magnetometer observations acquired over a two-month period after deployment, revealing a very active interplanetary magnetic field characteristic of solar maximum.
</summary>
<dc:date>2025-11-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>DOE selects MIT to establish a Center for the Exascale Simulation of Coupled High-Enthalpy Fluid–Solid Interactions</title>
<link href="https://hdl.handle.net/1721.1/163982" rel="alternate"/>
<author>
<name>Hadley, F</name>
</author>
<id>https://hdl.handle.net/1721.1/163982</id>
<updated>2025-11-25T06:39:03Z</updated>
<published>2025-09-10T00:00:00Z</published>
<summary type="text">DOE selects MIT to establish a Center for the Exascale Simulation of Coupled High-Enthalpy Fluid–Solid Interactions
Hadley, F
The research center, sponsored by the DOE’s National Nuclear Security Administration, will advance the simulation of extreme environments, such as those in hypersonic flight and atmospheric reentry.
</summary>
<dc:date>2025-09-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Deuteron identification via time of flight with LHCb</title>
<link href="https://hdl.handle.net/1721.1/163981" rel="alternate"/>
<author>
<name>LHCb Collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163981</id>
<updated>2025-11-25T06:36:57Z</updated>
<published>2025-11-19T00:00:00Z</published>
<summary type="text">Deuteron identification via time of flight with LHCb
LHCb Collaboration
It is shown that the timing capabilities of the LHCb detector operated during the LHC Run 2 can be used to identify light ion particles with momenta of a few GeV/c. This is achieved by estimating the particle time of flight through a newly developed technique. A dedicated reconstruction procedure and a neural-network-based estimator of the particle speed have been developed to enable deuteron identification by suppressing the abundant background from lighter particles. The performance of the identification procedure is demonstrated in a sample of proton-helium collisions at s NN  = 110 GeV, where the production of deuteron and triton particles is observed. This novel approach opens the way to study deuteron and antideuteron production for different collision systems at different energy scales, exploiting the rich dataset collected by the LHCb experiment.
</summary>
<dc:date>2025-11-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Confidently Comparing Estimates with the c-value</title>
<link href="https://hdl.handle.net/1721.1/163980" rel="alternate"/>
<author>
<name>Trippe, Brian L</name>
</author>
<author>
<name>Deshpande, Sameer K</name>
</author>
<author>
<name>Broderick, Tamara</name>
</author>
<id>https://hdl.handle.net/1721.1/163980</id>
<updated>2025-11-25T06:37:35Z</updated>
<published>2023-02-24T00:00:00Z</published>
<summary type="text">Confidently Comparing Estimates with the c-value
Trippe, Brian L; Deshpande, Sameer K; Broderick, Tamara
Modern statistics provides an ever-expanding toolkit for estimating unknown parameters. Consequently, applied statisticians frequently face a difficult decision: retain a parameter estimate from a familiar method or replace it with an estimate from a newer or more complex one. While it is traditional to compare estimates using risk, such comparisons are rarely conclusive in realistic settings. In response, we propose the “c-value” as a measure of confidence that a new estimate achieves smaller loss than an old estimate on a given dataset. We show that it is unlikely that a large c-value coincides with a larger loss for the new estimate. Therefore, just as a small p-value supports rejecting a null hypothesis, a large c-value supports using a new estimate in place of the old. For a wide class of problems and estimates, we show how to compute a c-value by first constructing a data-dependent high-probability lower bound on the difference in loss. The c-value is frequentist in nature, but we show that it can provide validation of shrinkage estimates derived from Bayesian models in real data applications involving hierarchical models and Gaussian processes. Supplementary materials for this article are available online.
</summary>
<dc:date>2023-02-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>AI Accelerator Announces Award Winners</title>
<link href="https://hdl.handle.net/1721.1/163979" rel="alternate"/>
<author>
<name>Accelerator, AI</name>
</author>
<id>https://hdl.handle.net/1721.1/163979</id>
<updated>2025-11-25T06:39:01Z</updated>
<published>2025-07-31T00:00:00Z</published>
<summary type="text">AI Accelerator Announces Award Winners
Accelerator, AI
The Department of Air Force (DAF)-MIT AI Accelerator is a unique collaboration designed to advance the field of AI to improve DAF operations and  address broader societal needs. In June 2025, the DAF-MIT Artificial Intelligence Accelerator named the recipients of AI Accelerator awards, recognizing scientific excellence, distinguished contributions, and other exceptional accomplishments. The awardees were nominated and selected from members of the AI Accelerator community, including individuals from the DAF, MIT campus, and MIT Lincoln Laboratory.
</summary>
<dc:date>2025-07-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Future circular collider feasibility study report</title>
<link href="https://hdl.handle.net/1721.1/163978" rel="alternate"/>
<author>
<name>Benedikt, M.</name>
</author>
<author>
<name>Zimmermann, F.</name>
</author>
<author>
<name>Auchmann, B.</name>
</author>
<author>
<name>Bartmann, W.</name>
</author>
<author>
<name>Burnet, J. P.</name>
</author>
<author>
<name>Carli, C.</name>
</author>
<author>
<name>Chancé, A.</name>
</author>
<author>
<name>Craievich, P.</name>
</author>
<author>
<name>Giovannozzi, M.</name>
</author>
<author>
<name>Grojean, C.</name>
</author>
<author>
<name>Gutleber, J.</name>
</author>
<author>
<name>Hanke, K.</name>
</author>
<author>
<name>Henriques, A.</name>
</author>
<author>
<name>Janot, P.</name>
</author>
<author>
<name>Lourenço, C.</name>
</author>
<author>
<name>Mangano, M.</name>
</author>
<author>
<name>Otto, T.</name>
</author>
<author>
<name>Poole, J.</name>
</author>
<author>
<name>Rajagopalan, S.</name>
</author>
<author>
<name>Raubenheimer, T.</name>
</author>
<id>https://hdl.handle.net/1721.1/163978</id>
<updated>2025-11-25T06:37:26Z</updated>
<published>2025-11-17T00:00:00Z</published>
<summary type="text">Future circular collider feasibility study report
Benedikt, M.; Zimmermann, F.; Auchmann, B.; Bartmann, W.; Burnet, J. P.; Carli, C.; Chancé, A.; Craievich, P.; Giovannozzi, M.; Grojean, C.; Gutleber, J.; Hanke, K.; Henriques, A.; Janot, P.; Lourenço, C.; Mangano, M.; Otto, T.; Poole, J.; Rajagopalan, S.; Raubenheimer, T.
In response to the 2020 Update of the European Strategy for Particle Physics, the Future Circular Collider (FCC) Feasibility Study was launched as an international collaboration hosted by CERN. This report describes the FCC integrated programme, which consists of two stages: an electron-positron collider (FCC-ee) in the first phase, serving as a high-luminosity Higgs, top, and electroweak factory; followed by a proton-proton collider (FCC-hh) at the energy frontier in the second phase. The FCC-ee is designed to operate at four key centre-of-mass energies: the Z pole, the WW pair production threshold, the ZH production peak, and the top/anti-top production threshold—each delivering the highest possible luminosities to four experiments. Over 15 years of operation, FCC-ee will produce more than 6 trillion Z bosons, 200 million WW pairs, nearly 3 million Higgs bosons, and 2 million top anti-top pairs. Precise energy calibration at the Z pole and WW threshold will be achieved through frequent resonant depolarisation of pilot bunches. The sequence of operation modes between the Z, WW, and ZH substages remains flexible. The FCC-hh will operate at a centre-of-mass energy of approximately 85 TeV—nearly an order of magnitude higher than the LHC—and is designed to deliver 5 to 10 times the integrated luminosity of the upcoming High-Luminosity LHC. Its mass reach for direct discovery extends to several tens of TeV. In addition to proton-proton collisions, the FCC-hh is capable of supporting ion-ion, ion-proton, and lepton-hadron collision modes. This second volume of the Feasibility Study Report presents the complete design of the FCC-ee collider, its operation and staging strategy, the full-energy booster and injector complex, required accelerator technologies, safety concepts, and technical infrastructure. It also includes the design of the FCC-hh hadron collider, development of high-field magnets, hadron injector options, and key technical systems for FCC-hh.
</summary>
<dc:date>2025-11-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Nitrous Oxide Distributions in the Oxygenated Water Column of the Sargasso Sea</title>
<link href="https://hdl.handle.net/1721.1/163977" rel="alternate"/>
<author>
<name>Meyer, Annaliese C. S.</name>
</author>
<author>
<name>Cullen, Jay T.</name>
</author>
<author>
<name>Grundle, Damian S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163977</id>
<updated>2025-11-25T06:37:36Z</updated>
<published>2022-12-15T00:00:00Z</published>
<summary type="text">Nitrous Oxide Distributions in the Oxygenated Water Column of the Sargasso Sea
Meyer, Annaliese C. S.; Cullen, Jay T.; Grundle, Damian S.
This study presents dissolved nitrous oxide (N2O) concentrations in the water column at the Bermuda Atlantic Time-series Study (BATS) station and uses a subset of these measurements to estimate air-to-sea flux for four specific time points between September 2018 and June 2019. N2O concentrations at BATS were in the range of 4.0 nmol L−1–16.9 nmol L−1, with vertical profiles which were the mirror inverse of dissolved oxygen. Regardless of season, N2O concentration maxima were found within the oxygen minimum zone (OMZ). The highest maximum N2O values were observed in November and lowest in October. As the water column at BATS remains consistently at dissolved oxygen concentrations greater than 140 µmol L−1, and therefore aerobic, we assume that the bulk of N2O production occurs through nitrification. A nitrification source is supported by a correlation between excess N2O (ΔN2O) below the mixed layer, apparent oxygen utilization (AOU) and nitrate concentrations. We estimate a pooled average yield of 0.027% to 0.038% N2O from nitrification at BATS. Finally, estimates of air–sea exchange of N2O using regional average monthly wind speeds indicated that this region acts as a weak source or a sink of atmospheric N2O, and varies between months.
</summary>
<dc:date>2022-12-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Responding to the Climate Impact of Generative AI</title>
<link href="https://hdl.handle.net/1721.1/163976" rel="alternate"/>
<author>
<name>Zewe, Adam</name>
</author>
<id>https://hdl.handle.net/1721.1/163976</id>
<updated>2025-11-25T06:39:02Z</updated>
<published>2025-09-30T00:00:00Z</published>
<summary type="text">Responding to the Climate Impact of Generative AI
Zewe, Adam
Explosive growth of AI data centers is expected to increase greenhouse gas emissions. Researchers are now seeking solutions to reduce these environmental harms.
</summary>
<dc:date>2025-09-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>A holistic model for understanding the dynamics of outsourcing</title>
<link href="https://hdl.handle.net/1721.1/163975" rel="alternate"/>
<author>
<name>Uygun, Yilmaz</name>
</author>
<author>
<name>Gotsadze, Nikoloz</name>
</author>
<author>
<name>Schupp, Florian</name>
</author>
<author>
<name>Gzirishvili, Lizi</name>
</author>
<author>
<name>Tindjou Nana, Brigitte Stephanie</name>
</author>
<id>https://hdl.handle.net/1721.1/163975</id>
<updated>2025-11-25T06:37:38Z</updated>
<published>2022-02-14T00:00:00Z</published>
<summary type="text">A holistic model for understanding the dynamics of outsourcing
Uygun, Yilmaz; Gotsadze, Nikoloz; Schupp, Florian; Gzirishvili, Lizi; Tindjou Nana, Brigitte Stephanie
Outsourcing is a complex process as many external and internal factors that look convincing in the first place might, however, lead to a failure in the long run. Motivated by this, we wanted to get a holistic understanding of such outsourcing decisions. Thus, we created a comprehensive System Dynamics simulation model including all relevant variables to examine the dynamic nature of outsourcing in a holistic manner and over time that consists of more than 200 interrelated variables. Our results show, amongst others, that higher process specialisation that requires substantial investments by the supplier appears to be favourable for an outsourcing company and shifting a larger quantity to such a supplier achieves better cost savings and thus accounts for a better overall outsourcing result. On an operational level, we identified an innovation trap, a bargaining power shift, a plagiarism trap, and a knowledge trap. Based on that, we give specific managerial recommendations to tackles these aspects. We conclude that, amongst others, it is important for innovative companies with rather complex processes and parts to carefully plan which and how many employees to release so as not to lose the knowledge on those outsourced processes and parts.
</summary>
<dc:date>2022-02-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Lincoln Lab Unveils the Most Powerful AI Supercomputer at any US University</title>
<link href="https://hdl.handle.net/1721.1/163974" rel="alternate"/>
<author>
<name>Foy, Kylie</name>
</author>
<id>https://hdl.handle.net/1721.1/163974</id>
<updated>2025-11-25T06:38:54Z</updated>
<published>2025-10-02T00:00:00Z</published>
<summary type="text">Lincoln Lab Unveils the Most Powerful AI Supercomputer at any US University
Foy, Kylie
Optimized for generative AI, TX-GAIN is driving innovation in biodefense, materials discovery, cybersecurity, and other areas of research and development.
</summary>
<dc:date>2025-10-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mediation and ANCOVA Models to Study the Influence of Solvent Retting Traits and Plant Physique on Bast Fiber Yield and Retting Time</title>
<link href="https://hdl.handle.net/1721.1/163973" rel="alternate"/>
<author>
<name>Shuvo, Ikra Iftekhar</name>
</author>
<author>
<name>Hoque, Md. Saiful</name>
</author>
<author>
<name>Khandakar, Lovely K. M.</name>
</author>
<id>https://hdl.handle.net/1721.1/163973</id>
<updated>2025-11-25T06:37:33Z</updated>
<published>2022-07-11T00:00:00Z</published>
<summary type="text">Mediation and ANCOVA Models to Study the Influence of Solvent Retting Traits and Plant Physique on Bast Fiber Yield and Retting Time
Shuvo, Ikra Iftekhar; Hoque, Md. Saiful; Khandakar, Lovely K. M.
The study aims in applying two statistical tools to analyze the retting beha-vior of plant stems for extracting bast fibers for industrial applications. Atfirst, a mediation model is employed to investigate the first hypothesis of thiswork that involves studying the color response of the retted solvent asa function of retting time on the responsible variable, fiber yield (%).Statistically, there is a significant indirect effect of retting time on fiberyield (%) through retting trait (β = −0.0142, 95% C.I. [−0.0274, −0.0011]) –a statistical inference bolstered by the Sobel test result, confirming themediation effect (p-value = 0.0329 &lt; 0.05; z-score = −2.1334; bootstrappingof 5000 resamples). Next, the second hypothesis of the current work involvesanalyzing the impact of stem form-factors on their retting time using thestatistical tool, ANCOVA. The partial- η2 indicates that cultivar treatmentaccounts for 30% variance of the retting time while controlling for the effectsof two covariates – diameter and length of the stems, in this case. Bycontrolling the Type-I error, Bonferroni and similar post-hoc tests also con-firm the statistical significance of cultivar categories pertaining to their meanretting time. Future work could focus on these underlying hypotheses andstudy the impact of microorganisms, environmental factors, and cultivartreatment variables on the retting time to optimize the overall fiber yieldand production process.
</summary>
<dc:date>2022-07-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Improving Autistic Experiences in the Workplace: Key Factors and Actionable Steps</title>
<link href="https://hdl.handle.net/1721.1/163972" rel="alternate"/>
<author>
<name>Nishith, Shruti</name>
</author>
<author>
<name>O’Brien, Amanda M.</name>
</author>
<author>
<name>Li, Cindy</name>
</author>
<author>
<name>Bungert, Lindsay</name>
</author>
<author>
<name>Oddis, Kyle</name>
</author>
<author>
<name>Riddle, Joseph</name>
</author>
<author>
<name>Gabrieli, John D. E.</name>
</author>
<id>https://hdl.handle.net/1721.1/163972</id>
<updated>2025-11-25T06:36:41Z</updated>
<published>2025-09-24T00:00:00Z</published>
<summary type="text">Improving Autistic Experiences in the Workplace: Key Factors and Actionable Steps
Nishith, Shruti; O’Brien, Amanda M.; Li, Cindy; Bungert, Lindsay; Oddis, Kyle; Riddle, Joseph; Gabrieli, John D. E.
Autistic adults have higher rates of unemployment and underemployment than non-autistic adults with and without disabilities. While previous work has highlighted factors specific to individuals and/or job sectors that serve as barriers or facilitators to autistic employment, the question of how to modify the workplace to best support autistic people remains under-researched. The present study utilized an ecological framework to investigate what workplace factors can be modified to improve autistic experiences and how these modifications may be enacted across different levels of workplace ecosystem to promote autistic success. Autistic participants (N = 85) across employment sectors provided quantitative ratings and written descriptions of positive and negative factors related to their workplace experiences. Quantitative and qualitative analyses were used to examine which factors and overarching principles most impact employment. Actionable strategies to modify these factors were derived from participant responses and validated by autistic collaborators and neuroinclusion experts. On average, participants rated task training as having the most positive, and mental health as having the most negative, impact on their employment. Participants described four themes (acceptance, communication, autonomy, accommodations) that can be embedded in the work environment to improve experiences. Steps to improve autistic employment that can be enacted by stakeholders across levels of the workplace experiences are provided. Autistic adults face multifaceted barriers to employment across levels of the workplace. Modifying the workplace itself, across multiple levels and stakeholders, may serve to improve autistic employment outcomes.
</summary>
<dc:date>2025-09-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Connectivity of Friends-and-Strangers Graphs on Complete Multipartite Graphs</title>
<link href="https://hdl.handle.net/1721.1/163971" rel="alternate"/>
<author>
<name>Zhu, Honglin</name>
</author>
<id>https://hdl.handle.net/1721.1/163971</id>
<updated>2025-11-25T06:36:39Z</updated>
<published>2024-12-31T00:00:00Z</published>
<summary type="text">The Connectivity of Friends-and-Strangers Graphs on Complete Multipartite Graphs
Zhu, Honglin
For simple graphs X and Y on n vertices, the friends-and-strangers graph FS ( X , Y ) is the graph whose vertex set consists of all bijections σ : V ( X ) → V ( Y ) , where two bijections σ and σ ′ are adjacent if and only if they agree on all but two adjacent vertices a , b ∈ V ( X ) such that σ ( a ) , σ ( b ) ∈ V ( Y ) are adjacent in Y. Resolving a conjecture of Wang, Lu, and Chen, we completely characterize the connectedness of FS ( X , Y ) when Y is a complete bipartite graph. We further extend this result to when Y is a complete multipartite graph. We also determine when FS ( X , Y ) has exactly two connected components where X is bipartite and Y is a complete bipartite graph.
</summary>
<dc:date>2024-12-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reducing Aerodynamic Interference Through Layout Optimization of Symmetrically Cambered Wingsails: A Comparative Study of In-Line and Parallel Configurations</title>
<link href="https://hdl.handle.net/1721.1/163970" rel="alternate"/>
<author>
<name>van Reen, Stephan</name>
</author>
<author>
<name>Lin, Jianfeng</name>
</author>
<author>
<name>Niu, Jiqiang</name>
</author>
<author>
<name>Sharpe, Peter</name>
</author>
<author>
<name>Li, Xiaodong</name>
</author>
<author>
<name>Yao, Hua-Dong</name>
</author>
<id>https://hdl.handle.net/1721.1/163970</id>
<updated>2025-11-25T06:37:30Z</updated>
<published>2025-10-16T00:00:00Z</published>
<summary type="text">Reducing Aerodynamic Interference Through Layout Optimization of Symmetrically Cambered Wingsails: A Comparative Study of In-Line and Parallel Configurations
van Reen, Stephan; Lin, Jianfeng; Niu, Jiqiang; Sharpe, Peter; Li, Xiaodong; Yao, Hua-Dong
Rigid wingsails are increasingly adopted for wind-assisted ship propulsion, with Symmetrically Cambered (SC) profiles identified as highly efficient for thrust generation. This study investigates installation layouts for multiple SC wingsails, focusing on aerodynamic interference that limits their performance. A fast 2D potential-flow panel method is employed and benchmarked against wind tunnel and 3D IDDES data. Two representative layouts are analyzed: triple-in-line (TL) and quad-in-parallel (QP). Layout optimization is performed using a genetic algorithm with distances between sails as design variables, constrained by the total installation span, at apparent wind angles (AWAs) of 60◦ , 90◦ , and 120◦ . Results show that thrust generation decreases progressively from upstream to downstream sails due to interference effects, with penalties of about 4–6% in the TL and up to 28% in the QP layout. The optimization improves performance only for the TL layout at 60◦ , while the QP layout shows negligible gains. Analysis of pressure distributions confirms that downstream sails suffer from reduced suction on the leading edge caused by upstream wakes. Overall, the TL layout demonstrates significantly higher aerodynamic reliability than the QP layout. These findings provide new insights into multi-sail configurations and highlight the importance of layout optimization in maximizing thrust efficiency.
</summary>
<dc:date>2025-10-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>A rapid experimental workflow for studying melt track scaling in laser powder bed fusion using high-precision metal template substrates</title>
<link href="https://hdl.handle.net/1721.1/163969" rel="alternate"/>
<author>
<name>Weissbach, Reimar</name>
</author>
<author>
<name>Penny, Ryan W.</name>
</author>
<author>
<name>Hart, A. J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163969</id>
<updated>2025-11-25T06:36:30Z</updated>
<published>2025-06-26T00:00:00Z</published>
<summary type="text">A rapid experimental workflow for studying melt track scaling in laser powder bed fusion using high-precision metal template substrates
Weissbach, Reimar; Penny, Ryan W.; Hart, A. J.
Development and qualification of process parameters in laser powder bed fusion (LPBF) involves many variables. At the outset of development, whether transferring known parameters to a new machine, or exploring a new material, single-track and single-layer experiments are a convenient means of down-selecting key variables and exploring parameter scaling behavior. We present an experimental workflow for single-layer LPBF experiments using high-precision metal template substrates, overcoming challenges with precision single-layer alignment in LPBF systems and enabling efficient processing and cross-sectional analysis. Templates are fabricated using chemical etching and machining, and are characterized using optical profilometry and X-ray transmission imaging of powder layers. Using the etched templates, a single-track parameter study is performed in SS316 including three powder layer thicknesses, and spanning common laser melting modes (lack-of-fusion, conduction, and keyhole mode). Analysis of melt track geometries using automated image processing allows a scaling law to be applied to define the process window, quantifying the amount of material added with increasing powder layer thickness. Single-track results are verified with raster scanning experiments, showing the potential to transfer single-track results to full LPBF builds.
</summary>
<dc:date>2025-06-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Augmented intelligence should be good for medicine, if medicine is to remain good for us</title>
<link href="https://hdl.handle.net/1721.1/163968" rel="alternate"/>
<author>
<name>Idan, Daphna</name>
</author>
<author>
<name>Celi, Leo A.</name>
</author>
<author>
<name>Einav, Sharon</name>
</author>
<author>
<name>Frenkel, Amit</name>
</author>
<id>https://hdl.handle.net/1721.1/163968</id>
<updated>2025-11-25T06:36:35Z</updated>
<published>2025-09-29T00:00:00Z</published>
<summary type="text">Augmented intelligence should be good for medicine, if medicine is to remain good for us
Idan, Daphna; Celi, Leo A.; Einav, Sharon; Frenkel, Amit
Throughout history, the medical community has failed to address health disparities. Augmented intelligence (AI) is poised to cement these structural inequities permanently. The need to establish a triage process that ensures fair and equitable access to medical care, and to consider all patient populations equally researchable, should not overshadow the need to learn how best to exploit AI for furthering medical fairness and equity despite resource limitations. Open discussion of the shortcomings of medical AI, approaching medical AI development, testing, and implementation from a critical ethical perspective, constant testing and analysis of AI outputs, and human oversight in the loop constitute only the first part of ensuring augmented intelligence tools are equitably robust and free of bias.
</summary>
<dc:date>2025-09-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design Principles and Impact of a Learning Analytics Dashboard: Evidence from a Randomized MOOC Experiment</title>
<link href="https://hdl.handle.net/1721.1/163967" rel="alternate"/>
<author>
<name>Borrella, Inma</name>
</author>
<author>
<name>Ponce-Cueto, Eva</name>
</author>
<id>https://hdl.handle.net/1721.1/163967</id>
<updated>2025-11-25T06:36:51Z</updated>
<published>2025-10-27T00:00:00Z</published>
<summary type="text">Design Principles and Impact of a Learning Analytics Dashboard: Evidence from a Randomized MOOC Experiment
Borrella, Inma; Ponce-Cueto, Eva
Learning Analytics Dashboards (LADs) are increasingly deployed to support self-regulated learning on online courses. Yet many existing dashboards lack strong theoretical grounding, contextual alignment, or actionable feedback, and some designs have been shown to inadvertently discourage learners through excessive social comparison or high inference costs. In this study, we designed and evaluated a LAD grounded in the COPES model of self-regulated learning and tailored to a credit-bearing Massive Open Online Course (MOOC) using a data-driven approach. We conducted a randomized controlled trial with 8745 learners, comparing a control group, a dashboard without feedback, and a dashboard with ARCS-framed actionable feedback. The results showed that the dashboard with feedback significantly increased learners&amp;rsquo; likelihood of verification (i.e., paying for the certification track), with mixed effects on engagement and no measurable impact on final grades. These findings suggest that dashboards are not uniformly beneficial: while feedback-supported LADs can enhance motivation and persistence, dashboards that lack interpretive support may impose cognitive burdens without improving outcomes. This study contributes to the literature on learning analytics by (1) articulating the design principles for theoretically and contextually grounded LADs and (2) providing experimental evidence on their impact in authentic MOOC settings.
</summary>
<dc:date>2025-10-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Effect of IL-17A and Combined Mechanical Injury on Meniscal Tissue Integrity In Vitro</title>
<link href="https://hdl.handle.net/1721.1/163966" rel="alternate"/>
<author>
<name>Ahrens, Greta</name>
</author>
<author>
<name>Gellhaus, Florian</name>
</author>
<author>
<name>Weitkamp, Jan-Tobias</name>
</author>
<author>
<name>Behrendt, Peter</name>
</author>
<author>
<name>Cossais, François</name>
</author>
<author>
<name>Rolauffs, Bernd</name>
</author>
<author>
<name>Grodzinsky, Alan J</name>
</author>
<author>
<name>Kurz, Bodo</name>
</author>
<id>https://hdl.handle.net/1721.1/163966</id>
<updated>2025-11-25T06:37:29Z</updated>
<published>2025-10-24T00:00:00Z</published>
<summary type="text">The Effect of IL-17A and Combined Mechanical Injury on Meniscal Tissue Integrity In Vitro
Ahrens, Greta; Gellhaus, Florian; Weitkamp, Jan-Tobias; Behrendt, Peter; Cossais, François; Rolauffs, Bernd; Grodzinsky, Alan J; Kurz, Bodo
Objectives: Meniscal integrity is crucial for knee joint stability and the prevention of osteoarthritis (OA) development. Recent studies suggested that mechanical overload and interleukin (IL)-17A may be important intertwined players in meniscal degeneration, but a direct impact of IL-17A on the meniscus has not been investigated. Therefore, the aim of this study was to analyze the effect of IL-17A on meniscal tissue with and without combined mechanical injury (MI). Methods: Meniscal explant disks (1 mm height, 3 mm diameter) were isolated from bovine menisci (preserving the native tibial superficial zone) and exposed to IL-17A [0–100 ng/mL] and/or MI (single compression, 50% strain, strain rate 1 mm/sec). After three days of incubation in a serum-free medium, the proteoglycan release (sGAG; DMMB assay), mRNA level of matrix-degrading enzymes (qRT-PCR), aggrecan degradation (NITEGE immunostaining), and cell death (histomorphometry of nuclear blebbing/apoptosis and condensed nuclei/unspecified cell death) were determined. Statistics: one- and two-way ANOVA with Tukey’s multiple comparisons or Kruskal– Wallis with post hoc testing. Results: IL-17A increased sGAG release in a dose-dependent significant manner. MI also induced the release of sGAG significantly, but the combination with IL-17A showed the highest levels. Both IL-17A and MI individually affected the mRNA levels for ADAMTS4 and MMP-13 slightly, but the combination of both particularly induced a significant increase in mRNA levels. Signals for the ADAMTS4-related aggrecan neoepitope NITEGE were elevated by IL-17A in superficial areas of the excised tissue and by MI in superficial and deeper areas. The combination of both stimuli intensified this signal further. MI increased the number of cells with condensed nuclei significantly and induced apoptosis in a small proportion of cells. IL-17A had no significant impact on the amount of condensed or apoptotic nuclei. Conclusions: Our findings emphasize an interaction between inflammatory cytokine IL-17A signaling and mechanical stress since IL17A induced matrix degeneration in meniscal tissue, which intensified in combination with a trauma. The latter might create a post-traumatic environment that promotes meniscal degeneration and subsequently osteoarthritis progression.
</summary>
<dc:date>2025-10-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Molecular hallmarks of excitatory and inhibitory neuronal resilience to Alzheimer’s disease</title>
<link href="https://hdl.handle.net/1721.1/163965" rel="alternate"/>
<author>
<name>Castanho, Isabel</name>
</author>
<author>
<name>Naderi Yeganeh, Pourya</name>
</author>
<author>
<name>Boix, Carles A.</name>
</author>
<author>
<name>Morgan, Sarah L.</name>
</author>
<author>
<name>Mathys, Hansruedi</name>
</author>
<author>
<name>Prokopenko, Dmitry</name>
</author>
<author>
<name>White, Bartholomew</name>
</author>
<author>
<name>Soto, Larisa M.</name>
</author>
<author>
<name>Pegoraro, Giulia</name>
</author>
<id>https://hdl.handle.net/1721.1/163965</id>
<updated>2025-11-25T06:36:38Z</updated>
<published>2025-10-01T00:00:00Z</published>
<summary type="text">Molecular hallmarks of excitatory and inhibitory neuronal resilience to Alzheimer’s disease
Castanho, Isabel; Naderi Yeganeh, Pourya; Boix, Carles A.; Morgan, Sarah L.; Mathys, Hansruedi; Prokopenko, Dmitry; White, Bartholomew; Soto, Larisa M.; Pegoraro, Giulia
Background A significant proportion of individuals maintain cognition despite extensive Alzheimer’s disease (AD) pathology, known as cognitive resilience. Understanding the molecular mechanisms that protect these individuals could reveal therapeutic targets for AD. Methods This study defines molecular and cellular signatures of cognitive resilience by integrating bulk RNA and single-cell transcriptomic data with genetics across multiple brain regions. We analyzed data from the Religious Order Study and the Rush Memory and Aging Project (ROSMAP), including bulk RNA sequencing (n = 631 individuals) and multiregional single-nucleus RNA sequencing (n = 48 individuals). Subjects were categorized into AD, resilient, and control based on β-amyloid and tau pathology, and cognitive status. We identified and prioritized protected cell populations using whole-genome sequencing-derived genetic variants, transcriptomic profiling, and cellular composition. Results Transcriptomics and polygenic risk analysis position resilience as an intermediate AD state. Only GFAP and KLF4 expression distinguished resilience from controls at tissue level, whereas differential expression of genes involved in nucleic acid metabolism and signaling differentiated AD and resilient brains. At the cellular level, resilience was characterized by broad downregulation of LINGO1 expression and reorganization of chaperone pathways, specifically downregulation of Hsp90 and upregulation of Hsp40, Hsp70, and Hsp110 families in excitatory neurons. MEF2C, ATP8B1, and RELN emerged as key markers of resilient neurons. Excitatory neuronal subtypes in the entorhinal cortex (ATP8B+ and MEF2Chigh) exhibited unique resilience signaling through activation of neurotrophin (BDNF-NTRK2, modulated by LINGO1) and angiopoietin (ANGPT2-TEK) pathways. MEF2C+ inhibitory neurons were over-represented in resilient brains, and the expression of genes associated with rare genetic variants revealed vulnerable somatostatin (SST) cortical interneurons that survive in AD resilience. The maintenance of excitatory-inhibitory balance emerges as a key characteristic of resilience. Conclusions We have defined molecular and cellular hallmarks of cognitive resilience, an intermediate state in the AD continuum. Resilience mechanisms include preserved neuronal function, balanced network activity, and activation of neurotrophic survival signaling. Specific excitatory neuronal populations appear to play a central role in mediating cognitive resilience, while a subset of vulnerable interneurons likely provides compensation against AD-associated hyperexcitability. This study offers a framework to leverage natural protective mechanisms to mitigate neurodegeneration and preserve cognition in AD.
</summary>
<dc:date>2025-10-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Nationwide Trends in Hospitalizations for Sudden Cardiac Arrest Before and During the COVID Outbreak</title>
<link href="https://hdl.handle.net/1721.1/163964" rel="alternate"/>
<author>
<name>Daoudi, Sarah</name>
</author>
<author>
<name>Furer, Ariel</name>
</author>
<author>
<name>John, Kevin</name>
</author>
<author>
<name>Chalhoub, Fadi</name>
</author>
<author>
<name>Chee, Jennifer</name>
</author>
<author>
<name>Infeld, Margaret</name>
</author>
<author>
<name>Elbaz-Greener, Gabby</name>
</author>
<author>
<name>Homoud, Munther</name>
</author>
<author>
<name>Udelson, James</name>
</author>
<author>
<name>Madias, Christopher</name>
</author>
<author>
<name>Rozen, Guy</name>
</author>
<id>https://hdl.handle.net/1721.1/163964</id>
<updated>2025-11-25T06:36:53Z</updated>
<published>2025-10-22T00:00:00Z</published>
<summary type="text">Nationwide Trends in Hospitalizations for Sudden Cardiac Arrest Before and During the COVID Outbreak
Daoudi, Sarah; Furer, Ariel; John, Kevin; Chalhoub, Fadi; Chee, Jennifer; Infeld, Margaret; Elbaz-Greener, Gabby; Homoud, Munther; Udelson, James; Madias, Christopher; Rozen, Guy
Background/Objectives: Sudden cardiac arrest (SCA) accounts for ~50% of cardiovascular mortality in the U.S. Cardiovascular complications are common in acute and post-acute COVID-19 infection. We aimed to examine nationwide trends in SCA-related hospitalizations in the United States before and during the COVID-19 outbreak. Methods: Using data from the National Inpatient Sample, we conducted a retrospective analysis of hospitalizations for SCA in the U.S. between 2016 and 2020. Sociodemographic and clinical characteristics and in-hospital mortality were compared between the pre-COVID (2016– 2019) and COVID (2020) eras. Multivariable analysis was performed to identify factors associated with mortality. Results: Among a weighted total of 153,100 SCA hospitalizations between 2016 and 2020, the median age was 65 years, 62.7% were male, and 66.6% were white. There was a trend towards fewer hospitalizations in 2020 compared to prior years (n = 28,585 vs. naverage = 32,129, p = 0.07). In-hospital mortality remained unchanged between the pre-COVID and COVID eras (47.7% vs. 47.3%, p = 0.66). Increased mortality was associated with female sex (OR: 1.21; 95% CI: 1.15–1.28; p &lt; 0.001), non-white race (OR: 1.24; 95% CI: 1.15–1.28; p &lt; 0.001), history of renal failure (OR: 1.08; 95% CI: 1.02–1.15; p = 0.007), and diabetes (OR: 1.32; 95% CI: 1.25–1.39; p &lt; 0.001). In 2020, 1.5% of the study population was diagnosed with COVID-19 infection, which was found to be independently associated with increased in-hospital mortality (OR: 1.57; 95% CI: 1.27–1.95; p &lt; 0.001). Conclusions: In 2020, there was a trend towards a decrease in hospitalizations for SCA, while COVID-19 infection was independently associated with higher in-hospital mortality among patients admitted with SCA.
</summary>
<dc:date>2025-10-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Biosensor development for single-cell detection of glucuronate</title>
<link href="https://hdl.handle.net/1721.1/163963" rel="alternate"/>
<author>
<name>Nash, Jennifer Kaczmarek</name>
</author>
<author>
<name>Prather, Kristala LJ</name>
</author>
<id>https://hdl.handle.net/1721.1/163963</id>
<updated>2025-11-25T06:36:58Z</updated>
<published>2023-06-16T00:00:00Z</published>
<summary type="text">Biosensor development for single-cell detection of glucuronate
Nash, Jennifer Kaczmarek; Prather, Kristala LJ
Recent work in biosensors has shown promise to enable high throughput searches through large genetic libraries. However, just as physiological limitations and lack of in-depth mechanistic knowledge can prevent us from achieving high titers in microbial systems; similar roadblocks can appear in the application of biosensors. Here, we characterized a previously developed transcription-factor (ExuR) based galacturonate biosensor for its other cognate ligand, glucuronate. Though we saw an ideal response to glucuronate from the biosensor in controlled and ideal experimental circumstances, these results began to deviate from a well-behaved system when we explored the application of the sensor to different MIOX homologs. Through modifications to circuit architecture and culture conditions, we were able to decrease this variation and use these more optimal conditions to apply the biosensor for the separation of two closely related MIOX homologs.
</summary>
<dc:date>2023-06-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Strategies in engineering sustainable biochemical synthesis through microbial systems</title>
<link href="https://hdl.handle.net/1721.1/163962" rel="alternate"/>
<author>
<name>Song, Yoseb</name>
</author>
<author>
<name>Prather, Kristala LJ</name>
</author>
<id>https://hdl.handle.net/1721.1/163962</id>
<updated>2025-11-22T03:15:33Z</updated>
<published>2024-08-01T00:00:00Z</published>
<summary type="text">Strategies in engineering sustainable biochemical synthesis through microbial systems
Song, Yoseb; Prather, Kristala LJ
Growing environmental concerns and the urgency to address climate change have increased demand for the development of sustainable alternatives to fossil-derived fuels and chemicals. Microbial systems, possessing inherent biosynthetic capabilities, present a promising approach for achieving this goal. This review discusses the coupling of systems and synthetic biology to enable the elucidation and manipulation of microbial phenotypes for the production of chemicals that can substitute for petroleum-derived counterparts and contribute to advancing green biotechnology. The integration of artificial intelligence with metabolic engineering to facilitate precise and data-driven design of biosynthetic pathways is also discussed, along with the identification of current limitations and proposition of strategies for optimizing biosystems, thereby propelling the field of chemical biology towards sustainable chemical production.
</summary>
<dc:date>2024-08-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, Office of the Vice Chancellor for Undergraduate and Graduate Education</title>
<link href="https://hdl.handle.net/1721.1/163961" rel="alternate"/>
<author>
<name>Darmofal, David</name>
</author>
<id>https://hdl.handle.net/1721.1/163961</id>
<updated>2025-11-22T03:18:43Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, Office of the Vice Chancellor for Undergraduate and Graduate Education
Darmofal, David
This report contains the following sections: Executive Summary, OVC Headquarters, Office of Admissions, Career Advising &amp; Professional Development, Office of Experiential Learning, Edgerton Center, PKG Public Service Center, Undergraduate Research Opportunities Program, Concourse, Experimental Study Group, Terrascope, Office of Graduate Education, International Students Office, Registrar’s Office, Air Force ROTC, Army ROTC, Navy ROTC, Student Financial Services, Teaching + Learning Lab, and Undergraduate Advising Center.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Covert reciprocals: a scope-based analysis of reciprocal alternations</title>
<link href="https://hdl.handle.net/1721.1/163960" rel="alternate"/>
<author>
<name>Wehbe, Jad</name>
</author>
<id>https://hdl.handle.net/1721.1/163960</id>
<updated>2026-04-14T03:24:27Z</updated>
<published>2025-09-30T00:00:00Z</published>
<summary type="text">Covert reciprocals: a scope-based analysis of reciprocal alternations
Wehbe, Jad
This paper argues that the class of predicates that participate in reciprocal alternations, like the seemingly 1-place predicate hug in Jane and Mary hugged, should in fact be analyzed as 2-place predicates with a covert reciprocal in object position. The main challenge for this analysis is that there are truth-conditional differences between covert reciprocals and their overt counterparts. Focusing on a few case studies, this paper will argue that these seemingly lexical differences can be reanalyzed in terms of scope, allowing the differences to be systematically predicted once appropriate scope restrictions on covert reciprocals are established. More specifically, I propose that covert reciprocals are simply reciprocals that have to be bound at the lowest possible scope position. I show that these seemingly 1-place predicates behave just like overt reciprocals, modulo the low-scope requirement, for example giving rise to homogeneity and non-maximality. I therefore conclude that in order to account systematically for these inferences, covert reciprocals (at least the case studies that the paper considers) must be treated as having the same LFs as low-scope overt reciprocals.
</summary>
<dc:date>2025-09-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Robust resonant anomaly detection with NPLM</title>
<link href="https://hdl.handle.net/1721.1/163959" rel="alternate"/>
<author>
<name>Grosso, Gaia</name>
</author>
<author>
<name>Sengupta, Debajyoti</name>
</author>
<author>
<name>Golling, Tobias</name>
</author>
<author>
<name>Harris, Philip</name>
</author>
<id>https://hdl.handle.net/1721.1/163959</id>
<updated>2026-04-14T03:24:26Z</updated>
<published>2025-09-28T00:00:00Z</published>
<summary type="text">Robust resonant anomaly detection with NPLM
Grosso, Gaia; Sengupta, Debajyoti; Golling, Tobias; Harris, Philip
In this study, we investigate the application of the New Physics Learning Machine (NPLM) algorithm as an alternative to the standard CWoLa method with Boosted Decision Trees (BDTs), particularly for scenarios with rare signal events. NPLM offers an end-to-end approach to anomaly detection and hypothesis testing by utilizing an in-sample evaluation of a binary classifier to estimate a log-density ratio, which can improve detection performance without prior assumptions on the signal model. We examine two approaches: (1) a end-to-end NPLM application in cases with reliable background modelling and (2) an NPLM-based classifier used for signal selection when accurate background modelling is unavailable, with subsequent performance enhancement through a hyper-test on multiple values of the selection threshold. Our findings show that NPLM-based methods outperform BDT-based approaches in detection performance, particularly in low signal injection scenarios, while significantly reducing epistemic variance due to hyperparameter choices. This work highlights the potential of NPLM for robust resonant anomaly detection in particle physics, setting a foundation for future methods that enhance sensitivity and consistency under signal variability.
</summary>
<dc:date>2025-09-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tackling the Cardio-Kidney-Metabolic Burden in Cancer</title>
<link href="https://hdl.handle.net/1721.1/163958" rel="alternate"/>
<author>
<name>Nahle, Tarek</name>
</author>
<author>
<name>Shah, Viraj</name>
</author>
<author>
<name>Kunhiraman, Harikrishnan H.</name>
</author>
<author>
<name>Makram, Omar M.</name>
</author>
<author>
<name>Ahmed, Ola</name>
</author>
<author>
<name>Yerraguntla, Sandeep</name>
</author>
<author>
<name>Gopu, Gaurav</name>
</author>
<author>
<name>Vy, Jenny</name>
</author>
<author>
<name>Singh, Shivam</name>
</author>
<author>
<name>Borse, Tanvi</name>
</author>
<author>
<name>Kalinsky, Kevin</name>
</author>
<author>
<name>Deswal, Anita</name>
</author>
<author>
<name>Sadler, Diego</name>
</author>
<author>
<name>Chitalia, Vipul</name>
</author>
<author>
<name>Weintraub, Neal L.</name>
</author>
<id>https://hdl.handle.net/1721.1/163958</id>
<updated>2025-11-22T03:15:06Z</updated>
<published>2025-09-15T00:00:00Z</published>
<summary type="text">Tackling the Cardio-Kidney-Metabolic Burden in Cancer
Nahle, Tarek; Shah, Viraj; Kunhiraman, Harikrishnan H.; Makram, Omar M.; Ahmed, Ola; Yerraguntla, Sandeep; Gopu, Gaurav; Vy, Jenny; Singh, Shivam; Borse, Tanvi; Kalinsky, Kevin; Deswal, Anita; Sadler, Diego; Chitalia, Vipul; Weintraub, Neal L.
Purpose of the Review This review aims to examine the clinical relevance of cardio-kidney-metabolic syndrome (CKMS) in oncology, highlighting its role as both a preexisting comorbidity and a consequence of cancer treatment. It aims to integrating CKMS staging into personalized cancer care. Recent Findings CKMS is a progressive syndrome marked by dysfunction across cardiovascular, renal, and metabolic systems. Cancer therapies—particularly hormonal agents, immune checkpoint inhibitors, and chemotherapeutics—can accelerate or reveal underlying CKMS through inflammatory and metabolic pathways. Early risk stratification based on CKMS stage enables more effective monitoring, referral, and therapeutic strategies. A stage-based, multidisciplinary approach tailored to cancer type and comorbidity burden is essential for optimizing outcomes. Summary With rising multimorbidity among cancer patients, recognizing and addressing CKMS is increasingly critical. Routine CKMS assessment in oncology offers a pathway for earlier intervention and potentially altering its course. A comprehensive, individualized care model based on CKS stage is necessary to mitigate CKMS-related complications and deliver high-quality, integrated cancer care.
</summary>
<dc:date>2025-09-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Initial checkout of the Psyche electric propulsion system</title>
<link href="https://hdl.handle.net/1721.1/163957" rel="alternate"/>
<author>
<name>Snyder, John S.</name>
</author>
<author>
<name>Kelly, Charles L.</name>
</author>
<author>
<name>Garner, Charles</name>
</author>
<author>
<name>Bradley, Nicholas</name>
</author>
<author>
<name>Johnson, Ian</name>
</author>
<author>
<name>Corey, Ron</name>
</author>
<author>
<name>Ream, Jodie B.</name>
</author>
<author>
<name>Weiss, Benjamin P.</name>
</author>
<id>https://hdl.handle.net/1721.1/163957</id>
<updated>2026-04-14T03:20:50Z</updated>
<published>2025-07-31T00:00:00Z</published>
<summary type="text">Initial checkout of the Psyche electric propulsion system
Snyder, John S.; Kelly, Charles L.; Garner, Charles; Bradley, Nicholas; Johnson, Ian; Corey, Ron; Ream, Jodie B.; Weiss, Benjamin P.
NASA’s Psyche spacecraft launched on October 13, 2023, and soon afterward the mission operations team began spacecraft initial checkout activities. For the electric propulsion system, the feed system and thruster gimbals were first prepared and then the rest of the subsystem completed an initial operations test during thruster bakeout. Thrust for each thruster was measured across the full range of operating powers and was in good agreement with pre-flight expectations. A weeklong test of the spacecraft and mission operations plan during thrusting activities was successful, but a thruster burn-in phenomenon was observed during full power operation that was longer than expected based on previous flight history. Data accumulated during the initial checkout activities shows that this burn-in behavior is different for each thruster and suggests that it is a result of the thruster discharge transitioning between two different plasma modes that can be mitigated by reducing discharge power and by adjusting the thruster magnet current. At the conclusion of the checkout activities, the subsystem had accumulated 357 h of thrusting operations while consuming 18.5 kg of propellant and was fully ready to begin the cruise phase of the mission.
</summary>
<dc:date>2025-07-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Derandomizing Logspace With a Small Shared Hard Drive</title>
<link href="https://hdl.handle.net/1721.1/163956" rel="alternate"/>
<author>
<name>Pyne, Edward</name>
</author>
<id>https://hdl.handle.net/1721.1/163956</id>
<updated>2026-04-14T03:24:25Z</updated>
<published>2025-09-22T00:00:00Z</published>
<summary type="text">Derandomizing Logspace With a Small Shared Hard Drive
Pyne, Edward
We obtain new catalytic algorithms for space-bounded derandomization. In the catalytic computation model introduced by (Buhrman, Cleve, Koucký, Loff, and Speelman STOC 2013), we are given a small worktape, and a larger catalytic tape that has an arbitrary initial configuration. We may edit this tape, but it must be exactly restored to its initial configuration at the completion of the computation. We prove that B P S P A C E [ S ] ⊆ C S P A C E [ S , S 2 ] where B P S P A C E [ S ] corresponds to randomized space S computation, and C S P A C E [ S , C ] corresponds to catalytic algorithms that use O(S) bits of workspace and O(C) bits of catalytic space. Previously, only B P S P A C E [ S ] ⊆ C S P A C E [ S , 2 O ( S ) ] was known. In fact, we prove a general tradeoff, that for every α ∈ [ 1 , 1.5 ] , B P S P A C E [ S ] ⊆ C S P A C E [ S α , S 3 - α ] . We do not use the algebraic techniques of prior work on catalytic computation. Instead, we develop an algorithm that branches based on if the catalytic tape is conditionally random, and instantiate this primitive in a recursive framework. Our result gives an alternate proof of the best known time-space tradeoff for B P S P A C E [ S ] , due to (Cai, Chakaravarthy, and van Melkebeek, Theory Comput. Sys. 2006). As a final application, we extend our results to solve search problems in C S P A C E [ S , S 2 ] . As far as we are aware, this constitutes the first study of search problems in the catalytic computing model.
</summary>
<dc:date>2025-09-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Center for Real Estate</title>
<link href="https://hdl.handle.net/1721.1/163955" rel="alternate"/>
<author>
<name>Geltner, David M</name>
</author>
<id>https://hdl.handle.net/1721.1/163955</id>
<updated>2025-11-22T03:17:40Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Center for Real Estate
Geltner, David M
This report contains the following sections: Strategic Planning Initiative; Education; Research Activities; Professional Education and Industry Interface; Membership; Alumni Outreach; Administration
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Appendix B: Enrollment Statistics, Fall 2003, Number of Minority Graduate Students by Course and Year</title>
<link href="https://hdl.handle.net/1721.1/163954" rel="alternate"/>
<author>
<name>MIT Registrar's Office</name>
</author>
<id>https://hdl.handle.net/1721.1/163954</id>
<updated>2025-11-22T03:17:13Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Appendix B: Enrollment Statistics, Fall 2003, Number of Minority Graduate Students by Course and Year
MIT Registrar's Office
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Appendix B: Enrollment Statistics, Fall 2003, Number of Minority Undergraduates by Course and Year</title>
<link href="https://hdl.handle.net/1721.1/163953" rel="alternate"/>
<author>
<name>MIT Registrar's Office</name>
</author>
<id>https://hdl.handle.net/1721.1/163953</id>
<updated>2025-11-22T03:16:55Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Appendix B: Enrollment Statistics, Fall 2003, Number of Minority Undergraduates by Course and Year
MIT Registrar's Office
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Vice President for Human Resources and Equal Opportunity Officer</title>
<link href="https://hdl.handle.net/1721.1/163952" rel="alternate"/>
<author>
<name>Avakian, Laura</name>
</author>
<author>
<name>Lima, Philip</name>
</author>
<author>
<name>Foley, Shawn</name>
</author>
<author>
<name>Roberts, Barbara</name>
</author>
<author>
<name>Weiss, Ellen</name>
</author>
<author>
<name>Jablon, Barbara</name>
</author>
<author>
<name>Paulding, Claire</name>
</author>
<author>
<name>Culver, Kande</name>
</author>
<author>
<name>Pierce, Marianna</name>
</author>
<author>
<name>Gray, Margaret Ann</name>
</author>
<author>
<name>Williams, Wendy</name>
</author>
<author>
<name>Jacobs, Annette</name>
</author>
<author>
<name>Friscino, Deborah</name>
</author>
<author>
<name>Murray, Mary</name>
</author>
<author>
<name>O’Keefe, Eileen</name>
</author>
<author>
<name>Joyce, Shelagh</name>
</author>
<author>
<name>Wattendorf,  Maryann</name>
</author>
<author>
<name>Simpson, Rae</name>
</author>
<author>
<name>Simons, Kathy</name>
</author>
<id>https://hdl.handle.net/1721.1/163952</id>
<updated>2025-11-22T03:17:47Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Vice President for Human Resources and Equal Opportunity Officer
Avakian, Laura; Lima, Philip; Foley, Shawn; Roberts, Barbara; Weiss, Ellen; Jablon, Barbara; Paulding, Claire; Culver, Kande; Pierce, Marianna; Gray, Margaret Ann; Williams, Wendy; Jacobs, Annette; Friscino, Deborah; Murray, Mary; O’Keefe, Eileen; Joyce, Shelagh; Wattendorf,  Maryann; Simpson, Rae; Simons, Kathy
This report contains the following sections: Highlights of AY2004; Labor and Employee Relations Issues; Staff Diversity, Affirmative Action, and Equal Opportunity Management Team; Benefits Services; Disabilities Services Office; Retirement Programs Office; Compensation; Human Resources Information Systems; MIT Rewards and Recognition; Labor and Employee Relations; Organization and Employee Development; Organization Development Services; Center for Career Planning at MIT; Professional Development Programs; Staffing Services; MIT Medical; Center for Work, Family &amp; Personal Life
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Operations: Environmental Programs Office and Environment, Health, and Safety Office</title>
<link href="https://hdl.handle.net/1721.1/163951" rel="alternate"/>
<author>
<name>Keith, Jamie Lewis</name>
</author>
<author>
<name>Van Schalkwyk, William</name>
</author>
<author>
<name>DiBerardinis, Lou</name>
</author>
<id>https://hdl.handle.net/1721.1/163951</id>
<updated>2025-11-22T03:18:23Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Operations: Environmental Programs Office and Environment, Health, and Safety Office
Keith, Jamie Lewis; Van Schalkwyk, William; DiBerardinis, Lou
This report contains the following sections: Highlights; Positive EHS Initiatives and Collaborations; Communications, Outreach, and Awareness; Security and Emergency Preparedness Programs; Regulatory Interactions
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Appendix C: Personnel Changes</title>
<link href="https://hdl.handle.net/1721.1/163950" rel="alternate"/>
<author>
<name>MIT Registrar's Office</name>
</author>
<id>https://hdl.handle.net/1721.1/163950</id>
<updated>2025-11-22T03:17:46Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Appendix C: Personnel Changes
MIT Registrar's Office
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Association of Alumni and Alumnae of MIT</title>
<link href="https://hdl.handle.net/1721.1/163949" rel="alternate"/>
<author>
<name>Garvin HM, Elizabeth A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163949</id>
<updated>2025-11-22T03:16:50Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Association of Alumni and Alumnae of MIT
Garvin HM, Elizabeth A.
This report contains the following sections: By the Numbers; Organizational Change; Special Initiatives; The Alumni Fund; Fund Staff Restructuring; Responsibilities and Goals; Alumni Fund Strategic Initiatives; Fund Results; MIT Capital Campaign; Alumni Activities; Alumni Clubs and Regional Programs; Affinity Groups; Tech Reunions and Class Programs; Enterprise Forum; MIT Parents Association; Student and Young Alumni Program; Alumni Education; Online Services; Alumni Career Services; Travel Program; Volunteers, Leadership, and Governance; Association Board of Directors; National Selection Committee; National Boards and Directors; Alumni Leadership Conference; Association Volunteer Awards; Communications Department; Web and Electronic Communications; Operations and Information Systems; Web-Based Systems Achievements; Office of Records; Process Improvements; Personnel and Operations Update; Association Staff; Renovations;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Operations: Senior Counsel’s Office</title>
<link href="https://hdl.handle.net/1721.1/163948" rel="alternate"/>
<author>
<name>Keith, Jamie Lewis</name>
</author>
<id>https://hdl.handle.net/1721.1/163948</id>
<updated>2025-11-22T03:18:03Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Operations: Senior Counsel’s Office
Keith, Jamie Lewis
This report contains the following sections: Highlights; Serving Education and the Nation through Diversity; Service in the Post-9/11 Environment; Supporting Human Resources Management; Supporting Research and Other Compliance Initiatives; Risk Management and Litigation;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Student Support Services</title>
<link href="https://hdl.handle.net/1721.1/163947" rel="alternate"/>
<author>
<name>Simonis, Jackie</name>
</author>
<author>
<name>Henderson, Arnold, Jr.</name>
</author>
<author>
<name>Randolph, Robert M.</name>
</author>
<id>https://hdl.handle.net/1721.1/163947</id>
<updated>2025-11-22T03:17:53Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Student Support Services
Simonis, Jackie; Henderson, Arnold, Jr.; Randolph, Robert M.
This report contains the following sections: Counseling and Support Services; Religious Life at MIT
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Student Life Programs</title>
<link href="https://hdl.handle.net/1721.1/163946" rel="alternate"/>
<author>
<name>Baker, Barbara A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163946</id>
<updated>2025-11-22T03:18:10Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Student Life Programs
Baker, Barbara A.
This report contains the following sections: Summary Statement; Highlights of the Year; New Initiatives; Summary of Staffing Changes
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Housing</title>
<link href="https://hdl.handle.net/1721.1/163945" rel="alternate"/>
<author>
<name>Nilsson, Karen A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163945</id>
<updated>2025-11-22T03:18:10Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Housing
Nilsson, Karen A.
This report contains the following sections: Summary Statement; Highlights of the Year; New Initiatives; Housing Staffing Changes
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Administrative Services</title>
<link href="https://hdl.handle.net/1721.1/163944" rel="alternate"/>
<author>
<name>Capone, Laura</name>
</author>
<author>
<name>Salamone, Frank</name>
</author>
<id>https://hdl.handle.net/1721.1/163944</id>
<updated>2025-11-22T03:18:22Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Administrative Services
Capone, Laura; Salamone, Frank
This report contains the following sections: Summary Statement; Highlights of the Year; New Initiatives; Summary of Staffing Changes
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Dean for Student Life</title>
<link href="https://hdl.handle.net/1721.1/163943" rel="alternate"/>
<author>
<name>Benedict, Larry G.</name>
</author>
<id>https://hdl.handle.net/1721.1/163943</id>
<updated>2025-11-22T03:17:54Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Dean for Student Life
Benedict, Larry G.
This report contains the following sections: Accomplishments;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Edgerton Center</title>
<link href="https://hdl.handle.net/1721.1/163942" rel="alternate"/>
<author>
<name>Vandiver, J. Kim</name>
</author>
<id>https://hdl.handle.net/1721.1/163942</id>
<updated>2025-11-22T03:18:20Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Edgerton Center
Vandiver, J. Kim
This report contains the following sections: Service Learning; Curricular Initiative for Development Design; IDEAS Competition; Ongoing Programs; Staff Changes
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Graduate Student Council</title>
<link href="https://hdl.handle.net/1721.1/163941" rel="alternate"/>
<author>
<name>Singh, Barun</name>
</author>
<author>
<name>Hernandez, Hector</name>
</author>
<author>
<name>Wong, Lucy</name>
</author>
<author>
<name>Villacorta,  Virgilio</name>
</author>
<id>https://hdl.handle.net/1721.1/163941</id>
<updated>2025-11-22T03:16:53Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Graduate Student Council
Singh, Barun; Hernandez, Hector; Wong, Lucy; Villacorta,  Virgilio
This report contains the following sections: Graduate Student Income and Expenses; Housing, Safety, and Transportation; New Groups and Projects; Other Initiatives and Programs; Collaborations; Historic Events and Activities;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Chancellor</title>
<link href="https://hdl.handle.net/1721.1/163940" rel="alternate"/>
<author>
<name>Clay, Phillip</name>
</author>
<id>https://hdl.handle.net/1721.1/163940</id>
<updated>2025-11-22T03:17:25Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Chancellor
Clay, Phillip
This report contains the following sections: Highlights; Other Areas; The Cambridge–MIT Institute; The MIT–Ford Alliance; Faculty Vote on Reserve Officers’ Training Corps;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, George R. Wallace, Jr., Astrophysical Observatory</title>
<link href="https://hdl.handle.net/1721.1/163939" rel="alternate"/>
<author>
<name>Elliot, James L.</name>
</author>
<id>https://hdl.handle.net/1721.1/163939</id>
<updated>2025-11-22T03:17:15Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, George R. Wallace, Jr., Astrophysical Observatory
Elliot, James L.
This report contains the following sections: Facilities; Research and Student Work;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Chemistry</title>
<link href="https://hdl.handle.net/1721.1/163938" rel="alternate"/>
<author>
<name>Lippard, Stephen J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163938</id>
<updated>2025-11-22T03:18:00Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Chemistry
Lippard, Stephen J.
This report contains the following sections: Major Faculty Awards and Honors; Infrastructure Developments; Education; Graduate Student Awards and Honors; Named Lectureships; Selected Research Highlights;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Dean, Department of Biology</title>
<link href="https://hdl.handle.net/1721.1/163937" rel="alternate"/>
<author>
<name>Kaiser, Chris A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163937</id>
<updated>2025-11-22T03:16:56Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Dean, Department of Biology
Kaiser, Chris A.
This report contains the following sections: Educational Activities; Student Awards; Biology Department Awards; Degrees; Research; Personnel; Faculty Awards;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Dean, School of Science</title>
<link href="https://hdl.handle.net/1721.1/163936" rel="alternate"/>
<author>
<name>Silbey, Robert J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163936</id>
<updated>2025-11-22T03:17:59Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Dean, School of Science
Silbey, Robert J.
This report contains the following sections: New Initiatives; Building and Strengthening a Diverse Community; Faculty Awards; Staff Awards; Academic Program Statistics; Fundraising; Research Volume
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Program in Women's Studies</title>
<link href="https://hdl.handle.net/1721.1/163935" rel="alternate"/>
<author>
<name>Wood, Elizabeth</name>
</author>
<id>https://hdl.handle.net/1721.1/163935</id>
<updated>2025-11-22T03:18:14Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Program in Women's Studies
Wood, Elizabeth
This report contains the following sections: Program Administration, Curriculum and Faculty Development, Programming Highlights 2003–2004, Research, Publications, and Service; Affirmative Action Goals and Successes; Future Plans
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Literature</title>
<link href="https://hdl.handle.net/1721.1/163934" rel="alternate"/>
<author>
<name>Donaldson, Peter S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163934</id>
<updated>2025-11-22T03:17:16Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Literature
Donaldson, Peter S.
This report contains the following sections: Highlights of the Year; Academic Program and Student Enrollment; Research and Publication; Conferences and Invited Addresses; Electronic Projects and Sponsored Research; Service and Committees;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, History</title>
<link href="https://hdl.handle.net/1721.1/163933" rel="alternate"/>
<author>
<name>Ritvo, Harriet</name>
</author>
<id>https://hdl.handle.net/1721.1/163933</id>
<updated>2025-11-22T03:17:26Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, History
Ritvo, Harriet
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Foreign Languages and Literatures</title>
<link href="https://hdl.handle.net/1721.1/163932" rel="alternate"/>
<author>
<name>Garrels, Elizabeth J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163932</id>
<updated>2025-11-22T03:17:19Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Foreign Languages and Literatures
Garrels, Elizabeth J.
This report contains the following sections: Highlights of the Year; Research and Publications; Conferences and Presentations; MIT Service and Enrollments;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Terrascope</title>
<link href="https://hdl.handle.net/1721.1/163931" rel="alternate"/>
<author>
<name>Hodges, Kip</name>
</author>
<author>
<name>Chisholm, Penny</name>
</author>
<id>https://hdl.handle.net/1721.1/163931</id>
<updated>2025-11-22T03:17:58Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Terrascope
Hodges, Kip; Chisholm, Penny
This report contains the following sections: Program Highlights; New Developments;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Program in Polymer Science and Technology</title>
<link href="https://hdl.handle.net/1721.1/163930" rel="alternate"/>
<author>
<name>McKinley, Gareth H.</name>
</author>
<id>https://hdl.handle.net/1721.1/163930</id>
<updated>2025-11-22T03:17:02Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Program in Polymer Science and Technology
McKinley, Gareth H.
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Lemelson–MIT Program</title>
<link href="https://hdl.handle.net/1721.1/163929" rel="alternate"/>
<author>
<name>Finn, Kristin</name>
</author>
<id>https://hdl.handle.net/1721.1/163929</id>
<updated>2025-11-22T03:17:41Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Lemelson–MIT Program
Finn, Kristin
This report contains the following sections: The Invention Study: Workshops and Assembly; Annual Invention Awards; Outreach Activities and Events;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Deshpande Center for Technological Innovation</title>
<link href="https://hdl.handle.net/1721.1/163928" rel="alternate"/>
<author>
<name>Holly, Krisztina</name>
</author>
<id>https://hdl.handle.net/1721.1/163928</id>
<updated>2025-11-22T03:17:24Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Deshpande Center for Technological Innovation
Holly, Krisztina
This report contains the following sections: Highlights; Deshpande Grant Awards; Innovation Grants; Catalyst Program; Deshpande Center Events; Administrative Changes
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Nuclear Engineering</title>
<link href="https://hdl.handle.net/1721.1/163927" rel="alternate"/>
<author>
<name>Hutchinson, Ian H.</name>
</author>
<id>https://hdl.handle.net/1721.1/163927</id>
<updated>2025-11-22T03:17:20Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Nuclear Engineering
Hutchinson, Ian H.
This report contains the following sections: Undergraduate Program; Graduate Program; Faculty Awards, Honors, and Activities; Research; Student Awards and Activities;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Chemical Engineering</title>
<link href="https://hdl.handle.net/1721.1/163926" rel="alternate"/>
<author>
<name>Armstrong, Robert C.</name>
</author>
<author>
<name>Rutledge, Gregory C.</name>
</author>
<id>https://hdl.handle.net/1721.1/163926</id>
<updated>2025-11-22T03:17:12Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Chemical Engineering
Armstrong, Robert C.; Rutledge, Gregory C.
This report contains the following sections: Undergraduate Education; Graduate Education; Faculty Notes; Research Highlights; Annual Lectures, Seminars, and Symposium; Departmental Awards;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Aeronautics and Astronautics</title>
<link href="https://hdl.handle.net/1721.1/163925" rel="alternate"/>
<author>
<name>Harris, Wesley</name>
</author>
<id>https://hdl.handle.net/1721.1/163925</id>
<updated>2025-11-22T03:18:19Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Aeronautics and Astronautics
Harris, Wesley
This report contains the following sections: Undergraduate Awards; Faculty Awards; Staff Awards; Communication for Challenging Environments; Complex Systems Research Lab; Embedded Systems Laboratory; System-on-Chip Design Approaches; Verification and Validation; Operating System Design; Man-Vehicle Laboratory; Massachusetts Space Grant Consortium; Space Systems Laboratory; Systems Analysis Tools (Professor David Miller); Generalized Information Network Analysis; Dynamics, Optics, Controls, and Structures; Uncertainty Propagation in System Modeling; Spaceflight Dynamics and Control Technologies;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Urban Studies and Planning</title>
<link href="https://hdl.handle.net/1721.1/163924" rel="alternate"/>
<author>
<name>Vale, Lawrence J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163924</id>
<updated>2025-11-22T03:17:32Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Urban Studies and Planning
Vale, Lawrence J.
This report contains the following sections: Progress on Departmental Priorities; Faculty Achievements; DUSP’s Contribution to MIT–Wide Efforts; Research and Teaching on Urban Planning; City Design and Development; Environmental Policy Group; Housing Community and Economic Development; International Development and Regional Planning; Graduate Degree Program Enrollment and Activities; Undergraduate Program Activities; Awards; Outreach to Alumni; International Connection; Community Partnerships;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Program in Media Arts and Sciences</title>
<link href="https://hdl.handle.net/1721.1/163923" rel="alternate"/>
<author>
<name>Mitchell, William J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163923</id>
<updated>2025-11-22T03:18:15Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Program in Media Arts and Sciences
Mitchell, William J.
This report contains the following sections: Education; Faculty and Staff; Students
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Architecture</title>
<link href="https://hdl.handle.net/1721.1/163922" rel="alternate"/>
<author>
<name>Anderson, Stanford</name>
</author>
<id>https://hdl.handle.net/1721.1/163922</id>
<updated>2025-11-22T03:17:42Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Architecture
Anderson, Stanford
This report contains the following sections: Architectural Design; Building Technology; History, Theory, and Criticism; Computation; Undergraduate Program; Aga Khan Program for Islamic Architecture; Department of Architecture Enrollments;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Museum Loan Network</title>
<link href="https://hdl.handle.net/1721.1/163921" rel="alternate"/>
<author>
<name>Gross, Lori</name>
</author>
<id>https://hdl.handle.net/1721.1/163921</id>
<updated>2025-11-22T03:17:09Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Museum Loan Network
Gross, Lori
This report contains the following sections: Program Development; Website; Press and Promotion; Grants; Future Plans; Personnel Changes
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Francis Bitter Magnet Laboratory</title>
<link href="https://hdl.handle.net/1721.1/163920" rel="alternate"/>
<author>
<name>Griffin, Robert G.</name>
</author>
<id>https://hdl.handle.net/1721.1/163920</id>
<updated>2025-11-22T03:18:17Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Francis Bitter Magnet Laboratory
Griffin, Robert G.
This report contains the following sections: Research Activities; Facilities; Education and Personnel; Future Plans;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Broad Institute</title>
<link href="https://hdl.handle.net/1721.1/163919" rel="alternate"/>
<author>
<name>Lander, Eric S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163919</id>
<updated>2025-11-22T03:17:34Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Broad Institute
Lander, Eric S.
This report contains the following sections: Mission; Research; Scientific Programs; Faculty; Core Members; Associate Members; Facility
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Center for Biomedical Engineering</title>
<link href="https://hdl.handle.net/1721.1/163918" rel="alternate"/>
<author>
<name>Grodzinsky, Alan J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163918</id>
<updated>2025-11-22T03:16:59Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Center for Biomedical Engineering
Grodzinsky, Alan J.
This report contains the following sections: Major Research Thrust Areas; Core Facilities in 500 Technology Square; Major New Initiatives;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, MIT OpenCourseWare</title>
<link href="https://hdl.handle.net/1721.1/163917" rel="alternate"/>
<author>
<name>Margulies, Anne</name>
</author>
<id>https://hdl.handle.net/1721.1/163917</id>
<updated>2025-11-22T03:17:38Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, MIT OpenCourseWare
Margulies, Anne
This report contains the following sections: Achievements; Publication Process; Organization; Technology; Communications; Evaluation; Awards; Finances and Funding; Personnel Information
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Ombuds Office</title>
<link href="https://hdl.handle.net/1721.1/163916" rel="alternate"/>
<author>
<name>Robinson, Toni P.</name>
</author>
<author>
<name>Rowe, Mary P.</name>
</author>
<id>https://hdl.handle.net/1721.1/163916</id>
<updated>2025-11-22T03:18:00Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Ombuds Office
Robinson, Toni P.; Rowe, Mary P.
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Appendix B: Enrollment Statistics, Fall 2003, Number of Women Students by Course and Year</title>
<link href="https://hdl.handle.net/1721.1/163915" rel="alternate"/>
<author>
<name>MIT Registrar's Office</name>
</author>
<id>https://hdl.handle.net/1721.1/163915</id>
<updated>2025-11-22T03:18:22Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Appendix B: Enrollment Statistics, Fall 2003, Number of Women Students by Course and Year
MIT Registrar's Office
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Treasurer of the Corporation</title>
<link href="https://hdl.handle.net/1721.1/163914" rel="alternate"/>
<author>
<name>Bufferd, Allan S.</name>
</author>
<author>
<name>Stone,  Theresa M.</name>
</author>
<id>https://hdl.handle.net/1721.1/163914</id>
<updated>2025-11-22T03:18:01Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Treasurer of the Corporation
Bufferd, Allan S.; Stone,  Theresa M.
This report contains the following sections: Investment Committee
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Finance: Office of the Controller</title>
<link href="https://hdl.handle.net/1721.1/163913" rel="alternate"/>
<author>
<name>Morgan, James L.</name>
</author>
<id>https://hdl.handle.net/1721.1/163913</id>
<updated>2025-11-22T03:17:28Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Finance: Office of the Controller
Morgan, James L.
This report contains the following sections: Highlights; Accounts Payable; Institute and Enterprise Reporting; Insurance Office; Property Office; Lincoln Fiscal Office; Business Process Changes; Buy/Pay; Payroll; Travel; Institute and Enterprise Reporting; Cashier; Representative Metrics;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Finance: Office of Budget and Financial Planning</title>
<link href="https://hdl.handle.net/1721.1/163912" rel="alternate"/>
<author>
<name>Ruiz, Israel</name>
</author>
<author>
<name>Warner, Margaret</name>
</author>
<id>https://hdl.handle.net/1721.1/163912</id>
<updated>2025-11-22T03:17:45Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Finance: Office of Budget and Financial Planning
Ruiz, Israel; Warner, Margaret
This report contains the following sections: Current Goals and Objectives; SAPBUD: Budgeting in SAP; Business and Organizational Modeling; Stochastic Financial Planning; Capital Planning and Budgeting Model Development; Accomplishment; Administration Initiatives; Future Plans; Personnel Information
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Finance: Audit Division</title>
<link href="https://hdl.handle.net/1721.1/163911" rel="alternate"/>
<author>
<name>Fisher, Deborah L.</name>
</author>
<id>https://hdl.handle.net/1721.1/163911</id>
<updated>2025-11-22T03:17:37Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Finance: Audit Division
Fisher, Deborah L.
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Executive Vice President</title>
<link href="https://hdl.handle.net/1721.1/163910" rel="alternate"/>
<author>
<name>Curry, John R.</name>
</author>
<id>https://hdl.handle.net/1721.1/163910</id>
<updated>2025-11-22T03:18:24Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Executive Vice President
Curry, John R.
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Enterprise Services</title>
<link href="https://hdl.handle.net/1721.1/163909" rel="alternate"/>
<author>
<name>Graham, Louis W., Jr.</name>
</author>
<author>
<name>Walsh, Phillip J.</name>
</author>
<author>
<name>Berlin, Richard D.</name>
</author>
<author>
<name>Dimond, Steven M.</name>
</author>
<author>
<name>Fitzgerald, Michael</name>
</author>
<author>
<name>Michaud, Daniel</name>
</author>
<author>
<name>Brutti, Larry</name>
</author>
<author>
<name>Dimond, Steven M.</name>
</author>
<id>https://hdl.handle.net/1721.1/163909</id>
<updated>2025-11-22T03:17:26Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Enterprise Services
Graham, Louis W., Jr.; Walsh, Phillip J.; Berlin, Richard D.; Dimond, Steven M.; Fitzgerald, Michael; Michaud, Daniel; Brutti, Larry; Dimond, Steven M.
This report contains the following sections: Audio Visual Services; Campus Activities Complex; Campus Dining; Copy Technology Centers; MIT Endicott House; MIT Card Office; Parking and Transportation; TechCASH
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Appendix B: Enrollment Statistics, Fall 2003, Number of International Students by Course and Year</title>
<link href="https://hdl.handle.net/1721.1/163908" rel="alternate"/>
<author>
<name>MIT Registrar's Office</name>
</author>
<id>https://hdl.handle.net/1721.1/163908</id>
<updated>2025-11-22T03:18:16Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Appendix B: Enrollment Statistics, Fall 2003, Number of International Students by Course and Year
MIT Registrar's Office
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, Appendix B: Enrollment Statistics, Fall 2003, Number of Students by Course and Year</title>
<link href="https://hdl.handle.net/1721.1/163907" rel="alternate"/>
<author>
<name>MIT Registrar's Office</name>
</author>
<id>https://hdl.handle.net/1721.1/163907</id>
<updated>2025-11-22T03:17:56Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, Appendix B: Enrollment Statistics, Fall 2003, Number of Students by Course and Year; Report to the President for year ended June 30, 2004, Appendix B: Enrollment Statistics, Fall 2003, Number of Students by Course and Year
MIT Registrar's Office
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Appendix A: Degrees Awarded 2003-2004</title>
<link href="https://hdl.handle.net/1721.1/163906" rel="alternate"/>
<author>
<name>MIT Registrar's Office</name>
</author>
<id>https://hdl.handle.net/1721.1/163906</id>
<updated>2025-11-22T03:17:06Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Appendix A: Degrees Awarded 2003-2004
MIT Registrar's Office
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Operations: MIT Police</title>
<link href="https://hdl.handle.net/1721.1/163905" rel="alternate"/>
<author>
<name>DiFava, John</name>
</author>
<id>https://hdl.handle.net/1721.1/163905</id>
<updated>2025-11-22T03:18:25Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Operations: MIT Police
DiFava, John
This report contains the following sections: Patrol Division; Professional Standards; Community Policing; Criminal Activity; Devpartment Highlights
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Office of Student Discipline</title>
<link href="https://hdl.handle.net/1721.1/163904" rel="alternate"/>
<author>
<name>Tyrell, Steven</name>
</author>
<id>https://hdl.handle.net/1721.1/163904</id>
<updated>2025-11-22T03:17:00Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Office of Student Discipline
Tyrell, Steven
This report contains the following sections: Summary Statement; Highlights of the Year; New Initiatives; Summary of Staffing Changes
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Office of Academic Services</title>
<link href="https://hdl.handle.net/1721.1/163903" rel="alternate"/>
<author>
<name>Vandiver, J. Kim</name>
</author>
<id>https://hdl.handle.net/1721.1/163903</id>
<updated>2025-11-22T03:18:12Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Office of Academic Services
Vandiver, J. Kim
This report contains the following sections: Academic Information and Communication; Academic Resource Center; Faculty and Alumni Support; Staffing Changes
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Cambridge–MIT Institute</title>
<link href="https://hdl.handle.net/1721.1/163902" rel="alternate"/>
<author>
<name>Crawley, Ed</name>
</author>
<id>https://hdl.handle.net/1721.1/163902</id>
<updated>2025-11-22T03:18:04Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Cambridge–MIT Institute
Crawley, Ed
This report contains the following sections: Noteworthy Events; Educational Programs; Research Programs and Industry; Special Interest Groups; Knowledge Exchange Activities; Future Plans;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Operations: Facilities</title>
<link href="https://hdl.handle.net/1721.1/163901" rel="alternate"/>
<author>
<name>Sirianni, Victoria</name>
</author>
<id>https://hdl.handle.net/1721.1/163901</id>
<updated>2025-11-22T03:17:40Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Operations: Facilities
Sirianni, Victoria
This report contains the following sections: Infrastructure Renewal; Shared Services Center; Client Orientation; Collaboration; Sustainability; Accountability; Professionalism; Capital Projects; Design and Construction Services; Continuation of Project Controls and Information Tracking Efforts; Finance and Accounting; Operations; Utilities; Administration; Information Technology; Personnel Changes;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Community Development and Substance Abuse Programs</title>
<link href="https://hdl.handle.net/1721.1/163900" rel="alternate"/>
<author>
<name>Trujillo, Daniel A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163900</id>
<updated>2025-11-22T03:17:39Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Community Development and Substance Abuse Programs
Trujillo, Daniel A.
This report contains the following sections: Summary Statement; Highlights of the Year; New Initiatives; Summary of Staffing Changes
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Experimental Study Group</title>
<link href="https://hdl.handle.net/1721.1/163899" rel="alternate"/>
<author>
<name>Slocum, Alexander</name>
</author>
<author>
<name>Dourmashkin, Peter</name>
</author>
<author>
<name>Sweet, Holly</name>
</author>
<id>https://hdl.handle.net/1721.1/163899</id>
<updated>2025-11-22T03:17:04Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Experimental Study Group
Slocum, Alexander; Dourmashkin, Peter; Sweet, Holly
This report contains the following sections: Student Statistics; Staff and Faculty; Academic Initiatives; Awards; Alumni Involvement; Future Developments;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Physics</title>
<link href="https://hdl.handle.net/1721.1/163898" rel="alternate"/>
<author>
<name>Kastner, Marc</name>
</author>
<id>https://hdl.handle.net/1721.1/163898</id>
<updated>2025-11-22T03:17:12Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Physics
Kastner, Marc
This report contains the following sections: Honors and Awards; Education; Diversity; Pappalardo Fellowships in Physics; Research Highlights;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Center for International Studies</title>
<link href="https://hdl.handle.net/1721.1/163897" rel="alternate"/>
<author>
<name>Samuels, Richard J.</name>
</author>
<author>
<name>Van Evera, Stephen</name>
</author>
<author>
<name>Makinson, Carolyn</name>
</author>
<id>https://hdl.handle.net/1721.1/163897</id>
<updated>2025-11-22T03:18:21Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Center for International Studies
Samuels, Richard J.; Van Evera, Stephen; Makinson, Carolyn
This report contains the following sections: MIT Security Studies Program; MIT International Science and Technology Initiative; OpenCourseWare; MIT Mexico Program; HASS Minor in Applied International Studies; Program on Human Rights and Justice; The Inter-University Committee on International Migration; The Inter-University Initiative on Humanitarian Studies and Field Practice; Political Economy and Technology Policy Program; Crosscutting Working Groups; Seminar XXI—Outreach to the Washington Policy Community; Public Programs; Seminars, Colloquia, Workshops, and Conferences; Grant Programs; Publications; Personnel; CIS Affirmative Action Goals and Successes;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Singapore–MIT Alliance</title>
<link href="https://hdl.handle.net/1721.1/163896" rel="alternate"/>
<author>
<name>Patera, Anthony T.</name>
</author>
<id>https://hdl.handle.net/1721.1/163896</id>
<updated>2025-11-22T03:17:33Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Singapore–MIT Alliance
Patera, Anthony T.
This report contains the following sections: Partnership; Management Structure; Summer Conference; Distance Learning; Entering Class; Noteworthy Events in 2003; Innovation in Manufacturing Systems and Technology; Molecular Engineering of Biological and Chemical Systems; Computer Science; Benefits and Goals
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Materials Processing Center/Microphotonics Center</title>
<link href="https://hdl.handle.net/1721.1/163895" rel="alternate"/>
<author>
<name>Lippegrenfell, Tamarleigh</name>
</author>
<id>https://hdl.handle.net/1721.1/163895</id>
<updated>2025-11-22T03:17:08Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Materials Processing Center/Microphotonics Center
Lippegrenfell, Tamarleigh
This report contains the following sections: Relationships; Activities; Equipment and Facilities; Outlook;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Laboratory for Information and Decision Systems</title>
<link href="https://hdl.handle.net/1721.1/163894" rel="alternate"/>
<author>
<name>Chan, Vincent W. S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163894</id>
<updated>2025-11-22T03:18:01Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Laboratory for Information and Decision Systems
Chan, Vincent W. S.
This report contains the following sections: Highlights; Faculty; Students; Research Overview; Research Areas;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Concourse Program</title>
<link href="https://hdl.handle.net/1721.1/163893" rel="alternate"/>
<author>
<name>Rose, Robert M.</name>
</author>
<id>https://hdl.handle.net/1721.1/163893</id>
<updated>2025-11-22T03:18:16Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Concourse Program
Rose, Robert M.
This report contains the following sections: Personnel Information; Enrollment; Teaching and Curriculum
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Biotechnology Process Engineering Center</title>
<link href="https://hdl.handle.net/1721.1/163892" rel="alternate"/>
<author>
<name>Griffith, Linda</name>
</author>
<id>https://hdl.handle.net/1721.1/163892</id>
<updated>2025-11-22T03:17:46Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Biotechnology Process Engineering Center
Griffith, Linda
This report contains the following sections: Goals, Objectives, and Priorities; Accomplishments; Administrative Initiatives; Finances and Funding; Future Plans; Personnel;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Electrical Engineering and Computer Science</title>
<link href="https://hdl.handle.net/1721.1/163891" rel="alternate"/>
<author>
<name>Guttag, John V.</name>
</author>
<id>https://hdl.handle.net/1721.1/163891</id>
<updated>2025-11-22T03:18:19Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Electrical Engineering and Computer Science
Guttag, John V.
This report contains the following sections: Graduate Program; Undergraduate Program; 6-A Internship Program; Faculty Notes; Faculty Awards and Honors
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Media Laboratory</title>
<link href="https://hdl.handle.net/1721.1/163890" rel="alternate"/>
<author>
<name>Bender, Walter</name>
</author>
<id>https://hdl.handle.net/1721.1/163890</id>
<updated>2025-11-22T03:18:06Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Media Laboratory
Bender, Walter
This report contains the following sections: Research Achievements; Exhibitions and Performances; Collaboration within MIT; Media Lab Europe; Sponsors; Human Resources/Administration;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Athletics, Physical Education, and Recreation</title>
<link href="https://hdl.handle.net/1721.1/163889" rel="alternate"/>
<author>
<name>Royer, Candace L.</name>
</author>
<id>https://hdl.handle.net/1721.1/163889</id>
<updated>2025-11-22T03:17:02Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Athletics, Physical Education, and Recreation
Royer, Candace L.
This report contains the following sections: Summary Statement; Highlights of the Year; New Initiatives; Summary of Staffing Changes
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Student Services Information Technology</title>
<link href="https://hdl.handle.net/1721.1/163888" rel="alternate"/>
<author>
<name>Stevenson, JoAnne</name>
</author>
<id>https://hdl.handle.net/1721.1/163888</id>
<updated>2025-11-22T03:17:51Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Student Services Information Technology
Stevenson, JoAnne
This report contains the following sections: Accomplishments; Staffing Changes
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, MIT Careers Office</title>
<link href="https://hdl.handle.net/1721.1/163887" rel="alternate"/>
<author>
<name>Reed, Elizabeth</name>
</author>
<id>https://hdl.handle.net/1721.1/163887</id>
<updated>2025-11-22T03:17:35Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, MIT Careers Office
Reed, Elizabeth
This report contains the following sections: Accomplishments during FY2004; Staffing Changes;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Director, Libraries</title>
<link href="https://hdl.handle.net/1721.1/163886" rel="alternate"/>
<author>
<name>Wolpert, Ann J.</name>
</author>
<author>
<name>Gass, Steve</name>
</author>
<author>
<name>Fleishauer, Carol</name>
</author>
<author>
<name>Glavash, Keith</name>
</author>
<author>
<name>Smith, MacKenzie</name>
</author>
<id>https://hdl.handle.net/1721.1/163886</id>
<updated>2025-11-22T03:17:58Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Director, Libraries
Wolpert, Ann J.; Gass, Steve; Fleishauer, Carol; Glavash, Keith; Smith, MacKenzie
This report contains the following sections: Director, Libraries; Public Services; Collection Services; Administrative Services; Technology Planning and Administration
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Center for Space Research</title>
<link href="https://hdl.handle.net/1721.1/163885" rel="alternate"/>
<author>
<name>Hewitt, Jacqueline N.</name>
</author>
<id>https://hdl.handle.net/1721.1/163885</id>
<updated>2025-11-22T03:16:53Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Center for Space Research
Hewitt, Jacqueline N.
This report contains the following sections: Research Highlights; Education and Public Outreach
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Laboratory for Nuclear Science</title>
<link href="https://hdl.handle.net/1721.1/163884" rel="alternate"/>
<author>
<name>Matthews, June L.</name>
</author>
<id>https://hdl.handle.net/1721.1/163884</id>
<updated>2025-11-22T03:17:44Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Laboratory for Nuclear Science
Matthews, June L.
This report contains the following sections: Experimental High-Energy Physics; Experimental Nuclear Physics; Theoretical Nuclear and Particle Physics; Education
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, George R. Harrison Spectroscopy Laboratory</title>
<link href="https://hdl.handle.net/1721.1/163883" rel="alternate"/>
<author>
<name>Feld, Michael S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163883</id>
<updated>2025-11-22T03:17:04Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, George R. Harrison Spectroscopy Laboratory
Feld, Michael S.
This report contains the following sections: Research Highlights;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Mathematics</title>
<link href="https://hdl.handle.net/1721.1/163882" rel="alternate"/>
<author>
<name>Vogan, David A., Jr.</name>
</author>
<id>https://hdl.handle.net/1721.1/163882</id>
<updated>2025-11-22T03:16:58Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Mathematics
Vogan, David A., Jr.
This report contains the following sections: Students; Faculty Changes; Administration; Research; Honors, Prizes, and Awards; Education;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Earth, Atmospheric, and Planetary Sciences</title>
<link href="https://hdl.handle.net/1721.1/163881" rel="alternate"/>
<author>
<name>Zuber, Maria T.</name>
</author>
<id>https://hdl.handle.net/1721.1/163881</id>
<updated>2025-11-22T03:17:54Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Earth, Atmospheric, and Planetary Sciences
Zuber, Maria T.
This report contains the following sections: Educational Activities; Faculty; Current Research;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Program in Science, Technology, and Society</title>
<link href="https://hdl.handle.net/1721.1/163880" rel="alternate"/>
<author>
<name>Williams, Rosalind H.</name>
</author>
<id>https://hdl.handle.net/1721.1/163880</id>
<updated>2025-11-22T03:17:53Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Program in Science, Technology, and Society
Williams, Rosalind H.
This report contains the following sections: Doctoral Program; Projects, Grants, and Initiatives; Educational Activities; Ongoing Activities of the Program; Knight Science Journalism Fellowship Program; Faculty Activities;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Special Projects Office</title>
<link href="https://hdl.handle.net/1721.1/163879" rel="alternate"/>
<author>
<name>Enders, Margaret S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163879</id>
<updated>2025-11-22T03:17:25Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Special Projects Office
Enders, Margaret S.
This report contains the following sections: Administration of the MIT Communication Requirement; The Cambridge-MIT Undergraduate Student Exchange Program; Planning for an Office of Study Abroad and Foreign Scholarships; The MacVicar Faculty Fellows Program; The d’Arbeloff Grants Program; Support to the Task Force on the Undergraduate Educational Commons; Staffing Changes
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Office of Minority Education</title>
<link href="https://hdl.handle.net/1721.1/163878" rel="alternate"/>
<author>
<name>Beamon, Kim</name>
</author>
<id>https://hdl.handle.net/1721.1/163878</id>
<updated>2025-11-22T03:17:16Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Office of Minority Education
Beamon, Kim
This report contains the following sections: Project Interphase; Seminar XL; Second Summer Program; Tutorial Service Room; Industrial Advisory Council for Minority Education; Office of Minority Education Student Advisory Council; Minority Scholarships; Minority Awards Banquet;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Admissions Office</title>
<link href="https://hdl.handle.net/1721.1/163877" rel="alternate"/>
<author>
<name>Jones, Marilee</name>
</author>
<id>https://hdl.handle.net/1721.1/163877</id>
<updated>2025-11-22T03:16:51Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Admissions Office
Jones, Marilee
This report contains the following sections: Accomplishments; Staffing Changes
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, International Students Office</title>
<link href="https://hdl.handle.net/1721.1/163876" rel="alternate"/>
<author>
<name>Guichard‐Ashbrook, Danielle</name>
</author>
<id>https://hdl.handle.net/1721.1/163876</id>
<updated>2025-11-22T03:17:51Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, International Students Office
Guichard‐Ashbrook, Danielle
This report contains the following sections: International Admissions; International Student Advising; Orientation Programs for International Students; Host to International Students Program; Future Goals;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, MIT Press</title>
<link href="https://hdl.handle.net/1721.1/163875" rel="alternate"/>
<author>
<name>Faran, Ellen W.</name>
</author>
<id>https://hdl.handle.net/1721.1/163875</id>
<updated>2025-11-22T03:18:13Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, MIT Press
Faran, Ellen W.
This report contains the following sections: FY2004 Highlights; FY2004 Financial Results; MIT Press Management Board, 2003–2004; MIT Press Editorial Board, 2003–2004; MIT Press Acquisitions Editors; Books Division; Production Department; Journals Division; MIT Faculty Journal Editors; MIT Press Bookstore
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Picower Center for Learning and Memory</title>
<link href="https://hdl.handle.net/1721.1/163874" rel="alternate"/>
<author>
<name>Tonegawa, Susumu</name>
</author>
<id>https://hdl.handle.net/1721.1/163874</id>
<updated>2025-11-22T03:17:50Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Picower Center for Learning and Memory
Tonegawa, Susumu
This report contains the following sections: Major Research Breakthroughs; New Building and Faculty Hiring; Public Relations; Promotions; Awards; Research Highlights;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Center for Cancer Research</title>
<link href="https://hdl.handle.net/1721.1/163873" rel="alternate"/>
<author>
<name>Jacks, Tyler</name>
</author>
<id>https://hdl.handle.net/1721.1/163873</id>
<updated>2025-11-22T03:17:34Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Center for Cancer Research
Jacks, Tyler
This report contains the following sections: Animal Models of Cancer; Stem Cells, Development, and Cancer; RNAi Technology; Integrative Analysis of Cancer Pathways; Faculty Awards
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Program in Writing and Humanistic Studies</title>
<link href="https://hdl.handle.net/1721.1/163872" rel="alternate"/>
<author>
<name>Paradis, James</name>
</author>
<id>https://hdl.handle.net/1721.1/163872</id>
<updated>2025-11-22T03:18:07Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Program in Writing and Humanistic Studies
Paradis, James
This report contains the following sections: Research and Publications; Academic Programs and Initiatives; Service, Grants, and Awards; Personnel;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Music and Theater Arts</title>
<link href="https://hdl.handle.net/1721.1/163871" rel="alternate"/>
<author>
<name>Ziporyn, Evan</name>
</author>
<id>https://hdl.handle.net/1721.1/163871</id>
<updated>2025-11-22T03:17:55Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Music and Theater Arts
Ziporyn, Evan
This report contains the following sections: Highlights of the Year; Honors and Awards; Program Highlights; Achievements; Personnel;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Office of Professional Education Programs</title>
<link href="https://hdl.handle.net/1721.1/163870" rel="alternate"/>
<author>
<name>Stine, Jennifer</name>
</author>
<id>https://hdl.handle.net/1721.1/163870</id>
<updated>2025-11-22T03:17:44Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Office of Professional Education Programs
Stine, Jennifer
This report contains the following sections: Current Goals, Objectives, Priorities; Accomplishments and Program Developments; Funding; Future Plans; Personnel Information
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Anthropology</title>
<link href="https://hdl.handle.net/1721.1/163869" rel="alternate"/>
<author>
<name>Jackson, Jean</name>
</author>
<id>https://hdl.handle.net/1721.1/163869</id>
<updated>2025-11-22T03:18:29Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Anthropology
Jackson, Jean
This report contains the following sections: Personnel and Administrative Changes; Program Contributions to MIT and Outside Communities; Educational Activities; Presentations; Publications; Other Program Accomplishments; Grants, Honors, and Awards
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Laboratory for Manufacturing and Productivity</title>
<link href="https://hdl.handle.net/1721.1/163868" rel="alternate"/>
<author>
<name>Gutowski, Timothy G.</name>
</author>
<id>https://hdl.handle.net/1721.1/163868</id>
<updated>2025-11-22T03:18:27Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Laboratory for Manufacturing and Productivity
Gutowski, Timothy G.
This report contains the following sections: Research and Education Highlights, Awards;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Industrial Performance Center</title>
<link href="https://hdl.handle.net/1721.1/163867" rel="alternate"/>
<author>
<name>Lester, Richard K.</name>
</author>
<id>https://hdl.handle.net/1721.1/163867</id>
<updated>2025-11-22T03:17:52Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Industrial Performance Center
Lester, Richard K.
This report contains the following sections: Research Highlights; People;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Materials Science and Engineering</title>
<link href="https://hdl.handle.net/1721.1/163866" rel="alternate"/>
<author>
<name>Suresh, Subra</name>
</author>
<id>https://hdl.handle.net/1721.1/163866</id>
<updated>2025-11-22T03:17:31Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Materials Science and Engineering
Suresh, Subra
This report contains the following sections: Research Initiatives; Undergraduate Education; Graduate Education; Master of Engineering in Materials; Other Educational Initiatives; Student Organizations; Personnel; Research Highlights; Awards and Honors; AY2004 Undergraduate Awards; AY2004 Graduate Awards; Faculty Notes; Future Plans;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Engineering Systems Division</title>
<link href="https://hdl.handle.net/1721.1/163865" rel="alternate"/>
<author>
<name>Hastings, Daniel</name>
</author>
<author>
<name>Allen, Tom</name>
</author>
<author>
<name>Hanson, Bill</name>
</author>
<author>
<name>Simchi‐Levi, David</name>
</author>
<author>
<name>Newman, Dava</name>
</author>
<author>
<name>Nordal, Nils</name>
</author>
<author>
<name>Moavenzadeh, Fred</name>
</author>
<author>
<name>Clay, Phillip L.</name>
</author>
<author>
<name>Heywood, John B.</name>
</author>
<author>
<name>Cusumano, Michael A.</name>
</author>
<author>
<name>MacDuffie, John Paul</name>
</author>
<author>
<name>Cutcher‐Gershenfeld, Joel</name>
</author>
<author>
<name>Kochan, Thomas A.</name>
</author>
<author>
<name>Nightingale, Deborah</name>
</author>
<author>
<name>Carroll, John</name>
</author>
<author>
<name>Bryan, Frederick “Terry”</name>
</author>
<author>
<name>Harris, Wesley L.</name>
</author>
<author>
<name>Roth, Richard</name>
</author>
<author>
<name>Ashford, Nicholas</name>
</author>
<author>
<name>Sheffi, Yossi</name>
</author>
<id>https://hdl.handle.net/1721.1/163865</id>
<updated>2025-11-22T03:17:11Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Engineering Systems Division
Hastings, Daniel; Allen, Tom; Hanson, Bill; Simchi‐Levi, David; Newman, Dava; Nordal, Nils; Moavenzadeh, Fred; Clay, Phillip L.; Heywood, John B.; Cusumano, Michael A.; MacDuffie, John Paul; Cutcher‐Gershenfeld, Joel; Kochan, Thomas A.; Nightingale, Deborah; Carroll, John; Bryan, Frederick “Terry”; Harris, Wesley L.; Roth, Richard; Ashford, Nicholas; Sheffi, Yossi
This report contains the following sections: Ongoing Initiatives; Faculty Notes; Student Honors; Program Honors; INCOSE; Conference on Systems Engineering Research; ESD Administrative Staff; Major Meetings; Leaders for Manufacturing; System Design and Management; Technology and Policy Program; Technology, Management, and Policy Program; Center for Innovation in Product Development; Center for Technology, Policy, and Industrial Development;  Ford–MIT Alliance; International Motor Vehicle Program; Labor Aerospace Research Agenda; Lean Aerospace Initiative;  Lean Sustainment Initiative; Materials Systems Laboratory; MIT Information Quality Program; Technology and Law Program; MIT Center for Transportation and Logistics;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Civil and Environmental Engineering</title>
<link href="https://hdl.handle.net/1721.1/163864" rel="alternate"/>
<author>
<name>Jaillet, Patrick</name>
</author>
<id>https://hdl.handle.net/1721.1/163864</id>
<updated>2025-11-22T03:17:45Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Civil and Environmental Engineering
Jaillet, Patrick
This report contains the following sections: Initiatives; Educational Activities; Undergraduate Program; Graduate Programs; Faculty Notes; Student Notes; Departmental Awards;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Dean, School of Engineering</title>
<link href="https://hdl.handle.net/1721.1/163863" rel="alternate"/>
<author>
<name>Magnanti, Thomas L.</name>
</author>
<id>https://hdl.handle.net/1721.1/163863</id>
<updated>2025-11-22T03:18:05Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Dean, School of Engineering
Magnanti, Thomas L.
This report contains the following sections: Continuing Initiatives; Emerging Technologies; Educational Innovation and Diversity; New Initiative: Electronic Outreach to Alumni; Notable Events; Organizational Reviews and Changes; Personnel; Awards; Statistics for AY2004;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Associate Provost for the Arts</title>
<link href="https://hdl.handle.net/1721.1/163862" rel="alternate"/>
<author>
<name>Brody, Alan</name>
</author>
<id>https://hdl.handle.net/1721.1/163862</id>
<updated>2025-11-22T03:16:58Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Associate Provost for the Arts
Brody, Alan
This report contains the following sections: Resources and Programs; Laboratory for the Performing Arts; Budget Crunch; Student Art Association and Wiesner Gallery; Council for the Arts and the McDermott Award; Office of Arts Communication; Museum Loan Network; MIT Museum; List Visual Arts Center;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Council on Primary and Secondary Education</title>
<link href="https://hdl.handle.net/1721.1/163861" rel="alternate"/>
<author>
<name>Latanision, R. M.</name>
</author>
<id>https://hdl.handle.net/1721.1/163861</id>
<updated>2025-11-22T03:17:30Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Council on Primary and Secondary Education
Latanision, R. M.
This report contains the following sections: MIT/Wellesley Teacher Education Program; Teacher Sabbaticals;  Educational Program Outreach Directory; Programs by the CPSE Chairman; Association of American Universities Task Force on K–16 Education; Science and Engineering Program for Teachers;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, MIT Washington Office</title>
<link href="https://hdl.handle.net/1721.1/163860" rel="alternate"/>
<author>
<name>Crowley, John C.</name>
</author>
<id>https://hdl.handle.net/1721.1/163860</id>
<updated>2025-11-22T03:17:17Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, MIT Washington Office
Crowley, John C.
This report contains the following sections: Mission; Advocacy Coalitions and Working Groups; Legislative Initiatives; MIT Lincoln Laboratory, Center for Fusion and Plasma Science, Bates Laboratory; MIT Congressional Staff Seminar on Science and Technology; Executive Branch
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Dean, School of Architecture and Planning</title>
<link href="https://hdl.handle.net/1721.1/163859" rel="alternate"/>
<author>
<name>Santos, Adèle Naudé</name>
</author>
<author>
<name>Knight, Terry</name>
</author>
<id>https://hdl.handle.net/1721.1/163859</id>
<updated>2025-11-22T03:16:55Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Dean, School of Architecture and Planning
Santos, Adèle Naudé; Knight, Terry
This report contains the following sections: Faculty; Space; Educational Initiatives; Events and Awards; Goals for 2005;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Office of the Arts</title>
<link href="https://hdl.handle.net/1721.1/163858" rel="alternate"/>
<author>
<name>Cohen, Susan R.</name>
</author>
<author>
<name>Haller, Mary L.</name>
</author>
<author>
<name>Billingsley, Glenn</name>
</author>
<author>
<name>Oshima, Michèle</name>
</author>
<id>https://hdl.handle.net/1721.1/163858</id>
<updated>2025-11-22T03:18:12Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Office of the Arts
Cohen, Susan R.; Haller, Mary L.; Billingsley, Glenn; Oshima, Michèle
This report contains the following sections: Council for the Arts; Arts Communication; Office of the Arts Development; Student &amp; Artist-in-Residence Programs;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, MIT Museum</title>
<link href="https://hdl.handle.net/1721.1/163857" rel="alternate"/>
<author>
<name>Curtis, Jack</name>
</author>
<author>
<name>Douglas, Debbie</name>
</author>
<author>
<name>Hunt, Stephanie</name>
</author>
<author>
<name>Hasselbalch, Kurt</name>
</author>
<author>
<name>Leen, Mary</name>
</author>
<author>
<name>OʹNeill, Jenny</name>
</author>
<author>
<name>Rosenthal, Beryl</name>
</author>
<author>
<name>Van Zante, Gary</name>
</author>
<author>
<name>Whitlow, Joan</name>
</author>
<id>https://hdl.handle.net/1721.1/163857</id>
<updated>2025-11-22T03:18:26Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, MIT Museum
Curtis, Jack; Douglas, Debbie; Hunt, Stephanie; Hasselbalch, Kurt; Leen, Mary; OʹNeill, Jenny; Rosenthal, Beryl; Van Zante, Gary; Whitlow, Joan
This report contains the following sections: Collections; Education and Outreach; Exhibitions; Administration;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Lincoln Laboratory</title>
<link href="https://hdl.handle.net/1721.1/163856" rel="alternate"/>
<author>
<name>Briggs, David L.</name>
</author>
<id>https://hdl.handle.net/1721.1/163856</id>
<updated>2025-11-22T03:17:23Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Lincoln Laboratory
Briggs, David L.
This report contains the following sections: Laboratory Operations; Technical Program Highlights;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Associate Provost</title>
<link href="https://hdl.handle.net/1721.1/163855" rel="alternate"/>
<author>
<name>Canizares, Claude R.</name>
</author>
<id>https://hdl.handle.net/1721.1/163855</id>
<updated>2025-11-22T03:16:54Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Associate Provost
Canizares, Claude R.
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Technology and Development Program</title>
<link href="https://hdl.handle.net/1721.1/163854" rel="alternate"/>
<author>
<name>Moavenzadeh, Fred</name>
</author>
<id>https://hdl.handle.net/1721.1/163854</id>
<updated>2025-11-22T03:18:24Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Technology and Development Program
Moavenzadeh, Fred
This report contains the following sections: Current Research Programs; Future Research Initiatives; Current Educational Initiatives; Organization
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Haystack Observatory</title>
<link href="https://hdl.handle.net/1721.1/163853" rel="alternate"/>
<author>
<name>Salah, Joseph E.</name>
</author>
<id>https://hdl.handle.net/1721.1/163853</id>
<updated>2025-11-22T03:18:27Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Haystack Observatory
Salah, Joseph E.
This report contains the following sections: Instrumentation; Radio Astronomy; Instrumentation Development; Atmospheric Science; Educational Programs;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Computational and Systems Biology Initiative</title>
<link href="https://hdl.handle.net/1721.1/163852" rel="alternate"/>
<author>
<name>Sorger, Peter</name>
</author>
<author>
<name>Tadmor, Brigitta</name>
</author>
<id>https://hdl.handle.net/1721.1/163852</id>
<updated>2025-11-22T03:17:07Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Computational and Systems Biology Initiative
Sorger, Peter; Tadmor, Brigitta
This report contains the following sections: Goals and Priorities; Education and Training; Research; Technology Development; Junior Faculty Startup; Outreach; Leadership; Finances and Funding
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Office of Educational Opportunity Programs</title>
<link href="https://hdl.handle.net/1721.1/163851" rel="alternate"/>
<author>
<name>Crichlow, Ronald S.</name>
</author>
<author>
<name>Layne, Evette M.</name>
</author>
<id>https://hdl.handle.net/1721.1/163851</id>
<updated>2025-11-22T03:18:02Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Office of Educational Opportunity Programs
Crichlow, Ronald S.; Layne, Evette M.
This report contains the following sections: MIT/Wellesley Upward Bound
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Center for Archaeological Materials / Center for Materials Research in Archaeology and Ethnology</title>
<link href="https://hdl.handle.net/1721.1/163850" rel="alternate"/>
<author>
<name>Lechtman, Heather</name>
</author>
<id>https://hdl.handle.net/1721.1/163850</id>
<updated>2025-11-22T03:16:57Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Center for Archaeological Materials / Center for Materials Research in Archaeology and Ethnology
Lechtman, Heather
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Finance: Office of Sponsored Programs</title>
<link href="https://hdl.handle.net/1721.1/163849" rel="alternate"/>
<author>
<name>Norris, Julie</name>
</author>
<id>https://hdl.handle.net/1721.1/163849</id>
<updated>2025-11-22T03:17:14Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Finance: Office of Sponsored Programs
Norris, Julie
This report contains the following sections: Research Volume; Compliance Issues; Costing Issues; Negotiation of Rates; Other Costing Activities; Export Control Laws and Related Issues; Administrative Theme Initiatives;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Teaching and Learning Laboratory</title>
<link href="https://hdl.handle.net/1721.1/163848" rel="alternate"/>
<author>
<name>Breslow, Lori</name>
</author>
<id>https://hdl.handle.net/1721.1/163848</id>
<updated>2025-11-22T03:17:57Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Teaching and Learning Laboratory
Breslow, Lori
This report contains the following sections: Instructional Support; Assessment and Evaluation; Research and Scholarship; Staff Changes;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Student Financial Services</title>
<link href="https://hdl.handle.net/1721.1/163847" rel="alternate"/>
<author>
<name>Hicks, Betsy</name>
</author>
<id>https://hdl.handle.net/1721.1/163847</id>
<updated>2025-11-22T03:16:52Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Student Financial Services
Hicks, Betsy
This report contains the following sections: Operating Activities; Student Receivables; Undergraduate Financial Aid; Undergraduate Parent Loans; Graduate Need-based Financial Aid; Accomplishments; Staffing;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Office of the Registrar</title>
<link href="https://hdl.handle.net/1721.1/163846" rel="alternate"/>
<author>
<name>Callahan, Mary</name>
</author>
<id>https://hdl.handle.net/1721.1/163846</id>
<updated>2025-11-22T03:17:00Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Office of the Registrar
Callahan, Mary
This report contains the following sections: Accomplishments; Operational Highlights; Classroom Management Highlights; Registration; Degrees Awarded; Personnel Changes;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Dean for Graduate Students</title>
<link href="https://hdl.handle.net/1721.1/163845" rel="alternate"/>
<author>
<name>Colbert, Isaac M.</name>
</author>
<author>
<name>Staton, Blanche</name>
</author>
<author>
<name>Wurie, Brima</name>
</author>
<author>
<name>Charles, Roy A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163845</id>
<updated>2025-11-22T03:18:03Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Dean for Graduate Students
Colbert, Isaac M.; Staton, Blanche; Wurie, Brima; Charles, Roy A.
This report contains the following sections: Graduate Students Office; Indicators of Change; Steps Forward; Strategic Collaborations; Renewed Commitment to Graduate Student Diversity; Graduate Fellowships; Programs and Services;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Earth System Initiative</title>
<link href="https://hdl.handle.net/1721.1/163844" rel="alternate"/>
<author>
<name>Chisholm, Penny</name>
</author>
<author>
<name>Hodges, Kip</name>
</author>
<id>https://hdl.handle.net/1721.1/163844</id>
<updated>2025-11-22T03:17:05Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Earth System Initiative
Chisholm, Penny; Hodges, Kip
This report contains the following sections: Research; Education and Outreach; Personnel;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Brain and Cognitive Sciences</title>
<link href="https://hdl.handle.net/1721.1/163843" rel="alternate"/>
<author>
<name>Sur, Mriganka</name>
</author>
<id>https://hdl.handle.net/1721.1/163843</id>
<updated>2025-11-22T03:18:05Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Brain and Cognitive Sciences
Sur, Mriganka
This report contains the following sections: Education; Faculty Highlights; Research Advances; Learning and Memory; Brain Development and Plasticity; Language and Cognition; New Undertakings and Ongoing Events
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Political Science</title>
<link href="https://hdl.handle.net/1721.1/163842" rel="alternate"/>
<author>
<name>Cohen, Joshua</name>
</author>
<id>https://hdl.handle.net/1721.1/163842</id>
<updated>2025-11-22T03:18:25Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Political Science
Cohen, Joshua
This report contains the following sections: Significant Events 2003–2004; Student Recruitment, Placement, and Enrollment; Faculty/Personnel; Promotions/Personnel Activity in AY2004 and Upcoming Faculty Searches; Faculty Leaves, Departures, Upcoming Searches, and Visitors; Faculty Research and Publications;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Linguistics and Philosophy</title>
<link href="https://hdl.handle.net/1721.1/163841" rel="alternate"/>
<author>
<name>Marantz, Alec</name>
</author>
<id>https://hdl.handle.net/1721.1/163841</id>
<updated>2025-11-22T03:17:03Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Linguistics and Philosophy
Marantz, Alec
This report contains the following sections: Research: Linguistics; Research: Philosophy; Publications; Honors and Awards; Leaves of Absence; Personnel
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Economics</title>
<link href="https://hdl.handle.net/1721.1/163840" rel="alternate"/>
<author>
<name>Holmström, Bengt</name>
</author>
<id>https://hdl.handle.net/1721.1/163840</id>
<updated>2025-11-22T03:17:29Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Economics
Holmström, Bengt
This report contains the following sections: Highlights of the Year; Future Plans; Personnel; Honors and Awards; Research Achievements;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Microsystems Technology Laboratories</title>
<link href="https://hdl.handle.net/1721.1/163839" rel="alternate"/>
<author>
<name>Schmidt, Martin A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163839</id>
<updated>2025-11-22T03:16:57Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Microsystems Technology Laboratories
Schmidt, Martin A.
This report contains the following sections: Highlights; Future Plans;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Biological Engineering Division</title>
<link href="https://hdl.handle.net/1721.1/163838" rel="alternate"/>
<author>
<name>Lauffenburger, Douglas A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163838</id>
<updated>2025-11-22T03:17:05Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Biological Engineering Division
Lauffenburger, Douglas A.
This report contains the following sections: Undergraduate Education; Graduate Education;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Center for Advanced Visual Studies</title>
<link href="https://hdl.handle.net/1721.1/163837" rel="alternate"/>
<author>
<name>Wodiczko, Krzysztof</name>
</author>
<id>https://hdl.handle.net/1721.1/163837</id>
<updated>2025-11-22T03:17:28Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Center for Advanced Visual Studies
Wodiczko, Krzysztof
This report contains the following sections: Activities
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Technology Licensing Office</title>
<link href="https://hdl.handle.net/1721.1/163836" rel="alternate"/>
<author>
<name>Nelsen, Lita</name>
</author>
<id>https://hdl.handle.net/1721.1/163836</id>
<updated>2025-11-22T03:16:54Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Technology Licensing Office
Nelsen, Lita
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Sea Grant College Program</title>
<link href="https://hdl.handle.net/1721.1/163835" rel="alternate"/>
<author>
<name>Chryssostomidis, Chryssostomos</name>
</author>
<id>https://hdl.handle.net/1721.1/163835</id>
<updated>2025-11-22T03:17:29Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Sea Grant College Program
Chryssostomidis, Chryssostomos
This report contains the following sections: Education; Graduate Student Research Assistants; Undergraduate Research Opportunities Program; K-12 Education; New Core Research Projects; Ongoing Core Research Projects; Advisory Services; Outreach and Communications; Program Management
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Research Laboratory of Electronics</title>
<link href="https://hdl.handle.net/1721.1/163834" rel="alternate"/>
<author>
<name>Shapiro, Jeffrey H.</name>
</author>
<id>https://hdl.handle.net/1721.1/163834</id>
<updated>2025-11-22T03:18:28Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Research Laboratory of Electronics
Shapiro, Jeffrey H.
This report contains the following sections: Circuits, Systems, Signals and Communications; Physical Sciences; Quantum Computation and Communication; Nanostructures; Photonic Materials, Devices, and Systems; Communication Biophysics; RLE Conference Facility; Appointments, Awards, and Events; Affirmative Action
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Nuclear Reactor Laboratory</title>
<link href="https://hdl.handle.net/1721.1/163833" rel="alternate"/>
<author>
<name>Moncton, David E.</name>
</author>
<id>https://hdl.handle.net/1721.1/163833</id>
<updated>2025-11-22T03:18:08Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Nuclear Reactor Laboratory
Moncton, David E.
This report contains the following sections: MIT Research Reactor; Reactor Administration and Organization; Organizational Diversity; Safety and Security; Relicensing and Redesign; Major Reactor Services; Research Activities;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, MIT/WHOI Joint Program in Oceanography and Applied Ocean Science and Engineering</title>
<link href="https://hdl.handle.net/1721.1/163832" rel="alternate"/>
<author>
<name>Rizzoli, Paola</name>
</author>
<author>
<name>Schwartz, Ronni</name>
</author>
<id>https://hdl.handle.net/1721.1/163832</id>
<updated>2025-11-22T03:17:41Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, MIT/WHOI Joint Program in Oceanography and Applied Ocean Science and Engineering
Rizzoli, Paola; Schwartz, Ronni
This report contains the following sections: New Program in Marine Meteorology; Student Apartment in University Housing; Continuation of Presidential Fellowships; External Review
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Academic Media Production Services</title>
<link href="https://hdl.handle.net/1721.1/163831" rel="alternate"/>
<author>
<name>Mitra, Amitava “Babi”</name>
</author>
<author>
<name>Kumar, M. S. Vijay</name>
</author>
<id>https://hdl.handle.net/1721.1/163831</id>
<updated>2025-11-22T03:18:09Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Academic Media Production Services
Mitra, Amitava “Babi”; Kumar, M. S. Vijay
This report contains the following sections: Vision; Strategic Support; AMPS Advisory Board; Stellar Faculty Advisory Board; Services Offered; Organizing for Service; MIT Video Productions and Digital Technologies; Initiatives to Advance Operational Efficiency; People; Educational Design and Development Group; Changes in Personnel and Funding; Web Tools and Operations; Stellar Course Management System; Financial Operations and Administrative Liaison Unit; Projects; Facilities; Awards, Conferences, and Programs; Future Plans
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Provost</title>
<link href="https://hdl.handle.net/1721.1/163830" rel="alternate"/>
<author>
<name>Brown, Robert A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163830</id>
<updated>2025-11-22T03:17:31Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Provost
Brown, Robert A.
This report contains the following sections: People; Academic Programs; MIT OpenCourseWare; Broad Institute; McGovern Institute for Brain Research; Facilities; Faculty; Graduate Student Fellowships; Finances; Research
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Vice President and Secretary of the Corporation</title>
<link href="https://hdl.handle.net/1721.1/163829" rel="alternate"/>
<author>
<name>Willmore, Kathryn A.</name>
</author>
<author>
<name>Gallagher, Gayle M.</name>
</author>
<author>
<name>Lisanti, Suzana</name>
</author>
<author>
<name>Jones, Arthur L.</name>
</author>
<author>
<name>Lee, Monica</name>
</author>
<author>
<name>Kiang, Stuart</name>
</author>
<author>
<name>Lester,  Susan A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163829</id>
<updated>2025-11-22T03:17:01Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Vice President and Secretary of the Corporation
Willmore, Kathryn A.; Gallagher, Gayle M.; Lisanti, Suzana; Jones, Arthur L.; Lee, Monica; Kiang, Stuart; Lester,  Susan A.
This report contains the following sections: Public Relations Services; Conference Services, Events, and Information Center; MIT Home Page Team; News Office; Publishing Services Bureau; Reference Publications Office| Office of the Secretary of the Corporation
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Vice President for Resource Development</title>
<link href="https://hdl.handle.net/1721.1/163828" rel="alternate"/>
<author>
<name>Stowe, Barbara G.</name>
</author>
<author>
<name>Dare, Stephen A.</name>
</author>
<author>
<name>Eastment, Katherine E.</name>
</author>
<author>
<name>Serfes, Pamela Dumas</name>
</author>
<author>
<name>Koster, Karl F.</name>
</author>
<author>
<name>Scott, Robert D.</name>
</author>
<author>
<name>Rinaldi, Christine M.</name>
</author>
<author>
<name>Oldham, John E.</name>
</author>
<author>
<name>Sager, Judith V.</name>
</author>
<author>
<name>Miller, Lucy V.</name>
</author>
<id>https://hdl.handle.net/1721.1/163828</id>
<updated>2025-11-22T03:18:30Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Vice President for Resource Development
Stowe, Barbara G.; Dare, Stephen A.; Eastment, Katherine E.; Serfes, Pamela Dumas; Koster, Karl F.; Scott, Robert D.; Rinaldi, Christine M.; Oldham, John E.; Sager, Judith V.; Miller, Lucy V.
This report contains the following sections: Highlights; Corporation and Foundation Giving; Principal Gifts; Stewardship; Volunteer Partnerships; Unrestricted and Core Support; Human Resources; Summary of Private Support; Campaign for MIT; Campaign Giving; Communications and Donor Relations; Corporate Relations; Development Research and Systems; Donor Partnerships and Special Projects; Foundation Relations and Academic Development Support; Gift Planning; Principal Gifts
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Vice President for Information Services and Technology</title>
<link href="https://hdl.handle.net/1721.1/163827" rel="alternate"/>
<author>
<name>Grochow, Jerrold M.</name>
</author>
<id>https://hdl.handle.net/1721.1/163827</id>
<updated>2025-11-22T03:18:08Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Vice President for Information Services and Technology
Grochow, Jerrold M.
This report contains the following sections: Client Orientation; Collaboration; Sustainability; Accountability; Professionalism;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Chair of the Faculty</title>
<link href="https://hdl.handle.net/1721.1/163826" rel="alternate"/>
<author>
<name>Bras, Rafael L.</name>
</author>
<author>
<name>Burns, Lily U.</name>
</author>
<id>https://hdl.handle.net/1721.1/163826</id>
<updated>2025-11-22T03:18:18Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Chair of the Faculty
Bras, Rafael L.; Burns, Lily U.
This report contains the following sections: Faculty Policy Committee; Committee on the Undergraduate Program; Subcommittee on the Communication Requirement; Committee on Academic Performance; Committee on Curricula; Committee on Discipline; Harold E. Edgerton Award Committee; Committee on Faculty–Administration; Killian Award Committee; Committee on the Library System; Committee on Nominations; Committee on Student Life; Student–Faculty Interaction; Student Family Health Care; Committee on Outside Professional Activities; Committee on Undergraduate Admissions and Financial Aid;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, ROTC Programs</title>
<link href="https://hdl.handle.net/1721.1/163825" rel="alternate"/>
<author>
<name>Rojko, Paul</name>
</author>
<author>
<name>Baker, Brian L.</name>
</author>
<author>
<name>Holland, Robert D.</name>
</author>
<id>https://hdl.handle.net/1721.1/163825</id>
<updated>2025-11-22T03:17:36Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, ROTC Programs
Rojko, Paul; Baker, Brian L.; Holland, Robert D.
This report contains the following sections: Air Force Reserve Officers’ Training Corps; Army Reserve Officers’ Training Corps; Naval Reserve Officers Training Corps
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Dean for Undergraduate Education</title>
<link href="https://hdl.handle.net/1721.1/163824" rel="alternate"/>
<author>
<name>Redwine, Robert P.</name>
</author>
<id>https://hdl.handle.net/1721.1/163824</id>
<updated>2025-11-22T03:17:27Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Dean for Undergraduate Education
Redwine, Robert P.
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Dean, MIT Sloan School of Management</title>
<link href="https://hdl.handle.net/1721.1/163823" rel="alternate"/>
<author>
<name>Schmalensee, Richard</name>
</author>
<id>https://hdl.handle.net/1721.1/163823</id>
<updated>2025-11-22T03:17:36Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Dean, MIT Sloan School of Management
Schmalensee, Richard
This report contains the following sections: Academic Program Updates; Other Initiatives
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Comparative Media Studies</title>
<link href="https://hdl.handle.net/1721.1/163822" rel="alternate"/>
<author>
<name>Jenkins, Henry</name>
</author>
<id>https://hdl.handle.net/1721.1/163822</id>
<updated>2025-11-22T03:17:49Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Comparative Media Studies
Jenkins, Henry
This report contains the following sections: Research; Fundraising; Governance; Graduate Admissions; Undergraduate Education; Events and Programs; Honors and Awards; Visiting Scholars; Publications
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Laboratory for Electromagnetic and Electronic Systems</title>
<link href="https://hdl.handle.net/1721.1/163821" rel="alternate"/>
<author>
<name>Kassakian, John G.</name>
</author>
<id>https://hdl.handle.net/1721.1/163821</id>
<updated>2025-11-22T03:17:15Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Laboratory for Electromagnetic and Electronic Systems
Kassakian, John G.
This report contains the following sections: Automotive Electrical and Electronic Systems; Modeling, Monitoring, and Control of Power Systems; Power Electronics and Electromechanics; Sensors, Nanotechnology, and Microelectromechanical Systems; Enhanced Ultracapacitor Analysis and Development; From Bioelectromechanics to Biomedicine; Honors and Awards
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dopamine modulation of aggression</title>
<link href="https://hdl.handle.net/1721.1/163820" rel="alternate"/>
<author>
<name>Dai, Bing</name>
</author>
<author>
<name>Lin, Dayu</name>
</author>
<id>https://hdl.handle.net/1721.1/163820</id>
<updated>2026-04-14T03:24:25Z</updated>
<published>2025-09-23T00:00:00Z</published>
<summary type="text">Dopamine modulation of aggression
Dai, Bing; Lin, Dayu
Rationale Aggression is an innate social behavior prevalent across animal species. However, in modern human society, inter-personal aggression is considered disruptive and detrimental to both families and communities. Clinically, antipsychotics, which primarily target dopamine (DA) receptors, have been widely used to suppress hyper-aggression. However, the mechanisms underlying the effect of the antipsychotics remain incompletely understood. Objectives We reviewed key steps in brain DA synthesis and summarized genetic and pharmacological evidence supporting the role of the mesolimbic DA system in aggression. Next, we discussed recent circuit studies that elucidate the DA action in modulating aggression-related brain regions. These lines of evidence collectively suggest that DA acts on different brain regions to facilitate aggression and self-learning, and signals the valence of the fighting experience.
</summary>
<dc:date>2025-09-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Computer Science and Artificial Intelligence Laboratory</title>
<link href="https://hdl.handle.net/1721.1/163819" rel="alternate"/>
<author>
<name>Brooks, Rodney</name>
</author>
<id>https://hdl.handle.net/1721.1/163819</id>
<updated>2025-11-22T03:17:33Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Computer Science and Artificial Intelligence Laboratory
Brooks, Rodney
This report contains the following sections: Highlights; World Wide Web Consortium; Distinguished Lecture Series; Awards/Honors; Affirmative Action
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Ocean Engineering</title>
<link href="https://hdl.handle.net/1721.1/163818" rel="alternate"/>
<author>
<name>Schmidt, Henrik</name>
</author>
<id>https://hdl.handle.net/1721.1/163818</id>
<updated>2025-11-22T03:18:15Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Ocean Engineering
Schmidt, Henrik
This report contains the following sections: Current Goals and Objectives, Focus, and Priorities; Accomplishments; Administrative Initiatives; Strategic Planning; Future Plans; Personnel Information; Student Awards; Teaching and Curriculum; Current Research Projects;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Department of Mechanical Engineering</title>
<link href="https://hdl.handle.net/1721.1/163817" rel="alternate"/>
<author>
<name>Abeyaratne, Rohan</name>
</author>
<id>https://hdl.handle.net/1721.1/163817</id>
<updated>2025-11-22T03:17:21Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Department of Mechanical Engineering
Abeyaratne, Rohan
This report contains the following sections: Undergraduate Program; Graduate Program; Faculty Notes;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Institute for Soldier Nanotechnologies</title>
<link href="https://hdl.handle.net/1721.1/163816" rel="alternate"/>
<author>
<name>Thomas, Edwin L.</name>
</author>
<id>https://hdl.handle.net/1721.1/163816</id>
<updated>2025-11-22T03:17:38Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Institute for Soldier Nanotechnologies
Thomas, Edwin L.
This report contains the following sections: Research; Soldier Design Competition; Industrial Collaboration; Facilities; Outreach; Appointments, Visitors, and Awards; Future Plans
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Operations Research Center</title>
<link href="https://hdl.handle.net/1721.1/163815" rel="alternate"/>
<author>
<name>Orlin, James B.</name>
</author>
<author>
<name>Tsitsiklis, John N.</name>
</author>
<id>https://hdl.handle.net/1721.1/163815</id>
<updated>2025-11-22T03:18:29Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Operations Research Center
Orlin, James B.; Tsitsiklis, John N.
This report contains the following sections: Faculty, Students, Staff; Outreach and Professional Service; Operational Issues; Future Plans; Diversity; Professional Activities;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Whitaker College of Health Sciences and Technology</title>
<link href="https://hdl.handle.net/1721.1/163814" rel="alternate"/>
<author>
<name>Samson, Leona D.</name>
</author>
<author>
<name>Dedon, Peter C.</name>
</author>
<author>
<name>Wurtman, Richard J.</name>
</author>
<author>
<name>Fox, James G.</name>
</author>
<author>
<name>Gray, Martha L.</name>
</author>
<id>https://hdl.handle.net/1721.1/163814</id>
<updated>2025-11-22T03:17:22Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Whitaker College of Health Sciences and Technology
Samson, Leona D.; Dedon, Peter C.; Wurtman, Richard J.; Fox, James G.; Gray, Martha L.
This report contains the following sections: Center for Environmental Health Sciences; Research Cores; Core Facilities; Pilot Project Program; Plans for 2005; Clinical Research Center; Administration; Education; Affirmative Action; Research Activities; Center for Experimental Pharmacology and Therapeutics; Computer Facility; Core Laboratory/Mass Spectrometry Facility; Research Highlights; CRC Investigator-Initiated Programs;  Division of Comparative Medicine; Facility Management and Animal Care; Research Activities; Academic Activities; Committee on Animal Care Activities; Harvard-MIT Division of Health Sciences and Technology
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Vice President for Research and Associate Provost</title>
<link href="https://hdl.handle.net/1721.1/163813" rel="alternate"/>
<author>
<name>Gast, Alice P.</name>
</author>
<id>https://hdl.handle.net/1721.1/163813</id>
<updated>2025-11-22T03:17:19Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Vice President for Research and Associate Provost
Gast, Alice P.
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Office of Government and Community Relations</title>
<link href="https://hdl.handle.net/1721.1/163812" rel="alternate"/>
<author>
<name>Gallop, Sarah E.</name>
</author>
<author>
<name>Parravano, Paul</name>
</author>
<id>https://hdl.handle.net/1721.1/163812</id>
<updated>2025-11-22T03:17:50Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Office of Government and Community Relations
Gallop, Sarah E.; Parravano, Paul
This report contains the following sections: Local Government Relations; Federal Government Relations; Community Relations; Schools; Business; Community Service Fund
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Office of the President: In Special Recognition</title>
<link href="https://hdl.handle.net/1721.1/163811" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/163811</id>
<updated>2025-11-22T03:17:56Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Office of the President: In Special Recognition
This report contains the following sections: Honors and Awards; In Memoriam;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Humanities, Arts, and Social Sciences Education Office</title>
<link href="https://hdl.handle.net/1721.1/163810" rel="alternate"/>
<author>
<name>Davis, Bette</name>
</author>
<id>https://hdl.handle.net/1721.1/163810</id>
<updated>2025-11-22T03:17:48Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Humanities, Arts, and Social Sciences Education Office
Davis, Bette
This report contains the following sections: HASS Enrollment Statistics by Field and Subject—Recent Trends; HASS Concentrations: Patterns of Popularity; HASS Minor Programs; Harvard Cross-Registration; Undergraduate Degrees Granted in SHASS; Undergraduate Majors in SHASS; Honors and Awards Granted to Undergraduate Majors in SHASS;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, School of Humanities, Arts, and Social Sciences</title>
<link href="https://hdl.handle.net/1721.1/163809" rel="alternate"/>
<author>
<name>Khoury, Philip S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163809</id>
<updated>2025-11-22T03:17:13Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, School of Humanities, Arts, and Social Sciences
Khoury, Philip S.
This report contains the following sections: Undergraduate Education; Affirmative Action; Honors and Awards; Fundraising; Faculty Promotions, Administrative Changes, and Retirements;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, iCampus</title>
<link href="https://hdl.handle.net/1721.1/163808" rel="alternate"/>
<author>
<name>Bisbee, Rebecca</name>
</author>
<id>https://hdl.handle.net/1721.1/163808</id>
<updated>2025-11-22T03:17:43Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, iCampus
Bisbee, Rebecca
This report contains the following sections: iCampus Research; Learning Web Services; iLab: Sharing Laboratory Equipment via Web Services; iMoat: Shared Services for Writing Instruction; Reinventing the Classroom with Educational Technology; Computer Science; Physics; Overview of Other Faculty Research; Student Projects;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, List Visual Arts Center</title>
<link href="https://hdl.handle.net/1721.1/163807" rel="alternate"/>
<author>
<name>Farver, Jane</name>
</author>
<id>https://hdl.handle.net/1721.1/163807</id>
<updated>2025-11-22T03:17:18Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, List Visual Arts Center
Farver, Jane
This report contains the following sections: Current Goals; Accomplishments; Exhibitions; Dean’s Gallery at the Sloan School; Interpretive Program Highlights; Collections; Permanent Collection; Percent for Art; Student Loan Art Collection; Administrative Changes; Finances/Funding; Future Goals; Personnel Information; Advisory Committee
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Plasma Science and Fusion Center</title>
<link href="https://hdl.handle.net/1721.1/163806" rel="alternate"/>
<author>
<name>Porkolab, Miklos</name>
</author>
<id>https://hdl.handle.net/1721.1/163806</id>
<updated>2025-11-22T03:18:11Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Plasma Science and Fusion Center
Porkolab, Miklos
This report contains the following sections: Alcator Division; Physics Research Division; Waves and Beams Division; Fusion Engineering and Technology Division; Plasma Technology Division; Educational Outreach Programs; Awards, Appointments, and Promotions;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Center for Materials Science and Engineering</title>
<link href="https://hdl.handle.net/1721.1/163805" rel="alternate"/>
<author>
<name>Rubner, Michael F.</name>
</author>
<id>https://hdl.handle.net/1721.1/163805</id>
<updated>2025-11-22T03:17:08Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Center for Materials Science and Engineering
Rubner, Michael F.
This report contains the following sections: Administration, Management, and Research; Interdisciplinary Research Programs; Seed Projects; Shared Experimental Facilities; Collaboration, Outreach and Knowledge Transfer; Education and Human Resources; Pre-College Education; Undergraduate Education; Graduate Education; Colloquia
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, International Scholars Office</title>
<link href="https://hdl.handle.net/1721.1/163804" rel="alternate"/>
<author>
<name>Rosser, Penny</name>
</author>
<id>https://hdl.handle.net/1721.1/163804</id>
<updated>2025-11-22T03:17:07Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, International Scholars Office
Rosser, Penny
This report contains the following sections: MIT’S International Scholar Population FY2004; MIT Initiatives and the ISO; Primary Activities and Accomplishments; Sarah and Thomas Kailath International Scholars Fund; Technology; Personnel
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Laboratory for Energy and the Environment</title>
<link href="https://hdl.handle.net/1721.1/163803" rel="alternate"/>
<author>
<name>Marks, David H.</name>
</author>
<id>https://hdl.handle.net/1721.1/163803</id>
<updated>2025-11-22T03:17:23Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Laboratory for Energy and the Environment
Marks, David H.
This report contains the following sections: Component Programs; Alliance for Global Sustainability; MIT/AGS Consortium on Environmental Challenges; Carbon Capture and Sequestration Technologies Program; Analysis Group for Regional Electricity Alternatives; Political Economy and Technology Policy Group; Affiliated Research; Building Technology Program; Center for Advanced Nuclear Energy Systems; Sloan Automotive Laboratory; Center for Energy and Environmental Policy Research; Joint Program on the Science and Policy of Global Change; Education and Curriculum Initiatives ;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, McGovern Institute for Brain Research</title>
<link href="https://hdl.handle.net/1721.1/163802" rel="alternate"/>
<author>
<name>Sharp, Phillip A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163802</id>
<updated>2025-11-22T03:18:20Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, McGovern Institute for Brain Research
Sharp, Phillip A.
This report contains the following sections: Personnel; Activities; Awards and Honors; Research Accomplishments;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2004, Office of the President: Statistics of the Year</title>
<link href="https://hdl.handle.net/1721.1/163801" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/163801</id>
<updated>2025-11-22T03:17:17Z</updated>
<published>2004-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2004, Office of the President: Statistics of the Year
This report contains the following sections: Registration; Degrees Awarded; Financial Aid; MIT Careers Office; Private Support; Finances; Facilities and Campus Environment;
</summary>
<dc:date>2004-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Singularities of Ricci flow and diffeomorphisms</title>
<link href="https://hdl.handle.net/1721.1/163800" rel="alternate"/>
<author>
<name>Colding, Tobias H.</name>
</author>
<author>
<name>Minicozzi, William P.</name>
</author>
<id>https://hdl.handle.net/1721.1/163800</id>
<updated>2026-04-14T03:24:27Z</updated>
<published>2025-09-22T00:00:00Z</published>
<summary type="text">Singularities of Ricci flow and diffeomorphisms
Colding, Tobias H.; Minicozzi, William P.
We solve a well-known open problem in Ricci flow: Strong rigidity of cylinders. Strong rigidity is an illustration of a shrinker principle that uniqueness radiates out from a compact set. It implies that if one tangent flow at a future singular point is a cylinder, then all tangent flows are. At the heart of this problem in Ricci flow is comparing and recognizing metrics. This can be rather complicated because of the group of diffeomorphisms. Two metrics, that could even be the same, could look completely different in different coordinates. This is the gauge problem. Often it can be avoided if one uses some additional structure of the particular situation. The gauge problem is subtle for non-compact spaces without additional structure. We solve this gauge problem by solving a nonlinear system of PDEs. The PDE produces a diffeomorphism that fixes an appropriate gauge in the spirit of the slice theorem for group actions. We then show optimal bounds for the displacement function of the diffeomorphism. Strong rigidity relies on gauge fixing and several other new ideas. One of these is “propagation of almost splitting”, another is quadratic rigidity in the right gauge, and a third is an optimal polynomial growth bound for PDEs that holds in great generality.
</summary>
<dc:date>2025-09-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Parametric, second-order cone representable model of fairness for decision-making problems</title>
<link href="https://hdl.handle.net/1721.1/163799" rel="alternate"/>
<author>
<name>Sundar, Kaarthik</name>
</author>
<author>
<name>Deka, Deepjyoti</name>
</author>
<author>
<name>Bent, Russell</name>
</author>
<id>https://hdl.handle.net/1721.1/163799</id>
<updated>2026-04-14T03:24:28Z</updated>
<published>2025-04-10T00:00:00Z</published>
<summary type="text">A Parametric, second-order cone representable model of fairness for decision-making problems
Sundar, Kaarthik; Deka, Deepjyoti; Bent, Russell
The article develops a parametric model of fairness called “ ε -fairness” that can be represented using a single second-order cone constraint and incorporated into existing decision-making problem formulations without impacting the complexity of solution techniques. We develop the model from the fundamental result of finite-dimensional norm equivalence in linear algebra and show that this model has a closed-form relationship to an existing metric for measuring fairness widely used in the literature. Finally, a simple case study on the optimal operation of a damaged power transmission network illustrates its effectiveness.
</summary>
<dc:date>2025-04-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Semiclassical Measures for Complex Hyperbolic Quotients</title>
<link href="https://hdl.handle.net/1721.1/163798" rel="alternate"/>
<author>
<name>Athreya, Jayadev</name>
</author>
<author>
<name>Dyatlov, Semyon</name>
</author>
<author>
<name>Miller, Nicholas</name>
</author>
<id>https://hdl.handle.net/1721.1/163798</id>
<updated>2025-11-22T03:15:00Z</updated>
<published>2025-08-28T00:00:00Z</published>
<summary type="text">Semiclassical Measures for Complex Hyperbolic Quotients
Athreya, Jayadev; Dyatlov, Semyon; Miller, Nicholas
We study semiclassical measures for Laplacian eigenfunctions on compact complex hyperbolic quotients. Geodesic flows on these quotients are a model case of hyperbolic dynamical systems with different expansion/contraction rates in different directions. We show that the support of any semiclassical measure is either equal to the entire cosphere bundle or contains the cosphere bundle of a compact immersed totally geodesic complex submanifold. The proof uses the one-dimensional fractal uncertainty principle of Bourgain–Dyatlov (Ann. Math. (2) 187(3):825–867, 2018) along the fast expanding/contracting directions, in a way similar to the work of Dyatlov–Jézéquel (Ann. Henri Poincaré, 2023) in the toy model of quantum cat maps, together with a description of the closures of fast unstable/stable trajectories relying on Ratner theory.
</summary>
<dc:date>2025-08-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>A divisor generating q-series and cumulants arising from random graphs</title>
<link href="https://hdl.handle.net/1721.1/163797" rel="alternate"/>
<author>
<name>Agarwal, Archit</name>
</author>
<author>
<name>Bhoria, Subhash C.</name>
</author>
<author>
<name>Eyyunni, Pramod</name>
</author>
<author>
<name>Maji, Bibekananda</name>
</author>
<author>
<name>Wakhare, Tanay</name>
</author>
<id>https://hdl.handle.net/1721.1/163797</id>
<updated>2025-11-22T03:15:30Z</updated>
<published>2025-11-20T00:00:00Z</published>
<summary type="text">A divisor generating q-series and cumulants arising from random graphs
Agarwal, Archit; Bhoria, Subhash C.; Eyyunni, Pramod; Maji, Bibekananda; Wakhare, Tanay
Uchimura, in 1987, introduced a probability generating function for a random variable X and using properties of this function, he discovered an interesting q-series identity. He further showed that the m-th cumulant with respect to the random variable X is nothing but the generating function for the generalized divisor function σ m - 1 ( n ) . Simon, Crippa, and Collenberg, in 1993, explored the G n , p -model of a random acyclic digraph and defined a random variable γ n ∗ ( 1 ) . Quite interestingly, they found links between the limit of its mean and the generating function for the divisor function d(n). Later in 1997, Andrews, Crippa and Simon extended these results using q-series techniques. They calculated the limit of the mean and the variance of the random variable γ n ∗ ( 1 ) which correspond to the first and second cumulants. In this paper, we generalize the result of Andrews, Crippa and Simon by calculating the limit of the t-th cumulant in terms of the generalized divisor function. Furthermore, we also discover limit forms for identities of Uchimura and Dilcher. This provides a fourth side to the Uchimura–Ramanujan–divisor-type three-way partition identities expounded by the first four authors recently.
</summary>
<dc:date>2025-11-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Arithmetic properties encoded in undermonoids</title>
<link href="https://hdl.handle.net/1721.1/163796" rel="alternate"/>
<author>
<name>Gotti, Felix</name>
</author>
<author>
<name>Li, Bangzheng</name>
</author>
<id>https://hdl.handle.net/1721.1/163796</id>
<updated>2026-04-14T03:24:11Z</updated>
<published>2025-09-19T00:00:00Z</published>
<summary type="text">Arithmetic properties encoded in undermonoids
Gotti, Felix; Li, Bangzheng
Let M be a cancellative and commutative monoid. A submonoid N of M is called an undermonoid if the Grothendieck groups of M and N coincide. For a given property p , we are interested in providing an answer to the following main question: does it suffice to check that all undermonoids of M satisfy p to conclude that all submonoids of M satisfy p ? In this paper, we give a positive answer to this question for the property of being atomic, and then we prove that if M is hereditarily atomic (i.e., every submonoid of M is atomic), then M must satisfy the ACCP, proving a recent conjecture posed by Vulakh and the first author. We also give positive answers to our main question for the following well-studied factorization properties: the bounded factorization property, half-factoriality, and length-factoriality. Finally, we determine all the monoids whose submonoids/undermonoids are half-factorial/length-factorial.
</summary>
<dc:date>2025-09-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>The rocky road to modernity: an assessment of Pakistan’s 75 years</title>
<link href="https://hdl.handle.net/1721.1/163795" rel="alternate"/>
<author>
<name>Hoodbhoy, Pervez</name>
</author>
<id>https://hdl.handle.net/1721.1/163795</id>
<updated>2026-04-14T03:29:14Z</updated>
<published>2022-12-12T00:00:00Z</published>
<summary type="text">The rocky road to modernity: an assessment of Pakistan’s 75 years
Hoodbhoy, Pervez
To assess whether Pakistan is moving towards or away from modernity I examine here the evolution of three key aspects: the overall idea system of society, the political system, and national culture. A meaningful analysis must begin with pre-colonial India, examine how British rule made fundamental changes, and the emergence of Pakistan as a result of Muslim religious identity. Although the beginnings of Pakistani modernity were shaky, the earlier inclination was to equalise with the developed world at large. In the mid-1980s this changed profoundly with the advent of political Islam, explicit repudiation of overt forms of western modernity, and a sharply increased tendency to seek examplars in the Islamic past. That trend has since accelerated under the influence of social media. But most Pakistanis, I argue, still want to hedge their bets and seek the fruits of modernity within a framework that they perceive as not inimical to their faith in Islam.
</summary>
<dc:date>2022-12-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Precipitate Size in GRCop-42 and GRCop-84 Cu-Cr-Nb Alloy Gas Atomized Powder and L-PBF Additive Manufactured Material</title>
<link href="https://hdl.handle.net/1721.1/163794" rel="alternate"/>
<author>
<name>Seltzman, AH</name>
</author>
<author>
<name>Wukitch, SJ</name>
</author>
<id>https://hdl.handle.net/1721.1/163794</id>
<updated>2026-04-14T03:29:12Z</updated>
<published>2023-01-26T00:00:00Z</published>
<summary type="text">Precipitate Size in GRCop-42 and GRCop-84 Cu-Cr-Nb Alloy Gas Atomized Powder and L-PBF Additive Manufactured Material
Seltzman, AH; Wukitch, SJ
Laser powder bed fusion (L-PBF) of Glenn Research Copper 42 or 84 (GRCop-42 or GRCop-84) produces a Cr2Nb precipitation-hardened high-conductivity copper alloy with tensile strength superior to other competing copper alloys. Precipitate diameters within GRCop-42 gas-atomized powder increase with powder diameter due to slower cooling rates, however, unlike GRCop-84, no threshold diameter above which extensive precipitate agglomerations form was observed in GRCop-42. Large Cr2Nb crystals were observed in GRCop-42 powder particles, implying formation within the crucible melt. A consistent precipitate volume of ~7% over a range of powder particle diameters indicated a consistent atomization process. Occasional voids were observed in GRCop-42 powder. Precipitate size was refined in L-PBF GRCop-42 to a greater extent than in GRCop-84, improving Orowan strengthening, however, this benefit was lost after heat treatment due to greater coarsening of precipitates. Precipitates in GRCop-42 accumulated on grain boundaries during heat treatment to a greater extent than in GRCop-84.
</summary>
<dc:date>2023-01-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>US-Russian partnerships in science: working with differences</title>
<link href="https://hdl.handle.net/1721.1/163793" rel="alternate"/>
<author>
<name>Dezhina, Irina</name>
</author>
<author>
<name>Wood, Elizabeth A</name>
</author>
<id>https://hdl.handle.net/1721.1/163793</id>
<updated>2026-04-14T03:29:16Z</updated>
<published>2022-02-16T00:00:00Z</published>
<summary type="text">US-Russian partnerships in science: working with differences
Dezhina, Irina; Wood, Elizabeth A
In the early 1990s, Russian and US observers were pessimistic about Russian science and its global integration. Yet scientists from the two countries were actively collaborating in new ways nonetheless. In order to explore the nature of those collaborations, we conducted open-ended interviews with 13 US scientists and 13 in Russia who collaborated trans-nationally in 1995–2014. Our results suggest that recognizing and working with differences benefited these colleagues. Despite ongoing political tensions and differences in scientific cultures, respondents told us that understanding those differences – in funding, cultures of doing science, institutional structures, and treatment of graduate students – helped them avoid missteps. Respect for each other’s country’s scientific contributions, interpersonal diplomacy, and personal interconnections further strengthened their work together. Diaspora scientists in particular, played a positive role as mediators and cultural interpreters.
</summary>
<dc:date>2022-02-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Agrammatic output in non-fluent, including Broca’s, aphasia as a rational behavior</title>
<link href="https://hdl.handle.net/1721.1/163792" rel="alternate"/>
<author>
<name>Fedorenko, Evelina</name>
</author>
<author>
<name>Ryskin, Rachel</name>
</author>
<author>
<name>Gibson, Edward</name>
</author>
<id>https://hdl.handle.net/1721.1/163792</id>
<updated>2026-04-14T03:29:19Z</updated>
<published>2022-11-18T00:00:00Z</published>
<summary type="text">Agrammatic output in non-fluent, including Broca’s, aphasia as a rational behavior
Fedorenko, Evelina; Ryskin, Rachel; Gibson, Edward
Background: Speech of individuals with non-fluent, including Broca's, aphasia is often characterized as "agrammatic" because their output mostly consists of nouns and, to a lesser extent, verbs and lacks function words, like articles and prepositions, and correct morphological endings. Among the earliest accounts of agrammatic output in the early 1900s was the "economy of effort" idea whereby agrammatic output is construed as a way of coping with increases in the cost of language production. This idea resurfaced in the 1980s, but in general, the field of language research has largely focused on accounts of agrammatism that postulated core deficits in syntactic knowledge.&#13;
Aims: We here revisit the economy of effort hypothesis in light of increasing emphasis in cognitive science on rational and efficient behavior.&#13;
Main contribution: The critical idea is as follows: there is a cost per unit of linguistic output, and this cost is greater for patients with non-fluent aphasia. For a rational agent, this increase leads to shorter messages. Critically, the informative parts of the message should be preserved and the redundant ones (like the function words and inflectional markers) should be omitted. Although economy of effort is unlikely to provide a unifying account of agrammatic output in all patients-the relevant population is too heterogeneous and the empirical landscape too complex for any single-factor explanation-we argue that the idea of agrammatic output as a rational behavior was dismissed prematurely and appears to provide a plausible explanation for a large subset of the reported cases of expressive aphasia.&#13;
Conclusions: The rational account of expressive agrammatism should be evaluated more carefully and systematically. On the basic research side, pursuing this hypothesis may reveal how the human mind and brain optimize communicative efficiency in the presence of production difficulties. And on the applied side, this construal of expressive agrammatism emphasizes the strengths of some patients to flexibly adapt utterances in order to communicate in spite of grammatical difficulties; and focusing on these strengths may be more effective than trying to "fix" their grammar.
</summary>
<dc:date>2022-11-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Burns on Strauss’s Liberating Liberal Education</title>
<link href="https://hdl.handle.net/1721.1/163791" rel="alternate"/>
<author>
<name>Rabieh, Linda R.</name>
</author>
<id>https://hdl.handle.net/1721.1/163791</id>
<updated>2026-04-14T03:29:18Z</updated>
<published>2023-01-18T00:00:00Z</published>
<summary type="text">Burns on Strauss’s Liberating Liberal Education
Rabieh, Linda R.
Leo Strauss on Democracy, Technology, and Liberal Education is an invaluable source of historical learning and philosophic guidance. Timothy W. Burns provides us with an in-depth and careful study of four important writings by Leo Strauss that examine the challenges faced by modern democracy and the ways in which liberal education can supply a modest remedy. According to Burns, Strauss understands the problems facing modern democracy to be rooted in the ascendancy of technology as the ultimate political aim, which prioritizes acquiring the means to pursue whatever ends we happen to desire rather than the good life itself (9). Subsequent developments in the service of this goal have led to our present situation, which Strauss characterizes as “hardly more than the interplay of mass taste with high grade but strictly speaking unprincipled efficiency” (13; see also 35, 69, 75–78). Burns sharpens his analysis of Strauss by comparing Strauss’s understanding of technology with that of Heidegger. In contrast to Heidegger’s argument for a “new thinking” to address modernity’s ills, Strauss looks to an older thinking from which he gleans an argument for liberal education, which he describes as the cultivation of “an aristocracy within democracy,” i.e., a class within society whose thinking is informed by both serious education in tradition and the study of the Great Books (15; see also 21, 84, 166). Although Burns’s book addresses many aspects of Strauss’s account of the way in which technology came to dominate politics and shape our modern world, I will focus on the thread throughout these essays that explains what Strauss means by liberal education and why it is needed today.
</summary>
<dc:date>2023-01-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Meta-UNet: enhancing skin-lesion segmentation with multimodal feature integration and uncertainty estimation</title>
<link href="https://hdl.handle.net/1721.1/163790" rel="alternate"/>
<author>
<name>Sikha, O. K.</name>
</author>
<author>
<name>Stone, Alaysia L. B.</name>
</author>
<author>
<name>González Ballester, Miguel A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163790</id>
<updated>2026-04-14T03:29:30Z</updated>
<published>2025-07-30T00:00:00Z</published>
<summary type="text">Meta-UNet: enhancing skin-lesion segmentation with multimodal feature integration and uncertainty estimation
Sikha, O. K.; Stone, Alaysia L. B.; González Ballester, Miguel A.
Purpose Medical image segmentation plays a crucial role in diagnostic pipelines. This study investigates the integration of lesion-specific metadata with image data to enhance segmentation accuracy and reduce predictive uncertainty. Methods The standard U-Net architecture was modified to incorporate lesion-specific metadata (Meta-UNet). Various integration strategies, including addition, weighted addition, and embedding layers, were evaluated. Additionally, a Bayesian Meta-UNet with Monte Carlo Dropout (MCD) was developed to assess the impact of metadata integration on model uncertainty. Uncertainty was quantified using measures such as Confidence Maps, Entropy, Mutual Information, and Expected Pairwise Kullback–Leibler divergence (EPKL). An aggregation strategy was also introduced to provide a single comprehensive uncertainty score per image. Results Meta-UNet outperformed standard U-Net across PH2, ISIC 2018, and HAM10000 datasets. On PH2, it achieved 84.64% accuracy and 90.62% Intersection over Union (IoU), compared to 83.36% and 89.19%. On ISIC 2018, U-Net scored 71.02 ± 6.69 IoU and 79.89 ± 5.09 Dice. On HAM10000, Meta-UNet achieved 88.66 ± 6.09 IoU and 93.42 ± 5.19 Dice. Meta-UNet reduced uncertainty (e.g., 0.149 vs. 0.1745), highlighting the benefit of metadata integration in improving segmentation accuracy and model confidence. Conclusion Integrating lesion-specific metadata into the U-Net architecture significantly improves segmentation accuracy and reduces predictive uncertainty. The inclusion of metadata enhances model confidence and reliability, underscoring its potential to strengthen diagnostic segmentation pipelines.
</summary>
<dc:date>2025-07-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Increasing the quantum tunneling probability through a learned ancilla-assisted protocol</title>
<link href="https://hdl.handle.net/1721.1/163789" rel="alternate"/>
<author>
<name>Testa, Renzo</name>
</author>
<author>
<name>Rodriguez Garcia, Alejandro</name>
</author>
<author>
<name>d’Onofrio, Alberto</name>
</author>
<author>
<name>Trombettoni, Andrea</name>
</author>
<author>
<name>Benatti, Fabio</name>
</author>
<author>
<name>Anselmi, Fabio</name>
</author>
<id>https://hdl.handle.net/1721.1/163789</id>
<updated>2026-04-14T03:21:02Z</updated>
<published>2025-08-05T00:00:00Z</published>
<summary type="text">Increasing the quantum tunneling probability through a learned ancilla-assisted protocol
Testa, Renzo; Rodriguez Garcia, Alejandro; d’Onofrio, Alberto; Trombettoni, Andrea; Benatti, Fabio; Anselmi, Fabio
Increasing the probability of quantum tunneling between two states, while keeping constant the resources of the underlying physical system, is a task of key importance in several physical contexts and platforms, including ultracold atoms confined by double-well potentials and superconducting qubits. We propose a novel ancillary assisted protocol showing that when a quantum system—such as a qubit—is coupled to an ancilla, one can learn the optimal ancillary component and its coupling, to increase the tunneling probability. As a case study, we consider a quantum system that, due to the presence of an energy detuning between two modes, cannot transfer by tunneling the particles from one mode to the other. However, it does it through a learned coupling with an ancillary system characterized by a detuning not smaller than the one of the primary system. We provide several illustrative examples for the paradigmatic case of a two-mode system and a two-mode ancilla in the presence of interacting particles. This reduces to a qubit coupled to an ancillary qubit in the case of one particle in the system and one in the ancilla. Our proposal provides an effective method to increase the tunneling probability in all those physical situations where no direct improvement of the system parameters, such as tunneling coefficient or energy detuning, is either possible or resource efficient. Finally, we also argue that the proposed strategy is not hampered by weak coupling to noisy environments.
</summary>
<dc:date>2025-08-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Attitudes, aboutness, and indirect restriction</title>
<link href="https://hdl.handle.net/1721.1/163788" rel="alternate"/>
<author>
<name>von Fintel, Kai</name>
</author>
<author>
<name>Pasternak, Robert</name>
</author>
<id>https://hdl.handle.net/1721.1/163788</id>
<updated>2026-04-14T03:20:59Z</updated>
<published>2025-08-04T00:00:00Z</published>
<summary type="text">Attitudes, aboutness, and indirect restriction
von Fintel, Kai; Pasternak, Robert
On its surface, a sentence like If Laura becomes a zombie, she wants you to shoot her looks like a plain conditional with the attitude want in its consequent. However, the most salient reading of this sentence is not about the desires of a hypothetical zombie-Laura. Rather, it asserts that the actual, non-zombie Laura has a certain restricted attitude: her present desires, when considering only possible states of affairs in which she becomes a zombie, are such that you shoot her. This can be contrasted with the shifted reading about zombie-desires that arises with conditional morphosyntax, e.g., If Laura became a zombie, she would want you to shoot her. Furthermore, as Blumberg and Holguín (J Semant 36(3):377–406, 2019) note, restricted attitude readings can also arise in disjunctive environments, as in Either a lot of people are on the deck outside, or I regret that I didn’t bring more friends. We provide a novel analysis of restricted and shifted readings in conditional and disjunctive environments, with a few crucial features. First, both restricted and shifted attitude conditionals are in fact “regular” conditionals with attitudes in their consequents, which accords with their surface-level appearance and contrasts with Pasternak’s (The mereology of attitudes, Ph.D. thesis, Stony Brook University, Stony Brook, NY, 2018) Kratzerian approach, in which the if-clause restricts the attitude directly. Second, whether the attitude is or is not shifted—i.e., zombie versus actual desires—is dependent on the presence or absence of conditional morphosyntax. And third, the restriction of the attitude is effected by means of aboutness, a concept for which we provide two potential implementations. We conclude by discussing our analysis’s prospective repercussions for the theory of conditionals more generally.
</summary>
<dc:date>2025-08-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sulfated dietary fiber protects gut microbiota from antibiotics</title>
<link href="https://hdl.handle.net/1721.1/163787" rel="alternate"/>
<author>
<name>Wu, Fuqing</name>
</author>
<author>
<name>Yu, Xiaoqian A.</name>
</author>
<author>
<name>Angeles-Albores, David</name>
</author>
<author>
<name>Erdman, Susan E.</name>
</author>
<author>
<name>Alm, Eric J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163787</id>
<updated>2026-04-14T03:21:01Z</updated>
<published>2025-08-06T00:00:00Z</published>
<summary type="text">Sulfated dietary fiber protects gut microbiota from antibiotics
Wu, Fuqing; Yu, Xiaoqian A.; Angeles-Albores, David; Erdman, Susan E.; Alm, Eric J.
Background Antibiotics, while essential for combating pathogens, also disrupt commensal bacteria, leading to gut microbiota imbalance and associated diseases. However, strategies to mitigate such collateral damage remain largely underexplored. Result In this study, we found that fucoidan, a marine polysaccharide derived from brown seaweed, provides broad-spectrum growth protection against multiple classes of antibiotics for human gut microbial isolates in vitro and for fecal communities ex vivo. This protective effect is dependent on the structural integrity, molecular weight, and sulfur content of the polysaccharide. Transcriptomic analysis showed that while fucoidan had minimal impact on baseline gene expression, it counteracted about 60% of the genes induced by kanamycin, suggesting a potential inhibition of kanamycin. Mass spectrometry results further showed that this inhibition may be due to the non-specific binding of fucoidan to kanamycin in solution. Finally, animal model experiments revealed that fucoidan facilitated the recovery of gut microbes following antibiotic treatment in vivo. Conclusion These findings suggest fucoidan could serve as a potential intervention to help protect gut microbiota during antibiotic therapy. Further studies are needed to evaluate its clinical potential and ensure it does not compromise antimicrobial efficacy. Video Abstract
</summary>
<dc:date>2025-08-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Additivity, Haag duality, and non-invertible symmetries</title>
<link href="https://hdl.handle.net/1721.1/163786" rel="alternate"/>
<author>
<name>Shao, Shu-Heng</name>
</author>
<author>
<name>Sorce, Jonathan</name>
</author>
<author>
<name>Srivastava, Manu</name>
</author>
<id>https://hdl.handle.net/1721.1/163786</id>
<updated>2026-04-14T03:24:20Z</updated>
<published>2025-08-01T00:00:00Z</published>
<summary type="text">Additivity, Haag duality, and non-invertible symmetries
Shao, Shu-Heng; Sorce, Jonathan; Srivastava, Manu
The algebraic approach to quantum field theory focuses on the properties of local algebras, whereas the study of (possibly non-invertible) global symmetries emphasizes global aspects of the theory and spacetime. We study connections between these two perspectives by examining how either of two core algebraic properties — “additivity” or “Haag duality” — is violated in a 1+1D CFT or lattice model restricted to the symmetric sector of a general global symmetry. For the Verlinde symmetry of a bosonic diagonal RCFT, we find that additivity is violated whenever the symmetry algebra contains an invertible element, while Haag duality is violated whenever it contains a non-invertible element. We find similar phenomena for the Kramers-Wannier and Rep(D8) non-invertible symmetries on spin chains.
</summary>
<dc:date>2025-08-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Observation of the Λ b 0 → J / ψ Ξ - K + and Ξ b 0 → J / ψ Ξ - π + decays</title>
<link href="https://hdl.handle.net/1721.1/163785" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/163785</id>
<updated>2026-04-14T03:20:57Z</updated>
<published>2025-07-28T00:00:00Z</published>
<summary type="text">Observation of the Λ b 0 → J / ψ Ξ - K + and Ξ b 0 → J / ψ Ξ - π + decays
The first observation of the Ξ b 0 → J / ψ Ξ - π + decay and the most precise measurement of the branching fraction of the Λ b 0 → J / ψ Ξ - K + decay are reported, using proton-proton collision data from the LHCb experiment collected in 2016–2018 at a centre-of-mass energy of 13 \,Te V , corresponding to an integrated luminosity of 5.4 \,fb - 1 . Using the Λ b 0 → J / ψ Λ and Ξ b - → J / ψ Ξ - decays as normalisation channels, the ratios of branching fractions are measured to be B ( Λ b 0 → J / ψ Ξ - K + ) B ( Λ b 0 → J / ψ Λ ) = ( 1.17 ± 0.14 ± 0.08 ) × 10 - 2 , B ( Ξ b 0 → J / ψ Ξ - π + ) B ( Ξ b - → J / ψ Ξ - ) = ( 11.9 ± 1.4 ± 0.6 ) × 10 - 2 , where the first uncertainty is statistical and the second systematic.
</summary>
<dc:date>2025-07-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Incorporating teacher effect when modeling student engagement in smart STEM classrooms: a cluster analysis</title>
<link href="https://hdl.handle.net/1721.1/163784" rel="alternate"/>
<author>
<name>Shreeve, Kelly</name>
</author>
<author>
<name>Perry, Anthony</name>
</author>
<author>
<name>Cassidy, Michael</name>
</author>
<author>
<name>Jessen Eller, Kathryn</name>
</author>
<author>
<name>Price, Beth</name>
</author>
<author>
<name>Jackson, Brandy</name>
</author>
<author>
<name>Celi, Leo</name>
</author>
<author>
<name>Lourentzou, Ismini</name>
</author>
<author>
<name>Hendrik, Luk</name>
</author>
<id>https://hdl.handle.net/1721.1/163784</id>
<updated>2026-04-14T03:24:12Z</updated>
<published>2025-09-10T00:00:00Z</published>
<summary type="text">Incorporating teacher effect when modeling student engagement in smart STEM classrooms: a cluster analysis
Shreeve, Kelly; Perry, Anthony; Cassidy, Michael; Jessen Eller, Kathryn; Price, Beth; Jackson, Brandy; Celi, Leo; Lourentzou, Ismini; Hendrik, Luk
Student engagement during learning serves as a critical predictor of academic success and plays a pivotal role in nurturing interest and readiness for future careers. As digital platforms become increasingly important to learning, it is essential that we understand how the interactions that students have with them reflects their engagement with learning. Previous research has often modeled engagement in a fully online context, where students pursue lessons independently and outside the influence of the classroom, paced and structured by digital systems. However, in STEM (Science, Technology, Engineering, and Math) subjects—and many others—learning more frequently happens in a physical classroom setting, under the guidance of a teacher, and involves interactions with other students and tangible objects. Here digital materials are used to scaffold and support learning but are not typically the focus of where learning happens. To study how student interactions with digital materials in these settings might allow us to measure, evaluate and help teachers enhance engagement, we have developed and deployed a smart digital learning platform that guides instruction and captures real-time multimodal student learning events in the physical STEM classroom. Previously we have shown that a subset of student interactions measured with this platform can be used to model student learning and generate human-like insights into engagement. Here we report on the significant influence that teachers have on student interactions with our smart platform in the STEM classroom, and the impact that this has on evaluating their engagement with learning. In an analysis of 108 high school students that used the platform to complete a 19-lesson data science curriculum in 5 different classrooms, we found significant differences between teachers both in the measured time students spent on the lesson and the percentage of the lesson they completed. In this setting, taking teacher influence into account improves the outcomes of our machine learning clustering models that group students based on their level of engagement. These findings inform how we develop smart classroom technology and machine learning applications that are globally informed but locally relevant, and support teachers to enhance student engagement and learning outcomes in dynamic and highly variable STEM classroom learning environments.
</summary>
<dc:date>2025-09-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>On determining αs(mZ) from dijets in e+e− thrust</title>
<link href="https://hdl.handle.net/1721.1/163783" rel="alternate"/>
<author>
<name>Benitez, Miguel A.</name>
</author>
<author>
<name>Hoang, André H.</name>
</author>
<author>
<name>Mateu, Vicent</name>
</author>
<author>
<name>Stewart, Iain W.</name>
</author>
<author>
<name>Vita, Gherardo</name>
</author>
<id>https://hdl.handle.net/1721.1/163783</id>
<updated>2026-04-14T03:19:02Z</updated>
<published>2025-07-25T00:00:00Z</published>
<summary type="text">On determining αs(mZ) from dijets in e+e− thrust
Benitez, Miguel A.; Hoang, André H.; Mateu, Vicent; Stewart, Iain W.; Vita, Gherardo
We update a previous N3LL′+ O α s 3 determination of the strong coupling from a global fit to thrust data by including newly available perturbative ingredients, upgrading the renormalization scales to include a fully canonical scaling region, and implementing the log resummation in a way which ensures the integrated cross section is unaffected by the leading 1/Q hadronization power corrections. Detailed discussions are provided concerning the stability of the results under variations of the fit range and the importance of summing up higher-order logarithmic terms for convergence and stability. We show that high-precision results can be achieved even when carrying out a more conservative fit by restricting the dataset to a region which is more clearly dominated by dijet events. This leads to αs(mZ) = 0.1136 ± 0.0012 with χ2/dof = 0.86, fully compatible with earlier results using a larger fit range. We also demonstrate that a number of additional effects associated to power corrections have a small impact on this fit result, including modifications to the renormalon substraction scheme for dijet power corrections and the inclusion of three-jet power correction models. The fit is also shown to provide very good agreement with data outside the fit range.
</summary>
<dc:date>2025-07-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurement of the ψ(2S) to J/ψ cross-section ratio as a function of centrality in PbPb collisions at √sNN = 5.02 TeV</title>
<link href="https://hdl.handle.net/1721.1/163782" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<author>
<name>LHCb collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163782</id>
<updated>2026-04-14T03:19:00Z</updated>
<published>2025-07-23T00:00:00Z</published>
<summary type="text">Measurement of the ψ(2S) to J/ψ cross-section ratio as a function of centrality in PbPb collisions at √sNN = 5.02 TeV
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.; LHCb collaboration
The ratio of prompt production cross-sections of ψ(2S) and J/ψ mesons in their&#13;
dimuon final state is measured as a function of centrality, using data collected by the LHCb&#13;
detector in PbPb collisions at √&#13;
sNN = 5.02 TeV, for the first time in the forward rapidity&#13;
region. The measured ratio shows no dependence on the collision centrality, and is compared&#13;
to the latest theory predictions and to the recent measurements in literature.
</summary>
<dc:date>2025-07-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Legal causation*</title>
<link href="https://hdl.handle.net/1721.1/163781" rel="alternate"/>
<author>
<name>Byrne, Thomas</name>
</author>
<id>https://hdl.handle.net/1721.1/163781</id>
<updated>2026-04-14T03:29:26Z</updated>
<published>2022-10-14T00:00:00Z</published>
<summary type="text">Legal causation*
Byrne, Thomas
I propose a new formalist account of legal (/proximate) causation – one that holds legal causation to be a matter of amoral, descriptive fact. The account starts with a metaphysical relation, akin to but distinct from common-sense causation, and it argues that legal causation aligns exactly with that relation; it is unified and principled.
</summary>
<dc:date>2022-10-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Space Architecture in Microgravity: TESSERAE Project for Large Scale Space Structures</title>
<link href="https://hdl.handle.net/1721.1/163780" rel="alternate"/>
<author>
<name>Ekblaw, Ariel</name>
</author>
<id>https://hdl.handle.net/1721.1/163780</id>
<updated>2026-04-14T03:29:29Z</updated>
<published>2022-11-21T00:00:00Z</published>
<summary type="text">Space Architecture in Microgravity: TESSERAE Project for Large Scale Space Structures
Ekblaw, Ariel
NASA and international partners are planning a crewed returnto the lunar surface in this decade, with the explicit long-termgoal of establishing sustainable lunar habitat infrastructure.International space agencies and several space entrepreneurshave shared plans for human missions to Mars in the 2030s.A menagerie of “new space” start-up companies is poised tosupport extensive activity for in-space habitation. Space explo-ration is entering an age of burgeoning commercial movement,fueled not only by the unique science experiments performedin microgravity but also by space tourism and a need for inhab-itable next-generation space architecture.Designers such as architects, engineers, and space structurepractitioners should aim to democratize access to space andchallenge the prevailing paradigm of space as an exclusive andinaccessible domain. In that case, they must build space architec-ture that can scale to welcome, safeguard, and inspire human-kind. Our space structures research program applies biomimeticprinciples to design modular, reconfigurable, and self-assemblingspace architecture. Currently, The team includes electrical andmechanical engineers, designers, a university-trained architect,and a spaceflight mission integration specialist.
</summary>
<dc:date>2022-11-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Infrastructure, Revenue, and Services: Non-State Governance in Iraq’s Disputed Territories</title>
<link href="https://hdl.handle.net/1721.1/163779" rel="alternate"/>
<author>
<name>Cancian, Matthew</name>
</author>
<author>
<name>Greenwald, Diana B.</name>
</author>
<id>https://hdl.handle.net/1721.1/163779</id>
<updated>2026-04-14T03:29:31Z</updated>
<published>2022-10-05T00:00:00Z</published>
<summary type="text">Infrastructure, Revenue, and Services: Non-State Governance in Iraq’s Disputed Territories
Cancian, Matthew; Greenwald, Diana B.
While states and non-state armed groups often engage in militarised conflict over contested territory, at other times they co-govern in a tenuous equilibrium. Using a survey of over 1,600 Kurdish soldiers (Peshmerga) and elite interviews, we investigate local variation in shared governance in one such context – the disputed territories of northern Iraq. Despite the area being under Kurdish military control, the Iraqi government continued to provide services in districts where it had pre-existing infrastructural capacity. However, in revenue-producing districts, Kurdish actors appropriated infrastructural power to provide services themselves. This illustrates that non-state governance strategies, and their outputs, can vary locally.
</summary>
<dc:date>2022-10-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Which Information Matters? Measuring Landlord Assessment of Tenant Screening Reports</title>
<link href="https://hdl.handle.net/1721.1/163778" rel="alternate"/>
<author>
<name>So, Wonyoung</name>
</author>
<id>https://hdl.handle.net/1721.1/163778</id>
<updated>2026-04-14T03:29:28Z</updated>
<published>2022-08-30T00:00:00Z</published>
<summary type="text">Which Information Matters? Measuring Landlord Assessment of Tenant Screening Reports
So, Wonyoung
This research studies how tenant screening services’ presentation ofinformation influences landlord decisions. Tenant screening services util-ize criminal records, eviction records, and credit score databases to pro-duce reports that landlords use to inform their decisions about who torent to. However, little is known about how landlords assess the infor-mation presented by tenant screening reports. Through a behavioralexperiment with landlords using simulated tenant screening reports,this study shows that landlords use blanket screening policies, that theyconflate the existence of tenant records with outcomes (e.g., eviction fil-ings with executed evictions), and that they display, on average, tenden-cies toward automation bias that are influenced by the risk assessmentsand scores presented by tenant screening reports. I argue that maintain-ing blanket screening policies and automation bias, combined with thedownstream effects of creating and using racially biased eviction andcriminal records, means that people of color will inevitably experiencedisproportionate exclusion from rental housing due to perceived “risk”on the part of landlords.
</summary>
<dc:date>2022-08-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Learning to make noise: toward a process model of artistic practice within experimental music scenes</title>
<link href="https://hdl.handle.net/1721.1/163777" rel="alternate"/>
<author>
<name>Woods, Peter J</name>
</author>
<id>https://hdl.handle.net/1721.1/163777</id>
<updated>2026-04-14T03:29:21Z</updated>
<published>2022-07-15T00:00:00Z</published>
<summary type="text">Learning to make noise: toward a process model of artistic practice within experimental music scenes
Woods, Peter J
Emerging at the intersection of industrial, punk, electronic music, and avant-garde jazz, noise music represents a niche subgenre reliant on loud, discordant, and arrhythmic sounds to make music. Yet despite its place within the (broadly defined) experimental music tradition, research into experimental music education has largely overlooked the genre. In response, I explore noise music through the lens of situated learning theory by addressing the following research question: how do noise musicians develop their artistic practice? To do so, I present findings from a comparative case study centered on two intertwined experimental music concert and workshop series focused on noise music. I begin by analyzing interview data from seventeen featured artists to construct a process model of artistic practice shared between musicians. I then employ bidirectional artifact analysis to trace the development of one novice participant in the series through this model. In turn, these findings not only illuminate how experimental musicians learn within informal settings but provide a potential model of learning for informal education communities more broadly. This study also holds implications for situated learning theory by asserting the influence of non-anthropocentric actors within communities of practice.
</summary>
<dc:date>2022-07-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Experiencer troubles: A reappraisal of the predicate-based asymmetry in child passives</title>
<link href="https://hdl.handle.net/1721.1/163776" rel="alternate"/>
<author>
<name>Aravind, Athulya</name>
</author>
<author>
<name>Koring, Loes</name>
</author>
<id>https://hdl.handle.net/1721.1/163776</id>
<updated>2026-04-14T03:29:30Z</updated>
<published>2022-10-17T00:00:00Z</published>
<summary type="text">Experiencer troubles: A reappraisal of the predicate-based asymmetry in child passives
Aravind, Athulya; Koring, Loes
Children’s understanding of passives of certain mental state predicates appears to lag behind passives of so-called actional predicates, an asymmetry that has posed a major empirical challenge for theories of passive acquisition. This paper argues against the dominant view in the literature that treats the predicate-based asymmetry as theoretically irrelevant. We instead propose a novel account that locates the problem in the syntax of experiencer constructions. Synthesizing theoretical and developmental evidence, we build a case for an early misanalysis of transitive subject-experiencer constructions as unaccusatives – structures that, by design, cannot passivize.
</summary>
<dc:date>2022-10-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Challenges and Opportunities of Machine Learning on Neutron and X-ray Scattering</title>
<link href="https://hdl.handle.net/1721.1/163775" rel="alternate"/>
<author>
<name>Drucker, Nathan C</name>
</author>
<author>
<name>Liu, Tongtong</name>
</author>
<author>
<name>Chen, Zhantao</name>
</author>
<author>
<name>Okabe, Ryotaro</name>
</author>
<author>
<name>Chotrattanapituk, Abhijatmedhi</name>
</author>
<author>
<name>Nguyen, Thanh</name>
</author>
<author>
<name>Wang, Yao</name>
</author>
<author>
<name>Li, Mingda</name>
</author>
<id>https://hdl.handle.net/1721.1/163775</id>
<updated>2026-04-14T03:29:29Z</updated>
<published>2022-10-12T00:00:00Z</published>
<summary type="text">Challenges and Opportunities of Machine Learning on Neutron and X-ray Scattering
Drucker, Nathan C; Liu, Tongtong; Chen, Zhantao; Okabe, Ryotaro; Chotrattanapituk, Abhijatmedhi; Nguyen, Thanh; Wang, Yao; Li, Mingda
Machine learning has been highly successful in boosting the re-search for neutron and X-ray scattering in the past few years [1, 2]. Fordiffraction, machine learning has shown great promise in phase map-ping [3, 4] and crystallographic information determination [5, 6]. Insmall-angle scattering, machine learning shows the power in reachingsuper-resolution [7, 8], reconstructing structures for macromolecules[9], and building structure-property relations [10]. As for absorptionspectroscopy, machine learning has enabled the rapid inverse searchfor optimized structures [11, 12] with improved spectral interpretability[13, 14]. Overall, as a data-driven approach, the success of the machine-learning-based scattering analysis depends on a few criteria, including:• Quantity of available experimental data, and feasibility to extractcertain data labels;• Quality of experimental data that can separate the intrinsic effect(e.g., materials properties) from extrinsic influence (e.g., instru-mental or data artifacts);• Feasibility to generate high volume of computational data;• Accuracy of computational data that can simulate the experimen-tal data.
</summary>
<dc:date>2022-10-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Scaled Process Priors for Bayesian Nonparametric Estimation of the Unseen Genetic Variation</title>
<link href="https://hdl.handle.net/1721.1/163774" rel="alternate"/>
<author>
<name>Camerlenghi, Federico</name>
</author>
<author>
<name>Favaro, Stefano</name>
</author>
<author>
<name>Masoero, Lorenzo</name>
</author>
<author>
<name>Broderick, Tamara</name>
</author>
<id>https://hdl.handle.net/1721.1/163774</id>
<updated>2026-04-14T03:29:27Z</updated>
<published>2022-09-29T00:00:00Z</published>
<summary type="text">Scaled Process Priors for Bayesian Nonparametric Estimation of the Unseen Genetic Variation
Camerlenghi, Federico; Favaro, Stefano; Masoero, Lorenzo; Broderick, Tamara
There is a growing interest in the estimation of the number of unseen features, mostly driven by biological applications. A recent work brought out a peculiar property of the popular completely random measures (CRMs) as prior models in Bayesian nonparametric (BNP) inference for the unseen-features problem: for fixed prior's parameters, they all lead to a Poisson posterior distribution for the number of unseen features, which depends on the sampling information only through the sample size. CRMs are thus not a flexible prior model for the unseen-features problem and, while the Poisson posterior distribution may be appealing for analytical tractability and ease of interpretability, its independence from the sampling information makes the BNP approach a questionable oversimplification, with posterior inferences being completely determined by the estimation of unknown prior's parameters. In this article, we introduce the stable-Beta scaled process (SB-SP) prior, and we show that it allows to enrich the posterior distribution of the number of unseen features arising under CRM priors, while maintaining its analytical tractability and interpretability. That is, the SB-SP prior leads to a negative Binomial posterior distribution, which depends on the sampling information through the sample size and the number of distinct features, with corresponding estimates being simple, linear in the sampling information and computationally efficient. We apply our BNP approach to synthetic data and to real cancer genomic data, showing that: (i) it outperforms the most popular parametric and nonparametric competitors in terms of estimation accuracy; (ii) it provides improved coverage for the estimation with respect to a BNP approach under CRM priors. Supplementary materials for this article are available online.
</summary>
<dc:date>2022-09-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Precision DIS thrust predictions for HERA and EIC</title>
<link href="https://hdl.handle.net/1721.1/163773" rel="alternate"/>
<author>
<name>Ee, June-Haak</name>
</author>
<author>
<name>Kang, Daekyoung</name>
</author>
<author>
<name>Lee, Christopher</name>
</author>
<author>
<name>Stewart, Iain W.</name>
</author>
<id>https://hdl.handle.net/1721.1/163773</id>
<updated>2025-11-20T03:08:12Z</updated>
<published>2025-07-24T00:00:00Z</published>
<summary type="text">Precision DIS thrust predictions for HERA and EIC
Ee, June-Haak; Kang, Daekyoung; Lee, Christopher; Stewart, Iain W.
We present predictions for the DIS 1-jettiness event shape τ 1 b , or DIS thrust, using the framework of Soft Collinear Effective Theory (SCET) for factorization, resummation of large logarithms, and rigorous treatment of nonperturbative power corrections, matched to fixed-order QCD away from the resummation region. Our predictions reach next-to-next-to-next-to-leading-logarithmic (N3LL) accuracy in resummed perturbation theory, matched to O ( α s 2 ) fixed-order QCD calculations obtained using the program NLOJet++. We include a rigorous treatment of hadronization corrections, which are universal across different event shapes and kinematic variables x and Q at leading power, and supplement them with a systematic scheme to remove O (ΛQCD) renormalon ambiguities in their definition. The framework of SCET allows us to connect smoothly the nonperturbative, resummation, and fixed-order regions, whose relative importance varies with x and Q, and to rigorously estimate theoretical uncertainties, across a broad range of x and Q covering existing experimental results from HERA as well as expected new measurements from the upcoming Electron- Ion-Collider (EIC). Our predictions will serve as an important benchmark for the EIC program, enabling the precise determination of the QCD strong coupling αs and the universal nonperturbative first moment parameter Ω1.
</summary>
<dc:date>2025-07-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Semi-classical dilaton gravity and the very blunt defect expansion</title>
<link href="https://hdl.handle.net/1721.1/163772" rel="alternate"/>
<author>
<name>Kruthoff, Jorrit</name>
</author>
<author>
<name>Levine, Adam</name>
</author>
<id>https://hdl.handle.net/1721.1/163772</id>
<updated>2025-11-20T03:08:09Z</updated>
<published>2025-07-22T00:00:00Z</published>
<summary type="text">Semi-classical dilaton gravity and the very blunt defect expansion
Kruthoff, Jorrit; Levine, Adam
We explore dilaton gravity with general dilaton potentials in the semi-classical limit viewed both as a gas of blunt defects and also as a semi-classical theory in its own right. We compare the exact defect gas picture with that obtained by naively canonically quantizing the theory in geodesic gauge. We find a subtlety in the canonical approach due to a non-perturbative ambiguity in geodesic gauge. Unlike in JT gravity, this ambiguity arises already at the disk level. This leads to a distinct mechanism from that in JT gravity by which the semi-classical approximation breaks down at low temperatures. Along the way, we propose that new, previously un-studied saddles contribute to the density of states of dilaton gravity. This in particular leads to a re-interpretation of the disk-level density of states in JT gravity in terms of two saddles with fixed energy boundary conditions: the disk, which caps off on the outer horizon, and another, sub-leading complex saddle which caps off on the inner horizon. When the theory is studied using a defect expansion, we show how the smooth classical geometries of dilaton gravity arise from a dense gas of very blunt defects in the GN → 0 limit. The classical saddle points arise from a balance between the attractive force on the defects toward negative dilaton and a statistical pressure from the entropy of the configuration. We end with speculations on the nature of the space-like singularity present inside black holes described by certain dilaton potentials.
</summary>
<dc:date>2025-07-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurement of the branching fraction ratio RK at large dilepton invariant mass</title>
<link href="https://hdl.handle.net/1721.1/163771" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<author>
<name>The LHCb collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163771</id>
<updated>2025-11-20T03:08:06Z</updated>
<published>2025-07-17T00:00:00Z</published>
<summary type="text">Measurement of the branching fraction ratio RK at large dilepton invariant mass
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.; The LHCb collaboration
A test of lepton universality between muons and electrons is performed using B+ → K+ℓ+ℓ− decays (where ℓ = e, μ), in the dilepton invariant-mass-squared region above 14.3 GeV2/c4. The data used for the measurement consists of beauty meson decays produced in proton-proton collisions, corresponding to an integrated luminosity of 9 fb−1, collected by the LHCb experiment between 2011 and 2018. The ratio of branching fractions for B+ → K+μ+μ− and B+ → K+e+e− decays is measured to be R K = 1.0 8 − 0.09 + 0.11 stat − 0.04 + 0.04 syst , which is consistent with the Standard Model prediction of unity. This constitutes the most precise test of lepton flavour universality using B+ → K+ℓ+ℓ− decays with dilepton invariant-mass-squared above the ψ(2S) mass, whilst being the first of its kind at a hadron collider.
</summary>
<dc:date>2025-07-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Iterating Sine, Equivalence Classes of Variable Changes, and Groups with Few Conjugacy Classes</title>
<link href="https://hdl.handle.net/1721.1/163770" rel="alternate"/>
<author>
<name>Etingof, Pavel</name>
</author>
<id>https://hdl.handle.net/1721.1/163770</id>
<updated>2025-11-20T03:08:07Z</updated>
<published>2025-07-23T00:00:00Z</published>
<summary type="text">Iterating Sine, Equivalence Classes of Variable Changes, and Groups with Few Conjugacy Classes
Etingof, Pavel
This is an expository paper about iterations of a&#13;
smooth real function f on [0, ) such that f(0) = 0,&#13;
f E&#13;
(0) = 1, and f(x) &lt; x for x &gt; 0, i.e., the sequence&#13;
defined by xn+1 = f(xn). This sequence has interesting asymptotics, whose study leads to the question of classifying conjugacy classes in the group of formal changes of variable y = f(x), i.e., formal series f(x) = x + a2x2 + a3x2 + ⋯&#13;
with real coefficients (under composition). The same classification applies over a finite field p for suitably truncated&#13;
series f, defining a family of p-groups that have the smallest&#13;
number of conjugacy classes for a given order, i.e., are the&#13;
“most noncommutative” finite groups currently known. The&#13;
paper should be accessible to undergraduates and at least&#13;
partially to advanced high school students.
</summary>
<dc:date>2025-07-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reports to the President for the year ended June 30, 2003, Volume 2</title>
<link href="https://hdl.handle.net/1721.1/163769" rel="alternate"/>
<author>
<name>Massachusetts Institute of Technology. Office of the President</name>
</author>
<id>https://hdl.handle.net/1721.1/163769</id>
<updated>2025-11-20T03:09:34Z</updated>
<published>2003-01-01T00:00:00Z</published>
<summary type="text">Reports to the President for the year ended June 30, 2003, Volume 2
Massachusetts Institute of Technology. Office of the President
A compilation of annual reports for the 2002-2003 academic year, including a report from the President of the Massachusetts Institute of Technology, as well as reports from the academic and administrative units of the Institute. The reports outline the year's goals, accomplishments, honors and awards, and future plans.
</summary>
<dc:date>2003-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantum information meets high-energy physics: input to the update of the European strategy for particle physics</title>
<link href="https://hdl.handle.net/1721.1/163768" rel="alternate"/>
<author>
<name>Afik, Yoav</name>
</author>
<author>
<name>Fabbri, Federica</name>
</author>
<author>
<name>Low, Matthew</name>
</author>
<author>
<name>Marzola, Luca</name>
</author>
<author>
<name>Aguilar-Saavedra, Juan A.</name>
</author>
<author>
<name>Altakach, Mohammad M.</name>
</author>
<author>
<name>Asbah, Nedaa A.</name>
</author>
<author>
<name>Bai, Yang</name>
</author>
<author>
<name>Banks, Hannah</name>
</author>
<author>
<name>Barr, Alan J.</name>
</author>
<author>
<name>Bernal, Alexander</name>
</author>
<author>
<name>Browder, Thomas E.</name>
</author>
<author>
<name>Caban, Paweł</name>
</author>
<author>
<name>Casas, J. A.</name>
</author>
<author>
<name>Cheng, Kun</name>
</author>
<author>
<name>Déliot, Frédéric</name>
</author>
<author>
<name>Demina, Regina</name>
</author>
<author>
<name>Di Domenico, Antonio</name>
</author>
<author>
<name>Eckstein, Michał</name>
</author>
<author>
<name>Fabbrichesi, Marco</name>
</author>
<id>https://hdl.handle.net/1721.1/163768</id>
<updated>2025-11-20T03:08:24Z</updated>
<published>2025-09-09T00:00:00Z</published>
<summary type="text">Quantum information meets high-energy physics: input to the update of the European strategy for particle physics
Afik, Yoav; Fabbri, Federica; Low, Matthew; Marzola, Luca; Aguilar-Saavedra, Juan A.; Altakach, Mohammad M.; Asbah, Nedaa A.; Bai, Yang; Banks, Hannah; Barr, Alan J.; Bernal, Alexander; Browder, Thomas E.; Caban, Paweł; Casas, J. A.; Cheng, Kun; Déliot, Frédéric; Demina, Regina; Di Domenico, Antonio; Eckstein, Michał; Fabbrichesi, Marco
Some of the most astonishing and prominent properties of Quantum Mechanics, such as entanglement and Bell nonlocality, have only been studied extensively in dedicated low-energy laboratory setups. The feasibility of these studies in the high-energy regime explored by particle colliders was only recently shown and has gathered the attention of the scientific community. For the range of particles and fundamental interactions involved, particle colliders provide a novel environment where quantum information theory can be probed, with energies exceeding by about 12 orders of magnitude those employed in dedicated laboratory setups. Furthermore, collider detectors have inherent advantages in performing certain quantum information measurements and allow for the reconstruction of the state of the system under consideration via quantum state tomography. Here, we elaborate on the potential, challenges, and goals of this innovative and rapidly evolving line of research and discuss its expected impact on both quantum information theory and high-energy physics.
</summary>
<dc:date>2025-09-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>On approximability of Satisfiable k -CSPs: I</title>
<link href="https://hdl.handle.net/1721.1/163767" rel="alternate"/>
<author>
<name>Bhangale, Amey</name>
</author>
<author>
<name>Khot, Subhash</name>
</author>
<author>
<name>Minzer, Dor</name>
</author>
<id>https://hdl.handle.net/1721.1/163767</id>
<updated>2025-11-20T03:08:03Z</updated>
<published>2025-07-22T00:00:00Z</published>
<summary type="text">On approximability of Satisfiable k -CSPs: I
Bhangale, Amey; Khot, Subhash; Minzer, Dor
We consider the P -CSP problem for 3-ary predicates P on satisfiable instances. We show that under certain conditions on P and a ( 1 , s ) integrality gap instance of the P -CSP problem, it can be translated into a dictatorship vs. quasirandomness test with perfect completeness and soundness s + ϵ , for every constant ϵ &gt; 0 . Compared to Ragahvendra (in: Proceedings of the fortieth annual ACM symposium on theory of computing (STOC), pp 245–254, 2008), we do not lose perfect completeness. This is particularly interesting as this test implies new hardness results on satisfiable constraint satisfaction problems, assuming the Rich 2-to-1 Games Conjecture by Braverman et al. (in: Lee JR (ed) Volume 185 of Leibniz international proceedings in informatics (LIPIcs), 27:1–27:20. Schloss Dagstuhl–Leibniz-Zentrum für Informatik, Dagstuhl, 2021b. https://drops.dagstuhl.de/opus/volltexte/2021/13566 ).Our result can be seen as the first step of a potentially long-term challenging program of characterizing optimal inapproximability of every satisfiable k -ary CSP. At the heart of the reduction is our main analytical lemma for a class of 3-ary predicates, which is a generalization of a lemma by Mossel (Geom Funct Anal 19(6):1713–1756, 2010). The lemma and a further generalization of it that we conjecture may be of independent interest.
</summary>
<dc:date>2025-07-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reports to the President for the year ended June 30, 2003, Volume 1</title>
<link href="https://hdl.handle.net/1721.1/163766" rel="alternate"/>
<author>
<name>Massachusetts Institute of Technology. Office of the President</name>
</author>
<id>https://hdl.handle.net/1721.1/163766</id>
<updated>2025-11-20T03:09:28Z</updated>
<published>2003-01-01T00:00:00Z</published>
<summary type="text">Reports to the President for the year ended June 30, 2003, Volume 1
Massachusetts Institute of Technology. Office of the President
A compilation of annual reports for the 2002-2003 academic year, including a report from the President of the Massachusetts Institute of Technology, as well as reports from the academic and administrative units of the Institute. The reports outline the year's goals, accomplishments, honors and awards, and future plans.
</summary>
<dc:date>2003-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurement of light-by-light scattering and the Breit-Wheeler process, and search for axion-like particles in ultraperipheral PbPb collisions at √sNN = 5.02 TeV</title>
<link href="https://hdl.handle.net/1721.1/163765" rel="alternate"/>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<author>
<name>Schieck, J.</name>
</author>
<author>
<name>Schöfbeck, R.</name>
</author>
<author>
<name>Schwarz, D.</name>
</author>
<author>
<name>The CMS collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163765</id>
<updated>2025-11-20T03:08:22Z</updated>
<published>2025-08-01T00:00:00Z</published>
<summary type="text">Measurement of light-by-light scattering and the Breit-Wheeler process, and search for axion-like particles in ultraperipheral PbPb collisions at √sNN = 5.02 TeV
Hayrapetyan, A.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.; Schieck, J.; Schöfbeck, R.; Schwarz, D.; The CMS collaboration
Measurements of light-by-light scattering (LbL, γγ → γγ) and the Breit-Wheeler process (BW, γγ → e+e−) are reported in ultraperipheral PbPb collisions at a centre-of-mass energy per nucleon pair of 5.02 TeV. The data sample, corresponding to an integrated luminosity of 1.7 nb−1, was collected by the CMS experiment at the CERN LHC in 2018. Events with an exclusively produced γγ or e+e− pair with invariant masses mγγ,ee &gt; 5 GeV, along with other fiducial criteria, are selected. The measured BW fiducial production cross section, σfid(γγ → e+e−) = 263.5 ± 1.8(stat) ± 17.8(syst) μb, as well as the differential distributions for various kinematic observables, are in agreement with leading-order quantum electrodynamics predictions complemented with final-state photon radiation. The measured differential BW cross sections allow discrimination between different theoretical descriptions of the photon flux of the lead ion. In the LbL final state, 26 exclusive diphoton candidate events are observed compared with 12.0 ± 2.9 expected for the background. Combined with previous results, the observed significance of the LbL signal with respect to the background-only hypothesis is above five standard deviations. The measured fiducial LbL scattering cross section, σfid(γγ → γγ) = 107 ± 24(stat) ± 13(syst) nb, is in agreement with next- to-leading-order predictions. Limits on the production of axion-like particles coupled to photons are set over the mass range 5–100 GeV, including the most stringent limits to date in the range of 5–10 GeV.
</summary>
<dc:date>2025-08-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The PLATO mission</title>
<link href="https://hdl.handle.net/1721.1/163764" rel="alternate"/>
<author>
<name>Rauer, Heike</name>
</author>
<author>
<name>Aerts, Conny</name>
</author>
<author>
<name>Cabrera, Juan</name>
</author>
<author>
<name>Deleuil, Magali</name>
</author>
<author>
<name>Erikson, Anders</name>
</author>
<author>
<name>Gizon, Laurent</name>
</author>
<author>
<name>Goupil, Mariejo</name>
</author>
<author>
<name>Heras, Ana</name>
</author>
<author>
<name>Walloschek, Thomas</name>
</author>
<author>
<name>Lorenzo-Alvarez, Jose</name>
</author>
<author>
<name>Marliani, Filippo</name>
</author>
<author>
<name>Martin-Garcia, César</name>
</author>
<author>
<name>Mas-Hesse, J. M.</name>
</author>
<author>
<name>O’Rourke, Laurence</name>
</author>
<author>
<name>Osborn, Hugh</name>
</author>
<author>
<name>Pagano, Isabella</name>
</author>
<author>
<name>Piotto, Giampaolo</name>
</author>
<id>https://hdl.handle.net/1721.1/163764</id>
<updated>2025-11-20T03:07:49Z</updated>
<published>2025-04-21T00:00:00Z</published>
<summary type="text">The PLATO mission
Rauer, Heike; Aerts, Conny; Cabrera, Juan; Deleuil, Magali; Erikson, Anders; Gizon, Laurent; Goupil, Mariejo; Heras, Ana; Walloschek, Thomas; Lorenzo-Alvarez, Jose; Marliani, Filippo; Martin-Garcia, César; Mas-Hesse, J. M.; O’Rourke, Laurence; Osborn, Hugh; Pagano, Isabella; Piotto, Giampaolo
PLATO (PLAnetary Transits and Oscillations of stars) is ESA’s M3 mission designed to detect and characterise extrasolar planets and perform asteroseismic monitoring of a large number of stars. PLATO will detect small planets (down to &lt;2R Earth ) around bright stars (&lt;11 mag), including terrestrial planets in the habitable zone of solar-like stars. With the complement of radial velocity observations from the ground, planets will be characterised for their radius, mass, and age with high accuracy (5%, 10%, 10% for an Earth-Sun combination respectively). PLATO will provide us with a large-scale catalogue of well-characterised small planets up to intermediate orbital periods, relevant for a meaningful comparison to planet formation theories and to better understand planet evolution. It will make possible comparative exoplanetology to place our Solar System planets in a broader context. In parallel, PLATO will study (host) stars using asteroseismology, allowing us to determine the stellar properties with high accuracy, substantially enhancing our knowledge of stellar structure and evolution. The payload instrument consists of 26 cameras with 12cm aperture each. For at least four years, the mission will perform high-precision photometric measurements. Here we review the science objectives, present PLATO‘s target samples and fields, provide an overview of expected core science performance as well as a description of the instrument and the mission profile towards the end of the serial production of the flight cameras. PLATO is scheduled for a launch date end 2026. This overview therefore provides a summary of the mission to the community in preparation of the upcoming operational phases.
</summary>
<dc:date>2025-04-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>DisruptionBench and Complimentary New Models: Two Advancements in Machine Learning Driven Disruption Prediction</title>
<link href="https://hdl.handle.net/1721.1/163763" rel="alternate"/>
<author>
<name>Spangher, Lucas</name>
</author>
<author>
<name>Bonotto, Matteo</name>
</author>
<author>
<name>Arnold, William</name>
</author>
<author>
<name>Chayapathy, Dhruva</name>
</author>
<author>
<name>Gallingani, Tommaso</name>
</author>
<author>
<name>Spangher, Alexander</name>
</author>
<author>
<name>Cannarile, Francesco</name>
</author>
<author>
<name>Bigoni, Daniele</name>
</author>
<author>
<name>de Marchi, Eliana</name>
</author>
<author>
<name>Rea, Cristina</name>
</author>
<id>https://hdl.handle.net/1721.1/163763</id>
<updated>2025-11-20T03:08:00Z</updated>
<published>2025-05-24T00:00:00Z</published>
<summary type="text">DisruptionBench and Complimentary New Models: Two Advancements in Machine Learning Driven Disruption Prediction
Spangher, Lucas; Bonotto, Matteo; Arnold, William; Chayapathy, Dhruva; Gallingani, Tommaso; Spangher, Alexander; Cannarile, Francesco; Bigoni, Daniele; de Marchi, Eliana; Rea, Cristina
Plasma disruptions remain a major obstacle to sustained commercial operation of tokamak-based fusion devices. Although machine learning (ML) methods have shown promise for predicting disruptions, their performance and generalizability suffer from a lack of common benchmarks and comprehensive multi-device evaluations. To address this, we present DisruptionBench, a new benchmarking platform designed to standardize how ML-driven disruption prediction systems are trained and evaluated on multi-machine data. DisruptionBench spans three devices - Alcator C-Mod, DIII-D, and EAST - and includes tasks of varying difficulty: zero-shot, few-shot, and many-shot training regimes to assess each model’s ability to transfer learned representations to new or data-limited machines. We evaluate four state-of-the-art ML architectures. Two are re-implementations of notable prior work: a random forest (Cristina Rea in PPCF 60:084008, 2018) and the Hybrid Deep Learner (HDL) (Zhu in NC 61: 026607, 2020). We also propose two new approaches tailored for disruption prediction: a transformer-based model inspired by GPT-2, capable of learning long-range temporal dependencies through self-attention, and a Continuous Convolutional Neural Network (CCNN) that leverages continuous kernels to capture subtle variations in plasma signals. Across the nine benchmarking tasks, the CCNN demonstrates consistently strong performance and achieves the highest overall Area Under the ROC Curve (AUC) in intra-machine tests (up to 0.97 on C-Mod). Nevertheless, the GPT-2-based approach and HDL can outperform CCNN in specific transfer scenarios, particularly when the test machine is underrepresented in training data. We further analyze the significance of memory length in capturing precursor phenomena, providing evidence that longer context windows can boost predictive accuracy.
</summary>
<dc:date>2025-05-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>From Crucible Steel to the Battlefield: Investigating a Unique Early Medieval Arrowhead from Anatolia</title>
<link href="https://hdl.handle.net/1721.1/163762" rel="alternate"/>
<author>
<name>Güder, Ümit</name>
</author>
<author>
<name>Yavaş, Alptekin</name>
</author>
<author>
<name>Demirel Gökalp, Zeliha</name>
</author>
<author>
<name>Taşan, Cemal C.</name>
</author>
<author>
<name>Raabe, Dierk</name>
</author>
<id>https://hdl.handle.net/1721.1/163762</id>
<updated>2025-11-20T03:08:19Z</updated>
<published>2025-06-06T00:00:00Z</published>
<summary type="text">From Crucible Steel to the Battlefield: Investigating a Unique Early Medieval Arrowhead from Anatolia
Güder, Ümit; Yavaş, Alptekin; Demirel Gökalp, Zeliha; Taşan, Cemal C.; Raabe, Dierk
An arrowhead that was recovered during the excavations of the lower city church of Byzantine Stronghold Amorium in central Anatolia has been subjected to archaeometric analysis. Coins discovered in the same context date the arrowhead to the Middle Byzantine period (ninth–tenth century CE). It is a three-bladed arrowhead with a needle-type tang. Metallography (OM, SEM), SEM–EDS and EBSD techniques were used to examine samples taken from the head and the tang sections of the arrowhead. The arrowhead was determined to be made of manganese-alloyed crucible steel (0.4–1% Mn), shaped through warm forging cycles and selectively quenched and tempered to enhance its mechanical properties. The hardened head, likely designed for armor penetration, along with the potential watered surface pattern (firind), suggests that the arrowhead functioned both as a weapon and a symbol of prestige. Historical sources and archaeometallurgical evidence link the arrowhead to mounted Turkic archers in the Abbasid army during the 838 CE Sack of Amorium. This study of the arrowhead revealed it to be the earliest crucible steel find and the only example of such an object manufactured from crucible steel discovered in medieval Anatolian excavations.
</summary>
<dc:date>2025-06-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bayesian Methods for Magnetic and Mechanical Optimization of Superconducting Magnets for Fusion</title>
<link href="https://hdl.handle.net/1721.1/163761" rel="alternate"/>
<author>
<name>Packman, Sam</name>
</author>
<author>
<name>Riva, Nicolò</name>
</author>
<author>
<name>Rodriguez-Fernandez, Pablo</name>
</author>
<id>https://hdl.handle.net/1721.1/163761</id>
<updated>2025-11-20T03:07:58Z</updated>
<published>2025-03-14T00:00:00Z</published>
<summary type="text">Bayesian Methods for Magnetic and Mechanical Optimization of Superconducting Magnets for Fusion
Packman, Sam; Riva, Nicolò; Rodriguez-Fernandez, Pablo
Stellarators as compact fusion power sources have incredible potential to help combat climate change. However, the task of making that a reality faces many challenges. This work uses Bayesian optimization, (BO) which is a method that is well suited to black-box optimizations, to address the complicated optimization problem inherent by stellarator design. In particular it focuses on the mechanical optimization necessary to withstand the Lorentz forces generated by the magnetic coils. This work leverages surrogate models that are constructed to integrate as much information as possible from the available data points, significantly reducing the number of required model evaluations. It showcases the efficacy of Bayesian optimization as a versatile tool for enhancing both magneto-static and mechanical properties within stellarator winding packs. Employing a suite of Bayesian optimization algorithms, we iteratively refine 2D and 3D models of solenoid and stellarator configurations, and demonstrate a 15% increase in optimization speed using multi-fidelity Bayesian optimization. For fusion technology to progresses from experimental stages to commercial viability, precise and efficient design methodologies will be essential. By emphasizing its modularity and transferability, our approach lays the foundation for streamlining optimization processes, facilitating the integration of fusion power into a sustainable energy infrastructure.
</summary>
<dc:date>2025-03-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Pseudo-Anosov representatives of stable Hamiltonian structures</title>
<link href="https://hdl.handle.net/1721.1/163760" rel="alternate"/>
<author>
<name>Zung, Jonathan</name>
</author>
<id>https://hdl.handle.net/1721.1/163760</id>
<updated>2025-11-20T03:08:20Z</updated>
<published>2025-09-08T00:00:00Z</published>
<summary type="text">Pseudo-Anosov representatives of stable Hamiltonian structures
Zung, Jonathan
A pseudo-Anosov homeomorphism of a surface is a canonical representative of its mapping class. Conditional on the foundations of symplectic field theory, we explain that a transitive pseudo-Anosov flow is similarly a canonical representative of its stable Hamiltonian class. It follows that there are finitely many pseudo-Anosov flows admitting positive Birkhoff sections on any given rational homology 3-sphere. This result has a purely topological consequence: any 3-manifold can be obtained in at most finitely many ways as p/q surgery on a fibered hyperbolic knot in S 3 for a slope p/q satisfying q ≥ 6 , p ≠ 0 , ± 1 , ± 2 mod q . The proof of the main theorem generalizes an argument of Barthelmé–Bowden–Mann.
</summary>
<dc:date>2025-09-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hindered segmental dynamics in associative protein hydrogels studied by neutron spin-echo spectroscopy</title>
<link href="https://hdl.handle.net/1721.1/163759" rel="alternate"/>
<author>
<name>Rao, Ameya</name>
</author>
<author>
<name>Carrick, Brian R</name>
</author>
<author>
<name>Yao, Helen</name>
</author>
<author>
<name>Olsen, Bradley D</name>
</author>
<id>https://hdl.handle.net/1721.1/163759</id>
<updated>2025-11-19T05:00:39Z</updated>
<published>2023-07-26T00:00:00Z</published>
<summary type="text">Hindered segmental dynamics in associative protein hydrogels studied by neutron spin-echo spectroscopy
Rao, Ameya; Carrick, Brian R; Yao, Helen; Olsen, Bradley D
Transient binding between associating macromolecules can cause qualitative changes to chain dynamics, including modes of conformational relaxation and diffusion, through tethering effects imparted by long-range connectivity. In this work, the role of binding on short-time segmental dynamics in associative polymer gels is investigated by neutron spin-echo (NSE) measurements on a class of model artificial coiled-coil proteins with a systematically varied architecture, probing timescales of 0.1–130 ns, and length scales close to the molecular radius of gyration. The results illustrate effects of transient cross-linking on chain dynamics on different timescales, manifested in changes in segmental relaxation behavior with variations in strand length, chain concentration, and sticker distribution (endblock- vs midblock-functionalized). In all gels, a short-time cooperative diffusion mode is seen over all wave vectors, analogous to a semidilute solution, with no transitions seen at any known structural length scale. However, the diffusion coefficients are found to decrease with increasing junction density across all gels, with the strand length and number of stickers per chain in each gel appearing to play a relatively minor role. The slowing of cooperative diffusion with junction density contrasts with classical predictions of a greater restoring force for fluctuation dissipation due to the increased elasticity, suggesting additional effects of the coiled-coil junctions such as an enhancement in local viscosity that slows dynamics. Notably, the relaxation rates for all gels can be rescaled by the interjunction spacing inferred from small-angle neutron scattering, where they collapse onto a master curve suggestive of self-similar dynamics even in networks with different strand lengths and chain architectures. On long timescales (but shorter than the junction exchange time), a slowing of network relaxation is observed, resulting in a nondecaying plateau in the spin-echo amplitude attributed to a freezing of chain dynamics due to tethering. A characteristic length scale corresponding to the extent of dynamic fluctuations is estimated for each gel, which appears to be smaller than the interjunction spacing but similar to the correlation blob size of the overlapping strands. The results indicate an important role of transient binding on molecular-scale dynamics in associative polymer gels, even on timescales shorter than the junction exchange time, in addition to its effects on long-range self-diffusion previously observed.
</summary>
<dc:date>2023-07-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Techno-economic assessment of co-production of edible bioplastic and food supplements from Spirulina</title>
<link href="https://hdl.handle.net/1721.1/163758" rel="alternate"/>
<author>
<name>Chalermthai, Bushra</name>
</author>
<author>
<name>Charoensuppanimit, Pongtorn</name>
</author>
<author>
<name>Nootong, Kasidit</name>
</author>
<author>
<name>Olsen, Bradley D</name>
</author>
<author>
<name>Assabumrungrat, Suttichai</name>
</author>
<id>https://hdl.handle.net/1721.1/163758</id>
<updated>2025-11-19T05:00:41Z</updated>
<published>2023-06-22T00:00:00Z</published>
<summary type="text">Techno-economic assessment of co-production of edible bioplastic and food supplements from Spirulina
Chalermthai, Bushra; Charoensuppanimit, Pongtorn; Nootong, Kasidit; Olsen, Bradley D; Assabumrungrat, Suttichai
Large amount of plastic wastes harming the environment have raised concerns worldwide on finding alternatives to non-biodegradable plastics. Microalgae has been found as a potential source for bioplastic production, besides its more common application in the pharmaceutical and nutraceutical industry. In this study, the objective was to techno-economically evaluate the large-scale co-production of Spirulina powder as food supplements and edible bioplastic for food packaging. The scale of production was large enough to satisfy 1% of local (Thailand) plastic demand (i.e., approx. 1200 MT y&lt;jats:sup&gt;−1&lt;/jats:sup&gt;), and 1% of the global Spirulina demand (approx. 1000 MT y&lt;jats:sup&gt;−1&lt;/jats:sup&gt;) as food supplements. Results showed that the co-production of the Spirulina powder and bioplastic revealed an attractive venture with a payback time (PBT) as low as 2.6 y and ROI as high as 38.5%. This was because the revenues generated were as high as US$ 55.6 million y&lt;jats:sup&gt;−1&lt;/jats:sup&gt;, despite high capital (US$ 55.7 million) and operating (US$ 34.9 million y&lt;jats:sup&gt;−1&lt;/jats:sup&gt;) costs. Sensitivity analysis showed differences in the profitability based on variations of major parameters in the study, where the split ratio of biomass used for food supplement versus bioplastic production and the bioplastic’s selling price were found to be the most sensitive.
</summary>
<dc:date>2023-06-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Counterfactual Worlds</title>
<link href="https://hdl.handle.net/1721.1/163757" rel="alternate"/>
<author>
<name>Brast-McKie, Benjamin</name>
</author>
<id>https://hdl.handle.net/1721.1/163757</id>
<updated>2025-11-19T04:59:39Z</updated>
<published>2025-06-03T00:00:00Z</published>
<summary type="text">Counterfactual Worlds
Brast-McKie, Benjamin
This paper extends Kit Fine’s (2012a, 2012b, 2017a, 2017b, 2017c) truthmaker framework to provide a novel task semantics for tensed counterfactual conditionals. Instead of taking possible worlds to be primitive elements in a model, possible worlds will be defined in terms of states, parthood, tasks, and times where the task relation encodes the possible transitions between states. Rather than invoking primitive relations for similarity or imposition, possible worlds will be compared at a time independent of that time’s past and future where the comparison will be carried out in modal and mereological terms. After reviewing motivations for this approach, I will provide the hyperintensional semantics for counterfactuals that is implemented in the model-checker software along with a unified logic for counterfactual, modal, and tense operators. I will then extend the language to include further tense operators in order to analyze forwards, backwards, and backtracking counterfactuals.
</summary>
<dc:date>2025-06-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tight mixed-integer optimization formulations for prescriptive trees</title>
<link href="https://hdl.handle.net/1721.1/163756" rel="alternate"/>
<author>
<name>Biggs, Max</name>
</author>
<author>
<name>Perakis, Georgia</name>
</author>
<id>https://hdl.handle.net/1721.1/163756</id>
<updated>2025-11-19T05:00:02Z</updated>
<published>2025-05-29T00:00:00Z</published>
<summary type="text">Tight mixed-integer optimization formulations for prescriptive trees
Biggs, Max; Perakis, Georgia
We focus on modeling the relationship between an input feature vector and the predicted outcome of a trained decision tree using mixed-integer optimization. This can be used in many practical applications where a decision tree or a tree ensemble is incorporated into an optimization problem to model the predicted outcomes of a decision. We propose novel tight mixed-integer optimization formulations for this problem. Existing formulations can be shown to have linear relaxations that have fractional extreme points, even for the simple case of modeling a single decision tree or a very large number of constraints, which leads to slow solve times in practice. A formulation we propose, based on a projected union of polyhedra approach, is ideal (i.e., the extreme points of the linear relaxation are integer when required) for a single decision tree. Although the formulation is generally not ideal for tree ensembles, it generally has fewer extreme points, leading to a faster time to solve. We also study formulations with a binary representation of the feature vector and present multiple approaches to tighten existing formulations. We show that fractional extreme points are removed when multiple splits are on the same feature. At an extreme, we prove that this results in an ideal formulation for a tree ensemble modeling a one-dimensional feature vector. Building on this result, we also show that these additional constraints result in significantly tighter linear relaxations when the feature vector is low dimensional.
</summary>
<dc:date>2025-05-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Adaptive optimization for prediction with missing data</title>
<link href="https://hdl.handle.net/1721.1/163755" rel="alternate"/>
<author>
<name>Bertsimas, Dimitris</name>
</author>
<author>
<name>Delarue, Arthur</name>
</author>
<author>
<name>Pauphilet, Jean</name>
</author>
<id>https://hdl.handle.net/1721.1/163755</id>
<updated>2025-11-19T04:59:54Z</updated>
<published>2025-03-24T00:00:00Z</published>
<summary type="text">Adaptive optimization for prediction with missing data
Bertsimas, Dimitris; Delarue, Arthur; Pauphilet, Jean
When training predictive models on data with missing entries, the most widely used and versatile approach is a pipeline technique where we first impute missing entries and then compute predictions. In this paper, we view prediction with missing data as a two-stage adaptive optimization problem and propose a new class of models, adaptive linear regression models, where the regression coefficients adapt to the set of observed features. We show that some adaptive linear regression models are equivalent to learning an imputation rule and a downstream linear regression model simultaneously instead of sequentially. We leverage this joint-impute-then-regress interpretation to generalize our framework to non-linear models. In settings where data is strongly not missing at random, our methods achieve a 2–10% improvement in out-of-sample accuracy.
</summary>
<dc:date>2025-03-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Designing Biodiversity Systems via Digital Kinships: Insights from Community Data Processes and Creative Practice</title>
<link href="https://hdl.handle.net/1721.1/163754" rel="alternate"/>
<author>
<name>Westerlaken, Michelle</name>
</author>
<id>https://hdl.handle.net/1721.1/163754</id>
<updated>2025-11-19T04:59:48Z</updated>
<published>2025-06-16T00:00:00Z</published>
<summary type="text">Designing Biodiversity Systems via Digital Kinships: Insights from Community Data Processes and Creative Practice
Westerlaken, Michelle
This study details how digital biodiversity data is used and gains meaning in local restoration projects, how these experiences contrast with large-scale innovation patterns, and what new design recommendations emerge from these insights. Digital innovations in biodiversity technologies are increasingly complex, fast-paced, and driven by technological capacities where data generation rather than biodiversity restoration risks becoming the primary goal. Focusing on a biodiversity restoration project with a living lab community in the Netherlands, this participatory research critically examines how plans for emerging technologies, such as biodiversity simulations and digital twins, contrast with local user relations to biodiversity data. Building on qualitative insights from six-months of fieldwork, a digital and physical data portal was designed to simulate ongoing technoscientific innovation and make their complex effects experientially available to users. Findings are brought directly in conversation with emerging technical features through four distinct themes with the aim to share user-insights and produce design recommendations for: environmental storytelling, prediction and future making, interactive dynamics, and simulation aesthetics. These themes articulate the community's preferences towards digital environments that support their nuanced, complex relationships with local biodiversity, suggesting a shift from top-down technocentric approaches to more community-driven and restoration-focused models. Based on this study, design recommendations are articulated for each of these four themes contributing detailed empirical and practice-oriented insights that propose how new biodiversity technologies can resonate more effectively with local biodiversity restoration efforts.
</summary>
<dc:date>2025-06-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Asilomar Goes Underground: The Long Legacy of Recombinant DNA Hazard Debates for the Greater Boston Area Biotechnology Industry</title>
<link href="https://hdl.handle.net/1721.1/163753" rel="alternate"/>
<author>
<name>Scheffler, Robin W.</name>
</author>
<id>https://hdl.handle.net/1721.1/163753</id>
<updated>2025-11-19T04:59:55Z</updated>
<published>2025-03-07T00:00:00Z</published>
<summary type="text">Asilomar Goes Underground: The Long Legacy of Recombinant DNA Hazard Debates for the Greater Boston Area Biotechnology Industry
Scheffler, Robin W.
In 1975, a meeting on the potential hazards of recently invented recombinant DNA techniques was held at the Asilomar Conference Center in California. This meeting gave rise to a global debate over the safety and regulation of recombinant DNA (rDNA). In this paper, I use the historical development of recombinant DNA regulation in the Greater Boston Area—now home to the densest cluster of the biotechnology industry in the world—to provide a different interpretation of the legacies of Asilomar. While most accounts of Asilomar have considered its brief and dramatic impact on molecular biology on a national scale, an equally meaningful and overlooked impact is to be found in the development of regulations around recombinant DNA at the local level. Rather than hindering research, these events enabled the operations of the modern commercial biotechnology industry, which was founded on the promise of recombinant DNA. This approach highlights a different legacy of Asilomar, one which did not end with expert consensus that recombinant DNA was safe. Instead, attending to the material, infrastructural aspects of working with recombinant DNA in commercial settings reveals a wide range of communities involved in determining the social impacts of Asilomar—communities asking a broader set of questions about recombinant DNA than those originally posed in 1975.
</summary>
<dc:date>2025-03-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>A unified semantics for distributive and non-distributive universal quantifiers across languages</title>
<link href="https://hdl.handle.net/1721.1/163752" rel="alternate"/>
<author>
<name>Haslinger, Nina</name>
</author>
<author>
<name>Hien, Alain N.</name>
</author>
<author>
<name>Rosina, Emil E.</name>
</author>
<author>
<name>Schmitt, Viola</name>
</author>
<author>
<name>Wurm, Valerie</name>
</author>
<id>https://hdl.handle.net/1721.1/163752</id>
<updated>2025-11-19T04:59:50Z</updated>
<published>2025-07-09T00:00:00Z</published>
<summary type="text">A unified semantics for distributive and non-distributive universal quantifiers across languages
Haslinger, Nina; Hien, Alain N.; Rosina, Emil E.; Schmitt, Viola; Wurm, Valerie
Universal quantifiers differ in whether they are restricted to distributive interpretations, like English every, or permit non-distributive interpretations, like English all. This interpretational difference is traditionally captured by positing two unrelated lexical entries for distributive and non-distributive quantification. But this lexical approach does not explain why distributivity correlates with number: cross-linguistically, distributive universal quantifiers typically take singular complements, while non-distributive quantifiers consistently take plural complements. We derive this correlation by proposing a single lexical meaning for the universal quantifier, which derives a non-distributive interpretation if the restrictor predicate is closed under sum, but a distributive interpretation if it is quantized. Support comes from languages in which the same lexical item expresses distributive or non-distributive quantification depending on the number of the complement. For languages like English that have different expressions for non-distributive and distributive quantification, we propose that the distributive forms contain an additional morphosyntactic element that is semantically restricted to combine with a predicate of atomic individuals. This is motivated by the fact that in several languages, the distributive form is structurally more complex than the non-distributive form and sometimes even contains it transparently. We further show that in such languages, there are empirical advantages to taking the choice between distributive and non-distributive quantifier forms to be driven by semantic properties of the restrictor predicate, rather than morphosyntactic number.
</summary>
<dc:date>2025-07-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Passivization and composite A/Ā-movement in the Mandarin BEI-construction</title>
<link href="https://hdl.handle.net/1721.1/163751" rel="alternate"/>
<author>
<name>Chen, Fulang</name>
</author>
<id>https://hdl.handle.net/1721.1/163751</id>
<updated>2025-11-19T04:59:52Z</updated>
<published>2025-06-11T00:00:00Z</published>
<summary type="text">Passivization and composite A/Ā-movement in the Mandarin BEI-construction
Chen, Fulang
The bei-construction in Mandarin is a well-studied construction known for exhibiting both passive-like properties and tough-movement-like properties (see e.g., Feng 1995, 2012; Ting 1995a, 1998; Huang 1999; Tang 2001; Huang et al. 2009; Bruening and Tran 2015; a.o.). In this paper, I argue for a novel analysis of the bei-construction in Mandarin as a passive construction where the passive head/bei hosts a composite probe [ϕ+Ā], which triggers composite A/Ā-movement, in the sense of Van Urk (2015). The subject in the bei-construction is derived via (successive-cyclic) composite A/Ā-movement, followed by a terminating step of A-movement, similar to Longenbaugh’s (2017) analysis of English tough-movement. Under the proposed analysis, the mixed A/Ā-properties associated with the bei-construction are direct consequences of composite A/Ā-movement (following Van Urk 2015; Longenbaugh 2017). The proposed analysis of the bei-construction accounts for two restrictions on long-distance dependencies in the bei-construction – a requirement that no overt, case-less NPs should intervene between the subject of bei and the gap in agent-less bei-constructions, and a subject/object contrast with respect to the possibility of crossing a finite clause boundary to become the subject of bei.
</summary>
<dc:date>2025-06-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>From concept to manufacturing: evaluating vision-language models for engineering design</title>
<link href="https://hdl.handle.net/1721.1/163750" rel="alternate"/>
<author>
<name>Picard, Cyril</name>
</author>
<author>
<name>Edwards, Kristen M.</name>
</author>
<author>
<name>Doris, Anna C.</name>
</author>
<author>
<name>Man, Brandon</name>
</author>
<author>
<name>Giannone, Giorgio</name>
</author>
<author>
<name>Alam, Md F.</name>
</author>
<author>
<name>Ahmed, Faez</name>
</author>
<id>https://hdl.handle.net/1721.1/163750</id>
<updated>2025-11-19T05:00:00Z</updated>
<published>2025-07-01T00:00:00Z</published>
<summary type="text">From concept to manufacturing: evaluating vision-language models for engineering design
Picard, Cyril; Edwards, Kristen M.; Doris, Anna C.; Man, Brandon; Giannone, Giorgio; Alam, Md F.; Ahmed, Faez
Engineering design is undergoing a transformative shift with the advent of AI, marking a new era in how we approach product, system, and service planning. Large language models have demonstrated impressive capabilities in enabling this shift. Yet, with text as their only input modality, they cannot leverage the large body of visual artifacts that engineers have used for centuries and are accustomed to. This gap is addressed with the release of multimodal vision-language models (VLMs), such as GPT-4V, enabling AI to impact many more types of tasks. Our work presents a comprehensive evaluation of VLMs across a spectrum of engineering design tasks, categorized into four main areas: Conceptual Design, System-Level and Detailed Design, Manufacturing and Inspection, and Engineering Education Tasks. Specifically in this paper, we assess the capabilities of two VLMs, GPT-4V and LLaVA 1.6 34B, in design tasks such as sketch similarity analysis, CAD generation, topology optimization, manufacturability assessment, and engineering textbook problems. Through this structured evaluation, we not only explore VLMs’ proficiency in handling complex design challenges but also identify their limitations in complex engineering design applications. Our research establishes a foundation for future assessments of vision language models. It also contributes a set of benchmark testing datasets, with more than 1000 queries, for ongoing advancements and applications in this field.
</summary>
<dc:date>2025-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Review of AI-assisted design of low-carbon cost-effective concrete toward carbon neutrality</title>
<link href="https://hdl.handle.net/1721.1/163749" rel="alternate"/>
<author>
<name>Mahjoubi, Soroush</name>
</author>
<author>
<name>Barhemat, Rojyar</name>
</author>
<author>
<name>Meng, Weina</name>
</author>
<author>
<name>Bao, Yi</name>
</author>
<id>https://hdl.handle.net/1721.1/163749</id>
<updated>2025-11-19T05:00:04Z</updated>
<published>2025-05-03T00:00:00Z</published>
<summary type="text">Review of AI-assisted design of low-carbon cost-effective concrete toward carbon neutrality
Mahjoubi, Soroush; Barhemat, Rojyar; Meng, Weina; Bao, Yi
Decarbonizing concrete production is a critical step toward achieving carbon neutrality by 2050. This paper highlights the advancements in artificial intelligence-assisted design of low-carbon cost-effective concrete, focusing on integrating machine learning-based property prediction with multi-objective optimization. Data collection and processing techniques, such as automatic data extraction, artificial data generation, and anomaly detection, are first discussed to address the importance of dataset quality. Strategies that capture physicochemical information of ingredients, including by-product supplementary cementitious materials and recycled aggregates, are then examined to enhance model generalizability. Various machine learning models—from individual regression approaches to heterogeneous ensemble methods—are compared for their predictive accuracy and robustness. Methods for hyperparameter tuning, model evaluation, and interpretation to ensure reliable and interpretable predictions are reviewed. Design optimization approaches are then highlighted, ranging from grid/random searches to more sophisticated gradient-based and metaheuristic algorithms, aimed at minimizing carbon footprint, embodied energy, and cost. Future research avenues encompass (1) application-specific design frameworks that integrate critical objectives—mechanical performance, durability, fresh-state behavior, and time-dependent properties such as creep and shrinkage—tailored to specific structural and environmental requirements; (2) holistic design optimization that simultaneously refines mixture design and structural parameters; and (3) probabilistic approaches to systematically manage uncertainties in materials, structural performance, and loading conditions systematically.
</summary>
<dc:date>2025-05-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Making the eyes of the state: algorithmic alienation and mundane creativity in Peruvian street-level bureaucrats</title>
<link href="https://hdl.handle.net/1721.1/163748" rel="alternate"/>
<author>
<name>Cerna-Aragon, Diego</name>
</author>
<author>
<name>García, Luis</name>
</author>
<id>https://hdl.handle.net/1721.1/163748</id>
<updated>2025-11-19T05:00:06Z</updated>
<published>2025-02-15T00:00:00Z</published>
<summary type="text">Making the eyes of the state: algorithmic alienation and mundane creativity in Peruvian street-level bureaucrats
Cerna-Aragon, Diego; García, Luis
The production of state legibility has been a prolific subject of study. However, most works have not paid much attention to the quotidian labor of the street-level bureaucrats that implement legibility projects at a local level. The aim of this article is to explore the implementation of a social registry system at a local level to understand how frontline workers make the population legible. Instead of taking legibility as an object of evaluation or critique, we pay close attention to the inner workings of bureaucracies at the instances in which the sociomaterial conditions of the population are translated into data. Drawing from qualitative research in Peruvian municipalities, we describe the operations of an algorithmic system that classifies the population for the distribution of welfare. We observed how under-resourced bureaucrats were constrained by regulations and technologies of the system. Paradoxically, to make the system work for their local realities, the bureaucrats had to bend the rules and find workarounds. From this perspective, the making of legibility looks less like a top-down exercise of bureaucratic compliance or a story of domination over the population. Instead, we find actors attempting to maintain a delicate balance between inadequate legal rules, scarce resources, and sociopolitical demands.
</summary>
<dc:date>2025-02-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Waveform modelling for the Laser Interferometer Space Antenna</title>
<link href="https://hdl.handle.net/1721.1/163747" rel="alternate"/>
<author>
<name>Afshordi, Niayesh</name>
</author>
<author>
<name>Akçay, Sarp</name>
</author>
<author>
<name>Seoane, Pau A.</name>
</author>
<author>
<name>Antonelli, Andrea</name>
</author>
<author>
<name>Aurrekoetxea, Josu C.</name>
</author>
<author>
<name>Barack, Leor</name>
</author>
<author>
<name>Barausse, Enrico</name>
</author>
<author>
<name>Benkel, Robert</name>
</author>
<author>
<name>Bernard, Laura</name>
</author>
<author>
<name>Bernuzzi, Sebastiano</name>
</author>
<author>
<name>Berti, Emanuele</name>
</author>
<author>
<name>Bonetti, Matteo</name>
</author>
<author>
<name>Bonga, Béatrice</name>
</author>
<id>https://hdl.handle.net/1721.1/163747</id>
<updated>2025-11-19T05:00:32Z</updated>
<published>2025-10-30T00:00:00Z</published>
<summary type="text">Waveform modelling for the Laser Interferometer Space Antenna
Afshordi, Niayesh; Akçay, Sarp; Seoane, Pau A.; Antonelli, Andrea; Aurrekoetxea, Josu C.; Barack, Leor; Barausse, Enrico; Benkel, Robert; Bernard, Laura; Bernuzzi, Sebastiano; Berti, Emanuele; Bonetti, Matteo; Bonga, Béatrice
LISA, the Laser Interferometer Space Antenna, will usher in a new era in gravitational-wave astronomy. As the first anticipated space-based gravitational-wave detector, it will expand our view to the millihertz gravitational-wave sky, where a spectacular variety of interesting new sources abound: from millions of ultra-compact binaries in our Galaxy, to mergers of massive black holes at cosmological distances; from the early inspirals of stellar-mass black holes that will ultimately venture into the ground-based detectors’ view to the death spiral of compact objects into massive black holes, and many sources in between. Central to realising LISA’s discovery potential are waveform models, the theoretical and phenomenological predictions of the pattern of gravitational waves that these sources emit. This White Paper is presented on behalf of the Waveform Working Group for the LISA Consortium. It provides a review of the current state of waveform models for LISA sources, and describes the significant challenges that must yet be overcome.
</summary>
<dc:date>2025-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Systematic discovery of subcellular RNA patterns in the gut epithelium</title>
<link href="https://hdl.handle.net/1721.1/163746" rel="alternate"/>
<author>
<name>Lee, Minkyoung</name>
</author>
<author>
<name>Acar, Ilhan E.</name>
</author>
<author>
<name>Eletto, Davide</name>
</author>
<author>
<name>Adivarahan, Srivathsan</name>
</author>
<author>
<name>Mhamedi, Farah</name>
</author>
<author>
<name>Handler, Kristina</name>
</author>
<author>
<name>Lee, Jihyun</name>
</author>
<author>
<name>Vinzoni, Elena G.</name>
</author>
<author>
<name>Aguilar, Gustavo</name>
</author>
<id>https://hdl.handle.net/1721.1/163746</id>
<updated>2025-11-19T05:00:26Z</updated>
<published>2025-10-29T00:00:00Z</published>
<summary type="text">Systematic discovery of subcellular RNA patterns in the gut epithelium
Lee, Minkyoung; Acar, Ilhan E.; Eletto, Davide; Adivarahan, Srivathsan; Mhamedi, Farah; Handler, Kristina; Lee, Jihyun; Vinzoni, Elena G.; Aguilar, Gustavo
Background Subcellular RNA localization is crucial for the spatio-temporal control of protein synthesis and underlies key processes during development, homeostasis, and disease. In epithelial cells, RNA can localize asymmetrically along the apico-basal axis. Yet, the localization of most transcripts as well as the diversity of patterns that they adopt remains unexplored. Results Here, we use APEX-seq for proximity labeling and MERFISH for spatial transcriptomics to map subcellular transcript localization in intestinal organoids and tissue from adult mice. Many transcripts present localization bias, often localizing in granular structures. We uncover intrinsic and environmental factors that influence the formation of these patterns. Additionally, we identify translation-dependent and -independent localization patterns and pinpoint the role of 3′ untranslated regions and RNA-binding proteins. Conclusions This subcellular RNA atlas presents a detailed resource for understanding intestinal physiology.
</summary>
<dc:date>2025-10-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Identifying delayed human response to external risks: an econometric analysis of mobility change during a pandemic</title>
<link href="https://hdl.handle.net/1721.1/163745" rel="alternate"/>
<author>
<name>Zhang, Gaofei</name>
</author>
<author>
<name>Osi, Ann</name>
</author>
<author>
<name>Ghaffarzadegan, Navid</name>
</author>
<author>
<name>Rahmandad, Hazhir</name>
</author>
<author>
<name>Xu, Ran</name>
</author>
<id>https://hdl.handle.net/1721.1/163745</id>
<updated>2025-11-19T05:00:24Z</updated>
<published>2025-10-29T00:00:00Z</published>
<summary type="text">Identifying delayed human response to external risks: an econometric analysis of mobility change during a pandemic
Zhang, Gaofei; Osi, Ann; Ghaffarzadegan, Navid; Rahmandad, Hazhir; Xu, Ran
Background Human behavioral responses to changes in risks are often delayed. Methods for estimating these delayed responses either rely on rigid assumptions about the delay distribution (e.g., Erlang distribution), producing a poor fit, or yield period-specific estimates (e.g., estimates from the Autoregressive Distributed Lag (ARDL) model) that are difficult to integrate into simulation models. We propose a hybrid ARDL–Erlang approach that yields an interpretable summary of behavioral responses suitable for incorporation into simulation models. Method We apply the ARDL–Erlang approach to estimate the effect of COVID-19 deaths on mobility across US counties from October 2020 to July 2021. A standard panel autoregressive distributed lag (ARDL) model first estimates the effect of past deaths and past mobility on current mobility. The ARDL model is then transformed into an Infinite Distributed Lag (IDL) model consisting of only past deaths. The coefficients of the past deaths are aggregated into an overall effect and fit to an Erlang distribution, summarized by average delay length and shape parameter. Results Our results show that on the national level, a one-standard-deviation permanent increase in weekly deaths per 100,000 population (log-transformed) is associated with a 0.46-standard-deviation decrease in human mobility in the long run, where the delay distribution follows a first-order Erlang distribution, and the average delay length is about 3.2 weeks. However, there is much heterogeneity across states, with first- to third-order Erlang delays and 2 to 18 weeks of average delay providing a theoretically cogent summary of how mobility followed changes in deaths during the first year and a half of the pandemic. Conclusion This study provides a novel approach to estimating delayed human responses to health risks using a hybrid ARDL-Erlang model. Our findings highlight significant variability in the impact and timing of responses across states, underscoring the need for tailored public health policies. This study can also serve as guidelines and an example for identifying delayed human behavior in other settings.
</summary>
<dc:date>2025-10-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Integrating single-cell RNA-seq datasets with substantial batch effects</title>
<link href="https://hdl.handle.net/1721.1/163744" rel="alternate"/>
<author>
<name>Hrovatin, Karin</name>
</author>
<author>
<name>Moinfar, Amir Ali</name>
</author>
<author>
<name>Zappia, Luke</name>
</author>
<author>
<name>Parikh, Shrey</name>
</author>
<author>
<name>Lapuerta, Alejandro T.</name>
</author>
<author>
<name>Lengerich, Ben</name>
</author>
<author>
<name>Kellis, Manolis</name>
</author>
<author>
<name>Theis, Fabian J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163744</id>
<updated>2025-11-19T05:00:21Z</updated>
<published>2025-10-30T00:00:00Z</published>
<summary type="text">Integrating single-cell RNA-seq datasets with substantial batch effects
Hrovatin, Karin; Moinfar, Amir Ali; Zappia, Luke; Parikh, Shrey; Lapuerta, Alejandro T.; Lengerich, Ben; Kellis, Manolis; Theis, Fabian J.
Integration of single-cell RNA-sequencing (scRNA-seq) datasets is standard in scRNA-seq analysis. Nevertheless, current computational methods struggle to harmonize datasets across systems such as species, organoids and primary tissue, or different scRNA-seq protocols, including single-cell and single-nuclei. Conditional variational autoencoders (cVAE) are a popular integration method, however, existing strategies for stronger batch correction have limitations. Increasing the Kullback–Leibler divergence regularization does not improve integration and adversarial learning removes biological signals. Here, we propose sysVI, a cVAE-based method employing VampPrior and cycle-consistency constraints. We show that sysVI integrates across systems and improves biological signals for downstream interpretation of cell states and conditions.
</summary>
<dc:date>2025-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>21G.104 Chinese IV (Regular), Spring 2006</title>
<link href="https://hdl.handle.net/1721.1/124758.2" rel="alternate"/>
<author>
<name>Wheatley, Julian K.</name>
</author>
<id>https://hdl.handle.net/1721.1/124758.2</id>
<updated>2025-11-17T23:30:23Z</updated>
<published>2006-06-01T00:00:00Z</published>
<summary type="text">21G.104 Chinese IV (Regular), Spring 2006
Wheatley, Julian K.
This is the last of the four courses (Chinese I through IV) that make up the foundation level (four semesters over two years in the normal curriculum) of MIT's regular (non-streamlined) Chinese program. Chinese IV is designed to consolidate conversational usage and grammatical and cultural knowledge encountered in the earlier courses, and to expand reading and listening abilities. It integrates the last part of Learning Chinese (two units designed primarily for review of grammatical concepts and vocabulary growth) with material from Madeline Spring's Making Connections, designed to bolster listening skills, and Linda Hsai and Roger Yue's Strange Stories from a Chinese Studio, a collection of traditional stories that has been a favorite of students of Chinese for many decades and is used here to focus on reading. Reading for this course is primarily, but not exclusively, in the simplified character set that is the standard on the Mainland; readings in the traditional set that is standard in Taiwan are also assigned. Students who have advanced through Chinese I, II, and III to reach this level, as well as those entering at Chinese IV, should review at least the late material in Chinese III before proceeding. Chinese Sequence on OCW MIT OpenCourseWare now offers a complete sequence of four Chinese language courses, covering beginning to intermediate levels of instruction at MIT. They can be used not just as the basis for taught courses, but also for self-instruction and elementary-to-intermediate review. The four Chinese subjects provide the following materials: an online textbook in four parts, J. K. Wheatley's Learning Chinese: A Foundation Course in Mandarin; audio files of the main conversational and narrative material in this book; and syllabi and day-by-day schedules for each term. Course sequence on OCW. CHINESE COURSES COURSE SITES Chinese I (Fall 2014) 21G.101/151 Chinese II (Spring 2014) 21G.102/152 Chinese III (Fall 2005) 21G.103 Chinese IV (Spring 2006) 21G.104
</summary>
<dc:date>2006-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>High-throughput experimentation for discovery of biodegradable polyesters</title>
<link href="https://hdl.handle.net/1721.1/163743" rel="alternate"/>
<author>
<name>Fransen, Katharina A</name>
</author>
<author>
<name>Av-Ron, Sarah HM</name>
</author>
<author>
<name>Buchanan, Tess R</name>
</author>
<author>
<name>Walsh, Dylan J</name>
</author>
<author>
<name>Rota, Dechen T</name>
</author>
<author>
<name>Van Note, Lana</name>
</author>
<author>
<name>Olsen, Bradley D</name>
</author>
<id>https://hdl.handle.net/1721.1/163743</id>
<updated>2025-11-18T06:33:54Z</updated>
<published>2023-05-30T00:00:00Z</published>
<summary type="text">High-throughput experimentation for discovery of biodegradable polyesters
Fransen, Katharina A; Av-Ron, Sarah HM; Buchanan, Tess R; Walsh, Dylan J; Rota, Dechen T; Van Note, Lana; Olsen, Bradley D
The consistent rise of plastic pollution has stimulated interest in the development of biodegradable plastics. However, the study of polymer biodegradation has historically been limited to a small number of polymers due to costly and slow standard methods for measuring degradation, slowing new material innovation. High-throughput polymer synthesis and a high-throughput polymer biodegradation method are developed and applied to generate a biodegradation dataset for 642 chemically distinct polyesters and polycarbonates. The biodegradation assay was based on the clear-zone technique, using automation to optically observe the degradation of suspended polymer particles under the action of a single&#13;
            &lt;jats:italic&gt;Pseudomonas lemoignei&lt;/jats:italic&gt;&#13;
            bacterial colony. Biodegradability was found to depend strongly on aliphatic repeat unit length, with chains less than 15 carbons and short side chains improving biodegradability. Aromatic backbone groups were generally detrimental to biodegradability; however, ortho- and para-substituted benzene rings in the backbone were more likely to be degradable than metasubstituted rings. Additionally, backbone ether groups improved biodegradability. While other heteroatoms did not show a clear improvement in biodegradability, they did demonstrate increases in biodegradation rates. Machine learning (ML) models were leveraged to predict biodegradability on this large dataset with accuracies over 82% using only chemical structure descriptors.
</summary>
<dc:date>2023-05-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Antigen-adjuvant interactions, stability, and immunogenicity profiles of a SARS-CoV-2 receptor-binding domain (RBD) antigen formulated with aluminum salt and CpG adjuvants</title>
<link href="https://hdl.handle.net/1721.1/163742" rel="alternate"/>
<author>
<name>Bajoria, Sakshi</name>
</author>
<author>
<name>Kaur, Kawaljit</name>
</author>
<author>
<name>Kumru, Ozan S</name>
</author>
<author>
<name>Van Slyke, Greta</name>
</author>
<author>
<name>Doering, Jennifer</name>
</author>
<author>
<name>Novak, Hayley</name>
</author>
<author>
<name>Rodriguez Aponte, Sergio A</name>
</author>
<author>
<name>Dalvie, Neil C</name>
</author>
<author>
<name>Naranjo, Christopher A</name>
</author>
<author>
<name>Johnston, Ryan S</name>
</author>
<author>
<name>Silverman, Judith Maxwell</name>
</author>
<author>
<name>Kleanthous, Harry</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<author>
<name>Mantis, Nicholas J</name>
</author>
<author>
<name>Joshi, Sangeeta B</name>
</author>
<author>
<name>Volkin, David B</name>
</author>
<id>https://hdl.handle.net/1721.1/163742</id>
<updated>2025-11-18T06:33:20Z</updated>
<published>2022-06-06T00:00:00Z</published>
<summary type="text">Antigen-adjuvant interactions, stability, and immunogenicity profiles of a SARS-CoV-2 receptor-binding domain (RBD) antigen formulated with aluminum salt and CpG adjuvants
Bajoria, Sakshi; Kaur, Kawaljit; Kumru, Ozan S; Van Slyke, Greta; Doering, Jennifer; Novak, Hayley; Rodriguez Aponte, Sergio A; Dalvie, Neil C; Naranjo, Christopher A; Johnston, Ryan S; Silverman, Judith Maxwell; Kleanthous, Harry; Love, J Christopher; Mantis, Nicholas J; Joshi, Sangeeta B; Volkin, David B
Low-cost, refrigerator-stable COVID-19 vaccines will facilitate global access and improve vaccine coverage&#13;
in low- and middle-income countries. To this end, subunit-based approaches targeting the receptorbinding domain (RBD) of SARS-CoV-2 Spike protein remain attractive. Antibodies against RBD neutralize&#13;
SARS-CoV-2 by blocking viral attachment to the host cell receptor, ACE2. Here, a yeast-produced recombinant RBD antigen (RBD-L452K-F490W or RBD-J) was formulated with various combinations of aluminum-salt (Alhydrogel®, AH; AdjuPhos®, AP) and CpG 1018 adjuvants. We assessed the effect of antigenadjuvant interactions on the stability and mouse immunogenicity of various RBD-J preparations. While&#13;
RBD-J was 50% adsorbed to AH and &lt;15% to AP, addition of CpG resulted in complete AH binding, yet no&#13;
improvement in AP adsorption. ACE2 competition ELISA analyses of formulated RBD-J stored at varying&#13;
temperatures (4, 25, 37°C) revealed that RBD-J was destabilized by AH, an effect exacerbated by CpG. DSC&#13;
studies demonstrated that aluminum-salt and CpG adjuvants decrease the conformational stability of&#13;
RBD-J and suggest a direct CpG-RBD-J interaction. Although AH+CpG-adjuvanted RBD-J was the least&#13;
stable in vitro, the formulation was most potent at eliciting SARS-CoV-2 pseudovirus neutralizing antibodies in mice. In contrast, RBD-J formulated with AP+CpG showed minimal antigen-adjuvant interactions, a better stability profile, but suboptimal immune responses. Interestingly, the loss of in vivo potency&#13;
associated with heat-stressed RBD-J formulated with AH+CpG after one dose was abrogated by a booster.&#13;
Our findings highlight the importance of elucidating the key interrelationships between antigen-adjuvant&#13;
interactions, storage stability, and in vivo performance to enable successful formulation development of&#13;
stable and efficacious subunit vaccines.
</summary>
<dc:date>2022-06-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>21G.103 Chinese III (Regular), Fall 2005</title>
<link href="https://hdl.handle.net/1721.1/120951.2" rel="alternate"/>
<author>
<name>Wheatley, Julian K.</name>
</author>
<id>https://hdl.handle.net/1721.1/120951.2</id>
<updated>2025-11-17T23:31:22Z</updated>
<published>2005-12-01T00:00:00Z</published>
<summary type="text">21G.103 Chinese III (Regular), Fall 2005
Wheatley, Julian K.
This is the third of the four courses (Chinese I through IV) in MIT's regular (non-streamlined) Chinese curriculum. The four make use of the textbook, Learning Chinese: A Foundation Course in Mandarin (unpublished, but available online), to which are added various supporting materials as needs arise. The foundation level covers core grammar, linguistic culture, basic conversation, the principles of the writing system, and elementary reading. Reading is primarily in the simplified character set that is the standard on the Mainland, but also in the traditional set that is still standard in Taiwan and many overseas communities. All four subjects in the foundation level are (Chinese I and II) or soon will be (Chinese IV) available on OCW. Students who have advanced through Chinese I and II to reach this level, as well as those entering at Chinese III, should review at least the late material in Chinese II before proceeding. To facilitate review, as well as to orient students who are new to these materials, highlights from all the units in Chinese I and II and a list of the characters formally introduced in Character lessons 1-6 are included in the readings section of this course. Chinese Sequence on OCW OpenCourseWare now offers a complete sequence of four Chinese language courses, covering beginning to intermediate levels of instruction at MIT. They can be used not just as the basis for taught courses, but also for self-instruction and elementary-to-intermediate review. The four Chinese subjects provide the following materials: an online textbook in four parts, J. K. Wheatley's Learning Chinese: A Foundation Course in Mandarin; audio files of the main conversational and narrative material in this book; and syllabi and day-by-day schedules for each term. Course sequence on OCW. CHINESE COURSES COURSE SITES Chinese I (Fall 2014) 21G.101/151 Chinese II (Spring 2015) 21G.102/152 Chinese III (Fall 2005) 21G.103 Chinese IV (Spring 2006) 21G.104
</summary>
<dc:date>2005-12-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Synthetic Collagen Hydrogels through Symmetric Self‐Assembly of Small Peptides</title>
<link href="https://hdl.handle.net/1721.1/163741" rel="alternate"/>
<author>
<name>Tanrikulu, I Caglar</name>
</author>
<author>
<name>Dang, Lianna</name>
</author>
<author>
<name>Nelavelli, Lekha</name>
</author>
<author>
<name>Ellison, Aubrey J</name>
</author>
<author>
<name>Olsen, Bradley D</name>
</author>
<author>
<name>Jin, Song</name>
</author>
<author>
<name>Raines, Ronald T</name>
</author>
<id>https://hdl.handle.net/1721.1/163741</id>
<updated>2025-11-18T06:33:52Z</updated>
<published>2023-11-23T00:00:00Z</published>
<summary type="text">Synthetic Collagen Hydrogels through Symmetric Self‐Assembly of Small Peptides
Tanrikulu, I Caglar; Dang, Lianna; Nelavelli, Lekha; Ellison, Aubrey J; Olsen, Bradley D; Jin, Song; Raines, Ronald T
Animal‐sourced hydrogels, such as collagen, are widely used as extracellular‐matrix (ECM) mimics in tissue engineering but are plagued with problems of reproducibility, immunogenicity, and contamination. Synthetic, chemically defined hydrogels can avoid such issues. Despite the abundance of collagen in the ECM, synthetic collagen hydrogels are extremely rare due to design challenges brought on by the triple‐helical structure of collagen. Sticky‐ended symmetric self‐assembly (SESSA) overcomes these challenges by maximizing interactions between the strands of the triple helix, allowing the assembly of collagen‐mimetic peptides (CMPs) into robust synthetic collagen nanofibers. This optimization, however, also minimizes interfiber contacts. In this work, symmetric association states for the SESSA of short CMPs to probe their increased propensity for interfiber association are modelled. It is found that 33‐residue CMPs not only self‐assemble through sticky ends, but also form hydrogels. These self‐assemblies behave with remarkable consistency across multiple scales and present a clear link between their triple‐helical architecture and the properties of their hydrogels. The results show that SESSA is an effective and robust design methodology that enables the rational design of synthetic collagen hydrogels.
</summary>
<dc:date>2023-11-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>The BostonWalks study: a longitudinal travel survey using smartphone tracking</title>
<link href="https://hdl.handle.net/1721.1/163740" rel="alternate"/>
<author>
<name>Meister, Adrian</name>
</author>
<author>
<name>Bashan, Nail F.</name>
</author>
<author>
<name>Basu, Rounaq</name>
</author>
<author>
<name>Shen, Xianglu</name>
</author>
<author>
<name>Wang, Ryan Q.</name>
</author>
<author>
<name>Sevtsuk, Andres</name>
</author>
<id>https://hdl.handle.net/1721.1/163740</id>
<updated>2025-11-18T06:32:56Z</updated>
<published>2025-06-28T00:00:00Z</published>
<summary type="text">The BostonWalks study: a longitudinal travel survey using smartphone tracking
Meister, Adrian; Bashan, Nail F.; Basu, Rounaq; Shen, Xianglu; Wang, Ryan Q.; Sevtsuk, Andres
This paper introduces the BostonWalks (BWS) study, detailing its methodology, the resulting dataset, and an initial analysis. The BWS study is a smartphone-based GNSS-tracking study in the Boston metropolitan area, designed to generate an up-to-date dataset on travel behavior, with a particular focus on non-auto travel behavior and its representativeness across all population segments. The dataset encompasses approximately 155,000 trips from 990 participants, making it one of the most extensive datasets of its kind in North America. It includes both raw trajectory data and comprehensive socio-demographic information about participants. The paper outlines the survey methodology, including the technical infrastructure, recruitment strategy, and data processing techniques. A comparison of the socio-demographic and travel behavior characteristics of BWS participants with those from the National Household Travel Survey is provided. Lastly, the paper highlights the richness of the data through correlation and cluster analysis.
</summary>
<dc:date>2025-06-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Diverging global incidence trends of early-onset cancers: comparisons with incidence trends of later-onset cancers and mortality trends of early-onset cancers</title>
<link href="https://hdl.handle.net/1721.1/163739" rel="alternate"/>
<author>
<name>Terashima, Miyu</name>
</author>
<author>
<name>Nakayama, Kota</name>
</author>
<author>
<name>Shirai, Sora</name>
</author>
<author>
<name>Ugai, Satoko</name>
</author>
<author>
<name>Lee, Hwa-Young</name>
</author>
<author>
<name>Matsui, Haruna</name>
</author>
<author>
<name>Mizuno, Hiroki</name>
</author>
<author>
<name>Tanaka, Shiori</name>
</author>
<author>
<name>Song, Minkyo</name>
</author>
<author>
<name>Sasamoto, Naoko</name>
</author>
<author>
<name>Kawachi, Ichiro</name>
</author>
<author>
<name>Giovannucci, Edward L.</name>
</author>
<author>
<name>Ugai, Tomotaka</name>
</author>
<id>https://hdl.handle.net/1721.1/163739</id>
<updated>2025-11-18T06:33:42Z</updated>
<published>2025-11-14T00:00:00Z</published>
<summary type="text">Diverging global incidence trends of early-onset cancers: comparisons with incidence trends of later-onset cancers and mortality trends of early-onset cancers
Terashima, Miyu; Nakayama, Kota; Shirai, Sora; Ugai, Satoko; Lee, Hwa-Young; Matsui, Haruna; Mizuno, Hiroki; Tanaka, Shiori; Song, Minkyo; Sasamoto, Naoko; Kawachi, Ichiro; Giovannucci, Edward L.; Ugai, Tomotaka
Background The global increase in the incidence of early-onset cancers (defined as cancers diagnosed at 20–49 years old) is a serious public health problem. We investigated 1) whether the incidence trend of early-onset cancers differs from that of later-onset cancers and 2) whether both the incidence and mortality of early-onset cancers have increased concurrently. Methods We utilized age-standardized incidence and mortality rates for early-onset and later-onset cancers diagnosed between 2000 and 2017 from the Cancer Incidence in Five Continents and World Health Organization (WHO) mortality databases. The national obesity prevalence among adults aged 20–49 years was obtained from the National Clinical Database. Using joinpoint regression models, we calculated average annual percentage changes (AAPCs) for cancer incidence and mortality by cancer types and countries. We additionally conducted human development index (HDI)-stratified analyses and assessed the correlation between the obesity prevalence in younger populations and early-onset cancer incidence by country. To investigate the more recent trend of early-onset cancer mortality, we extended our mortality analysis after 2017 for cancer types and countries with statistically significant positive AAPCs in both incidence and mortality of early-onset cancers between 2000 and 2017. Results Our analysis showed that 10 early-onset cancer types (thyroid cancer, breast cancer, melanoma, uterine cancer, colorectal cancer, kidney cancer, cervical cancer, pancreatic cancer, multiple myeloma, Hodgkin lymphoma) in females and 7 early-onset cancer types (thyroid cancer, kidney cancer, testis cancer, prostate cancer, colorectal cancer, melanoma, leukemia) in males had statistically significant positive AAPCs in at least 10 countries. Among these, the following early-onset cancer types had significantly higher AAPCs than later-onset cancer types in females: colorectal cancer (6 countries; AAPC range: 1.8–3.8%), cervical cancer (6 countries; AAPC range: 1.2–3.3%), pancreatic cancer (5 countries; AAPC range: 2.3–13.0%), and multiple myeloma (5 countries; AAPC range: 3.1–9.8%); in males: prostate cancer (12 countries; AAPC range: 3.9–18.4%), colorectal cancer (8 countries; AAPC range: 1.8–3.2%), and kidney cancer (6 countries; AAPC range: 2.0–6.0%). We observed statistically significant positive AAPCs in both the incidence and mortality of the following early-onset cancer types: uterine cancer (5 countries) and colorectal cancer (3 countries in females and 5 countries in males). The steeper increases in early-onset cancers compared with later-onset cancers were mainly observed in the very high-HDI country group, including early-onset colorectal cancer (AAPC = 2.4%, 95% CI 2.1–2.6 in females; AAPC = 2.0%, 95% CI 1.7–2.4 in males) to later-onset colorectal cancer (AAPC = −0.1%, 95% CI −0.2 to 0 in females; AAPC = −0.2%, 95% CI −0.3 to 0 in males). We observed strong positive correlations between the increasing obesity prevalence and the rising incidence of early-onset obesity-related cancers in several countries, including Australia (7 cancer types), United Kingdom (7 cancer types), Canada (7 cancer types), Republic of Korea (7 cancer types), and USA (6 cancer types) in females and United Kingdom (7 cancer types), Canada (6 cancer types), Australia (5 cancer types), Sweden (5 cancer types), and Republic of Korea (4 cancer types) in males. Although we did not observe an apparent spike after 2017 in many countries, we observed continued increases in the mortality of certain cancer types, such as uterine cancer (Japan, Republic of Korea, United Kingdom, USA, and Ecuador) in females and colorectal cancer (Argentina, Canada, United Kingdom, and USA) in males. Conclusions The increase in many early-onset cancer types was significantly higher than that of later-onset cancers, and the incidence and mortality of certain early-onset cancer types (such as colorectal cancer) increased simultaneously. Our study highlights global differences in cancer incidence and mortality trends of early-onset and later-onset cancers.
</summary>
<dc:date>2025-11-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Generalizable MRI normative modelling to detect age-inappropriate neurodegeneration</title>
<link href="https://hdl.handle.net/1721.1/163738" rel="alternate"/>
<author>
<name>Parker, Thomas D.</name>
</author>
<author>
<name>Bethlehem, Richard A. I.</name>
</author>
<author>
<name>Seidlitz, Jakob</name>
</author>
<author>
<name>White, Simon R.</name>
</author>
<author>
<name>David, Michael C. B.</name>
</author>
<author>
<name>Kolanko, Magdalena A.</name>
</author>
<author>
<name>Bernstock, Joshua D.</name>
</author>
<author>
<name>Dorfschmidt, Lena</name>
</author>
<author>
<name>Bourke, Niall</name>
</author>
<author>
<name>Gailly de Taurines, Anastasia</name>
</author>
<author>
<name>Hain, Jessica A.</name>
</author>
<author>
<name>Del Giovane, Martina</name>
</author>
<author>
<name>Graham, Neil S. N.</name>
</author>
<id>https://hdl.handle.net/1721.1/163738</id>
<updated>2025-11-18T06:33:37Z</updated>
<published>2025-11-12T00:00:00Z</published>
<summary type="text">Generalizable MRI normative modelling to detect age-inappropriate neurodegeneration
Parker, Thomas D.; Bethlehem, Richard A. I.; Seidlitz, Jakob; White, Simon R.; David, Michael C. B.; Kolanko, Magdalena A.; Bernstock, Joshua D.; Dorfschmidt, Lena; Bourke, Niall; Gailly de Taurines, Anastasia; Hain, Jessica A.; Del Giovane, Martina; Graham, Neil S. N.
Background Determining whether MRI brain scans demonstrate atrophy that is beyond “normal for age” is challenging. Automated measurements of structural metrics in individual brain regions have shown promise as biomarkers of neurodegeneration, yet widely available reference standards that aid interpretation at the individual level are lacking. Normative modelling, enabling standardized “brain charts”, represents a significant step in addressing this challenge by generating individualized age- and sex- adjusted centile scores derived from large, aggregated datasets for MRI-derived quantitative metrics. Methods Using normative data from 56,173 participants across the life course, we have developed regional cortical thickness and amygdala/hippocampal volume brain charts (adjusted for total intracranial volume) that can be applied at the individual level. At the group level, we investigate whether regional centile scores relate to cognitive performance (mini-mental state examination) and discriminate individuals with neuropathological evidence of Alzheimer’s disease (n = 351) from propensity-matched controls from the National Alzheimer's Coordinating Center (NACC) dataset. In addition, we explored the relationships between disease stage, cognition, regional tau deposition and regional centile scores in amyloid-β-PET-positive individuals with Alzheimer’s disease dementia (n = 39) and mild cognitive impairment (n = 71) from the Alzheimer’s Disease Neuroimaging Initiative-3 (ADNI-3). We then extended this approach to phenotypes of frontotemporal lobar degeneration using the Neuroimaging in Frontotemporal Dementia dataset (n = 113). Results We demonstrate BrainChart’s application to illustrative individual cases. At the group level, we show that in Alzheimer’s disease, regional centile scores from brain charting predicted cognitive performance, temporal lobe tau PET tracer uptake and discriminated disease groups from propensity matched cognitively normal controls in independent cohorts. Distinct patterns of age-inappropriate cortical atrophy were also evident in different clinical phenotypes of frontotemporal lobar degeneration from the Neuroimaging in Frontotemporal Dementia dataset. Conclusions Regional centile scores derived from an extensive normative dataset represent a generalizable method for objectively identifying atrophy in neurodegenerative diseases and can be applied to determine neurodegenerative atrophy at the individual level.
</summary>
<dc:date>2025-11-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Inclusive B-meson flavour-tagging algorithm at LHCb</title>
<link href="https://hdl.handle.net/1721.1/163737" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163737</id>
<updated>2025-11-18T06:33:39Z</updated>
<published>2025-11-10T00:00:00Z</published>
<summary type="text">Inclusive B-meson flavour-tagging algorithm at LHCb
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.
A new algorithm is developed to identify the flavour of neutral B mesons at production in pp collisions by utilising all tracks from the hadronisation process. The algorithm is calibrated separately for B0 and B s 0 mesons using B0 → J/ψK+π− and B s 0 → D s − π + decays from pp collision data collected by the LHCb experiment at a centre-of-mass energy of 13 TeV. This new algorithm improves the tagging power by 35% for B0 mesons and 20% for B s 0 mesons when compared to the combined performance of the existing LHCb flavour-tagging algorithms.
</summary>
<dc:date>2025-11-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analytical benchmark problems and methodological framework for the assessment and comparison of multifidelity optimization methods</title>
<link href="https://hdl.handle.net/1721.1/163736" rel="alternate"/>
<author>
<name>Mainini, Laura</name>
</author>
<author>
<name>Serani, Andrea</name>
</author>
<author>
<name>Pehlivan-Solak, Hayriye</name>
</author>
<author>
<name>Di Fiore, Francesco</name>
</author>
<author>
<name>Rumpfkeil, Markus P.</name>
</author>
<author>
<name>Minisci, Edmondo</name>
</author>
<author>
<name>Quagliarella, Domenico</name>
</author>
<author>
<name>Yildiz, Sihmehmet</name>
</author>
<author>
<name>Ficini, Simone</name>
</author>
<author>
<name>Pellegrini, Riccardo</name>
</author>
<author>
<name>Thelen, Andrew</name>
</author>
<author>
<name>Bryson, Dean</name>
</author>
<author>
<name>Nikbay, Melike</name>
</author>
<author>
<name>Diez, Matteo</name>
</author>
<author>
<name>Beran, Philip S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163736</id>
<updated>2025-11-18T06:33:34Z</updated>
<published>2025-11-10T00:00:00Z</published>
<summary type="text">Analytical benchmark problems and methodological framework for the assessment and comparison of multifidelity optimization methods
Mainini, Laura; Serani, Andrea; Pehlivan-Solak, Hayriye; Di Fiore, Francesco; Rumpfkeil, Markus P.; Minisci, Edmondo; Quagliarella, Domenico; Yildiz, Sihmehmet; Ficini, Simone; Pellegrini, Riccardo; Thelen, Andrew; Bryson, Dean; Nikbay, Melike; Diez, Matteo; Beran, Philip S.
As engineering systems increase in complexity and performance demands intensify, Multidisciplinary Design Optimization (MDO) methodologies are becoming essential for integrating models from multiple disciplines to optimize complex multi-physics systems. Within this context, major challenges remain in selecting appropriate disciplinary fidelity levels, and how to couple them effectively. Multifidelity methods offer a promising path forward by strategically combining information sources of varying fidelity - whether computational or experimental - to enable efficient and scalable design exploration and optimization. Despite the development of numerous multifidelity methods, their comparative performance remains difficult to assess due to the absence of standardized benchmark frameworks capable of evaluating performance across diverse optimization tasks. To address this gap, this paper introduces a comprehensive benchmarking framework that includes: (i) a suite of analytical benchmark optimization problems designed to stress-test and validate multifidelity methods; (ii) a set of assessment metrics for quantifying and comparing performance over measurable objectives; and (iii) the classification, evaluation, and comparison of several families of multifidelity optimization methods and frameworks using the proposed benchmarks to identify their respective strengths and weaknesses in real-world scenarios. The proposed benchmark problems are analytically defined functions carefully selected to capture mathematical challenges commonly encountered in real-world applications, including high dimensionality, multimodality, discontinuities, and noise. Their closed-form nature ensures computational efficiency, high reproducibility, and a clear separation of algorithmic behavior from numerical artifacts. The accompanying performance metrics support the systematic evaluation of multifidelity methods, measuring both optimization effectiveness and global approximation accuracy. By providing a rigorous, reproducible, and accessible benchmarking framework, this work aims to enable the broader community to understand, compare, and advance multifidelity optimization methods for complex problems in science and engineering.
</summary>
<dc:date>2025-11-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Embodiment, Relationships, and Sexuality: An Ethical Analysis of Extended Reality Technologies</title>
<link href="https://hdl.handle.net/1721.1/163735" rel="alternate"/>
<author>
<name>Ramirez, Erick J.</name>
</author>
<author>
<name>Clark, Laura</name>
</author>
<author>
<name>Campbell, Sydney</name>
</author>
<author>
<name>Dreiman, Julian</name>
</author>
<author>
<name>Clay, Dorian</name>
</author>
<author>
<name>Gupta, Raghav</name>
</author>
<author>
<name>Jennett, Shelby</name>
</author>
<id>https://hdl.handle.net/1721.1/163735</id>
<updated>2025-11-18T06:33:30Z</updated>
<published>2025-11-14T00:00:00Z</published>
<summary type="text">Embodiment, Relationships, and Sexuality: An Ethical Analysis of Extended Reality Technologies
Ramirez, Erick J.; Clark, Laura; Campbell, Sydney; Dreiman, Julian; Clay, Dorian; Gupta, Raghav; Jennett, Shelby
Abstract Communication technologies change the way we relate to each other and ourselves. In this essay we analyze the effects that extended reality (XR) technologies are likely to have on conceptions of the self, romantic relationships, and other associated concepts like sexual orientation. While these technologies are in their infancy, key psychological and philosophical concepts are already being explored. We begin by defining extended reality and the family of technologies that make it possible. We pay special attention to the way these immersive technologies ground the experiences of presence which can become virtually real. These experiences provide a useful framework for understanding the phenomena of XR embodiment. XR embodiment, the experience of one’s self as embodied in XR, opens up the possibility of blended physical and digital narrative selves which form the basis of new forms of relationships. In a future where XR is incorporated into the basic social and political structures of society, XR embodiment and virtually real experiences challenge normative concepts like sex and sexual orientation. Contemporary conceptions of the self, sex, consent, and love emerged in purely physical contexts to help us navigate the limitations of physical embodiment. XR embodiment requires a new ethical framework to make room for these possibilities. We end the paper by assessing ethical risks XR embodiment can introduce for XR developers, and researchers.
</summary>
<dc:date>2025-11-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>IsoDAR@Yemilab: Preliminary design report—volume II (beam transport, neutrino source, and shielding)</title>
<link href="https://hdl.handle.net/1721.1/163734" rel="alternate"/>
<author>
<name>Spitz, Joshua</name>
</author>
<author>
<name>Alonso, Jose R.</name>
</author>
<author>
<name>Ameel, Jon</name>
</author>
<author>
<name>Barlow, Roger</name>
</author>
<author>
<name>Bartoszek, Larry</name>
</author>
<author>
<name>Bungau, Adriana</name>
</author>
<author>
<name>Shaevitz, Michael H.</name>
</author>
<author>
<name>Voirin, Erik A.</name>
</author>
<author>
<name>Winklehner, Daniel</name>
</author>
<author>
<name>Conrad, Janet M.</name>
</author>
<author>
<name>Engebretson, Samuel J.</name>
</author>
<author>
<name>Moon, Jarrett</name>
</author>
<author>
<name>Winkler, Eleanor</name>
</author>
<author>
<name>Adelmann, Andreas</name>
</author>
<author>
<name>Axani, Spencer N.</name>
</author>
<author>
<name>Barletta, William A.</name>
</author>
<author>
<name>Calabretta, Luciano</name>
</author>
<author>
<name>Calvo, Pedro</name>
</author>
<author>
<name>Chan, Andrew</name>
</author>
<author>
<name>Karagiorgi, Georgia</name>
</author>
<id>https://hdl.handle.net/1721.1/163734</id>
<updated>2025-11-18T06:33:29Z</updated>
<published>2025-11-10T00:00:00Z</published>
<summary type="text">IsoDAR@Yemilab: Preliminary design report—volume II (beam transport, neutrino source, and shielding)
Spitz, Joshua; Alonso, Jose R.; Ameel, Jon; Barlow, Roger; Bartoszek, Larry; Bungau, Adriana; Shaevitz, Michael H.; Voirin, Erik A.; Winklehner, Daniel; Conrad, Janet M.; Engebretson, Samuel J.; Moon, Jarrett; Winkler, Eleanor; Adelmann, Andreas; Axani, Spencer N.; Barletta, William A.; Calabretta, Luciano; Calvo, Pedro; Chan, Andrew; Karagiorgi, Georgia
This Preliminary Design Report (PDR) describes the IsoDAR electron-antineutrino source in two volumes which are mostly site-independent and describe the cyclotron driver providing a 60 MeV, 10 mA proton beam (Volume I); and the Medium Energy Beam Transport (MEBT) line and target (this Volume). The IsoDAR driver and target will produce about 1.15 · 10 23 electron-antineutrinos over 5 calendar years. Paired with a kton-scale liquid scintillator detector, this will enable a broad particle physics program including searches for new symmetries, new interactions and new particles. Here in Volume II, we describe the Medium Energy Beam Transport line, the antineutrino source beam-target and surrounding sleeve, shielding, and plans for monitoring and installation.
</summary>
<dc:date>2025-11-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>On Nontrivial Winning and Losing Parameters of Schmidt Games</title>
<link href="https://hdl.handle.net/1721.1/163733" rel="alternate"/>
<author>
<name>Neckrasov, Vasiliy</name>
</author>
<author>
<name>Zhan, Eric</name>
</author>
<id>https://hdl.handle.net/1721.1/163733</id>
<updated>2025-11-18T06:33:45Z</updated>
<published>2025-11-14T00:00:00Z</published>
<summary type="text">On Nontrivial Winning and Losing Parameters of Schmidt Games
Neckrasov, Vasiliy; Zhan, Eric
In this paper we study the classical Schmidt game on two families of sets: one related to frequencies of digits in base-2 expansions, and one connected to the set of the badly approximable numbers. Namely, we describe some nontrivial winning and losing parameters ( α , β ) for these sets.
</summary>
<dc:date>2025-11-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>International bureaucrats under transparency: The case of the WTO TRIPS Council</title>
<link href="https://hdl.handle.net/1721.1/163732" rel="alternate"/>
<author>
<name>Park, Sojun</name>
</author>
<author>
<name>Kim, Minju</name>
</author>
<id>https://hdl.handle.net/1721.1/163732</id>
<updated>2025-11-18T06:33:35Z</updated>
<published>2025-11-11T00:00:00Z</published>
<summary type="text">International bureaucrats under transparency: The case of the WTO TRIPS Council
Park, Sojun; Kim, Minju
How does transparency affect the behavior of international bureaucrats tasked with facilitating negotiations? Existing theories offer opposing expectations—greater transparency might induce international bureaucrats to engage more with contentious issues that matter to the public or lead them to avoid those issues whenever possible. We assess these competing perspectives by analyzing the World Trade Organization (WTO)’s 2002 document de-restriction reform that enhanced transparency to the public. Specifically, we examine how prompt public disclosure of documents shapes the way the WTO Secretariat writes reports about the Agreement on Trade-Related Aspects of Intellectual Property Rights (TRIPS). Using network statistics to estimate the state preference distributions on key topics, we find that, after the reform, the WTO Secretariat is more likely to issue reports on polarized topics in negotiations, using accountability-enhancing words. Our analysis at the country-year level shows that the reform led to greater national newspaper coverage of the WTO TRIPS, which in turn raised public awareness. The results suggest that transparency could empower international bureaucrats to tackle divisive issues in times of member-state gridlock.
</summary>
<dc:date>2025-11-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>AbsInt-AI: Language Models for Abstract Interpretation</title>
<link href="https://hdl.handle.net/1721.1/163731" rel="alternate"/>
<author>
<name>Wang, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/163731</id>
<updated>2025-11-18T06:27:57Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">AbsInt-AI: Language Models for Abstract Interpretation
Wang, Michael
Static program analysis is a foundational technique in software engineering for reasoning about program behavior. Traditional static analysis algorithms model programs as logical systems with well-defined semantics, enabling strong guarantees such as never missing a bug. However, traditional analyses almost always rely on uniform, hard-coded heap abstractions. While more adaptive abstractions are possible in theory, they are rarely implemented in practice due to their complexity and fragility. This limits their precision and flexibility, especially in dynamic languages like JavaScript, where heap structures are heterogeneous and difficult to analyze statically. In this work, we introduce AbsInt-AI, a language-model-guided static analysis framework based on abstract interpretation with adaptive, per-object heap abstractions for JavaScript. This enables the analysis to leverage high-level cues, such as naming conventions and access patterns, without requiring brittle, hand-engineered heuristics. Importantly, the LM agent operates within a bounded interface and never directly manipulates program state, preserving the soundness guarantees of abstract interpretation. ABSINT-AI reduces false positives by up to 34% for bug detection compared to traditional static analysis while maintaining soundness. Our ablations show that the LM’s interactions with the analysis environment are crucial, outperforming non-agentic direct LM predictions by 25%.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimizing Video Streaming at Scale Across Devices, Networks, and Temporal Drift</title>
<link href="https://hdl.handle.net/1721.1/163730" rel="alternate"/>
<author>
<name>Sharma, Harsha</name>
</author>
<id>https://hdl.handle.net/1721.1/163730</id>
<updated>2025-11-18T06:27:48Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Optimizing Video Streaming at Scale Across Devices, Networks, and Temporal Drift
Sharma, Harsha
Video-streaming platforms tune dozens of playback parameters across thousands of client devices. Our measurements from Prime Video show that device-specific tuning can enhance stream quality. Yet traditional blackbox optimization methods like Bayesian optimization become prohibitively expensive due to the large configuration space and the constant emergence of new device types. We introduce AZEEM, a scalable recommendation system leveraging few-shot prediction to rapidly identify promising configurations for new devices. The key insight behind AZEEM is that devices exhibit performance similarities that enable predictions from limited observations. Trained on offline data of device-playback configuration interactions, AZEEM efficiently narrows down the search space to a small set of configurations likely to contain optimal or near-optimal candidates. Additionally, AZEEM addresses temporal distribution shift—where the best-performing configurations change over time—by recommending a small, robust set of candidates rather than a single configuration. Evaluations using largescale real-world datasets show that AZEEM reduces exploration cost by 5.8 − 13.6× and improves stream quality compared to state-of-the-art Bayesian optimization and multi-armed bandit approaches, enabling effective device-specific optimization at scale. The material in this thesis is primarily sourced from the paper "Predict, Prune, Play: Efficient Video Playback Optimization Under Device Diversity and Drift" authored by Harsha Sharma, Pouya Hamadanian, Arash Nasr-Esfahany, Zahaib Akhtar, Mohammad Alizadeh, which is currently under submission.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Oreo: Protecting ASLR Against Microarchitectural&#13;
Attacks</title>
<link href="https://hdl.handle.net/1721.1/163729" rel="alternate"/>
<author>
<name>Song, Shixin</name>
</author>
<id>https://hdl.handle.net/1721.1/163729</id>
<updated>2025-11-18T06:27:35Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Oreo: Protecting ASLR Against Microarchitectural&#13;
Attacks
Song, Shixin
Address Space Layout Randomization (ASLR) is one of the most prominently deployed mitigations against memory corruption attacks. ASLR randomly shuffles program virtual addresses to prevent attackers from knowing the location of program contents in memory. Microarchitectural side channels have been shown to defeat ASLR through various hardware mechanisms. We systematically analyze existing microarchitectural attacks and identify multiple leakage paths. Given the vast attack surface exposed by ASLR, it is challenging to effectively prevent leaking the ASLR secret against microarchitectural attacks. Motivated by this, we present Oreo, a software-hardware co-design mitigation that strengthens ASLR against these attacks. Oreo uses a new memory mapping interface to remove secret randomized bits in virtual addresses before translating them to their corresponding physical addresses. This extra step hides randomized virtual addresses from microarchitecture structures, preventing side channels from leaking ASLR secrets. Oreo is transparent to user programs and incurs low overhead. We prototyped and evaluated our design on Linux using the hardware simulator gem5.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>On Counting Substructures with Graph Neural Networks</title>
<link href="https://hdl.handle.net/1721.1/163728" rel="alternate"/>
<author>
<name>Tahmasebi, Behrooz</name>
</author>
<id>https://hdl.handle.net/1721.1/163728</id>
<updated>2025-11-18T06:27:54Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">On Counting Substructures with Graph Neural Networks
Tahmasebi, Behrooz
To achieve a graph representation, most Graph Neural Networks (GNNs) follow two steps: first, each graph is decomposed into a number of subgraphs (which we call the recursion step), and then the collection of subgraphs is encoded by several iterative pooling steps. While recently proposed higher-order networks show a remarkable increase in the expressive power through a single recursion on larger neighborhoods followed by iterative pooling, the power of deeper recursion in GNNs without any iterative pooling is still not fully understood. To make it concrete, we consider a pure recursion-based GNN which we call Recursive Neighborhood Pooling GNN (RNPGNN). The expressive power of an RNP-GNN and its computational cost quantifies the power of (pure) recursion for a graph representation network. We quantify the power by means of counting substructures, which is one main limitation of the Message Passing graph Neural Networks (MPNNs), and show how RNP-GNN can exploit the sparsity of the underlying graph to achieve low-cost powerful representations. We also compare the recent lower bounds on the time complexity and show how recursion-based networks are near optimal.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design and Control of a Multi-Fingered Soft-Rigid Hybrid&#13;
Robotic Hand</title>
<link href="https://hdl.handle.net/1721.1/163727" rel="alternate"/>
<author>
<name>Norton, Wil J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163727</id>
<updated>2025-11-18T06:27:44Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Design and Control of a Multi-Fingered Soft-Rigid Hybrid&#13;
Robotic Hand
Norton, Wil J.
In robot hands, compliance improves the quality of grasps and allows for robustness in contact with the environment, which is why soft robot hands, which are inherently compliant, generate such interest despite being complex to control and model. In prior work, our lab developed a soft-rigid hybrid architecture for a robot finger, with the intention of making a compliant finger that is as easy to control as a rigid robot. This thesis details the work done to take this architecture and develop it into a five-fingered dexterous gripper capable of highly compliant grasping — over several iterations, we create an integrated tendon-driven hand that is robust, maintainable, and inexpensive. We develop a precise controller for the soft-rigid hybrid finger, and extend it for both position and task space control of the hand — additionally we implement variable stiffness control within the controller without the need for additional hardware, via adjusting gain values in the control loop. We test the ability of the hand to complete the full set of human grasping postures, and demonstrate that the soft-rigid architecture enables a high degree of generalization, able to complete 28 of the 33 identified human grasp postures. Additionally, tests illustrate the hand’s advantages in completing traditionally difficult manipulation tasks such as picking up thin deformable objects (such as a dollar bill or folding cloth) as well as in interfacing with soft or delicate target objects. We adapt a teleoperation system to map the movements of the robot gripper to a glove worn by a human operator, and evaluate the usability of the hand as a teleoperation target for completing several tasks — we illustrate promising results that the compliance of the hand compensates for operator error and allows for fast completion of tasks requiring environmental or object contact, traditionally difficult tasks for existing rigid robots. Finally, we discuss the use of the teleoperation system to record demonstrations which we then use to train an imitation learning model, utilizing an implementation of denoising diffusion probabilistic models, to complete grasping tasks. We show that our soft-rigid fingers allow a dexterous hand to be trained to perform autonomous grasping with a relatively small set of expert demonstrations, and that the compliance of the physical structure allows for variance in the environment and object position to be compensated for by the physical properties of the hand.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of Multi-Modality Imaging Cart for&#13;
Barrett’s Esophagus</title>
<link href="https://hdl.handle.net/1721.1/163726" rel="alternate"/>
<author>
<name>Qu, Ashley</name>
</author>
<id>https://hdl.handle.net/1721.1/163726</id>
<updated>2025-11-18T06:27:28Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Development of Multi-Modality Imaging Cart for&#13;
Barrett’s Esophagus
Qu, Ashley
Barrett’s Esophagus (BE) is a key precursor to esophageal adenocarcinoma (EAC), but current screening and risk assessment methods are ineffective and costly. Many BE cases remain undiagnosed due to asymptomatic patients, and existing risk algorithms rely on patient data rather than biomarkers. This work aims to start building a risk progression model by using a multi-modal imaging system combining autofluorescence spectroscopy, optical coherence tomography, and diffuse reflectance spectroscopy to perform label-free optical biopsies on ex-vivo tissue. These images will be co-registered and validated with histological biomarkers for BE. The ultimate goal is to develop a non-invasive endoscopic capsule and algorithm to better assess BE progression and enhance early detection of EAC.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Complexity of Basis-Restricted Local Hamiltonians</title>
<link href="https://hdl.handle.net/1721.1/163725" rel="alternate"/>
<author>
<name>Ma, Henry</name>
</author>
<id>https://hdl.handle.net/1721.1/163725</id>
<updated>2025-11-18T06:27:51Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Complexity of Basis-Restricted Local Hamiltonians
Ma, Henry
A major goal of quantum complexity theory is to understand which computational problems can be solved with access to certain quantum resources. The subfield of Hamiltonian complexity specifically considers computational problems that ask about properties of local Hamiltonians, which are of critical importance in quantum complexity because they can be viewed as quantum generalizations of classical constraint satisfaction problems. In this work, we study the complexity of certain restricted variants of the Quantum-k-Sat problem, a quantum analog of the NP-complete k-Sat problem. We introduce new variants of Quantum-k-Sat which place a basis restriction on the input Hamiltonian H = Σᵢ hᵢ . Each variant is defined by a fixed collection of bases B₁, . . . , Bᵣ of n-qubit space. We require that each Hamiltonian term hi must be diagonal in one of these bases. Our results resolve the complexity of certaim basis-restricted variants of Quantum-k-Sat. First we show the Quantum-6-Sat problem with Hamiltonian terms restricted to be diagonal in an X/Z mixed basis is QMA₁-complete. Second, we combine basis restriction with the restriction of commutativity, and show the following easiness result, which applies generally to higher-level quantum systems (qudits) and bases Q and R (which are real-valued and satisfy an overlap condition): The commmuting Quantum-Sat problem on qudits, where Hamiltonian terms are either diagonal in the Q basis, the R basis, or a single mixed Q/R basis, is in NP.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Future of Personalized, Aligned Language Models</title>
<link href="https://hdl.handle.net/1721.1/163724" rel="alternate"/>
<author>
<name>Han, Seungwook</name>
</author>
<id>https://hdl.handle.net/1721.1/163724</id>
<updated>2025-11-18T06:27:43Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Future of Personalized, Aligned Language Models
Han, Seungwook
Aligning Large Language Models (LLMs) to cater to different human preferences, learning new skills, and unlearning harmful behavior is an important problem. Search-based methods, such as Best-of-N or Monte-Carlo Tree Search, are effective, but impractical for LLM adaptation due to their high inference cost. On the other hand, using Reinforcement Learning (RL) for adaptation is computationally efficient, but performs worse due to the optimization challenges in co-training the value function and the policy. We present a new framework for reward optimization, Value Augmented Sampling (VAS), that can maximize different reward functions using data sampled from only the initial, frozen LLM. VAS solves for the optimal reward-maximizing policy without co-training the policy and the value function, making the optimization stable, outperforming established baselines, such as PPO and DPO, on standard benchmarks, and achieving comparable results to Best-of-128 with lower inference cost. Unlike existing RL methods that require changing the weights of the LLM, VAS does not require access to the weights of the pre-trained LLM. Thus, it can even adapt LLMs (e.g., ChatGPT), which are available only as APIs. In addition, our algorithm unlocks the new capability of composing several rewards and controlling the extent of each one during deployment time. By bringing together stability, flexibility, and efficiency, we explore the future of aligned, personalized language models that can be adapted seamlessly to meet a wide spectrum of human preferences.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Post-Carbon Seoul: Low-Carbon Interventions for a High-Carbon Housing Stock</title>
<link href="https://hdl.handle.net/1721.1/163723" rel="alternate"/>
<author>
<name>Ji, Yewon</name>
</author>
<id>https://hdl.handle.net/1721.1/163723</id>
<updated>2025-11-18T06:27:33Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Post-Carbon Seoul: Low-Carbon Interventions for a High-Carbon Housing Stock
Ji, Yewon
Seoul, South Korea, exhibits an exceptionally rapid residential demolition-reconstruction cycle of approximately 30 - 40 years, resulting in one of the world’s shortest apartment building lifespans. This entrenched status quo, fueled by post-war policies, real estate speculation, and finance models treating housing primarily as a short-term asset, contrasts sharply with other developed nations. This research critiques South Korea’s model of rapid demolition for its significant, often overlooked, environmental impacts and social costs. To evaluate alternatives, the methodology comprises three key stages: A) a comparative analysis of the financial frameworks and sustainability outcomes characterizing Western residential longevity versus the unique Korean housing model; B) the formulation of a novel alternative practice focused on adaptive reuse and retrofitting, specifically tailored to integrate within South Korea’s economic system and cultural context; and C) the practical demonstration and assessment of this practice through a design case study, incorporating strategies like phased interventions and low-carbon materials such as mass timber. The analysis reveals that this alternative extends building lifespan and achieves substantial carbon reductions by preserving the embodied carbon within existing structures. It offers long-term financial benefits, presenting a viable economic pathway aligning key stakeholder interests through enduring value over speculative gains.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Scaling Automatic Question Generation to Large Documents: A Concept-Driven Approach</title>
<link href="https://hdl.handle.net/1721.1/163722" rel="alternate"/>
<author>
<name>Noorbakhsh, Kimia</name>
</author>
<id>https://hdl.handle.net/1721.1/163722</id>
<updated>2025-11-18T06:27:53Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Scaling Automatic Question Generation to Large Documents: A Concept-Driven Approach
Noorbakhsh, Kimia
Assessing and enhancing human learning through question-answering is vital, especially when dealing with large documents, yet automating this process remains challenging. While large language models (LLMs) excel at summarization and answering queries, their ability to generate meaningful questions from lengthy texts remains underexplored. We propose Savaal, a scalable question-generation system with three objectives: (i) scalability, enabling question-generation from hundreds of pages of text (ii) depth of understanding, producing questions beyond factual recall to test conceptual reasoning, and (iii) domainindependence, automatically generating questions across diverse knowledge areas. Instead of providing an LLM with large documents as context, Savaal improves results with a threestage processing pipeline. Our evaluation with 76 human experts on 71 papers and PhD dissertations shows that Savaal generates questions that better test depth of understanding by 6.5× for dissertations and 1.5× for papers compared to a direct-prompting LLM baseline. Notably, as document length increases, Savaal’s advantages in higher question quality and lower cost become more pronounced.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>New approaches to diagnostic imaging: Magnetic particle&#13;
imaging for human functional neuroimaging and short&#13;
mid-field MRI magnet design</title>
<link href="https://hdl.handle.net/1721.1/163721" rel="alternate"/>
<author>
<name>Barksdale, Alex Christopher</name>
</author>
<id>https://hdl.handle.net/1721.1/163721</id>
<updated>2025-11-18T03:03:33Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">New approaches to diagnostic imaging: Magnetic particle&#13;
imaging for human functional neuroimaging and short&#13;
mid-field MRI magnet design
Barksdale, Alex Christopher
Part I: Magnetic Particle Imaging for Human Functional Neuroimaging While Magnetic Resonance Imaging (MRI) has revolutionized diagnostic imaging since its clinical introduction in the 1980s — primarily focusing on hydrogen nuclei — it remains fundamentally limited by the weak nature of nuclear spin magnetism. For example, functional MRI (fMRI) provides valuable insights into brain activity through BOLD signaling, but its limited sensitivity and reliance on indirect physiological measures often necessitate large subject pools for meaningful analysis. In contrast, Magnetic Particle Imaging (MPI) utilizes the much stronger magnetism associated with superparamagnetic iron oxide nanoparticles (SPIONs), and by minimizing background signal levels which are not modulated by functional activity, it offers a promising alternative. However, there are no approved SPION tracers for human use that are well-suited to MPI, and we have little experience scaling this technology up to human-sized imagers. This thesis therefore demonstrates a human-scale MPI scanner using functional MPI (fMPI) in non-human primates and assesses its potential for future human studies. Additionally, we investigate safety aspects of MPI, specifically focusing on peripheral nerve stimulation (PNS) induced by the 25 kHz magnetic excitation fields used in MPI. Because this is a higher frequency than those used by MRI gradients, threshold data at this frequency are lacking. This thesis measures the PNS stimulation threshold in human subjects to better understand high-frequency magnetic PNS and ensure the safe implementation of human-scale MPI for future neuroimaging applications. Part II: Short Mid-Field MRI Magnet Designs Anxiety induced by the long, narrow tube of conventional 1.5T and 3T scanners is a common cause of incomplete patient examinations, leading to delays in diagnosis and reduced facility throughput. In contrast, the short aspect ratio of CT scanner bores is known to alleviate this anxiety, eliminating this problem. This thesis also addresses the need for a more patient-friendly MRI scanning option by introducing a new “hybrid” superconducting and permanent magnet concept applicable to mid-field (0.5T) superconducting solenoid magnets. While mid-field scanners offer lower sensitivity than high-field alternatives, recent advances in image reconstruction and denoising have significantly enhanced their utility, allowing them to deliver diagnostic information comparable to that of the previous generation of 1.5T scanners. Additionally, they increase the range of compatible metallic implants and offer hospitals a lower-cost, easier-to-site alternative to 1.5T and 3T scanners. They can also enhance patient comfort through shorter bore lengths and larger diameters, but their optimized winding designs still reach a limit in how short they can be made for a given homogeneity and diameter specification. This thesis introduces the use of rare-earth permanent magnets to enable further reductions in scanner length, aiming to match the aspect ratio of CT scanners.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Ab initio modeling of superconducting nanowire single-photon detectors</title>
<link href="https://hdl.handle.net/1721.1/163720" rel="alternate"/>
<author>
<name>Simon, Alejandro</name>
</author>
<id>https://hdl.handle.net/1721.1/163720</id>
<updated>2025-11-18T06:27:39Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Ab initio modeling of superconducting nanowire single-photon detectors
Simon, Alejandro
Single-photon detectors are widely used in modern communication, sensing, and computing technology. Among these detectors, superconducting nanowire single-photon detectors (SNSPDs) possess the highest detection efficiencies, the shortest timing jitter, and the lowest dark count rates. However, for several applications, including those in the biological, astronomical, and quantum computation fields, there remains a desire to push the capabilities of modern detectors even further. To realize these improvements, it is necessary to develop an understanding of the physical mechanisms underpinning single-photon detection in these devices. However, current models are phenomenological, requiring experimental data for input, or can only recover qualitative agreement, severely limiting their predictive ability. In this thesis, we begin by describing the existing theoretical frameworks used to model superconducting materials and devices, both in equilibrium and nonequilibrium. We then illustrate an example of a phenomenological approach to modeling superconducting devices by developing an electrothermal model for the superconducting nanowire cryotron and demonstrating its efficacy in predicting the DC behavior and power dissipation of the device. Finally, we expand upon the current state-of-the-art SNSPD theory by utilizing recent advances in density functional theory to develop an ab initio model for the photon detection mechanism of SNSPDs. We then validate the predictions of our model with experimental data from the literature. The resulting model requires no experimental input, provides quantitative predictions of SNSPD performance, and can be extended to describe other superconducting devices, thus enabling the possibility of conducting a systematic search of materials for enhanced device performance.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Inference-Time Learning Algorithms of Language Models</title>
<link href="https://hdl.handle.net/1721.1/163719" rel="alternate"/>
<author>
<name>Akyurek, Ekin</name>
</author>
<id>https://hdl.handle.net/1721.1/163719</id>
<updated>2025-11-18T03:03:28Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Inference-Time Learning Algorithms of Language Models
Akyurek, Ekin
Modern language models (LMs) can perform complex tasks through in-context learning (ICL)—they can adapt to a task via examples provided in their input without any parameter updates. However, fundamental questions remain about when this adaptation works, what algorithms underlie it, and how to improve it. This thesis studies the mechanisms and limitations of ICL and develops better methods for test time adaptation of LMs on diverse benchmarks of language modeling and reasoning. I begin by evaluating the ICL capabilities of pre-trained LMs. I demonstrate that LMs can achieve strong compositional generalization when provided with few-shot examples. In a separate analysis, I show that their performance deteriorates significantly when faced with counterfactual variants of tasks they normally performed well on. Later, I develop "model problems" of ICL test the ability of LMs to learn novel mathematical structures in-context like linear functions and probabilistic formal languages. I interpret the algorithmic foundations of ICL. First, I prove that Transformer models with sufficient capacity can execute both iterative and closed-form solutions to linear regression problems, and demonstrate that these theoretical solutions manifest as interpretable intermediate variables. Then, I reveal how LMs develop specialized circuits that implement approximate n-gram learning algorithms for probabilistic languages. Building on these insights, I develop two approaches to enhance LMs. First, I demonstrate that explicitly incorporating n-gram computation into model architectures improves performance across multiple domains. Second, I introduce a test-time training that enables rapid adaptation through gradient updates on input data, achieving significant improvements over standard few-shot learning on abstract reasoning tasks. Together, these results advance our understanding of how LMs adapt to novel tasks and provide practical techniques for enhancing their test-time learning capabilities.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Trapping and Laser Cooling an Ensemble of Ytterbium-171 Atoms for use in an Atomic Clock</title>
<link href="https://hdl.handle.net/1721.1/163718" rel="alternate"/>
<author>
<name>Velez, Gustavo A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163718</id>
<updated>2025-11-18T06:27:27Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Trapping and Laser Cooling an Ensemble of Ytterbium-171 Atoms for use in an Atomic Clock
Velez, Gustavo A.
Optical lattice clocks require careful preparation of atomic ensembles in order to ensure homogeneous interactions with the clock laser. We demonstrate loading and laser cooling of an ensemble of ytterbium-171 atoms in a 2D optical dipole trap created by an optical cavity. Our loading method ensures that all atoms are located in the intersection of 2 perpendicular dipole traps as verified through absorption imaging. Raman sideband cooling was used to cool the atomic ensemble from 15.7 uK to 6.3 uK as measured through optical sideband spectroscopy on the 578 nm clock transition. Together, these steps improved the transfer of atoms during a Rabi oscillation from the ground to the clock state from approximately 45 percent excitation fraction to 80 percent excitation fraction. The final atomic ensemble preparation is now sufficient for running an atomic clock.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Improving and Analyzing Model Merging Methods for Adaptation</title>
<link href="https://hdl.handle.net/1721.1/163717" rel="alternate"/>
<author>
<name>Pari, Jyothish</name>
</author>
<id>https://hdl.handle.net/1721.1/163717</id>
<updated>2025-11-18T06:27:02Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Improving and Analyzing Model Merging Methods for Adaptation
Pari, Jyothish
In this work, we explore the limitations of combining models by averaging intermediate features, referred to as model merging, and propose a new direction for achieving collective model intelligence through what we call compatible specialization. Current methods for model merging, such as parameter and feature averaging, struggle to effectively combine specialized models due to representational divergence during fine-tuning. As models specialize to their individual domains, their internal feature representations become increasingly incompatible, leading to poor performance when attempting to merge them for new tasks. We analyze this phenomenon using centered kernel alignment (CKA) and show that as models specialize, the similarity in their feature space structure diminishes, hindering their capacity for collective use. To address these challenges, we investigate routing-based merging strategies, which offer more flexible methods for combining specialized models by dynamically routing across different layers. This allows us to improve on existing methods by combining features from multiple layers rather than relying on fixed, layer-wise combinations. However, we find that these approaches still face limitations when layers within models are representationally incompatible. Our findings highlight the importance of designing new approaches for model merging that operate on well-defined input and output spaces, similar to how humans communicate through language rather than intermediate neural activations.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evaluating Differences in GPT-4 Treatment by Gender in Healthcare Applications</title>
<link href="https://hdl.handle.net/1721.1/163716" rel="alternate"/>
<author>
<name>Pan, Eileen</name>
</author>
<id>https://hdl.handle.net/1721.1/163716</id>
<updated>2025-11-18T06:27:26Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Evaluating Differences in GPT-4 Treatment by Gender in Healthcare Applications
Pan, Eileen
LLMs already permeate medical settings, supporting patient messaging, medical scribing, and chatbots. While prior work has examined bias in medical LLMs, few studies focus on realistic use cases or analyze the source of the bias. To assess whether medical LLMs exhibit differential performance by gender, we audit their responses and investigate whether the disparities stem from implicit or explicit gender cues. We conduct a large-scale human evaluation of GPT-4 responses to medical questions, including counterfactual gender pairs for each question. Our findings reveal differential treatment based on the original patient gender. Specifically, responses for women more often recommend supportive resources, while those for men advise emergency care. Additionally, LLMs tend to downplay medical urgency for female patients and escalate it for male patients. Given rising interest in “LLM-as-a-judge” approaches, we also evaluate whether LLMs can serve as a proxy for human annotators in identifying disparities. We find that LLM-generated annotations diverge from human assessments in heterogeneous ways, particularly regarding error detection and relative urgency.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Highly Integrated Graphene-Based Chemical Sensing Platform for Structural Monitoring Applications</title>
<link href="https://hdl.handle.net/1721.1/163715" rel="alternate"/>
<author>
<name>López Ángeles, Christian Emmanuel</name>
</author>
<id>https://hdl.handle.net/1721.1/163715</id>
<updated>2025-11-18T06:27:20Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Highly Integrated Graphene-Based Chemical Sensing Platform for Structural Monitoring Applications
López Ángeles, Christian Emmanuel
Two-dimensional materials, such as graphene, hold promise for sensing applications. Graphene's remarkable surface-to-volume ratio, when employed as a transducer, enables the sensor channel to be readily modulated in response to chemical changes in proximity to its surface, effectively converting chemical signals into the electrical domain. However, their utilization has been constrained due to variations in device-to-device performance arising from synthesis and fabrication processes. To address this challenge, we employ Graphene Field Effect Transistors (GFETs) in developing a robust and multiplexed chemical sensing platform. This platform comprises a silicon chip with multiple arrays of sensing units distributed on its surface. This chip is coupled with custom-designed high-speed readout electronics for structural monitoring applications. For example, in harsh environmental conditions, structures constructed from reinforced concrete may experience degradation due to corrosion, a chemical process initiated by carbonation from atmospheric CO₂ and significant fluctuations in temperature and humidity. Under normal conditions, concrete maintains a pH level within the alkaline range of 13 to 14. However, when subjected to carbonation, its pH decreases to values between 8 and 9. Our platform excels in real-time pH monitoring. By conducting I-V sweep measurements in the sensor channel, we have established a correlation between [H⁺] concentration and the device transfer characteristics, i.e. gate-source voltage (&#119881;_&#119866;&#119878;) at graphene's Dirac point with an accuracy of roughly 97%. Additionally, we evaluate changes in graphene channel resistance induced by pH variations. This system and correlation allow for the prompt detection of any deviations induced by corrosion within a concrete environment.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Towards More Interpretable AI With Sparse Autoencoders</title>
<link href="https://hdl.handle.net/1721.1/163714" rel="alternate"/>
<author>
<name>Engels, Joshua</name>
</author>
<id>https://hdl.handle.net/1721.1/163714</id>
<updated>2025-11-18T06:26:52Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Towards More Interpretable AI With Sparse Autoencoders
Engels, Joshua
While large language models demonstrate remarkable capabilities across diverse domains, the specific representations and algorithms they learn remain largely unknown. The quest to understand these mechanisms holds dual significance: scientifically, it represents a fundamental inquiry into the principles underlying intelligence, while practically–and with growing urgency– it is vital for mitigating risks from these very same increasingly powerful systems. The initial section of this thesis tackles this challenge of interpreting internal language model representations (features) by employing sparse autoencoders (SAEs). An SAE decomposes neural network hidden states into a potentially more interpretable basis. In Chapter 2, we introduce an unsupervised, SAE-based methodology that successfully identifies inherently multi-dimensional features. Notably, we establish that language models causally represent concepts such as days of the week and months of the year using circular structures. This work provided the first definitive evidence of causal, multi-dimensional features, thereby refuting the one-dimensional linear representation hypothesis. Chapter 3 further assesses whether SAEs identify “true” atomic language model features. We compare the generalization performance and data efficiency of linear probes trained on SAE latents against those trained on the original hidden state basis. The negative outcomes of these experiments suggest limitations in SAEs for capturing the true ontology of language models. Motivated by the aforementioned limitations, the second part of this thesis investigates sparse autoencoders themselves, exploring potential improvements and characterizing their failure modes. Chapter 4 examines the portion of activations not reconstructed by SAEs, which we term “Dark Matter.” We find that a significant fraction of this dark matter is linearly predictable, and furthermore, that specific tokens poorly reconstructed by SAEs remain largely consistent across SAE sizes and sparsities. This suggests that SAEs may systematically fail to capture certain input subspaces, which we hypothesize to contain inherently dense features. Subsequently, Chapter 5 investigates a method to enhance SAE utility: freezing the learned SAE parameters and finetuning the surrounding language model components to minimize KL divergence with the original model’s output distribution. This technique results in a 30% to 55% decrease in the cross-entropy loss gap incurred by inserting the SAE into the model.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Transmission Line Dynamics Modeling For Power Electronics-Enabled Control in the Electric Power Systems</title>
<link href="https://hdl.handle.net/1721.1/163713" rel="alternate"/>
<author>
<name>Lawson, Riley E.</name>
</author>
<id>https://hdl.handle.net/1721.1/163713</id>
<updated>2025-11-18T06:27:23Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Transmission Line Dynamics Modeling For Power Electronics-Enabled Control in the Electric Power Systems
Lawson, Riley E.
In the analysis and operation of electric power systems, understanding the rates at which dynamic phenomena evolve is critical. Classically, power systems operate on multiple time scales, with slower mechanical dynamics from synchronous machines, faster electromechanical controls and protection, and very fast electrical dynamics from transmission networks. This time scale separation results in system modeling techniques which neglect certain component dynamics. However, in systems with significant penetration of power electronic devices and under fast time scale phenomena, the rates at which dynamics evolve become less separated, necessitating the modeling of all system dynamics. In large-scale systems, this becomes computationally challenging due to the high dimensionality of the interconnected system model. This work investigates the role transmission line dynamics play at very fast time scales in power systems. Theoretical results are presented to analyze which transmission line dynamics contribute significantly to power system dynamics, allowing for the intelligent incorporation of transmission line dynamics into computationally tractable models. For the first time, the use of control co-design techniques are demonstrated algorithmically to design fast power electronics-enabled control to stabilize unstable dynamics in electric power systems. This technique allows the design of controls, in an iterative way, to create stable interconnected systems. Finally, transmission line modeling impacts on the design of protection on fast time scales is analyzed. This work presents techniques to protect from short circuits in response to load disconnections, and introduces DC circuit breaker configurations to cause current commutation. In the modern day, power systems operators possess the technology to implement fast control of dynamics, however, due to insufficient information on how to model and prepare for them, system operators instead rely on using conventional, overly conservative control schemes. This work aims to bridge this gap by presenting methodologies to incorporate these dynamics into next-generation system models, and how to design control and protection to mitigate the risks these fast dynamics pose.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Foundation Models for Protein Phenotype Prediction</title>
<link href="https://hdl.handle.net/1721.1/163712" rel="alternate"/>
<author>
<name>Calef, Robert</name>
</author>
<id>https://hdl.handle.net/1721.1/163712</id>
<updated>2025-11-18T06:27:09Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Foundation Models for Protein Phenotype Prediction
Calef, Robert
Understanding the roles of human proteins remains a major challenge, with approximately 20% of human proteins lacking known functions and more than 40% missing context-specific functional insights. Even well-annotated proteins are often poorly characterized in diverse biological contexts, disease states, and perturbations. We present ProCyon, a foundation model for modeling, generating, and predicting protein phenotypes across five interrelated knowledge domains: molecular functions, therapeutic mechanisms, disease associations, functional protein domains, and molecular interactions. To support this, we created ProCyon-Instruct, a dataset of 33 million protein phenotype instructions, representing a comprehensive resource for multiscale protein phenotypes. By co-training a large language model with multimodal molecular encoders, ProCyon integrates phenotypic and protein data. A novel architecture and instruction tuning strategy allow ProCyon to process arbitrarily interleaved proteinand-phenotype inputs, achieve zero-shot task transfer, and generate free-form text phenotypes interleaved with retrieved protein sequence, structure, and drug modalities in a single unified model.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Functionalization of CNFET arrays for chemical sensing</title>
<link href="https://hdl.handle.net/1721.1/163711" rel="alternate"/>
<author>
<name>Song, Jaekang</name>
</author>
<id>https://hdl.handle.net/1721.1/163711</id>
<updated>2025-11-18T06:26:43Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Functionalization of CNFET arrays for chemical sensing
Song, Jaekang
Practical deployment of gas sensors for general-purpose applications requires integrated chips that operate at room temperature. However, real-world implementation has been limited by challenges such as the integration of highly sensitive and selective sensors, as well as insufficient statistical validation. In this work, we present an integrated gas sensor array comprising 2048 carbon nanotube field-effect transistors (CNFETs), functionalized with conductive metal-organic frameworks (cMOFs) and metal nanoparticles. Our functionalization approach enhances sensor responses by up to two orders of magnitude and enables on-chip pattern generation. Furthermore, the large number of redundant sensors allows for statistically significant measurements. The improved sensitivity is attributed to increased Schottky barrier modulation. We also demonstrate the chip’s capability to classify bacteria and yeast based on the gas mixtures emitted from cultures grown on agar plates. This work highlights the potential of integrated gas sensors as a practical, rapid, and cost-effective approach for general gas sensing applications, including biomedical applications.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Machine Learning Methods for Single Cell RNA-Sequencing Data to Improve Clinical Oncology</title>
<link href="https://hdl.handle.net/1721.1/163710" rel="alternate"/>
<author>
<name>Boiarsky, Rebecca</name>
</author>
<id>https://hdl.handle.net/1721.1/163710</id>
<updated>2025-11-18T03:03:21Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Machine Learning Methods for Single Cell RNA-Sequencing Data to Improve Clinical Oncology
Boiarsky, Rebecca
Single-cell RNA sequencing (scRNA-seq) offers a detailed view of the cellular and phenotypic composition of healthy and diseased tissues. While machine learning (ML) methods are well-suited for the high-dimensional nature of scRNA-seq data, current computational tools face limitations, particularly when confronted with data from clinical oncology. This thesis presents the development and application of ML techniques for scRNA-seq data to address key computational challenges, with a focus on challenges in clinical oncology. It covers four key areas: identifying gene signatures and biomarkers in multiple myeloma, developing methods to account for somatic copy number variations in tumor samples, benchmarking large, pre-trained scRNA-seq foundation models, and creating a framework for predicting clinical outcomes using patient-level representations of single-cell data. Together, these studies aim to develop and evaluate novel ML algorithms for scRNA-seq data which can unlock actionable insights for personalized medicine.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>High-efficiency, low-loss Floquet Josephson Traveling&#13;
Wave Parametric Amplifier</title>
<link href="https://hdl.handle.net/1721.1/163709" rel="alternate"/>
<author>
<name>Wang, Jennifer</name>
</author>
<id>https://hdl.handle.net/1721.1/163709</id>
<updated>2025-11-18T06:26:56Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">High-efficiency, low-loss Floquet Josephson Traveling&#13;
Wave Parametric Amplifier
Wang, Jennifer
Advancing error-corrected quantum computing and fundamental science necessitates quantum-limited amplifiers with near-ideal quantum efficiency and multiplexing capability. However, existing solutions achieve one at the expense of the other; for example, Josephson traveling wave parametric amplifiers (JTWPAs) are highgain, broadband, and chip-based quantum amplifiers that conventionally incur a bandwidth-noise tradeoff. When operated at 20-dB gain and instantaneous bandwidths of a few GHz, JTWPAs typically reach near-quantum limited intrinsic efficiencies of 70% - 85% relative to that of an ideal phase-preserving quantum amplifier. This is due to information leakage to the sidebands of the JTWPA, which can be recovered by adiabatically transforming the input modes to Floquet modes of the system within the device. In this thesis, we experimentally demonstrate the first Floquet-mode travelingwave parametric amplifier (Floquet TWPA). Fabricated in a superconducting qubit process, this Floquet TWPA achieves minimal dissipation, quantum-limited noise performance, and broadband operation. Our device exhibits &gt; 20-dB amplification over a 3-GHz instantaneous bandwidth, &lt;0.5 -dB average in-band insertion loss, and the highest-reported intrinsic quantum efficiency for a TWPA of 92.1±7.6%, relative to an ideal phase-preserving amplifier. When measuring a superconducting qubit, our Floquet TWPA enables a system measurement efficiency of 65.1 ± 5.8%, the highest-reported in a superconducting qubit readout experiment utilizing phase-preserving amplifiers to the best of our knowledge. Finally, we discuss the noise limitations of our current experimental setup, as well as impedance matching strategies that will enable us to push towards ideal JTWPA performance. These general-purpose Floquet TWPAs are suitable for fast, high-fidelity multiplexed readout in large-scale quantum systems and future monolithic integration with quantum processors.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Towards Scalable Robot Learning without Physical Robots</title>
<link href="https://hdl.handle.net/1721.1/163708" rel="alternate"/>
<author>
<name>Park, Younghyo</name>
</author>
<id>https://hdl.handle.net/1721.1/163708</id>
<updated>2025-11-18T06:26:42Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Towards Scalable Robot Learning without Physical Robots
Park, Younghyo
The development of generalist robots—capable of performing a wide range of tasks in diverse environments—requires large-scale datasets of robot interactions. Unlike language or vision domains, where data can be passively collected at scale, robotic data collection remains costly, labor-intensive, and constrained by physical hardware. This thesis explores two complementary directions to overcome this challenge. First, we examine the limitations of training robots from scratch using reinforcement learning (RL). While RL has achieved promising results in simulation, its scalability is hindered by a largely overlooked bottleneck: environment shaping. Designing suitable rewards, action and observation spaces, and task dynamics typically requires extensive human intervention. We formalize environment shaping as a critical optimization problem and introduce tools and benchmarks to study and eventually automate this process, a necessary step toward general-purpose RL. Second, we introduce an alternative paradigm for robot data collection that does not rely on real-world robots. Using the Apple Vision Pro, we develop DART, an augmented reality (AR) teleoperation platform that streams human hand motions to cloud-hosted robot simulations. This setup enables scalable, low-latency collection of high-quality robot demonstrations without the overhead of physical setup or maintenance. Our user studies show that DART more than doubles data collection throughput while reducing operator fatigue, and policies trained in simulation using this data successfully transfer to the real world. Together, these contributions address two key bottlenecks in robot learning: the human effort required for RL environment design, and the dependence on physical robots for data. They lay the groundwork for scalable, accessible approaches to training generalist robot models.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Reconfigurable, Distributed-Memory Accelerator for Sparse Applications</title>
<link href="https://hdl.handle.net/1721.1/163707" rel="alternate"/>
<author>
<name>Golden, Courtney K.</name>
</author>
<id>https://hdl.handle.net/1721.1/163707</id>
<updated>2025-11-18T06:27:16Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">A Reconfigurable, Distributed-Memory Accelerator for Sparse Applications
Golden, Courtney K.
Iterative sparse matrix computations lie at the heart of many scientific computing and graph analytics algorithms. On conventional systems, their irregular memory accesses and low arithmetic intensity create challenging memory bandwidth bottlenecks. To overcome such bottlenecks, distributed-SRAM architectures use tiled arrays of high-bandwidth local storage to achieve very high aggregate memory bandwidth. However, current distributedSRAM architectures suffer from either poor programmability due to over-specialization or poor compute performance due to inefficient general-purpose hardware. This thesis proposes Quartz, a new architecture that uses short dataflow tasks and reconfigurable compute in a distributed-SRAM system to deliver both high performance and high programmability. Unlike traditional sparse CGRAs or on-die reconfigurable engines, Quartz allows reconfigurable compute to be highly utilized and scaled by (1) providing high memory bandwidth to each processing element and (2) introducing a task-level dataflow execution model that fits this new setting. Our execution model dynamically reconfigures tile hardware based on inter-tile messages to execute tasks on local data with fine-grained data partitioning across tiles. To make execution efficient, we explore novel data partitioning techniques that use graph and hypergraph partitioning to minimize network traffic and balance load. This is especially challenging for computations where one operand’s sparsity pattern (i.e., distribution of nonzeros) exhibits dynamic behavior across iterations, and we are the first to provide techniques to address this case. To ensure programmability, we show how a wide range of computations (expressed in an extended version of tensor algebra’s Einsum notation) and flexible data distributions can be systematically captured in small tasks for execution on Quartz. We evaluate Quartz in simulation, using an 8-chiplet design with 2,048 tiles and 824 MB of SRAM per chiplet, running six different iterative sparse applications from scientific computing and graph analytics. Quartz’s architecture, data partitioning techniques, and programming model together achieve gmean 26.2× speedup over the prior state-of-the-art programmable distributed-SRAM architecture.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dipole Contact Engineering for Field-Effect Transistors&#13;
Based on Two-Dimensional Materials</title>
<link href="https://hdl.handle.net/1721.1/163706" rel="alternate"/>
<author>
<name>Gupta, Ayush Sagar</name>
</author>
<id>https://hdl.handle.net/1721.1/163706</id>
<updated>2025-11-18T06:27:03Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Dipole Contact Engineering for Field-Effect Transistors&#13;
Based on Two-Dimensional Materials
Gupta, Ayush Sagar
In the next several years and decades, the expanded use of artificial intelligence and edge computing will demand more powerful and energy-efficient electronics. Two-dimensional (2D) semiconductors, and in particular transition metal dichalcogenides (TMDs) such as molybdenum disulfide (MoS₂), are promising candidates for future field-effect transistors. TMDs can enable aggressive lateral and vertical device scaling, and they can add computing power density and new memory and sensing capabilities via 3D integration. However, several key challenges remain before 2D-channel transistors become commercially viable, including large contact resistances at the source and drain due to the van der Waals surface of 2D materials and the Fermi level pinning effect. A variety of methods have been explored to make ohmic contacts to MoS₂, the most promising of which so far is to use semimetals such as Bi and Sb, however these materials suffer from thermal instability. This thesis addresses these challenges by (1) exploring the ultimate limit of contact metal workfunction scaling to better understand the metal-MoS₂ interface, and (2) introducing a new method of reducing contact resistance to 2D materials by inserting dipole layers at the contact interface. Initial work on ultralow-workfunction (ULWF) metal deposition on MoS₂ and subsequent device fabrication is presented, though further study is required to mitigate effects from deposition equipment and the reactive nature of these metals. In parallel, the Janus TMD MoSSe is explored as an example system for dipole contacts, with extensive material characterization of the Janus TMD MoSSe being performed, and the effect of a dipole layer on the contact properties of FETs being established. Together, these results are a significant step towards solving one of the major hurdles for the commercial introduction of 2D-channel transistors.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Specialization of Vision Representations with Personalized&#13;
Synthetic Data</title>
<link href="https://hdl.handle.net/1721.1/163705" rel="alternate"/>
<author>
<name>Chae, Nayoung (Julia)</name>
</author>
<id>https://hdl.handle.net/1721.1/163705</id>
<updated>2025-11-18T06:26:48Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Specialization of Vision Representations with Personalized&#13;
Synthetic Data
Chae, Nayoung (Julia)
Modern vision models excel at general purpose downstream tasks. It is unclear, however, how they may be used for personalized vision tasks, which are both fine-grained and data-scarce. Recent works have successfully applied synthetic data to general-purpose representation learning, while advances in Text-to-Image (T2I) diffusion models have enabled the generation of personalized images from just a few real examples. Here, we explore a potential connection between these ideas, and formalize the challenge of using personalized synthetic data to learn personalized representations, which encode knowledge about an object of interest and may be flexibly applied to any downstream task relating to the target object. We introduce an evaluation suite for this challenge, including reformulations of two existing datasets and a novel dataset explicitly constructed for this purpose, and propose a contrastive learning approach that makes creative use of image generators. We show that our method improves personalized representation learning for diverse downstream tasks, from recognition to segmentation, and analyze characteristics of image generation approaches that are key to this gain.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimizing Microservice Design Parameters</title>
<link href="https://hdl.handle.net/1721.1/163704" rel="alternate"/>
<author>
<name>Chen, Qihang</name>
</author>
<id>https://hdl.handle.net/1721.1/163704</id>
<updated>2025-11-18T06:27:22Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Optimizing Microservice Design Parameters
Chen, Qihang
Production-level cloud services are increasingly deployed as microservices. An important question is given application logic, how to design an effective microservice architecture. Existing studies have underscored the importance of microservice cohesiveness and coupling, using these metrics to drive automatic design optimizations. However, they have not accounted for the potential impact that such design changes may have on overall system performance, which is confirmed by our case study. In this work, we present a system that can automatically identify microservice designs that are well-balanced across performance, coupling, and cohesiveness to meet cloud provider’s requirements. the system uses a multi-round dynamic programming approach, selectively identifies promising design candidates, generates the corresponding microservice code, measures and compares the results to ultimately determine the optimal design. The designs produced by our system typically achieve over 20% throughput improvement under the same QoS with less than a 10% increase in average LCOM, and often outperform the original benchmark architectures across all evaluated metrics.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>City in the River: Regeneration of the Santa Catarina River as an Intermittent Urban River</title>
<link href="https://hdl.handle.net/1721.1/163703" rel="alternate"/>
<author>
<name>Martínez Chapa, Daniela</name>
</author>
<id>https://hdl.handle.net/1721.1/163703</id>
<updated>2025-11-18T06:27:13Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">City in the River: Regeneration of the Santa Catarina River as an Intermittent Urban River
Martínez Chapa, Daniela
Full of dichotomies, the Santa Catarina River is both dry and wet, present but forgotten, central yet disconnected, valued yet feared. How should an intermittent river in a dense urban context be regenerated? This thesis reimagines its ecological, hydrological, and public potential. Set in Monterrey, Mexico, this research addresses the urgent need to rethink water management in the face of the intensifying climate crisis through different urban systems and regeneration strategies within the river basin. Focusing on the Santa Catarina River, long dismissed as a plot, void, or threat, this work proposes how an intermittent river might be re-understood not as an absence of activities or function but as a space of seasonal abundance, ecological possibility, and urban interaction. Historically engineered for control, the river has been used as a flood channel, markets, sports complexes, transportation corridors, and more. However, rarely has it been seen, treated, or protected as a river. Through the development of a pilot zone, this research suggests a replicable framework of regenerative strategies to slow down, retain, and absorb water flows, supporting both dry and wet season dynamics. These include restoring riparian ecologies, reintroducing soft edges, enabling groundwater recharge, and designing permeable, public, and accessible urban interventions that reconnect the city with the riverbed. This thesis is not a fixed proposal but a living toolkit, an adaptable model to be tested, expanded, and reimagined in the pilot as time and nature take over. At stake is not only the river’s future but also the city’s capacity to shift from resistance to relation, becoming one with it, becoming a city in the river.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Banjiha Stories (2025)</title>
<link href="https://hdl.handle.net/1721.1/163702" rel="alternate"/>
<author>
<name>Park, Habin</name>
</author>
<id>https://hdl.handle.net/1721.1/163702</id>
<updated>2025-11-18T06:27:00Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Banjiha Stories (2025)
Park, Habin
Banjiha are everywhere in Seoul. You don’t always see them—tucked below eye level, half-hidden underground—but they’re there. First built as military bunkers after the Korean War, later turned into last-resort housing, banjiha have become symbols of urban failure—spaces of neglect, flooding disasters, a problem to be erased. Both media portrayals and policy responses have advocated for their disappearance. But does removal truly protect the people who call these spaces home? This thesis moves beyond the idea that banjiha are simply failures of the city. Through three homes —three lives, it traces how these spaces are shaped, not only by policies and architecture but by the people who inhabit them. A home vulnerable to flooding, where protections exist—but not with the greatest risk. A place worn by time, held together by quiet repairs. A financial foothold in a city where affordable housing is disappearing. A space of temporary sacrifice. A shelter to return to, again and again. This is not just a story of risk or resilience, neglect or demolition. It is a story of how people live; how they adapt, negotiate, and make do in spaces that were never designed with them in mind. Rather than asking how to erase banjiha, this thesis asks: What can we learn by noticing them? What would it mean to shift the conversation—from removal to recognition, from assumption to understanding? To see these homes is to recognize not just their constraints, but the small interventions that could reshape them: a door that opens both ways so no one is trapped, policies that hold upstairs owners accountable for leaks, materials layered to prevent mold rather than mask it. Not grand reinventions, but deliberate shifts—openings for a different way forward. But before deciding what must change, we must first learn to see.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Probabilistic Inference for Inference Time Scaling of Language Models</title>
<link href="https://hdl.handle.net/1721.1/163701" rel="alternate"/>
<author>
<name>Puri, Isha</name>
</author>
<id>https://hdl.handle.net/1721.1/163701</id>
<updated>2025-11-18T06:26:45Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Probabilistic Inference for Inference Time Scaling of Language Models
Puri, Isha
Large language models (LLMs) have achieved significant performance gains via scaling up model sizes and/or data. However, recent evidence suggests diminishing returns from such approaches, motivating a pivot to scaling test-time compute. Existing deterministic inference-time scaling methods, usually with reward models, cast the task as a search problem, but suffer from a key limitation: early pruning. Due to inherently imperfect reward models, promising trajectories may be discarded prematurely, leading to suboptimal performance. We propose a novel inference-time scaling approach by adapting particle-based Monte Carlo methods. Our method maintains a diverse set of candidates and robustly balances exploration and exploitation. Our empirical evaluation demonstrates that our particle filtering methods have a 4–16x better scaling rate over deterministic search counterparts on both various challenging mathematical and more general reasoning tasks. Using our approach, we show that Qwen2.5-Math-1.5B-Instruct surpasses GPT-4o accuracy in only 4 rollouts, while Qwen2.5-Math-7B-Instruct scales to o1 level accuracy in only 32 rollouts. Our work not only presents an effective method to inference-time scaling, but also connects rich literature in probabilistic inference with inference-time scaling of LLMs to develop more robust algorithms in future work. Code, videos, and further information available at probabilistic-inference-scaling.github.io/
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Toward Systematic Integration of Inverter-Based Resources in Electricity Markets</title>
<link href="https://hdl.handle.net/1721.1/163700" rel="alternate"/>
<author>
<name>Pierre, Jordina</name>
</author>
<id>https://hdl.handle.net/1721.1/163700</id>
<updated>2025-11-18T06:26:34Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Toward Systematic Integration of Inverter-Based Resources in Electricity Markets
Pierre, Jordina
This thesis introduces a multi-layer control architecture for inverter-based resources (IBRs), separating fast local feedback control from slower self-dispatch and system-level market coordination. Existing integration methods for IBRs limit their control flexibility and completely restrict their market participation potential. Two common practices include treatment of IBRs as negative loads and setting a fixed power factor during grid commissioning. Modeling IBRs as negative loads excludes them from dispatch coordination in electricity markets, significantly limiting incentive for contribution to grid reliability and flexibility. Likewise, a fixed power factor prevents the IBR from providing voltage support through reactive power absorption/injection. With a fixed power factor, constant real and reactive power limits are imposed on the inverter, even during voltage transients, ignoring the fact that an inverter’s available capacity can vary significantly due to internal current constraints and the power provided by the renewable energy source. To address the need for reactive power adjustment in IBRs and pave the way for their active participation in electricity markets , this work presents a coordinated control approach that enables IBRs to transition into active, self-dispatching participants. This thesis proposes a first layer hybrid PLL plus Q-V droop based controller in the first layer which governs millisecond-scale autonomous behavior, including low-voltage ride-through and real-time power adjustment based on voltage deviations at the point of common coupling and irradiance fluctuations from the renewable energy source, in this case solar. Given implementation from the first layer and predicted irradiance, Layer 2, which will be implemented in future work, uses a model predictive controller to provide bid functions for both real and reactive power while keeping voltage at the Point of Common Coupling within its limits. Finally, the third layer performs centralized market clearing through a security-constrained optimization by the system operator. By advocating for self-dispatched, constraint aware control, this thesis challenges the prevailing passive modeling paradigm and offers a structured, physics-informed alternative. It demonstrates how IBRs can evolve into reliable, market-integrated assets, enabling smarter renewable integration and a more resilient, cost-effective and decarbonized grid.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Approximations to worst-case data dropping: unmasking failure modes</title>
<link href="https://hdl.handle.net/1721.1/163699" rel="alternate"/>
<author>
<name>Huang, Jenny Yijian</name>
</author>
<id>https://hdl.handle.net/1721.1/163699</id>
<updated>2025-11-18T06:28:40Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Approximations to worst-case data dropping: unmasking failure modes
Huang, Jenny Yijian
A data analyst might worry about generalization if dropping a very small fraction of data points from a study could change its substantive conclusions. Checking this non-robustness directly poses a combinatorial optimization problem and is intractable even for simple models and moderate data sizes. Recently various authors have proposed a diverse set of approximations to detect this non-robustness. In the present work, we show that, even in a setting as simple as ordinary least squares (OLS) linear regression, many of these approximations can fail to detect (true) non-robustness in realistic data arrangements. We focus on OLS in the present work due its widespread use and since some approximations work only for OLS. Of the approximations that do not fail our tests, we find not only that a simple recursive greedy algorithm is the most conceptually straightforward but also that it can be orders of magnitude faster to run than the others.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Highly Scaled p-GaN-gate HEMTs for Low Voltage Power Electronics</title>
<link href="https://hdl.handle.net/1721.1/163698" rel="alternate"/>
<author>
<name>Darmawi-Iskandar, Patrick</name>
</author>
<id>https://hdl.handle.net/1721.1/163698</id>
<updated>2025-11-18T06:28:06Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Highly Scaled p-GaN-gate HEMTs for Low Voltage Power Electronics
Darmawi-Iskandar, Patrick
Rising global energy demands, driven by the advent of artificial intelligence (AI), cloud computing, and Internet of Things (IoT) devices, underscore the need for more efficient power electronics. In particular, power switches based on wide bandgap semiconductors such as gallium nitride (GaN) have emerged as promising alternatives to traditional silicon devices for low-voltage (10-100 V) applications. This work investigates the design, fabrication, and scaling of p-GaN-gate highelectron-mobility transistors (HEMTs). A p-GaN-gate epitaxial structure was developed with considerations for short channel effects. A self-aligned, gate-first process employing tungsten metallization was implemented to enable gate lengths as small as 100 nm. Device scaling was studied systematically, revealing the importance of gate aspect ratio and gate-to-drain spacing in managing short channel effects and maintaining breakdown voltage. Electrical characterization showed strong device performance, although contact resistance accounted for a substantial portion of total on-resistance. To address this, a modified fabrication approach incorporating regrown contacts was introduced, resulting in reduced contact resistance and improved overall device characteristics. The combined results highlight practical strategies for enhancing the performance and scalability of p-GaN-gate HEMTs for next-generation low-voltage power electronics.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modelling Diarists: Diary-writing and Moral Anxieties in China, 1918–62</title>
<link href="https://hdl.handle.net/1721.1/163697" rel="alternate"/>
<author>
<name>Li, Tien Yi</name>
</author>
<id>https://hdl.handle.net/1721.1/163697</id>
<updated>2025-11-18T06:28:04Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Modelling Diarists: Diary-writing and Moral Anxieties in China, 1918–62
Li, Tien Yi
This thesis is a history of diary-writing in China from 1918 through 1961. Diaries are an increasingly popular but still inadequately understood primary source for historians of modern China. Previous scholars have suggested that, in the twentieth century, diary-writing became increasingly popular due to Japanese and Soviet influences, the increasing availability of manufactured blank diaries, and ruling governments that used diary-writing as a way of enforcing ideological conformity. This thesis traces an alternative history, starting from the popularization of published diaries in Shanghai in the long 1920s; to diaries’ emergence as a recognizable genre that could discoursed be theorized; to the moment the genre gained its reputation as a kind of self-expression par excellence; to its widespread inclusion into school curricula; to loosely connected attempts on the part of educators to delimit a normative way of diarywriting that, ironically, increasingly regimented self-expression. In doing so, this thesis contributes to the existing historiography by offering three correctives: I argue that 1) the initial proliferation of diaries was economically––not ideologically––motivated, 2) the popularization of diary-writing was not a concerted effort orchestrated by China’s political leaders but at best a loosely connected effort led by a middling class of educators, textbook writers, and intellectuals, and 3) diary-writing was not only regimented by communist ideology in the Maoist era but shifting moral principles and anxieties throughout the twentieth century. All in all, this thesis demonstrates the value of diaries for studying moral knowledge, epistemologies, and anxieties at the grassroots in midcentury China.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Image of the Tunnels: Mapping Perception of the MIT Underground</title>
<link href="https://hdl.handle.net/1721.1/163696" rel="alternate"/>
<author>
<name>Ravichandran, Shruthi</name>
</author>
<id>https://hdl.handle.net/1721.1/163696</id>
<updated>2025-11-18T06:29:06Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">The Image of the Tunnels: Mapping Perception of the MIT Underground
Ravichandran, Shruthi
Kevin Lynch’s influential book, The Image of the City, proposes five elements by which residents of a space create mental maps of their neighborhood and use these to define their spatial perception and navigation: paths, edges, districts, nodes, and landmarks. The MIT Tunnels are spaces utilized daily for a myriad of purposes: to reach labs and offices, to avoid slow-moving tourist traffic and biting Boston cold, and to explore MIT’s iconic hacking spots. This work exploresif Lynchian principles apply to these pseudourban underground spaces and culminates in a GeoGuessr-inspired virtual game where students can test and grow their knowledge of tunnel navigation. The hypotheses tested in this thesis project extend Lynch’s framework to relevant tunnel analogs: familiar paths, districts (clusters of buildings and departments), tunnel landmarks, and cross-level relationships between above- and underground mental maps. These hypotheses were tested via preliminary surveys on MIT students. Once completed, the subsequent experiments involved two games - one physically in the tunnels, one online with images of the tunnels gathered with a 360-camera. The games involved having participants navigate to a target building from a starting point. After the in-person game was completed, participants answered a series of questions about their route. These races offered information about familiar paths, landmarks, and strategies participants used to navigate the tunnels. Results from this game confirmed conclusions drawn from preliminary surveys that Lynchian principles do extend to the tunnels via relevant analogs, and above-ground knowledge and connection points offered even more information than Lynch’s five principles alone. Students consistently rely on heavily traveled paths, navigating through familiar districts, and using above ground knowledge to traverse in unknown underground buildings. This work can be extended to help grow students’ understanding of these tunnels, fostering further creativity and student expression in this complex network of spaces.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Parallel Batch-Dynamic Graph Algorithms: Coreness Decomposition and Spanners</title>
<link href="https://hdl.handle.net/1721.1/163695" rel="alternate"/>
<author>
<name>Koo, Jaehyun</name>
</author>
<id>https://hdl.handle.net/1721.1/163695</id>
<updated>2025-11-18T06:27:54Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Parallel Batch-Dynamic Graph Algorithms: Coreness Decomposition and Spanners
Koo, Jaehyun
This thesis contributes to the burgeoning field of batch-dynamic parallel algorithms by presenting parallel batch-dynamic graph algorithms for coreness decomposition and spanners, as well as a number of other related problems. The first class of problems we consider involves approximating coreness decomposition and several closely related concepts, such as (subgraph) density estimation, arboricity estimation, and low out-degree orientations. These are extremely useful structures for organizing graphs based on their density. Our algorithms process any batch of edge insertions and deletions in polylogarithmic depth while using work that is linear in the batch size (up to logarithmic factors), in the worst case. The second class of problems we consider concerns graph spanners. Over the past two to three decades, graph sparsifications that approximately preserve key graph properties have become essential tools in algorithm design. In particular, spanners—reducing the number of edges while approximately preserving pairwise distances—have been widely studied. We present the first such algorithms for computing and maintaining spanners. These algorithms achieve near-optimal amortized runtime—processing each batch in polylogarithmic depth with work nearly linear in the batch size for any number of processors.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Bridging the Sim-to-Real Gap for Athletic Loco-Manipulation</title>
<link href="https://hdl.handle.net/1721.1/163694" rel="alternate"/>
<author>
<name>Fey, Nolan</name>
</author>
<id>https://hdl.handle.net/1721.1/163694</id>
<updated>2025-11-18T06:27:05Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Bridging the Sim-to-Real Gap for Athletic Loco-Manipulation
Fey, Nolan
Achieving athletic loco-manipulation on robots requires moving beyond traditional tracking rewards—which simply guide the robot along a reference trajectory—to task rewards that drive truly dynamic, goal-oriented behaviors. Commands such as “throw the ball as far as you can” or “lift the weight as quickly as possible” compel the robot to exhibit the agility and power inherent in athletic performance. However, training solely with task rewards introduces two major challenges: these rewards are prone to exploitation (reward hacking), and the exploration process can lack sufficient direction. To address these issues, we propose a two-stage training pipeline. First, we introduce the Unsupervised Actuator Net (UAN), which leverages real-world data to bridge the sim-to-real gap for complex actuation mechanisms without requiring access to torque sensing. UAN mitigates reward hacking by ensuring that the learned behaviors remain robust and transferable. Second, we use a pre-training and fine-tuning strategy that leverages reference trajectories as initial hints to guide exploration. With these innovations, our robot athlete learns to lift, throw, and drag with remarkable fidelity from simulation to reality.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Wound Designates a Subject</title>
<link href="https://hdl.handle.net/1721.1/163693" rel="alternate"/>
<author>
<name>Lum, Luca E.</name>
</author>
<id>https://hdl.handle.net/1721.1/163693</id>
<updated>2025-11-18T06:28:39Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">A Wound Designates a Subject
Lum, Luca E.
What haunts when haunting itself has been foreclosed? This thesis develops “ghostlessness” as a conceptual and aesthetic framework across my work in moving image, drawing, and writing. Ghostlessness refers to conditions that suppress haunting where it would otherwise emerge or be felt. Drawing from theoretical elaborations of hauntology, where the present is understood as structured by both suppressed pasts and unrealized futures, ghostlessness names the absence—or foreclosure—of that temporal disruption. It marks a contemporary condition in which systems oriented toward predictive governance and managed futurity preemptively neutralize rupture, sealing wounds before they can fester, reroute, or become sites of transformation. Through the works gathered here, I explore how ghostlessness functions not simply as absence but as affective and infrastructural suppression—rendering the spectral illegible, unaddressable, or unreal. Against this, my practice seeks to recapture the value of haunting in death-ridden, crisis-laden times where its presence is more prevalent than ever – hence its management, erasure, and suppression: ghostlessness.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Stylizing 3D Models With Generative AI for Fabrication</title>
<link href="https://hdl.handle.net/1721.1/163692" rel="alternate"/>
<author>
<name>Tejedor, Leandra</name>
</author>
<id>https://hdl.handle.net/1721.1/163692</id>
<updated>2025-11-18T06:28:05Z</updated>
<published>2024-05-01T00:00:00Z</published>
<summary type="text">Stylizing 3D Models With Generative AI for Fabrication
Tejedor, Leandra
This thesis presents two novel approaches for modifying 3D models using generative AI for stylization while ensuring the resulting models preserve the properties required for fabrication. The first method, Style2Fab, separates functional and stylistic sections of 3D models to enable targeted modifications that preserve the model's intended functionality. By distinguishing between these sections, Style2Fab allows for alterations that maintain the model's functional purpose while providing flexibility in its aesthetic design. This approach ensures that the modified models retain their original functionality after stylistic changes.&#13;
&#13;
The second method, MechStyle, incorporates finite element analysis (FEA) into the generative modeling pipeline to maintain the structural integrity of the modified models. By analyzing changes in stress values during a simulated drop test at various stages of the stylization process, MechStyle restricts changes to those that preserve the model's structural viability. This ensures that the resulting models are both stylistically accurate to the user's desired results and structurally sound for 3D printing.
</summary>
<dc:date>2024-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Limits of Recovering Planted Subgraphs</title>
<link href="https://hdl.handle.net/1721.1/163691" rel="alternate"/>
<author>
<name>Rajaraman, Amit</name>
</author>
<id>https://hdl.handle.net/1721.1/163691</id>
<updated>2025-11-18T06:28:02Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">The Limits of Recovering Planted Subgraphs
Rajaraman, Amit
Given an arbitrary subgraph H = Hₙ and p = pₙ ∈ (0, 1), the planted subgraph model is defined as follows. A statistician observes the union of the “signal,” which is a random “planted” copy H* of H, together with random noise in the form of an instance of an Erdős–Rényi graph ´ G(n, p). Their goal is to then recover the planted H* from the observed graph. Our focus in this work is to understand the minimum mean squared error (MMSE), defined in terms of recovering the edges of H*, as a function of p and H, for large n. A recent paper [MNS⁺23] characterizes the graphs for which the limiting (as n grows) MMSE curve undergoes a sharp phase transition from 0 to 1 as p increases, a behavior known as the all-or-nothing phenomenon, up to a mild density assumption on H. However, their techniques fail to describe the MMSE curves for graphs that do not display such a sharp phase transition. In this paper, we provide a formula for the limiting MMSE curve for any graph H = Hₙ, up to the same mild density assumption. This curve is expressed in terms of a variational formula over pairs of subgraphs of H, and is inspired by the celebrated subgraph expectation thresholds from probabilistic combinatorics [KK07]. Furthermore, we give a polynomial-time description of the optimizers of this variational problem. This allows one to efficiently approximately compute the MMSE curve for any dense graph H when n is large. The proof relies on a novel graph decomposition of H as well as a new minimax theorem which may be of independent interest. Our results generalize to the setting of minimax rates of recovering arbitrary monotone boolean properties planted in random noise, where the statistician observes the union of a planted minimal element A ⊆ [N] of a monotone property and a random Ber(p)^⊗N vector. In this setting, we provide a variational formula inspired by the so-called “fractional” expectation threshold [Tal10], again describing the MMSE curve (in this case up to a multiplicative constant) for large n.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Efficient Routing in the CityMesh Decentralized Fallback&#13;
Wireless Network</title>
<link href="https://hdl.handle.net/1721.1/163690" rel="alternate"/>
<author>
<name>Liu, Ziqian</name>
</author>
<id>https://hdl.handle.net/1721.1/163690</id>
<updated>2025-11-18T06:28:01Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Efficient Routing in the CityMesh Decentralized Fallback&#13;
Wireless Network
Liu, Ziqian
As modern communication systems increasingly rely on centralized network infrastructure, they become more vulnerable to disruptions caused by disasters, failures, or cyberattacks. To address this risk, CityMesh proposes a decentralized fallback wireless network that leverages existing Wi-Fi devices, such as access points (APs), in buildings to maintain essential connectivity during outages. However, achieving scalable and reliable message delivery in such a network, without introducing excessive overhead, poses significant challenges. This thesis presents a new routing protocol for CityMesh, designed to operate efficiently at city scale. We first identify the limitations of traditional shortest-path source routing in CityMesh’s context, including the use of unreliable links and overhead from redundant transmissions. To address these issues, we introduce a safer path selection metric that prioritizes link reliability, a waypoint-based routing compression scheme, and a conduit mechanism to increase robustness to local failures. Our protocol further supports compact routing tables through a grid-based addressing scheme, enabling constant-size packet headers and scalable routing decisions. Additionally, we propose a suppression strategy to reduce unnecessary transmissions both between and within buildings. Finally, we extend our approach to reconnect disconnected network segments by formulating a relay placement strategy based on map data and geometric heuristics. Additionally, to reconnect fragmented network segments, we develop a practical relay placement algorithm by leveraging on the convex hull optimization and re-using global map knowledge, which ensures fast relay point computation in feasible locations such as roads and bridges. Simulations across 20 global cities show that our routing protocol achieves up to 2× higher packet delivery rates and reduces transmission overhead by up to 28× compared to GPSR under high packet loss and realistic localization error. The routing table footprint sampled across 4 randomly selected cities shows on average under 2 KB memory usage per device. Our fast relay placement algorithm also demonstrates only a small number of relays are needed to achieve full network connectivity for most of the cities, which validates CityMesh’s core premise that existing urban Wi-Fi infrastructure is sufficient to support a robust, scalable decentralized fallback network with minimal augmentation.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>GPU-accelerated Inference for Discrete Probabilistic Programs</title>
<link href="https://hdl.handle.net/1721.1/163689" rel="alternate"/>
<author>
<name>Ghavami, Matin</name>
</author>
<id>https://hdl.handle.net/1721.1/163689</id>
<updated>2025-11-18T06:28:00Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">GPU-accelerated Inference for Discrete Probabilistic Programs
Ghavami, Matin
This thesis presents a comprehensive approach to GPU-accelerated inference for discrete probabilistic programs.  We make two key contributions : (1) a factor graph IR implemented in JAX that supports variable elimination and Gibbs sampling, and (2) a modeling DSL with a compiler that lowers programs to the factor graph IR. Our system enables significant performance optimizations through static analysis of the factor graph structure. Variable elimination is optimized by reduction to tensor contraction with optimized contraction paths, while Gibbs sampling is automatically parallelized through graph coloring techniques. Empirical evaluations on standard benchmarks demonstrate orders of magnitude performance improvements over existing systems, with the parallelized Gibbs sampler showing speed-ups of up to 144x on Bayesian networks and even greater improvements for models with regular graph topologies such as Ising models and hidden Markov models.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Vernaculars of Our Networks: From The Cloud to a Plurality of Grassroots Digital Infrastructures</title>
<link href="https://hdl.handle.net/1721.1/163688" rel="alternate"/>
<author>
<name>Hernandez-Cornejo, Mark A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163688</id>
<updated>2025-11-18T06:27:59Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">The Vernaculars of Our Networks: From The Cloud to a Plurality of Grassroots Digital Infrastructures
Hernandez-Cornejo, Mark A.
This thesis is concerned with DIY "off-the-cloud" networks as socio-technical models that can reinscribe a community's organizational processes, identity, and culture. It questions how these networks can break away from corporate and extractive services of "the cloud" in order to achieve digital sovereignty as well as resist the hegemonic understanding of Western universal technology. Rather than grafting an outside network onto a community, how might the nodes of a network emerge from the cultural ontologies and local knowledge systems, creating a "vernacular cloud," with political, epistemic, and ontological implications? The social practice of what I call 'net/work' involves the facilitation of local digital territories that create a grassroots politics of "organic internets." In Chapter One, recent attempts to break from monopolized services like Google and Facebook are examined, providing insight into why these networks are formed and how they “de-link” from “the cloud.” Drawing from Walter Mignolo's understanding of "de-linking," the thesis argues that this process is a political project that is also epistemologically and economically non-western. Chapter Two examines the notion of 'community' in community networks through the lens of grassroots organizing such as mutual aid, delving into the care and maintenance required for system administration. Chapter Two builds on Geri Augusto's understanding of "re/trans" as a project that has developed new assemblages of knowledge and integrated them into different landscapes. It examines community networks from the Global South, where network nodes have the potential to be cosmo-ontological. Chapter Three provides examples of the principles outlined in Chapters One and Two from my work in pursuit of technical autonomy within an organization.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sensing Buildings: Environmental Impact of Sensor Technologies&#13;
and Data Infrastructure in Buildings</title>
<link href="https://hdl.handle.net/1721.1/163687" rel="alternate"/>
<author>
<name>Lesina-Debiasi, Simon</name>
</author>
<id>https://hdl.handle.net/1721.1/163687</id>
<updated>2025-11-18T06:27:56Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Sensing Buildings: Environmental Impact of Sensor Technologies&#13;
and Data Infrastructure in Buildings
Lesina-Debiasi, Simon
Building operations and the construction sector are one of the largest contributors to global carbon emissions and energy consumption. While novel construction materials and insulation offer lower embodied carbon solutions, improved heating and cooling devices offer cost and energy effective building services. Above all, “smart” devices promise remote control, oversight, and optimization of building operations. With the rising implementation of AI solutions to every sector, it is important to see the digital devices as an interface to the material machinery they are connected to. The way through which we are introduced to these systems as solutions to environmental problems leaves out the operational and infrastructural costs of the devices. Making material design decisions that are conscious of the mining operations that source the rare earth minerals, to the pumping of oil for polymer coatings, to the chemical baths that separate it from the ore, all the way to the hard drives in server rigs that are cooled with water and driven by electricity, the cloud is nothing but materiality and resources. When evaluating buildings operations and construction techniques for sustainability considerations and environmental impact, connected services such as data networks and optimizations that rely on large server infrastructures and cloud computing are not part of the scope. This thesis reveals the missing components of energy evaluations in “smart” devices within the walls, floors, windows, doors, and roofs of our building, to create a framework through which building efficiency and sustainability can be reconsidered. Through historic research, literature reviews, and experiments, this work shines some light on the environmental impact of data infrastructure to which our buildings are connected. The work presented in this thesis does not claim to be comprehensive nor to solve the problem of optimizing buildings for energy efficiency. Instead, the goal is to build upon existing and established research on data infrastructure, smart technology, climate research etc. showing that, while the efforts currently taken might be improving the efficiency in a building on-site, considerations that are impacting the energy consumption off site need to be taken into consideration.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Decarbonization strategies for North American urban landscapes:                                   &#13;
Evaluating pavements and vegetation across design typologies</title>
<link href="https://hdl.handle.net/1721.1/163686" rel="alternate"/>
<author>
<name>Ramirez Cuebas, Adriana</name>
</author>
<id>https://hdl.handle.net/1721.1/163686</id>
<updated>2025-11-18T06:27:50Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Decarbonization strategies for North American urban landscapes:                                   &#13;
Evaluating pavements and vegetation across design typologies
Ramirez Cuebas, Adriana
Urban landscapes are increasingly recognized as critical to climate mitigation, yet remain underrepresented in carbon accounting frameworks relative to buildings and infrastructure. This thesis advances landscape carbon assessment by introducing a typology-based Life Cycle Assessment (LCA) framework for landscape architecture. &#13;
The framework integrates anthropogenic emissions and natural carbon dynamics while addressing uncertainty. It proceeds through three layers of analysis: 1) developing landscape system and project categories for carbon footprint benchmarking, 2) benchmarking the performance of the proposed landscape systems and urban typologies; and 3) assessing the mitigation potential of decarbonization strategies across systems and project types.&#13;
Concrete pavers on reinforced concrete slabs and asphalt pavements (78 to 104 kgCO₂e/m²) are the most carbon intensive in the production-to-construction stage. Turfgrass and shrubs show wide variability, functioning as sources or sinks depending on species mix, maintenance, and flux magnitudes, underscoring the need for species-specific, ecologically dynamic modeling (-21 to 42 kgCO₂e/m² and -35 to 258 kgCO₂e/m²). Canopy systems act as consistent carbon sinks (-611 to -388 kgCO₂e/m² over 50 years) despite significant emissions from transportation and structural soil.&#13;
Landscape systems were used to benchmark four urban typologies—streetscapes, plazas, courtyards, and urban parks. Their 50-year carbon footprints range from –80 to 21 kgCO₂e/m² in urban parks, –13 to 63 in courtyards, 22 to 79 in plazas, and 3 to 80 in streetscapes. Applying decarbonization strategies makes all typologies achieve net carbon sink status at the high bound. Urban parks achieve neutrality immediately post-construction, courtyards in 13 years, plazas in 26 years, and streetscapes by year 33. At higher emission estimates, urban parks and courtyards deepen carbon sink performance, plazas cross into net sink territory, and streetscapes approach neutrality. The detailed findings highlight the influence of planting density, maintenance regimes, and land cover composition.&#13;
By structuring assessment around land covers and urban typologies, this thesis delivers a transferable carbon accounting framework aligned with design practice, offering actionable insights for embedding climate accountability into landscape architecture and public policy.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Simulation and Design of Quantum Processors for Low‑Overhead Quantum Error Correction</title>
<link href="https://hdl.handle.net/1721.1/163685" rel="alternate"/>
<author>
<name>Pahl, David</name>
</author>
<id>https://hdl.handle.net/1721.1/163685</id>
<updated>2025-11-18T06:27:47Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Simulation and Design of Quantum Processors for Low‑Overhead Quantum Error Correction
Pahl, David
This thesis investigates the simulation and design of the hardware architecture required for large‑scale quantum error correction (QEC). Specifically, we design microwave circuits for fast and high‑fidelity readout and devise a long‑range coupler (LRC) that spans five qubit lattice sites, suitable for low‑overhead quantum low‑density parity‑check (qLDPC) codes [1]. We present a prototypical nine‑qubit qLDPC code incorporating two long‑ range couplers and optimized readout circuits, achieving state‑of‑the‑art readout fidelities of up to 99.63% in 56 ns and demonstrating strong, well‑targeted couplings mediated by the LRC. Our simulations employ an efficient microwave abstraction based on ABCD transfer matrices, modeling complete qubit devices as networks of circuit elements. We use this formalism to develop a closed‑loop optimization algorithm that determines optimal readout parameters in seconds. The ABCD framework also accurately captures the multi‑mode behavior of the LRC, offering a valuable tool for developing large‑scale, low‑ overhead QEC devices.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cost-Based Optimization for Semantic Operator Systems</title>
<link href="https://hdl.handle.net/1721.1/163684" rel="alternate"/>
<author>
<name>Russo, Matthew D.</name>
</author>
<id>https://hdl.handle.net/1721.1/163684</id>
<updated>2025-11-18T06:27:25Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Cost-Based Optimization for Semantic Operator Systems
Russo, Matthew D.
Recently, AI developers have turned to modular AI systems in order to achieve state-ofthe-art performance on challenging benchmarks and industry problems. New programming frameworks have enabled developers to build these systems by composing them out of semantic operators—i.e., LLM-powered maps, filters, joins, aggregations, etc.—inspired by relational operators from data management systems. While these systems of semantic operators can achieve strong performance on benchmarks, they can be difficult to optimize. For example, an optimizer may need to determine which model, prompting strategy, and retrieval mechanism to use for each operator. Existing optimizers are limited in the number of optimizations they can apply, and most (if not all) cannot optimize system quality, cost, or latency subject to constraint(s) on the other dimensions. In this thesis, we build an extensible, cost-based optimizer called Abacus, which searches for the best implementation of a semantic operator system given a (possibly constrained) optimization objective. The optimizer estimates operator performance by leveraging a minimal set of training examples and, if available, prior beliefs about operator performance. We evaluate the optimizer on a range of workloads including biomedical multi-label classification (BioDEX), information extraction from legal contracts (CUAD), and multi-modal question answering (MMQA). We demonstrate that systems optimized by our work achieve 18.7%-39.2% better quality and up to 23.6x lower cost and 4.2x lower latency than the next best system.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Efficient Learning and Computation of Linear Correlated Equilibrium in General Convex Games</title>
<link href="https://hdl.handle.net/1721.1/163683" rel="alternate"/>
<author>
<name>Pipis, Charilaos</name>
</author>
<id>https://hdl.handle.net/1721.1/163683</id>
<updated>2025-11-18T06:27:36Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Efficient Learning and Computation of Linear Correlated Equilibrium in General Convex Games
Pipis, Charilaos
We propose efficient no-regret learning dynamics and ellipsoid-based methods for computing linear correlated equilibria—a relaxation of correlated equilibria and a strengthening of coarse correlated equilibria—in general convex games. These are games where the number of pure strategies is potentially exponential in the natural representation of the game, such as extensive-form games. Our work identifies linear correlated equilibria as the tightest known notion of equilibrium that is computable in polynomial time and is efficiently learnable for general convex games. Our results are enabled by a generalization of the seminal framework of Gordon et al. [2008] for Φ-regret minimization, providing extensions to this framework that can be used even when the set of deviations Φ is intractable to separate/optimize over. Our polynomial-time algorithms are similarly enabled by extending the Ellipsoid-Against-Hope approach of Papadimitriou and Roughgarden [2008] and its generalization to games of non-polynomial type proposed by Farina and Pipis [2024a]. We provide an extension to these approaches when we do not have access to the separation oracles required by these works for the dual player. This work will appear in STOC 2025, [Daskalakis et al., 2025].
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Explaining Black-Box Classifiers by Implicitly Learning&#13;
Decision Trees</title>
<link href="https://hdl.handle.net/1721.1/163682" rel="alternate"/>
<author>
<name>Lange, Jane</name>
</author>
<id>https://hdl.handle.net/1721.1/163682</id>
<updated>2025-11-18T06:27:01Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Explaining Black-Box Classifiers by Implicitly Learning&#13;
Decision Trees
Lange, Jane
We present algorithms for finding two types of objects that explain the classification of a black-box model f : {±1}^d → {±1} on an instance x ∈ {±1}^d . The first is a certificate: a small set of x’s features that in conjunction essentially determines f(x). The second is a counterfactual: a nearest instance x′ for which f(x′) ≠ f(x). We obtain both algorithms via a connection to the problem of implicitly learning decision trees. The implicit nature of this learning task allows for efficient algorithms even when the complexity of f necessitates an intractably large surrogate decision tree. We solve the implicit learning task by bringing together techniques from learning theory, local computation algorithms, and complexity theory. Our approach of “explaining by implicit learning” shares elements of two previously disparate methods for post-hoc explanations, global and local explanations, and we make the case that it enjoys advantages of both. Our certification algorithm runs in time poly(d, C(f)) and outputs a certificate of size poly(C(f)), where C(f) is the “average certificate complexity" of f. Our counterfactual algorithm runs in time S(f)^[O(∆f (x))] ·log d, where S(f) is the sensitivity of f (a discrete analogue of the Lipschitz constant) and ∆f (x) is the distance from x to its nearest counterfactual. We further prove a lower bound of S(f)^[Ω(∆f (x))] + Ω(log d) for finding counterfactuals, thereby showing that the guarantees of our algorithm are essentially optimal.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analog On-chip Training and Inference with Non-volatile&#13;
Memory Devices</title>
<link href="https://hdl.handle.net/1721.1/163681" rel="alternate"/>
<author>
<name>Lee, Jungsoo</name>
</author>
<id>https://hdl.handle.net/1721.1/163681</id>
<updated>2025-11-18T06:27:27Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Analog On-chip Training and Inference with Non-volatile&#13;
Memory Devices
Lee, Jungsoo
As the demand for computation in neural networks continues to rise, conventional computing resources are increasingly constrained by their limited energy efficiency. One promising solution to this challenge is analog in-memory computing (AIMC), which enables efficient matrix-vector multiplications by encoding synaptic weights into the conductance of nonvolatile memory devices. These devices are structured into crossbar arrays. To explore the potential of non-volatile memory devices in AIMC, investigations involve simulating crossbar array operations using IBM’s AIHWKIT. With this tool, I investigate the implementation of various analog computing algorithms, including TikiTaka. AIMC is evaluated for simple MNIST classification tasks and more complex deep learning models, Long Short-Term Memory (LSTM) networks. I demonstrate that devices can be categorized based on their asymmetry and non-linear weight modulation behavior. Performance improvements through the Tikitaka algorithm are observed only when the device provides a sufficient converge-dragging force; otherwise, the algorithm may even degrade performance. I also investigate how pulse-to-pulse noise and device-to-device variability affect system performance, as well as how different peripheral circuit configurations influence the overall behavior. Finally, I propose an Analog Low-Rank Adapter (Analog LoRA) by applying analog computing to the fine-tuning of large language models. I explore the necessary conditions for Analog LoRA to achieve performance comparable to its digital counterpart. Based on these findings, I present design guidelines for effectively applying analog computing to various machine learning tasks on edge devices.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>CMOS-Compatible Wafer-Scale Synthesis and Rapid Characterization of Two-Dimensional Transition Metal Dichalcogenides</title>
<link href="https://hdl.handle.net/1721.1/163680" rel="alternate"/>
<author>
<name>Jiao, Yixuan</name>
</author>
<id>https://hdl.handle.net/1721.1/163680</id>
<updated>2025-11-18T06:26:54Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">CMOS-Compatible Wafer-Scale Synthesis and Rapid Characterization of Two-Dimensional Transition Metal Dichalcogenides
Jiao, Yixuan
Two-dimensional transition metal dichalcogenides (TMDs) such as monolayer MoS₂ offer great promise for next generation nanoelectronics due to their atomic thickness, tunable bandgaps, and excellent electrostatic control. However, industrial semiconductor manufacturing demands CMOS-compatible, wafer-scale growth and conventional CVD methods often exceed thermal budgets and introduce contaminants, while achieving uniform, defect-free monolayers remain difficult. This thesis presents in-depth discussion on low-temperature MOCVD system design and optimization methodology for uniform monolayer TMD synthesis. We investigate the effect of alkali halide promoters (e.g. NaCl) and novel alkali-free promoters (e.g. NH4Cl and crystal violet) on synthesis of monolayer MoS₂. By optimizing the NaCl-promoted route, we achieve coalesced monolayer MoS₂ films with enlarged grain domains and demonstrate field-effect transistors with improved mobility. In parallel, we develop a CMOS-compatible crystal violet seeding method that avoids alkali metal contaminants and yields uniform monolayer coverage. To support process development, a rapid characterization pipeline was introduced: optical/SEM imaging combined with machine learning to quickly map thickness, grain size, and infer electronic quality across the wafer. These contributions collectively advance the integration of 2D TMD materials into CMOS fabrication, enabling monolithic 3D integration in future electronics.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Automating the Search for Artificial Life with Foundation&#13;
Models</title>
<link href="https://hdl.handle.net/1721.1/163679" rel="alternate"/>
<author>
<name>Kumar, Akarsh</name>
</author>
<id>https://hdl.handle.net/1721.1/163679</id>
<updated>2025-11-18T06:27:21Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Automating the Search for Artificial Life with Foundation&#13;
Models
Kumar, Akarsh
With the recent Nobel Prize awarded for radical advances in protein discovery, foundation models (FMs) for exploring large combinatorial spaces promise to revolutionize many scientific fields. Artificial Life (ALife) has not yet integrated FMs, thus presenting a major opportunity for the field to alleviate the historical burden of relying chiefly on manual design and trial-anderror to discover the configurations of lifelike simulations. This paper presents, for the first time, a successful realization of this opportunity using vision-language FMs. The proposed approach, called Automated Search for Artificial Life (ASAL), (1) finds simulations that produce target phenomena, (2) discovers simulations that generate temporally open-ended novelty, and (3) illuminates an entire space of interestingly diverse simulations. Because of the generality of FMs, ASAL works effectively across a diverse range of ALife substrates including Boids, Particle Life, Game of Life, Lenia, and Neural Cellular Automata. A major result highlighting the potential of this technique is the discovery of previously unseen Lenia and Boids lifeforms, as well as cellular automata that are open-ended like Conway’s Game of Life. Additionally, the use of FMs allows for the quantification of previously qualitative phenomena in a human-aligned way. This new paradigm promises to accelerate ALife research beyond what is possible through human ingenuity alone.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Uncertainty-aware Joint Physical Tracking and Prediction</title>
<link href="https://hdl.handle.net/1721.1/163678" rel="alternate"/>
<author>
<name>Dasgupta, Arijit</name>
</author>
<id>https://hdl.handle.net/1721.1/163678</id>
<updated>2025-11-18T06:26:46Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Uncertainty-aware Joint Physical Tracking and Prediction
Dasgupta, Arijit
Humans possess a remarkable capacity to track and predict the motion of objects even when visual information is temporarily absent. This thesis investigates how missing sensory evidence—such as during occlusion—alters current and future beliefs about object motion, and introduces an uncertainty-aware framework to model this process. A behavioral experiment was conducted in which participants continuously predicted the future destination of a ball moving in 2.5D environments with occlusion. Results demonstrate that participants dynamically updated their predictions throughout occlusion, exhibiting adaptive belief revision and physically grounded reasoning. To model this behavior, a structured Bayesian modeling and inference approach for joint tracking and prediction was developed that integrates perception, state estimation, and future prediction in a unified process. The approach, implemented via a Sequential Monte Carlo algorithm embedded within a GPU-accelerated and parallel probabilistic programming system, maintains time-varying beliefs over both present and future object states, conditioned on observed images. These belief states are explicitly represented in symbolic form, enabling interpretable, frame-by-frame introspection of uncertainty and prediction over time. When compared against human responses, the model closely matched the temporal evolution of time-aligned decisions and outperformed plausible alternative hypotheses that failed to reason during occlusion. These findings affirm that the absence of changing visual evidence does not engender a void in physical reasoning, but is evidence in itself—processed and revised through structured, probabilistic inference. By integrating probabilistic programming with human behavioral data through structured Bayesian modeling and inference, this thesis advances a computational account of intuitive physical reasoning and provides a foundation for building interpretable, uncertainty-aware AI systems that mirror human-like physical intelligence.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Toward an Age-Ready Suburbia</title>
<link href="https://hdl.handle.net/1721.1/163677" rel="alternate"/>
<author>
<name>Du, Minghao</name>
</author>
<author>
<name>Zhuang, Kaicheng</name>
</author>
<id>https://hdl.handle.net/1721.1/163677</id>
<updated>2025-11-18T06:27:19Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Toward an Age-Ready Suburbia
Du, Minghao; Zhuang, Kaicheng
As America’s population ages, suburban neighborhoods face urgent challenges. Originally designed for young, car-dependent families, the suburban landscape today often presents barriers to aging in place, including poor walkability, inaccessible housing, and limited access to essential services and care. This thesis investigates these challenges and proposes a strategy for reimagining suburban environments through demographic analysis, spatial mapping, persona-driven research, architectural prototyping, and community planning. It traces the historical evolution of suburbia, critically evaluates existing senior housing typologies, and advances new frameworks for retrofitting residential neighborhoods to better support aging populations. Focusing on Sacramento, California, the research identifies high-priority areas where aging, affordability challenges, and mobility barriers intersect. Grounded by a pilot care home project, the study demonstrates how modest interventions, such as retrofitting single-family homes into small-scale residential care environments, can enhance both livability and care access. The first phase of the pilot project has been constructed, offering a demonstration of the proposed model’s feasibility. A phased development and financial strategy are also outlined to ensure broader applicability. While rooted in Sacramento, the thesis offers a framework relevant to many suburban contexts across the United States, particularly naturally occurring retirement communities (NORCs) where older adults are aging in place. Rather than creating isolated senior enclaves, the work promotes a distributed, community-integrated model that strengthens neighborhood resilience and supports intergenerational living. By combining design innovation with policy awareness and development feasibility, the thesis presents a scalable and adaptable approach to reshaping suburbs for an aging society.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Calibration and Control of Superconducting Qubits for Low‑Overhead Quantum Error Correction</title>
<link href="https://hdl.handle.net/1721.1/163676" rel="alternate"/>
<author>
<name>Pahl, Lukas</name>
</author>
<id>https://hdl.handle.net/1721.1/163676</id>
<updated>2025-11-18T06:27:41Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Calibration and Control of Superconducting Qubits for Low‑Overhead Quantum Error Correction
Pahl, Lukas
The ability to coherently and reliably manipulate quantum information marks a fundamental technological leap—realizable through a universal, fault‑tolerant quantum computer. Achieving this goal requires progress across all layers of the quantum computing stack, from physical qubits to theoretical algorithms. In this work, we address multiple layers of this stack. We develop a software architecture for scalable device calibration using modular calibration graphs. We introduce real‑time frequency stabilization techniques, demonstrating improved single‑qubit gate fidelities and progress toward multiqubit feedback. Finally, we explore how quantum error correction overhead can be reduced using low‑density parity‑check codes. We present logical protocols for a non‑local nine‑qubit code, which significantly outperforms comparable surface code implementations in both qubit efficiency and computational capability. These results represent practical steps toward overcoming key challenges in fault‑tolerant quantum computing.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>ModelDiff: A Framework for Comparing Learning Algorithms</title>
<link href="https://hdl.handle.net/1721.1/163675" rel="alternate"/>
<author>
<name>Shah, Harshay</name>
</author>
<id>https://hdl.handle.net/1721.1/163675</id>
<updated>2025-11-18T06:27:15Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">ModelDiff: A Framework for Comparing Learning Algorithms
Shah, Harshay
We study the problem of (learning) algorithm comparison, where the goal is to find differences between models trained with two different learning algorithms. We begin by formalizing this goal as one of finding distinguishing feature transformations, i.e., input transformations that change the predictions of models trained with one learning algorithm but not the other. We then present ModelDiff, a method that leverages the datamodels framework (Ilyas et al., 2022) to compare learning algorithms based on how they use their training data. We demonstrate ModelDiff through three case studies, comparing models trained with/without data augmentation, with/without pre-training, and with different SGD hyperparameters. Our code is available at https://github.com/MadryLab/modeldiff.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Prediction of Large Events in Directed Sandpiles</title>
<link href="https://hdl.handle.net/1721.1/163674" rel="alternate"/>
<author>
<name>Shah, Dhruv</name>
</author>
<id>https://hdl.handle.net/1721.1/163674</id>
<updated>2025-11-18T06:33:43Z</updated>
<published>2025-11-15T00:00:00Z</published>
<summary type="text">Prediction of Large Events in Directed Sandpiles
Shah, Dhruv
The degree of predictability of large avalanche events in the directed sandpile model is studied. This degree is defined in terms of how successfully a strategy can predict such events, as compared to a random guess. A waiting time based prediction strategy which exploits the local anticorrelation of large events is discussed. With this strategy we show analytically and numerically that large events are predictable, and that this predictability persists in the thermodynamic limit. We introduce another strategy which predicts large avalanches in the future based on the present excess density in the sandpile. We obtain the exact conditional probabilities for large events given an excess density, and use this to determine the exact form of the ROC predictability curves. We show that for this strategy, the model is predictable only for finite lattice sizes, and unpredictable in the thermodynamic limit. This behaviour is to be contrasted with previously established numerical studies carried out for Manna sandpiles.
</summary>
<dc:date>2025-11-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>What are the most informative data points for predicting extreme events?</title>
<link href="https://hdl.handle.net/1721.1/163673" rel="alternate"/>
<author>
<name>Champenois, Bianca</name>
</author>
<author>
<name>Sapsis, Themistoklis P.</name>
</author>
<id>https://hdl.handle.net/1721.1/163673</id>
<updated>2025-11-18T06:33:26Z</updated>
<published>2025-09-22T00:00:00Z</published>
<summary type="text">What are the most informative data points for predicting extreme events?
Champenois, Bianca; Sapsis, Themistoklis P.
The growing availability of large datasets that describe complex dynamical systems, such as climate models and turbulence simulations, has made machine learning an increasingly popular tool for modeling and analysis, but the inherent low representation of extreme events poses a major challenge for model accuracy in the tails of the distribution. This raises a fundamental question: Given a large dataset, which data points should we use to train machine learning models that effectively learn extremes? To address this question, we study a likelihood-weighted active data selection framework that identifies the most informative data points for model training. The framework improves predictions of extreme values of a target observable, scales to high-dimensional systems, and is model-agnostic. Unlike traditional active learning, which assumes the ability to query new data, our method is designed for problems where the dataset is fixed but vast, focusing on selection rather than acquisition. Points are scored using a likelihood-weighted uncertainty sampling criterion that prioritizes samples expected to reduce model uncertainty and improve predictions in the tails of the distribution for systems with non-Gaussian statistics. When applied to a machine learning climate model with input dimensionality on the order of tens of thousands, we find that the likelihood-weighted active data selection algorithm most accurately captures the statistics of extreme events using only a fraction of the original dataset. We also introduce analysis techniques to further interpret the optimally selected points. Looking ahead, the approach can serve as a compression algorithm that preserves information associated with extreme events in vast datasets.
</summary>
<dc:date>2025-09-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Coclique level structure for stochastic chemical reaction networks</title>
<link href="https://hdl.handle.net/1721.1/163672" rel="alternate"/>
<author>
<name>Bruno, Simone</name>
</author>
<author>
<name>Fu, Yi</name>
</author>
<author>
<name>Campos, Felipe A.</name>
</author>
<author>
<name>Del Vecchio, Domitilla</name>
</author>
<author>
<name>Williams, Ruth J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163672</id>
<updated>2025-11-18T06:33:51Z</updated>
<published>2025-11-10T00:00:00Z</published>
<summary type="text">Coclique level structure for stochastic chemical reaction networks
Bruno, Simone; Fu, Yi; Campos, Felipe A.; Del Vecchio, Domitilla; Williams, Ruth J.
Continuous time Markov chains are commonly used as models for the stochastic behavior of chemical reaction networks. More precisely, these Stochastic Chemical Reaction Networks (SCRNs) are frequently used to gain a mechanistic understanding of how chemical reaction rate parameters impact the stochastic behavior of these systems. One property of interest is mean first passage times (MFPTs) between states. However, deriving explicit formulas for MFPTs can be highly complex. In order to address this problem, we first introduce the concept of $$coclique\, level\, structure$$ and develop theorems to determine whether certain SCRNs have this feature by studying associated graphs. Additionally, we develop an algorithm to identify, under specific assumptions, all possible coclique level structures associated with a given SCRN. Finally, we demonstrate how the presence of such a structure in a SCRN allows us to derive closed form formulas for both upper and lower bounds for the MFPTs. Our methods can be applied to SCRNs taking values in a generic finite state space and can also be applied to models with non-mass-action kinetics. We illustrate our results with examples from the biological areas of epigenetics, neurobiology and ecology.
</summary>
<dc:date>2025-11-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Psyche Light Elements Investigation</title>
<link href="https://hdl.handle.net/1721.1/163671" rel="alternate"/>
<author>
<name>Prettyman, Thomas H.</name>
</author>
<author>
<name>Mittlefehldt, David W.</name>
</author>
<author>
<name>Asphaug, Erik I.</name>
</author>
<author>
<name>Binzel, Richard P.</name>
</author>
<author>
<name>Courville, Samuel W.</name>
</author>
<author>
<name>Elkins-Tanton, Linda T.</name>
</author>
<author>
<name>Lawrence, David J.</name>
</author>
<author>
<name>Marchi, Simone</name>
</author>
<author>
<name>Merayo, José M. G.</name>
</author>
<author>
<name>McCoy, Timothy J.</name>
</author>
<author>
<name>Weiss, Benjamin P.</name>
</author>
<id>https://hdl.handle.net/1721.1/163671</id>
<updated>2025-11-18T06:33:40Z</updated>
<published>2025-11-11T00:00:00Z</published>
<summary type="text">The Psyche Light Elements Investigation
Prettyman, Thomas H.; Mittlefehldt, David W.; Asphaug, Erik I.; Binzel, Richard P.; Courville, Samuel W.; Elkins-Tanton, Linda T.; Lawrence, David J.; Marchi, Simone; Merayo, José M. G.; McCoy, Timothy J.; Weiss, Benjamin P.
Light elements, such as C, S, Si, O, C, and H, are thought to be present in Earth’s liquid-Fe outer core. These elements lower melting temperatures, thereby allowing the core to remain in liquid state at high pressure and influencing magnetic and geodynamic processes. However, the identity and abundance of the light elements in the cores of terrestrial planets and how they were delivered to these cores is not well known. The NASA Psyche mission will travel to and explore (16) Psyche, which may be the metal-rich core of a differentiated planetesimal exposed by collisional stripping. If so, the Psyche mission could provide a direct assessment of the light element content of an asteroidal core, allowing comparisons to the inferred composition of planetary cores and the parent bodies of the magmatic iron group meteorites. In particular, Earth’s high-pressure core formed gradually (over ∼100 Myr), in a multistage process, under increasingly oxidizing conditions, whereas the cores of planetesimals formed quickly (within 10 Myr) at low pressure, likely in chemical equilibrium with their mantles. The trace element systematics and mineral composition of magmatic iron meteorites indicate the presence of C, P, and S in planetesimal cores prior to solidification. Such elements would have played a role in core dynamics, including dynamo generation. Their low solubility combined with the immiscibility of their mineral precipitates would have resulted in their separation from Fe upon crystallization and their eruption onto the surface of a stripped core (via ferrovolcanism). The Psyche spacecraft will detect their elemental, mineral, and magnetic signatures with the payload instruments, which include a Gamma Ray and Neutron Spectrometer, a Multispectral Imager, and a Magnetometer. Additional constraints on interior composition and processes influenced by light elements will be provided by Psyche’s gravity and geomorphology investigations. We provide a brief introduction to the topic of light elements along with prospects for (16) Psyche. While we emphasize core formation processes, we also consider other possibilities for the origin and evolution of this metal-rich body.
</summary>
<dc:date>2025-11-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>A double exponential chirp waveform for noisy rheology</title>
<link href="https://hdl.handle.net/1721.1/163670" rel="alternate"/>
<author>
<name>Waeterloos, Jarno L.</name>
</author>
<author>
<name>McKinley, Gareth H.</name>
</author>
<author>
<name>Clasen, Christian</name>
</author>
<id>https://hdl.handle.net/1721.1/163670</id>
<updated>2025-11-18T06:33:47Z</updated>
<published>2025-09-23T00:00:00Z</published>
<summary type="text">A double exponential chirp waveform for noisy rheology
Waeterloos, Jarno L.; McKinley, Gareth H.; Clasen, Christian
In the search for faster rheometrical measurements techniques for fast time-evolving systems, optimally windowed chirps (OWCh) have recently been proposed for the determination of the complex modulus. However, such chirps are prone to artefacts at high frequencies due to fact that the input power is distributed over a range of frequencies leading to reduced signal-to-noise ratios in noisy conditions. The Tukey window which modulates the amplitude of the excitation disturbance and which is required to avoid spectral leakage directly reduces the signal-to-noise ratio at the edges of the signal leading to a divergence of the measured moduli at high frequencies. A new double exponential chirp (DEC) signal is proposed to overcome these limitations. Its capabilities are demonstrated with orthogonal superposition rheometry as an example of a demanding high-noise environment. The S-shaped time-frequency history of the new chirp signal redistributes the input power over the frequency spectrum. Numerical simulations using the Maxwell and Giesekus models, along with orthogonal superposition measurements on wormlike micellar fluids, demonstrate the effectiveness of the DEC waveform. Parameter optimization with the Giesekus model identifies the ideal input configurations for achieving a maximum signal-to-noise ratio during rheological measurements.
</summary>
<dc:date>2025-09-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Generative BigSMILES: an extension for polymer informatics, computer simulations &amp;amp; ML/AI</title>
<link href="https://hdl.handle.net/1721.1/163669" rel="alternate"/>
<author>
<name>Schneider, Ludwig</name>
</author>
<author>
<name>Walsh, Dylan</name>
</author>
<author>
<name>Olsen, Bradley</name>
</author>
<author>
<name>de Pablo, Juan</name>
</author>
<id>https://hdl.handle.net/1721.1/163669</id>
<updated>2026-04-14T03:28:35Z</updated>
<published>2023-11-17T00:00:00Z</published>
<summary type="text">Generative BigSMILES: an extension for polymer informatics, computer simulations &amp;amp; ML/AI
Schneider, Ludwig; Walsh, Dylan; Olsen, Bradley; de Pablo, Juan
The BigSMILES notation, a concise tool for polymer ensemble representation, is augmented here by introducing an enhanced version called generative BigSMILES. G-BigSMILES is designed for generative workflows, and is complemented by tailored software tools for ease of use. This extension integrates additional data, including reactivity ratios (or connection probabilities among repeat units), molecular weight distributions, and ensemble size. An algorithm, interpretable as a generative graph is devised that utilizes these data, enabling molecule generation from defined polymer ensembles. Consequently, the G-BigSMILES notation allows for efficient specification of complex molecular ensembles via a streamlined line notation, thereby providing a foundational tool for automated polymeric materials design. In addition, the graph interpretation of the G-BigSMILES notation sets the stage for robust machine learning methods capable of encapsulating intricate polymeric ensembles. The combination of G-BigSMILES with advanced machine learning techniques will facilitate straightforward property determination and in silico polymeric material synthesis automation. This integration has the potential to significantly accelerate materials design processes and advance the field of polymer science.
</summary>
<dc:date>2023-11-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Calculating Pairwise Similarity of Polymer Ensembles via Earth Mover’s Distance</title>
<link href="https://hdl.handle.net/1721.1/163668" rel="alternate"/>
<author>
<name>Shi, Jiale</name>
</author>
<author>
<name>Walsh, Dylan</name>
</author>
<author>
<name>Zou, Weizhong</name>
</author>
<author>
<name>Rebello, Nathan J</name>
</author>
<author>
<name>Deagen, Michael E</name>
</author>
<author>
<name>Fransen, Katharina A</name>
</author>
<author>
<name>Gao, Xian</name>
</author>
<author>
<name>Olsen, Bradley D</name>
</author>
<author>
<name>Audus, Debra J</name>
</author>
<id>https://hdl.handle.net/1721.1/163668</id>
<updated>2026-04-14T03:28:40Z</updated>
<published>2024-02-14T00:00:00Z</published>
<summary type="text">Calculating Pairwise Similarity of Polymer Ensembles via Earth Mover’s Distance
Shi, Jiale; Walsh, Dylan; Zou, Weizhong; Rebello, Nathan J; Deagen, Michael E; Fransen, Katharina A; Gao, Xian; Olsen, Bradley D; Audus, Debra J
Synthetic polymers, in contrast to small molecules and deterministic biomacromolecules, are typically ensembles composed of polymer chains with varying numbers, lengths, sequences, chemistry, and topologies. While numerous approaches exist for measuring pairwise similarity among small molecules and sequence-defined biomacromolecules, accurately determining the pairwise similarity between two polymer ensembles remains challenging. This work proposes the earth mover's distance (EMD) metric to calculate the pairwise similarity score between two polymer ensembles. EMD offers a greater resolution of chemical differences between polymer ensembles than the averaging method and provides a quantitative numeric value representing the pairwise similarity between polymer ensembles in alignment with chemical intuition. The EMD approach for assessing polymer similarity enhances the development of accurate chemical search algorithms within polymer databases and can improve machine learning techniques for polymer design, optimization, and property prediction.
</summary>
<dc:date>2024-02-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Engineered selective biotoxin‐binding hydrogels for toxin sequestration</title>
<link href="https://hdl.handle.net/1721.1/163667" rel="alternate"/>
<author>
<name>Morris, Melody A</name>
</author>
<author>
<name>Yang, Yun Jung</name>
</author>
<author>
<name>Mai, Danielle J</name>
</author>
<author>
<name>Olsen, Bradley D</name>
</author>
<id>https://hdl.handle.net/1721.1/163667</id>
<updated>2026-04-14T03:28:50Z</updated>
<published>2024-03-22T00:00:00Z</published>
<summary type="text">Engineered selective biotoxin‐binding hydrogels for toxin sequestration
Morris, Melody A; Yang, Yun Jung; Mai, Danielle J; Olsen, Bradley D
The development of synthetic selective membranes that separate materials of similar sizes, charges, and/or polarities remains a difficult challenge, and looking towards biology provides inspiration for new designs. In this work, a series of cholera toxin binding peptides (CTBPs) are identified, spanning a range of binding inhibitions, and integrated into chemically cross‐linked cholera toxin binding gels (CTBGs) via thiol‐Michael polycondensation reactions. All gels demonstrate rheological profiles consistent with elastic solids. The CTBGs are probed via small‐angle neutron scattering and exhibit a correlation length, &lt;jats:italic&gt;ξ&lt;/jats:italic&gt;, smaller than most proteins (1.3–2.5 nm). Thus, an effective entropic mesh is formed to block non‐targeted proteins. However, the CTBGs have a dynamic mesh size, Ξ, that is larger than cholera toxin (CT) to allow the transport of target proteins. The CTBGs with the highest binding inhibitions both show high selectivity and permeation of CT, rejecting all other tested proteins. In total, two new highly selective CTBGs are synthesized and validated for use in cholera toxin remediation. Together, this platform demonstrates the wide applicability of selectively‐diffusive materials for difficult separations.
</summary>
<dc:date>2024-03-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Accelerated small angle neutron scattering algorithms for polymeric materials</title>
<link href="https://hdl.handle.net/1721.1/163666" rel="alternate"/>
<author>
<name>Dai, Kexin</name>
</author>
<author>
<name>Olsen, Bradley D</name>
</author>
<id>https://hdl.handle.net/1721.1/163666</id>
<updated>2026-04-14T03:28:44Z</updated>
<published>2025-10-10T00:00:00Z</published>
<summary type="text">Accelerated small angle neutron scattering algorithms for polymeric materials
Dai, Kexin; Olsen, Bradley D
Small-angle neutron scattering (SANS) is an extremely powerful technique for characterizing a wide variety of soft, biological, magnetic, and quantum materials, but it is often throughput-limited. This work proposes an algorithm to accelerate small angle neutron scattering (SANS) experiments by estimating the minimum number of counts to perform parameter estimation and model differentiation tasks to a specified level of certainty. Three classes of model polymer materials were examined and analyzed, and time slices of SANS data were used to model a reduced number of counts. The scattering data with reduced numbers of counts were fitted to SANS model functions to perform parameter estimation and model differentiation tasks. For parameter estimation, estimators accurate to within 5–10% of the full count estimator can be produced with only 1–50% of the full counts depending upon the sample and parameter of interest. In order to project parameter uncertainties at lower number of counts prior to the completion of experiments, it is crucial to have a robust error quantification method that reflects the true uncertainty associated with each parameter. Uncertainties from Monte Carlo (MC) bootstrapping are shown to in general overestimate the error from fitting many experimental replicates. For most parameter estimation techniques, the weighted least squares estimator is unbiased; however, certain models yield biased estimators. To differentiate between models, both the Akaike information criterion (AIC) and Bayesian information criterion (BIC) can be used, and with either criterion, reduced numbers of counts can still identify the best model for our samples from a group of related candidate models for each material. The proposed algorithm can help SANS users optimize valuable beamtime and accelerate the use of SANS for structural characterization of libraries of materials while obtaining reasonable parameter estimation and model differentiation when scattering models are available.
</summary>
<dc:date>2025-10-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Comparative study of conventional and process intensification by reactive distillation designs for glycerol carbonate production from glycerol and diethyl carbonate</title>
<link href="https://hdl.handle.net/1721.1/163665" rel="alternate"/>
<author>
<name>Chalermthai, Bushra</name>
</author>
<author>
<name>Sriharuethai, Chayanin</name>
</author>
<author>
<name>Olsen, Bradley D</name>
</author>
<author>
<name>Ngaosuwan, Kanokwan</name>
</author>
<author>
<name>Soottitantawat, Apinan</name>
</author>
<author>
<name>Assabumrungrat, Suttichai</name>
</author>
<author>
<name>Charoensuppanimit, Pongtorn</name>
</author>
<id>https://hdl.handle.net/1721.1/163665</id>
<updated>2026-04-14T03:28:38Z</updated>
<published>2025-01-12T00:00:00Z</published>
<summary type="text">Comparative study of conventional and process intensification by reactive distillation designs for glycerol carbonate production from glycerol and diethyl carbonate
Chalermthai, Bushra; Sriharuethai, Chayanin; Olsen, Bradley D; Ngaosuwan, Kanokwan; Soottitantawat, Apinan; Assabumrungrat, Suttichai; Charoensuppanimit, Pongtorn
Glycerol carbonate (GC) can be produced from glycerol (GL), a low-value byproduct in the biodiesel industry. In this work, continuous processes of GC production via transesterification from crude GL and diethyl carbonate (DEC) were developed using Aspen Plus. Two cases were considered, and their process performances were compared. In Case I, a conventional design consisted of a continuously stirred tank reactor for the reaction section and a distillation column for the purification section. In Case II, a process intensification design consisted of a reactive distillation column that could accommodate both reaction and purification within a single column. In both cases, the process optimizations were carried out by connecting the process models in Aspen Plus to MATLAB, using the Genetic Algorithm as the optimizer. The results showed that Case II was superior to Case I in terms of energy utilization, CO2 emissions, and economics with the specific energy consumption of 1.92 kWh/kg of diethyl carbonate, % internal rate of return of 274, payback period of 1.44 years, and CO2 emissions of 0.26 kg CO2/kg DEC. Lastly, the proposed process in Case II was compared with the GC production using dimethyl carbonate (DMC). It was found that using DEC was superior to DMC due to easier separation and glycidol avoidance.
</summary>
<dc:date>2025-01-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Designing for degradation: the importance of considering biotic and abiotic polymer degradation</title>
<link href="https://hdl.handle.net/1721.1/163664" rel="alternate"/>
<author>
<name>Tantawi, Omar</name>
</author>
<author>
<name>Joo, Wontae</name>
</author>
<author>
<name>Martin, Elijah E</name>
</author>
<author>
<name>Av-Ron, Sarah HM</name>
</author>
<author>
<name>Bannister, K'yal R</name>
</author>
<author>
<name>Prather, Kristala LJ</name>
</author>
<author>
<name>Olsen, Bradley D</name>
</author>
<author>
<name>Plata, Desiree L</name>
</author>
<id>https://hdl.handle.net/1721.1/163664</id>
<updated>2026-04-14T03:28:33Z</updated>
<published>2025-04-10T00:00:00Z</published>
<summary type="text">Designing for degradation: the importance of considering biotic and abiotic polymer degradation
Tantawi, Omar; Joo, Wontae; Martin, Elijah E; Av-Ron, Sarah HM; Bannister, K'yal R; Prather, Kristala LJ; Olsen, Bradley D; Plata, Desiree L
Considering the increasing global plastic demand, there is a critical need to gain insight into environmental processes that govern plastic degradation in order to inform novel design of sustainable polymers. Current biological degradation testing standards focus on formation of CO2 (i.e., mineralization) alone as a diagnostic, ultimately limiting identification of structure–degradation relationships in a timely fashion. This work developed a sequential abiotic (i.e., photodegradation and hydrolysis) and biotic degradation test and applied it to a suite of 18 polymers, including ten lab produced, novel polyhydroxyalkanoate polyesters, and eight commercially available, bio-based (i.e., polylactic acid and poly-3-hydroxybutyrate) and fossil-derived (i.e., polystyrene, polypropylene, low density polyethylene, poly(ethylene terephthalate) and tire rubber) polymers. Biomineralization alone following standard methods (i.e., ASTM 6691-17, ISO 23977-1 2020) underestimated polymer degradation up to two-fold over 28 days. Simulated sunlight enhanced the overall polymer degradation by mobilizing dissolved organic carbon (DOC). After photoirradiation, up to 100% of released dissolved organic carbon was bioavailable for marine microbes over 14 days. Photodegradation and hydrolysis could be explained by structural drivers in the commodity polymers, and the lab-synthesized polymers illustrated a limit to total degradation beyond which no enhancements in degradation were achieved. Taken together, this workflow allows for relatively fast experimental determination of environmentally relevant stimuli to help support eventual elucidation of structure–property relationships for enhanced a priori design of degradable polymers.
</summary>
<dc:date>2025-04-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Seroprevalence of COVID-19 neutralizing antibodies among multi-ethnic staff of an Asian primary healthcare institution: insights from point-of-care testing and implications for booster vaccination decisions</title>
<link href="https://hdl.handle.net/1721.1/163663" rel="alternate"/>
<author>
<name>Oka, Prawira</name>
</author>
<author>
<name>Jia, Huan</name>
</author>
<author>
<name>Kongsuphol, Patthara</name>
</author>
<author>
<name>Ng, Say Y.</name>
</author>
<author>
<name>Saravanan, Vivekanandan</name>
</author>
<author>
<name>Ng, Chirk J.</name>
</author>
<author>
<name>Moosa, Aminath S.</name>
</author>
<author>
<name>Xiong, Mengfei</name>
</author>
<author>
<name>Gun, Shih Y.</name>
</author>
<author>
<name>Tsang, Li P. M.</name>
</author>
<author>
<name>Lim, Jingyi</name>
</author>
<author>
<name>Vijaykumar, Kayshini</name>
</author>
<author>
<name>Ho, Cassandra X. Y.</name>
</author>
<author>
<name>Chua, Patrina W. L.</name>
</author>
<author>
<name>Ling, Sharon Y. H.</name>
</author>
<id>https://hdl.handle.net/1721.1/163663</id>
<updated>2026-04-14T03:27:18Z</updated>
<published>2025-10-30T00:00:00Z</published>
<summary type="text">Seroprevalence of COVID-19 neutralizing antibodies among multi-ethnic staff of an Asian primary healthcare institution: insights from point-of-care testing and implications for booster vaccination decisions
Oka, Prawira; Jia, Huan; Kongsuphol, Patthara; Ng, Say Y.; Saravanan, Vivekanandan; Ng, Chirk J.; Moosa, Aminath S.; Xiong, Mengfei; Gun, Shih Y.; Tsang, Li P. M.; Lim, Jingyi; Vijaykumar, Kayshini; Ho, Cassandra X. Y.; Chua, Patrina W. L.; Ling, Sharon Y. H.
Background COVID-19 vaccines have been crucial for establishing immunity; however, emerging data suggest vaccine efficacy is reduced within six months. Healthcare staff face an elevated COVID-19 risk and should make an informed decision to receive timely boosters to maintain their immunity. This study aims to determine the COVID-19 neutralizing antibody (nAb) seroprevalence among primary care staff and the impact of serological testing on their vaccination decision. Methods This cross-sectional study involved multidisciplinary primary healthcare professionals working in 10 public primary care clinics from December 2022 to July 2023. A questionnaire captured sociodemographic data, COVID-19 related history and attitudes toward serological testing. Their COVID-19 nAb levels were measured via point-of-care CoVIm™ Rapid SARS-CoV-2 nAb Test and laboratory cPass™ SARS-CoV-2 nAb Detection Kit. Results The study included 474 subjects, mostly female (88.8%), with a mean age of 40.6 years (SD = 12.3). All received at least two COVID-19 vaccinations, and 80.6% reported at least one infection. COVID-19 nAb seroprevalence was high (99.2%). Post-vaccination, 79.7% contracted COVID-19, with the median time to infection being 163 days. Most staff (93.9%) desired to know their COVID-19 immunity status through a finger pick test (77.0%) instead of venepuncture. Over two-thirds (68.1%) indicated the results would influence their booster vaccination decision. Conclusion The study revealed a high seroprevalence of COVID-19 nAb among the fully vaccinated participating staff. The necessity for timely boosters is underscored by 79.7% contracting COVID-19 post-vaccination. Most subjects were willing to undergo point-of-care testing, with results potentially influencing their decisions for booster vaccination.
</summary>
<dc:date>2025-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Problem structuring in urban science education: Why, what, and how</title>
<link href="https://hdl.handle.net/1721.1/163662" rel="alternate"/>
<author>
<name>Lai, Yuan</name>
</author>
<author>
<name>Lavi, Rea</name>
</author>
<id>https://hdl.handle.net/1721.1/163662</id>
<updated>2026-04-14T03:24:57Z</updated>
<published>2025-10-09T00:00:00Z</published>
<summary type="text">Problem structuring in urban science education: Why, what, and how
Lai, Yuan; Lavi, Rea
Urban science is an emerging and transdisciplinary field that attracts deep interest in planning degree programs from educational institutions worldwide. Urban science education emphasizes the science of cities and urban information technology by integrating design, engineering, system science, spatial science, behavioral and social science, decision science, and other disciplines. The increasing complexity of urban systems creates significant pedagogical challenges for urban science education, particularly in problem structuring, which is the process of structuring, or defining, (a) the scope of the problem, (b) the potential ways for addressing the problem, and (c) suitable criteria for judging solutions to the problem. In this article, we describe the theoretical foundations of problem structuring in relation to urban science education and explain why it is difficult to teach. In response to this pedagogical challenge, we propose DIMES (Describe, Inquire, Model, Extract, and State), a novel domain-agnostic method combining design thinking and systems thinking developed for problem structuring in any level of higher education. We describe how the DIMES method can be integrated into urban science curricula with relation to critical considerations for teaching urban science problem structuring, the fast-evolving smart city development, and the disruptive impact of generative artificial intelligence on urban science education. Finally, we provide our thoughts on potential future studies with DIMES in urban science learning settings.
</summary>
<dc:date>2025-10-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>The power of fragmented elites: the role of inadvertent robust action</title>
<link href="https://hdl.handle.net/1721.1/163661" rel="alternate"/>
<author>
<name>Mizruchi, Mark S.</name>
</author>
<author>
<name>Chu, Johan S. G.</name>
</author>
<id>https://hdl.handle.net/1721.1/163661</id>
<updated>2026-04-14T03:17:11Z</updated>
<published>2025-04-09T00:00:00Z</published>
<summary type="text">The power of fragmented elites: the role of inadvertent robust action
Mizruchi, Mark S.; Chu, Johan S. G.
It is broadly accepted among political scientists, political sociologists, and social movement theorists that a unified group will have a higher probability of success than a group that experiences internal divisions or fragmentation. Similarly, it has been assumed that in a society with a relatively unified elite, the elite will experience disproportionately higher benefits relative to the larger population. We take issue with this claim. In the mid-twentieth century, large American corporations exhibited a relatively high level of unity but the relative economic benefits accruing to the elite were at historic lows. In more recent years, American big business has become increasingly fragmented, yet the economic benefits that these elites have received have reached historic highs, and the average American’s standard of living has stagnated. Drawing on Padgett and Ansell, we introduce the concept of inadvertent robust action to explain how a relatively fragmented, disorganized elite can reap benefits that exceed those that its more unified counterparts experienced in an earlier era. We conclude with a discussion of the conditions under which our formulation can be expected to hold.
</summary>
<dc:date>2025-04-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Basic Elements of Strong Gravitational Lensing</title>
<link href="https://hdl.handle.net/1721.1/163660" rel="alternate"/>
<author>
<name>Schechter, Paul L.</name>
</author>
<author>
<name>Schnittman, Jeremy D.</name>
</author>
<id>https://hdl.handle.net/1721.1/163660</id>
<updated>2026-04-14T03:17:09Z</updated>
<published>2025-05-30T00:00:00Z</published>
<summary type="text">Basic Elements of Strong Gravitational Lensing
Schechter, Paul L.; Schnittman, Jeremy D.
Even when used to describe the same phenomenon, equations, graphics and words each give different perspectives and lead to complementary insights. The basic elements of strong gravitational lensing are introduced here favoring words and graphics over equations whenever possible. Fermat’s principle is the fundamental driver of strong lensing. Three “D’s” encapsulate the essential effects of lensing: Delay, Deflection and Distortion. Gravity and geometry both contribute to the delay of photons from a lensed source. Their interplay determines how the images of a source are deflected and how they are stretched or compressed. Caustics and critical curves are explained. Images of doubly, triply, quadruply and quintuply lensed sources are displayed. A table of symbols, their definitions and distinctions provides a summary of the basic elements of strong lensing.
</summary>
<dc:date>2025-05-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Search for dark matter production in association with a single top quark in proton-proton collisions at √s = 13 TeV</title>
<link href="https://hdl.handle.net/1721.1/163659" rel="alternate"/>
<author>
<name>Chekhovsky, V.</name>
</author>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Makarenko, V.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Benato, L.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>The CMS collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163659</id>
<updated>2026-04-14T03:24:56Z</updated>
<published>2025-09-17T00:00:00Z</published>
<summary type="text">Search for dark matter production in association with a single top quark in proton-proton collisions at √s = 13 TeV
Chekhovsky, V.; Hayrapetyan, A.; Makarenko, V.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Benato, L.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; The CMS collaboration
A search for the production of a single top quark in association with invisible particles is performed using proton-proton collision data collected with the CMS detector at the LHC at $$\sqrt{s}=13$$ TeV, corresponding to an integrated luminosity of 138 fb−1. In this search, a flavor-changing neutral current produces a single top quark or antiquark and an invisible state nonresonantly. The invisible state consists of a hypothetical spin-1 particle acting as a new mediator and decaying to two spin-1/2 dark matter candidates. The analysis searches for events in which the top quark or antiquark decays hadronically. No significant excess of events compatible with that signature is observed. Exclusion limits at 95% confidence level are placed on the masses of the spin-1 mediator and the dark matter candidates, and are compared to constraints from the dark matter relic density measurements. In a vector (axial-vector) coupling scenario, masses of the spin-1 mediator are excluded up to 1.85 (1.85) TeV with an expectation of 2.0 (2.0) TeV, whereas masses of the dark matter candidates are excluded up to 0.75 (0.55) TeV with an expectation of 0.85 (0.65) TeV.
</summary>
<dc:date>2025-09-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurement of the Ω c 0 and Ξ c 0 baryon lifetimes using hadronic b-baryon decays</title>
<link href="https://hdl.handle.net/1721.1/163658" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163658</id>
<updated>2026-04-14T03:25:09Z</updated>
<published>2025-09-18T00:00:00Z</published>
<summary type="text">Measurement of the Ω c 0 and Ξ c 0 baryon lifetimes using hadronic b-baryon decays
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.
The lifetimes of the Ω c 0 and Ξ c 0 baryons are measured using a pp collision dataset collected by the LHCb experiment, corresponding to an integrated luminosity of 9 fb−1. The charm baryons are produced in the fully reconstructed decay chains Ω b − → Ω c 0 → p K − K − π + π − and Ξ b − → Ξ c 0 → p K − K − π + π − . The measurement uses topologically and kinematically similar B− → D0(→ K−K+π−π+)π− decays for normalisation. The measured lifetimes are τ Ω c 0 = 276.3 ± 19.4 stat ± 1.8 syst ± 0.7 τ D 0 fs , τ Ξ c 0 = 149.2 ± 2.5 stat ± 0.9 syst ± 0.4 τ D 0 fs , where the first uncertainty is statistical, the second systematic and the third due to the uncertainty of the D0 lifetime. These results are consistent with previous measurements performed by the LHCb experiment.
</summary>
<dc:date>2025-09-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wormholes, branes and finite matrices in sine dilaton gravity</title>
<link href="https://hdl.handle.net/1721.1/163657" rel="alternate"/>
<author>
<name>Blommaert, Andreas</name>
</author>
<author>
<name>Levine, Adam</name>
</author>
<author>
<name>Mertens, Thomas G.</name>
</author>
<author>
<name>Papalini, Jacopo</name>
</author>
<author>
<name>Parmentier, Klaas</name>
</author>
<id>https://hdl.handle.net/1721.1/163657</id>
<updated>2026-04-14T03:25:10Z</updated>
<published>2025-09-16T00:00:00Z</published>
<summary type="text">Wormholes, branes and finite matrices in sine dilaton gravity
Blommaert, Andreas; Levine, Adam; Mertens, Thomas G.; Papalini, Jacopo; Parmentier, Klaas
We compute the double trumpet in sine dilaton gravity via WdW quantization. The wormhole size is discretized. The wormhole amplitude matches the spectral correlation of a finite-cut matrix integral, where matrices have large but finite dimensions. This strongly suggests an identification of the sine dilaton gravity theory with the q-deformed JT gravity matrix integral. At the very least, it captures all universal content of that matrix model. The disk decomposes into the physical (gauge invariant) solutions of the WdW equation, which are trumpets with discrete sizes. This decomposition modifies the usual no-boundary wavefunction to a normalizable one in sine dilaton gravity. We furthermore present an exact quantization of sine dilaton gravity with open and closed end of the world branes. These EOW branes correspond with FZZT branes for the two Liouville theories that make up sine dilaton gravity. The WdW equation implies redundancies in this space of branes, leaving a one parameter family of gauge invariant branes. One gauge choice corresponds with branes discussed by Okuyama in the context of DSSYK. Legendre transforming the EOW brane amplitude reproduces the trumpet. One could read our work as fleshing out the Hilbert space of closed universes in sine dilaton gravity.
</summary>
<dc:date>2025-09-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Precision e+e− hemisphere masses in the dijet region with power corrections</title>
<link href="https://hdl.handle.net/1721.1/163656" rel="alternate"/>
<author>
<name>Hoang, André H.</name>
</author>
<author>
<name>Mateu, Vicent</name>
</author>
<author>
<name>Schwartz, Matthew D.</name>
</author>
<author>
<name>Stewart, Iain W.</name>
</author>
<id>https://hdl.handle.net/1721.1/163656</id>
<updated>2026-04-14T03:25:11Z</updated>
<published>2025-09-10T00:00:00Z</published>
<summary type="text">Precision e+e− hemisphere masses in the dijet region with power corrections
Hoang, André H.; Mateu, Vicent; Schwartz, Matthew D.; Stewart, Iain W.
We derive high-precision results for the e+e− heavy jet mass (HJM) dσ/dρ and dihemisphere mass (DHM) d2σ/(ds1ds2) distributions, for s1 ~ s2, in the dijet region. New results include: i) the N3LL resummation for HJM of large logarithms lnn(ρ) at small ρ including the exact two-loop non-global hemisphere soft function, the 4-loop cusp anomalous dimension and the 3-loop hard and jet functions, ii) N3LL results for DHM with resummation of logarithms ln(s1,2/Q2) when there is no large separation between s1 and s2, iii) profile functions for HJM to give results simultaneously valid in the peak and tail regions, iv) a complete two-dimensional basis of non-perturbative functions which can be used for double differential observables, that are needed for both HJM and DHM in the peak region, and v) an implementation of renormalon subtractions for large-angle soft radiation to O α s 3 together with a resummation of the additional large ln(Qρ/ΛQCD) logarithms. Here Q is the e+e− center-of-mass energy. Our resummation results are combined with known fixed-order O α s 3 results and we discuss the convergence and remaining perturbative uncertainty in the cross section. We also prove that, at order 1/Q, the first moment of the HJM distribution involves an additional non-perturbative parameter compared to the power correction that shifts the tail of the spectrum (where 1 ≫ ρ ≫ ΛQCD/Q). This differs from thrust where a single non-perturbative parameter at order 1/Q describes both the first moment and the tail, and it disfavors models of power corrections employing a single non-perturbative parameter, such as the low-scale effective coupling model. In this paper we focus only on the dijet region, not the far-tail distribution for ρ ≳ 0.2 beyond which the trijet factorization and resummation become important.
</summary>
<dc:date>2025-09-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modular chaos, operator algebras, and the Berry phase</title>
<link href="https://hdl.handle.net/1721.1/163655" rel="alternate"/>
<author>
<name>de Boer, Jan</name>
</author>
<author>
<name>Najian, Bahman</name>
</author>
<author>
<name>van der Heijden, Jeremy</name>
</author>
<author>
<name>Zukowski, Claire</name>
</author>
<id>https://hdl.handle.net/1721.1/163655</id>
<updated>2026-04-14T03:24:54Z</updated>
<published>2025-09-10T00:00:00Z</published>
<summary type="text">Modular chaos, operator algebras, and the Berry phase
de Boer, Jan; Najian, Bahman; van der Heijden, Jeremy; Zukowski, Claire
Modular Berry transport associates a geometric phase to a zero mode ambiguity in a family of modular operators. In holographic settings, this phase was shown to encode nontrivial information about the emergent spacetime geometry. We reformulate modular Berry transport for arbitrary von Neumann algebras, including giving a precise definition of the zero mode projection in terms of a conditional expectation. For a certain class of state perturbations, we demonstrate that the modular Berry phase gives rise to an emergent symplectic form in the large N limit, extending related results in the context of subregion/subalgebra duality. We also show that the vanishing of the Berry curvature for modular scrambling modes signals the emergence of a local Poincaré algebra, which plays a key role in the quantum ergodic hierarchy. These results provide an intriguing relation between geometric phases, modular chaos and the local structure of spacetime.
</summary>
<dc:date>2025-09-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Builtsphere: A Broken Geological Paradigm</title>
<link href="https://hdl.handle.net/1721.1/163654" rel="alternate"/>
<author>
<name>Parreño Alonso, Cristina</name>
</author>
<id>https://hdl.handle.net/1721.1/163654</id>
<updated>2026-04-14T03:28:37Z</updated>
<published>2022-10-07T00:00:00Z</published>
<summary type="text">The Builtsphere: A Broken Geological Paradigm
Parreño Alonso, Cristina
This essay discusses the role that architecture plays as a new geological paradigm. Similar to the way geologist Peter K. Haff conceived the technosphere as “the proliferation of technology across the globe,” this essay defines the builtsphere as the proliferation of everything built across the planet and proposes both—the technosphere and the builtsphere—as subsystems of the anthroposphere. This essay illustrates this way of thinking architecture with a pedagogical experiment developed as a design studio that takes issue with the various ways in which the builtsphere has caused the breakdown of the Earth cycles.
</summary>
<dc:date>2022-10-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Brinkmanship Game: Bargaining Under the Mutual Risk of Escalation*</title>
<link href="https://hdl.handle.net/1721.1/163653" rel="alternate"/>
<author>
<name>Haun, Phil</name>
</author>
<author>
<name>O’Hara, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/163653</id>
<updated>2026-04-14T03:28:50Z</updated>
<published>2022-02-14T00:00:00Z</published>
<summary type="text">The Brinkmanship Game: Bargaining Under the Mutual Risk of Escalation*
Haun, Phil; O’Hara, Michael
This article describes a simple two-player game which illustrates basicconcepts of brinkmanship, to include calculations of probability andexpected outcomes, and risk-taking profiles. The game befits a single50-minute class period with introduction, gameplay, and discussion.The game can supplement the study of conflict from classic Cold Warcase studies of crisis bargaining, to arms control, or negotiating inter-national protocols for global climate change such as the ParisAgreement. The Brinkmanship Game was developed for the seventhweek of a 10-week graduate course called Game Theory andDecisionmaking: Exploring Strategic Situations. The course features aflipped classroom with class time devoted to experimentation, game-play, and discussion of readings and games; lectures are online. TheBrinkmanship Game would be appropriate for students in anyadvanced undergraduate or graduate level course in international rela-tions, security studies, negotiation, or game theory. The BrinkmanshipGame provides an active learning opportunity that can be valuable forencouraging students to come to their own understanding of con-cepts of mutual risk-taking. The authors have found the game to beeffective in the classroom and hope it may prove valuable to thosesearching for ways to motivate students and to help them learn.
</summary>
<dc:date>2022-02-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>From the square to the shopping mall: new social media, state surveillance, and the evolving geographies of urban protest</title>
<link href="https://hdl.handle.net/1721.1/163652" rel="alternate"/>
<author>
<name>Stokols, Andrew</name>
</author>
<id>https://hdl.handle.net/1721.1/163652</id>
<updated>2026-04-14T03:28:34Z</updated>
<published>2022-06-22T00:00:00Z</published>
<summary type="text">From the square to the shopping mall: new social media, state surveillance, and the evolving geographies of urban protest
Stokols, Andrew
Despite the rise of social media as a major factor in protests sincethe early 2010s, scholars have documented the continuedimportance of urban space and “place-based networks” for socialmovements. However, the 2019–2020 Hong Kong Anti-ELABprotests saw a shift from occupying symbolic public space to amore variegated use of urban spaces in the city. Combiningnetwork analysis of Telegram channels and georeferencing ofprotest events, this study shows how new digital media platformssuch as Telegram enabled a diverse array of protest activities, aswell as a shift from formal centrally located civic spaces to awider range of everyday spaces including malls, oﬃces, andindustrial buildings. This study also asks why this occurred,situating the shifting geography of protests as a response toseveral factors: new social media technologies, strengthening ofstate surveillance of physical and digital space, and collectivelearning from the perceived failures of past movements. Theimplications of these shifts for the future of urban socialmovements and the “public sphere” are discussed.
</summary>
<dc:date>2022-06-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interdependence of driver and pedestrian behavior in naturalistic roadway negotiations</title>
<link href="https://hdl.handle.net/1721.1/163651" rel="alternate"/>
<author>
<name>Noonan, T Zach</name>
</author>
<author>
<name>Gershon, Pnina</name>
</author>
<author>
<name>Domeyer, Josh</name>
</author>
<author>
<name>Mehler, Bruce</name>
</author>
<author>
<name>Reimer, Bryan</name>
</author>
<id>https://hdl.handle.net/1721.1/163651</id>
<updated>2026-04-14T03:28:46Z</updated>
<published>2022-08-26T00:00:00Z</published>
<summary type="text">Interdependence of driver and pedestrian behavior in naturalistic roadway negotiations
Noonan, T Zach; Gershon, Pnina; Domeyer, Josh; Mehler, Bruce; Reimer, Bryan
OBJECTIVE: This paper characterizes the actions of pedestrian-driver dyads by examining their interdependence across intersection types (e.g., zebra crossings, stop signs). Additionally, the analysis of interdependence captures other external factors, such as other vehicles or pedestrians, that may influence the interaction.&#13;
METHODS: A 228 epoch vehicle-pedestrian interaction dataset was extracted from a large naturalistic driving data collection effort, which included vehicle, pedestrian, and contextual information (e.g., intersection type, jaywalking, vehicle maneuver, and lead vehicle presence). An expanded Actor-Partner Interdependence Model (APIM) was used to analyze driver-pedestrian dyads using driver and pedestrian standard deviations of velocity as the independent variables and wait times as dependent variables. APIM structural equation models were augmented to include driver effects (i.e., lead vehicle and maneuver type) and pedestrian effects (i.e., lead pedestrian, crossing group size, crossing direction).&#13;
RESULTS: The level of protection afforded by an intersection had an effect on the extent of driver-pedestrian dyadic behavior. Interactions in undesignated crossings (i.e., jaywalking) were associated with interdependent behavior whereas interactions in designated crossings (i.e., crosswalks and parking lots) showed a partner effect on the driver's wait time but no significant corresponding partner effect on the pedestrian. Finally, protected intersection interactions (i.e., traffic lights and stop signs) demonstrated no significant partner effects.&#13;
CONCLUSIONS: The difference in behavior patterns associated with the intersection type and level of protection shows that context can mediate the level of negotiation required between drivers and pedestrians. These findings inform how context and driver-pedestrian interactions should be incorporated in future modeling efforts which may, ultimately, support design of automated systems that are able to interact more safely, efficiently, and socially.
</summary>
<dc:date>2022-08-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>When do systematic strategies decay?</title>
<link href="https://hdl.handle.net/1721.1/163650" rel="alternate"/>
<author>
<name>Falck, Antoine</name>
</author>
<author>
<name>Rej, Adam</name>
</author>
<author>
<name>Thesmar, David</name>
</author>
<id>https://hdl.handle.net/1721.1/163650</id>
<updated>2026-04-14T03:28:44Z</updated>
<published>2022-08-08T00:00:00Z</published>
<summary type="text">When do systematic strategies decay?
Falck, Antoine; Rej, Adam; Thesmar, David
Published anomalies evaluated outside the data sample deliver about 50% of in-sample performance.
</summary>
<dc:date>2022-08-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>When AI Is Wrong: Addressing Liability Challenges in Women’s Healthcare</title>
<link href="https://hdl.handle.net/1721.1/163649" rel="alternate"/>
<author>
<name>Marotta, Angelica</name>
</author>
<id>https://hdl.handle.net/1721.1/163649</id>
<updated>2026-04-14T03:28:39Z</updated>
<published>2022-06-20T00:00:00Z</published>
<summary type="text">When AI Is Wrong: Addressing Liability Challenges in Women’s Healthcare
Marotta, Angelica
Healthcare professionals can leverage Artificial intelligence (AI) to provide better care for theirpatients. However, it is also necessary to consider that AI algorithms operate according to historicaldiagnostic data, which often include evidence gathered from men. The biases of prior practices andthe perpetuation of exclusionary processes toward women can lead to inaccurate medical deci-sions. The ramifications of such errors show that the incorrect use of AI raises several criticalquestions regarding who should be responsible for potential incidents. This study aims to providean analysis of the role of AI in affecting women’s healthcare and an overview of the liabilityimplications caused by AI mistakes. Finally, this work presents a framework for algorithmic auditingto ensure that AI data are collected and stored according to secure, legal, and fair practices.
</summary>
<dc:date>2022-06-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Toughening and Imparting Deconstructability to 3D‐Printed Glassy Thermosets with “Transferinker” Additives</title>
<link href="https://hdl.handle.net/1721.1/163646" rel="alternate"/>
<author>
<name>Qin, K Peter</name>
</author>
<author>
<name>Herzog‐Arbeitman, Abraham</name>
</author>
<author>
<name>Zou, Weizhong</name>
</author>
<author>
<name>Chakraborty, Saswata</name>
</author>
<author>
<name>Kristufek, Samantha L</name>
</author>
<author>
<name>Husted, Keith EL</name>
</author>
<author>
<name>Joly, Guy D</name>
</author>
<author>
<name>Craig, Stephen L</name>
</author>
<author>
<name>Olsen, Bradley D</name>
</author>
<author>
<name>Johnson, Jeremiah A</name>
</author>
<id>https://hdl.handle.net/1721.1/163646</id>
<updated>2026-04-14T03:28:47Z</updated>
<published>2024-09-11T00:00:00Z</published>
<summary type="text">Toughening and Imparting Deconstructability to 3D‐Printed Glassy Thermosets with “Transferinker” Additives
Qin, K Peter; Herzog‐Arbeitman, Abraham; Zou, Weizhong; Chakraborty, Saswata; Kristufek, Samantha L; Husted, Keith EL; Joly, Guy D; Craig, Stephen L; Olsen, Bradley D; Johnson, Jeremiah A
Thermoset toughness and deconstructability are often opposing features; simultaneously improving both without sacrificing other mechanical properties (e.g., stiffness and tensile strength) is difficult, but, if achieved, could enhance the usage lifetime and end‐of‐life options for these materials. Here, a strategy that addresses this challenge in the context of photopolymer resins commonly used for 3D printing of glassy, acrylic thermosets is introduced. It is shown that incorporating bis‐acrylate “transferinkers,” which are cross‐linkers capable of undergoing degenerative chain transfer and new strand growth, as additives (5–25 mol%) into homemade or commercially available photopolymer resins leads to photopolymer thermosets with substantially improved tensile toughness and triggered chemical deconstructability with minimal impacts on Young's moduli, tensile strengths, and glass transition temperatures. These properties result from a transferinker‐driven topological transition in network structure from the densely cross‐linked long, heterogeneous primary strands of traditional photopolymer networks to more uniform, star‐like networks with few dangling ends; the latter structure more effectively bear stress yet is also more easily depercolated via solvolysis. Thus, transferinkers represent a simple and effective strategy for improving the mechanical properties of photopolymer thermosets and providing a mechanism for their triggered deconstructability.
</summary>
<dc:date>2024-09-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, MIT.nano</title>
<link href="https://hdl.handle.net/1721.1/163645" rel="alternate"/>
<author>
<name>Bulovic, Vladimir</name>
</author>
<id>https://hdl.handle.net/1721.1/163645</id>
<updated>2025-11-14T03:11:17Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, MIT.nano
Bulovic, Vladimir
This report contains the following sections: Catalyzing Discovery; User Base; Infrastructure, Tools, and Capabilities; Cultivating a Community; Financial Sustainability and Programs; Operational Model and Governance; and Looking Forward.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>DustNet++: Deep Learning-Based Visual Regression for Dust Density Estimation</title>
<link href="https://hdl.handle.net/1721.1/163644" rel="alternate"/>
<author>
<name>Michel, Andreas</name>
</author>
<author>
<name>Weinmann, Martin</name>
</author>
<author>
<name>Kuester, Jannick</name>
</author>
<author>
<name>AlNasser, Faisal</name>
</author>
<author>
<name>Gomez, Tomas</name>
</author>
<author>
<name>Falvey, Mark</name>
</author>
<author>
<name>Schmitz, Rainer</name>
</author>
<author>
<name>Middelmann, Wolfgang</name>
</author>
<author>
<name>Hinz, Stefan</name>
</author>
<id>https://hdl.handle.net/1721.1/163644</id>
<updated>2026-04-14T03:17:13Z</updated>
<published>2025-02-24T00:00:00Z</published>
<summary type="text">DustNet++: Deep Learning-Based Visual Regression for Dust Density Estimation
Michel, Andreas; Weinmann, Martin; Kuester, Jannick; AlNasser, Faisal; Gomez, Tomas; Falvey, Mark; Schmitz, Rainer; Middelmann, Wolfgang; Hinz, Stefan
Detecting airborne dust in standard RGB images presents significant challenges. Nevertheless, the monitoring of airborne dust holds substantial potential benefits for climate protection, environmentally sustainable construction, scientific research, and various other fields. To develop an efficient and robust algorithm for airborne dust monitoring, several hurdles have to be addressed. Airborne dust can be opaque or translucent, exhibit considerable variation in density, and possess indistinct boundaries. Moreover, distinguishing dust from other atmospheric phenomena, such as fog or clouds, can be particularly challenging. To meet the demand for a high-performing and reliable method for monitoring airborne dust, we introduce DustNet++, a neural network designed for dust density estimation. DustNet++ leverages feature maps from multiple resolution scales and semantic levels through window and grid attention mechanisms to maintain a sparse, globally effective receptive field with linear complexity. To validate our approach, we benchmark the performance of DustNet++ against existing methods from the domains of crowd counting and monocular depth estimation using the Meteodata airborne dust dataset and the URDE binary dust segmentation dataset. Our findings demonstrate that DustNet++ surpasses comparative methodologies in terms of regression and localization capabilities.
</summary>
<dc:date>2025-02-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>The first half-century of empirical capital markets research in accounting in pictures</title>
<link href="https://hdl.handle.net/1721.1/163643" rel="alternate"/>
<author>
<name>Kothari, S. P.</name>
</author>
<author>
<name>Schonberger, Bryce</name>
</author>
<author>
<name>Wasley, Charles</name>
</author>
<author>
<name>Xiao, Jason J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163643</id>
<updated>2025-11-14T03:10:09Z</updated>
<published>2025-06-07T00:00:00Z</published>
<summary type="text">The first half-century of empirical capital markets research in accounting in pictures
Kothari, S. P.; Schonberger, Bryce; Wasley, Charles; Xiao, Jason J.
Seminal papers by Ball and Brown (1968) and Beaver (1968) spawned a vast literature on the role of accounting numbers in capital markets. This literature, often referred to as capital markets research in accounting (CMRA), is now more than a half-century old. In light of numerous changes to the economic and financial reporting environments over this time, we estimate CMRA’s major relations using a comprehensive sample period. We illustrate each relation using plots, allowing us to efficiently present CMRA’s first half-century consistent with the adage “a picture is worth a thousand words.” The aims of our study are to document the extent of time-series variation in CMRA’s major relations and to provide evidence on market-level determinants of that variation. In doing so, our study provides a natural starting point for future research designed to develop and test additional causal explanations for time-series variation in the properties of CMRA’s major relations.
</summary>
<dc:date>2025-06-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>SeCOM-B: an integrated model for understanding human behaviour change in wicked socio-ecological problems</title>
<link href="https://hdl.handle.net/1721.1/163642" rel="alternate"/>
<author>
<name>Nguyen-Trung, Kien</name>
</author>
<author>
<name>Saeri, Alexander K.</name>
</author>
<author>
<name>Zhao, Kun</name>
</author>
<author>
<name>Boulet, Mark</name>
</author>
<author>
<name>Kaufman, Stefan</name>
</author>
<id>https://hdl.handle.net/1721.1/163642</id>
<updated>2026-04-14T03:27:25Z</updated>
<published>2025-09-19T00:00:00Z</published>
<summary type="text">SeCOM-B: an integrated model for understanding human behaviour change in wicked socio-ecological problems
Nguyen-Trung, Kien; Saeri, Alexander K.; Zhao, Kun; Boulet, Mark; Kaufman, Stefan
The COM-B model, widely adopted in behaviour change research, systematically explores and categorises the behavioural barriers and facilitators to inform intervention design. The model highlights that where the right mix of barriers and facilitators, in the broad categories of capability, motivation, and opportunity exist, a given behaviour is more likely to be enacted. However, for wicked problems, applying the COM-B model becomes challenging due to complexity, uncertainty, manageability challenges, and the interpretative opacity of the systems that influence behaviour. This paper introduces a combined framework (SeCOM-B) that integrates the Socio-ecological model (SEM) and the COM-B model, highlighting its potential application in co-designing behaviour change interventions to address wicked problems, which often involve non-scientific stakeholders and interdisciplinary team members. Drawing on three case studies of practical behaviour change projects taking place in Australia (2) and Vietnam (1) between March 2022 and July 2023, the paper further illustrates the application of the SeCOM-B model in analysing the drivers and barriers of behaviours, and exploring the implications for intervention design.
</summary>
<dc:date>2025-09-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Horizontal transfer of matrix metalloproteinase genes links early animal and microbial evolution</title>
<link href="https://hdl.handle.net/1721.1/163641" rel="alternate"/>
<author>
<name>Parsons, Chris</name>
</author>
<author>
<name>Fournier, Gregory P.</name>
</author>
<id>https://hdl.handle.net/1721.1/163641</id>
<updated>2026-04-14T03:27:28Z</updated>
<published>2025-11-05T00:00:00Z</published>
<summary type="text">Horizontal transfer of matrix metalloproteinase genes links early animal and microbial evolution
Parsons, Chris; Fournier, Gregory P.
Background The early evolution of animals is characterized by the emergence of complex tissues, organs, and integument, made possible in part by the diversification of groups of structural proteins. The abundance of this new kind of organic material in the environment would have provided novel nutrient opportunities for microbes, as part of the beginnings of animal-microbial coevolution. Indeed, a diverse ensemble of extant microbial groups appear to possess the enzymatic ability to cleave collagen, the most abundant animal-specific protein, through the use of matrix metalloproteinases (MMPs). In animals, MMPs serve to reshape the extracellular matrix in the course of development, but their prevalence in the microbial world has been largely overlooked. Results MMPs have extensive diversity in Bacteria, Eumetazoa, and Streptophyta. We show that in marine metagenomes, MMP abundance is highly correlated with chitinase abundance, implying that even microbial MMPs are associated with animal-derived substrates. Reconstructing the phylogeny of MMP proteins reveals a history of rapid diversification, as well as multiple interkingdom and interdomain horizontal gene transfers. Included among these is a transfer to the ancestral lineage of the archaeal family Methanosarcinaceae, constraining this group to postdate the evolution of collagen, and therefore animal diversification. Conclusions MMPs have an unusual genetic history, marked by multiple instances of gene transfer between bacteria and multicellular eukaryotes, a smoking gun for some of the earliest coevolution between prokaryotes and metazoans. By calculating an end-Permian divergence of Methanosarcina, we demonstrate that the phylogenies of substrate-specific enzymes can provide valuable older-bound age calibrations for improving molecular clock age estimates across the Tree of Life.
</summary>
<dc:date>2025-11-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>New physics versus quenching factors in Coherent Neutrino Scattering</title>
<link href="https://hdl.handle.net/1721.1/163640" rel="alternate"/>
<author>
<name>Li, Yulun</name>
</author>
<author>
<name>Herrera, Gonzalo</name>
</author>
<author>
<name>Huber, Patrick</name>
</author>
<id>https://hdl.handle.net/1721.1/163640</id>
<updated>2026-04-14T03:27:28Z</updated>
<published>2025-11-05T00:00:00Z</published>
<summary type="text">New physics versus quenching factors in Coherent Neutrino Scattering
Li, Yulun; Herrera, Gonzalo; Huber, Patrick
Recent results on the Coherent Elastic Neutrino-Nucleus Scattering (CEνNS) on germanium present significant discrepancies among experiments. We perform a combined analysis of the Dresden-II, CONUS+ and COHERENT data, quantifying the impact of quenching factor uncertainties on their CEνNS cross section measurement. No choice of quenching factor can bring these three data sets into mutual agreement, whereas the combination of COHERENT with either Dresden-II or CONUS+ agrees well albeit for very different quenching factors. We further study the quenching factor dependence on the sensitivity of these experiments to a large neutrino magnetic moment, finding that the constraints can vary by up to an order of magnitude. Our work highlights the importance of reducing this uncertainty on quenching factors in order to probe new physics from neutrinos at the low-energy frontier.
</summary>
<dc:date>2025-11-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Skydiving to bootstrap islands</title>
<link href="https://hdl.handle.net/1721.1/163639" rel="alternate"/>
<author>
<name>Liu, Aike</name>
</author>
<author>
<name>Simmons-Duffin, David</name>
</author>
<author>
<name>Su, Ning</name>
</author>
<author>
<name>van Rees, Balt C.</name>
</author>
<id>https://hdl.handle.net/1721.1/163639</id>
<updated>2026-04-14T03:27:27Z</updated>
<published>2025-11-04T00:00:00Z</published>
<summary type="text">Skydiving to bootstrap islands
Liu, Aike; Simmons-Duffin, David; Su, Ning; van Rees, Balt C.
We study families of semidefinite programs (SDPs) that depend nonlinearly on a small number of “external” parameters. Such families appear universally in numerical bootstrap computations. The traditional method for finding an optimal point in parameter space works by first solving an SDP with fixed external parameters, then moving to a new point in parameter space and repeating the process. Instead, we unify solving the SDP and moving in parameter space in a single algorithm that we call “skydiving”. We test skydiving on some representative problems in the conformal bootstrap, finding significant speedups compared to traditional methods.
</summary>
<dc:date>2025-11-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Search for top squarks in final states with many&#13;
light-flavor jets and 0, 1, or 2 charged leptons in&#13;
proton-proton collisions at √s = 13 TeV</title>
<link href="https://hdl.handle.net/1721.1/163638" rel="alternate"/>
<author>
<name>Chekhovsky, V.</name>
</author>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Makarenko, V.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Benato, L.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<author>
<name>Schieck, J.</name>
</author>
<author>
<name>The CMS collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163638</id>
<updated>2026-04-14T03:27:25Z</updated>
<published>2025-10-29T00:00:00Z</published>
<summary type="text">Search for top squarks in final states with many&#13;
light-flavor jets and 0, 1, or 2 charged leptons in&#13;
proton-proton collisions at √s = 13 TeV
Chekhovsky, V.; Hayrapetyan, A.; Makarenko, V.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Benato, L.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.; Schieck, J.; The CMS collaboration
Several new physics models including versions of supersymmetry (SUSY) characterized by R-parity violation (RPV) or with additional hidden sectors predict the production of events with top quarks, low missing transverse momentum, and many additional quarks or gluons. The results of a search for top squarks decaying to two top quarks and six additional light-flavor quarks or gluons are reported. The search employs a novel machine learning method for background estimation from control samples in data using decorrelated discriminators. The search is performed using events with 0, 1, or 2 electrons or muons in conjunction with at least six jets. No requirement is placed on the magnitude of the missing transverse momentum. The result is based on a sample of proton-proton collisions at $$\sqrt{s}=13$$ TeV corresponding to 138 fb−1 of integrated luminosity collected with the CMS detector at the LHC in 2016–2018. With no statistically significant excess of events observed beyond the expected contributions from the standard model, the data are used to determine upper limits on the top squark pair production cross section in the frameworks of RPV and stealth SUSY. Models with top squark masses less than 700 (930) GeV are excluded at 95% confidence level for RPV (stealth) SUSY scenarios.
</summary>
<dc:date>2025-10-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Study of same-sign W boson scattering and anomalous couplings in events with one tau lepton from pp collisions at √s = 13 TeV</title>
<link href="https://hdl.handle.net/1721.1/163637" rel="alternate"/>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<author>
<name>Schieck, J.</name>
</author>
<author>
<name>Schöfbeck, R.</name>
</author>
<author>
<name>Schwarz, D.</name>
</author>
<author>
<name>Sonawane, M.</name>
</author>
<author>
<name>The CMS collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163637</id>
<updated>2026-04-14T03:27:23Z</updated>
<published>2025-10-27T00:00:00Z</published>
<summary type="text">Study of same-sign W boson scattering and anomalous couplings in events with one tau lepton from pp collisions at √s = 13 TeV
Hayrapetyan, A.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.; Schieck, J.; Schöfbeck, R.; Schwarz, D.; Sonawane, M.; The CMS collaboration
A first study is presented of the cross section for the scattering of same-sign W boson pairs via the detection of a τ lepton. The data from proton-proton collisions at the center-of-mass energy of 13 TeV were collected by the CMS detector at the LHC, and correspond to an integrated luminosity of 138 fb−1. Events were selected that contain two jets with large pseudorapidity and large invariant mass, one τ lepton, one light lepton (e or μ), and significant missing transverse momentum. The measured cross section for electroweak same-sign WW scattering is $${1.44}_{-0.56}^{+0.63}$$ times the standard model prediction. In addition, a search is presented for the indirect effects of processes beyond the standard model via the effective field theory framework, in terms of dimension-6 and dimension-8 operators.
</summary>
<dc:date>2025-10-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Search for dark matter produced in association with a Higgs boson decaying to a τ lepton pair in proton-proton collisions at √s = 13 TeV</title>
<link href="https://hdl.handle.net/1721.1/163636" rel="alternate"/>
<author>
<name>Chekhovsky, V.</name>
</author>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Makarenko, V.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Benato, L.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>The CMS Collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163636</id>
<updated>2026-04-14T03:27:23Z</updated>
<published>2025-10-21T00:00:00Z</published>
<summary type="text">Search for dark matter produced in association with a Higgs boson decaying to a τ lepton pair in proton-proton collisions at √s = 13 TeV
Chekhovsky, V.; Hayrapetyan, A.; Makarenko, V.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Benato, L.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; The CMS Collaboration
A search for dark matter particles produced in association with a Higgs boson decaying into a pair of τ leptons is performed using data collected in proton-proton collisions at a center-of-mass energy of 13 TeV with the CMS detector. The analysis is based on a data set corresponding to an integrated luminosity of 101 fb−1 collected in 2017–2018. No significant excess over the expected standard model background is observed. This result is interpreted within the frameworks of the 2HDM+a and baryonic Z′ benchmark simplified models. The 2HDM+a model is a type-II two-Higgs-doublet model featuring a heavy pseudoscalar with an additional light pseudoscalar. Upper limits at 95% confidence level are set on the product of the production cross section and the branching fraction for each of these two simplified models. Heavy pseudoscalar boson masses between 400 and 700 GeV are excluded for a light pseudoscalar mass of 100 GeV. For the baryonic Z′ model, a statistical combination is made with an earlier search based on a data set of 36 fb−1 collected in 2016. In this model, Z′ boson masses up to 1050 GeV are excluded for a dark matter particle mass of 1 GeV.
</summary>
<dc:date>2025-10-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Massively parallel enrichment of low-frequency alleles enables duplex sequencing at low depth</title>
<link href="https://hdl.handle.net/1721.1/163635" rel="alternate"/>
<author>
<name>Gydush, Gregory</name>
</author>
<author>
<name>Nguyen, Erica</name>
</author>
<author>
<name>Bae, Jin H</name>
</author>
<author>
<name>Blewett, Timothy</name>
</author>
<author>
<name>Rhoades, Justin</name>
</author>
<author>
<name>Reed, Sarah C</name>
</author>
<author>
<name>Shea, Douglas</name>
</author>
<author>
<name>Xiong, Kan</name>
</author>
<author>
<name>Liu, Ruolin</name>
</author>
<author>
<name>Yu, Fangyan</name>
</author>
<author>
<name>Leong, Ka Wai</name>
</author>
<author>
<name>Choudhury, Atish D</name>
</author>
<author>
<name>Stover, Daniel G</name>
</author>
<author>
<name>Tolaney, Sara M</name>
</author>
<author>
<name>Krop, Ian E</name>
</author>
<author>
<name>Christopher Love, J</name>
</author>
<author>
<name>Parsons, Heather A</name>
</author>
<author>
<name>Mike Makrigiorgos, G</name>
</author>
<author>
<name>Golub, Todd R</name>
</author>
<author>
<name>Adalsteinsson, Viktor A</name>
</author>
<id>https://hdl.handle.net/1721.1/163635</id>
<updated>2026-04-14T03:28:45Z</updated>
<published>2022-03-17T00:00:00Z</published>
<summary type="text">Massively parallel enrichment of low-frequency alleles enables duplex sequencing at low depth
Gydush, Gregory; Nguyen, Erica; Bae, Jin H; Blewett, Timothy; Rhoades, Justin; Reed, Sarah C; Shea, Douglas; Xiong, Kan; Liu, Ruolin; Yu, Fangyan; Leong, Ka Wai; Choudhury, Atish D; Stover, Daniel G; Tolaney, Sara M; Krop, Ian E; Christopher Love, J; Parsons, Heather A; Mike Makrigiorgos, G; Golub, Todd R; Adalsteinsson, Viktor A
Assaying for large numbers of low-frequency mutations requires sequencing at extremely high depth and accuracy. Increasing sequencing depth aids the detection of low-frequency mutations yet limits the number of loci that can be simultaneously probed. Here we report a method for the accurate tracking of thousands of distinct mutations that requires substantially fewer reads per locus than conventional hybrid-capture duplex sequencing. The method, which we named MAESTRO (for minor-allele-enriched sequencing through recognition oligonucleotides), combines massively parallel mutation enrichment with duplex sequencing to track up to 10,000 low-frequency mutations, with up to 100-fold fewer reads per locus. We show that MAESTRO can be used to test for chimaerism by tracking donor-exclusive single-nucleotide polymorphisms in sheared genomic DNA from human cell lines, to validate whole-exome sequencing and whole-genome sequencing for the detection of mutations in breast-tumour samples from 16 patients, and to monitor the patients for minimal residual disease via the analysis of cell-free DNA from liquid biopsies. MAESTRO improves the breadth, depth, accuracy and efficiency of mutation testing by sequencing.
</summary>
<dc:date>2022-03-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Peanut oral immunotherapy differentially suppresses clonally distinct subsets of T helper cells</title>
<link href="https://hdl.handle.net/1721.1/163634" rel="alternate"/>
<author>
<name>Monian, Brinda</name>
</author>
<author>
<name>Tu, Ang A</name>
</author>
<author>
<name>Ruiter, Bert</name>
</author>
<author>
<name>Morgan, Duncan M</name>
</author>
<author>
<name>Petrossian, Patrick M</name>
</author>
<author>
<name>Smith, Neal P</name>
</author>
<author>
<name>Gierahn, Todd M</name>
</author>
<author>
<name>Ginder, Julia H</name>
</author>
<author>
<name>Shreffler, Wayne G</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<id>https://hdl.handle.net/1721.1/163634</id>
<updated>2026-04-14T03:28:36Z</updated>
<published>2021-11-23T00:00:00Z</published>
<summary type="text">Peanut oral immunotherapy differentially suppresses clonally distinct subsets of T helper cells
Monian, Brinda; Tu, Ang A; Ruiter, Bert; Morgan, Duncan M; Petrossian, Patrick M; Smith, Neal P; Gierahn, Todd M; Ginder, Julia H; Shreffler, Wayne G; Love, J Christopher
Food allergy affects an estimated 8% of children in the United States. Oral immunotherapy (OIT) is a recently approved treatment, with outcomes ranging from sustained tolerance to food allergens to no apparent benefit. The immunological underpinnings that influence clinical outcomes of OIT remain largely unresolved. Using single-cell RNA-Seq and paired T cell receptor α/β (TCRα/β) sequencing, we assessed the transcriptomes of CD154+ and CD137+ peanut-reactive T helper (Th) cells from 12 patients with peanut allergy longitudinally throughout OIT. We observed expanded populations of cells expressing Th1, Th2, and Th17 signatures that further separated into 6 clonally distinct subsets. Four of these subsets demonstrated a convergence of TCR sequences, suggesting antigen-driven T cell fates. Over the course of OIT, we observed suppression of Th2 and Th1 gene signatures in effector clonotypes but not T follicular helper-like (Tfh-like) clonotypes. Positive outcomes were associated with stronger suppression of Th2 signatures in Th2A-like cells, while treatment failure was associated with the expression of baseline inflammatory gene signatures that were present in Th1 and Th17 cell populations and unmodulated by OIT. These results demonstrate that differential clinical responses to OIT are associated with both preexisting characteristics of peanut-reactive CD4+ T cells and suppression of a subset of Th2 cells.
</summary>
<dc:date>2021-11-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mitochondrial variant enrichment from high-throughput single-cell RNA sequencing resolves clonal populations</title>
<link href="https://hdl.handle.net/1721.1/163633" rel="alternate"/>
<author>
<name>Miller, Tyler E</name>
</author>
<author>
<name>Lareau, Caleb A</name>
</author>
<author>
<name>Verga, Julia A</name>
</author>
<author>
<name>DePasquale, Erica AK</name>
</author>
<author>
<name>Liu, Vincent</name>
</author>
<author>
<name>Ssozi, Daniel</name>
</author>
<author>
<name>Sandor, Katalin</name>
</author>
<author>
<name>Yin, Yajie</name>
</author>
<author>
<name>Ludwig, Leif S</name>
</author>
<author>
<name>El Farran, Chadi A</name>
</author>
<author>
<name>Morgan, Duncan M</name>
</author>
<author>
<name>Satpathy, Ansuman T</name>
</author>
<author>
<name>Griffin, Gabriel K</name>
</author>
<author>
<name>Lane, Andrew A</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<author>
<name>Bernstein, Bradley E</name>
</author>
<author>
<name>Sankaran, Vijay G</name>
</author>
<author>
<name>van Galen, Peter</name>
</author>
<id>https://hdl.handle.net/1721.1/163633</id>
<updated>2026-04-14T03:28:40Z</updated>
<published>2022-02-24T00:00:00Z</published>
<summary type="text">Mitochondrial variant enrichment from high-throughput single-cell RNA sequencing resolves clonal populations
Miller, Tyler E; Lareau, Caleb A; Verga, Julia A; DePasquale, Erica AK; Liu, Vincent; Ssozi, Daniel; Sandor, Katalin; Yin, Yajie; Ludwig, Leif S; El Farran, Chadi A; Morgan, Duncan M; Satpathy, Ansuman T; Griffin, Gabriel K; Lane, Andrew A; Love, J Christopher; Bernstein, Bradley E; Sankaran, Vijay G; van Galen, Peter
The combination of single-cell transcriptomics with mitochondrial DNA variant detection can be used to establish lineage relationships in primary human cells, but current methods are not scalable to interrogate complex tissues. Here, we combine common 3′ single-cell RNA-sequencing protocols with mitochondrial transcriptome enrichment to increase coverage by more than 50-fold, enabling high-confidence mutation detection. The method successfully identifies skewed immune-cell expansions in primary human clonal hematopoiesis.
</summary>
<dc:date>2022-02-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>SARS-CoV-2 receptor binding domain displayed on HBsAg virus–like particles elicits protective immunity in macaques</title>
<link href="https://hdl.handle.net/1721.1/163632" rel="alternate"/>
<author>
<name/>
</author>
<id>https://hdl.handle.net/1721.1/163632</id>
<updated>2026-04-14T03:28:49Z</updated>
<published>2022-03-16T00:00:00Z</published>
<summary type="text">SARS-CoV-2 receptor binding domain displayed on HBsAg virus–like particles elicits protective immunity in macaques
Authorized vaccines against SARS-CoV-2 remain less available in low- and middle-income countries due to insufficient supply, high costs, and storage requirements. Global immunity could still benefit from new vaccines using widely available, safe adjuvants, such as alum and protein subunits, suited to low-cost production in existing manufacturing facilities. Here, a clinical-stage vaccine candidate comprising a SARS-CoV-2 receptor binding domain–hepatitis B surface antigen virus–like particle elicited protective immunity in cynomolgus macaques. Titers of neutralizing antibodies (&gt;104) induced by this candidate were above the range of protection for other licensed vaccines in nonhuman primates. Including CpG 1018 did not significantly improve the immunological responses. Vaccinated animals challenged with SARS-CoV-2 showed reduced median viral loads in bronchoalveolar lavage (~3.4 log10) and nasal mucosa (~2.9 log10) versus sham controls. These data support the potential benefit of this design for a low-cost modular vaccine platform for SARS-CoV-2 and other variants of concern or betacoronaviruses.
</summary>
<dc:date>2022-03-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Searching for exotic scalars at fusion reactors</title>
<link href="https://hdl.handle.net/1721.1/163631" rel="alternate"/>
<author>
<name>Baruch, Chaja</name>
</author>
<author>
<name>Fitzpatrick, Patrick J.</name>
</author>
<author>
<name>Menzo, Tony</name>
</author>
<author>
<name>Soreq, Yotam</name>
</author>
<author>
<name>Trifinopoulos, Sokratis</name>
</author>
<author>
<name>Zupan, Jure</name>
</author>
<id>https://hdl.handle.net/1721.1/163631</id>
<updated>2026-04-14T03:27:32Z</updated>
<published>2025-10-27T00:00:00Z</published>
<summary type="text">Searching for exotic scalars at fusion reactors
Baruch, Chaja; Fitzpatrick, Patrick J.; Menzo, Tony; Soreq, Yotam; Trifinopoulos, Sokratis; Zupan, Jure
Part of the energy created in deuterium-tritium fusion reactors is carried away from plasma by a high-intensity neutron flux, which is then absorbed by the reactor’s inner walls. The neutron flux can be used to sustain the reaction by the following mechanism: the walls are coated with lithium-rich breeding blankets, in which a fraction of neutrons interacts with lithium, creating tritium, which can be, in turn, used a fuel for the main reaction. The interactions of neutrons with the materials within the breeding blanket can also result in the production of dark sector particles, feebly interacting light scalars or pseudoscalars, via nuclear transitions. We estimate the potential size of such dark sector flux outside the reactor and consider possible detection methods at current and future thermonuclear fusion reactors. In our analysis, we take into account all other current bounds, recasting also the SNO axion bound for a CP even scalar. We find that year-long searches at current and future reactors can set leading constraints on dark scalar- and dark pseudoscalar-nucleon couplings.
</summary>
<dc:date>2025-10-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurements of charmed meson and antimeson production asymmetries at √s = 13.6 TeV</title>
<link href="https://hdl.handle.net/1721.1/163630" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<author>
<name>The LHCb collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163630</id>
<updated>2026-04-14T03:27:17Z</updated>
<published>2025-10-07T00:00:00Z</published>
<summary type="text">Measurements of charmed meson and antimeson production asymmetries at √s = 13.6 TeV
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.; The LHCb collaboration
This article presents doubly differential measurements of the asymmetries in production rates between mesons containing a charm quark and those containing an anti-charm quark in proton-proton collisions at a centre-of-mass energy of s = 13.6 TeV using data recorded by the LHCb experiment. The asymmetries of D0, D+ and D s + mesons are measured for two-dimensional intervals in transverse momentum and pseudorapidity, within the range 2.5 &lt; pT &lt; 25.0 GeV/c and 2.0 &lt; η &lt; 4.5. No significant production asymmetries are observed. Comparisons to the Pythia 8 and Herwig 7 event generators are also presented, and their agreement with the data is evaluated. These measurements constitute the first measurements of production asymmetries at this centre-of-mass energy of colliding beams, and the first measurements with the LHCb Run 3 detector.
</summary>
<dc:date>2025-10-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Urban Planning for Health Equity Must Employ an Intersectionality Framework</title>
<link href="https://hdl.handle.net/1721.1/163629" rel="alternate"/>
<author>
<name>Williams, Patrice C</name>
</author>
<author>
<name>Binet, Andrew</name>
</author>
<author>
<name>Alhasan, Dana M</name>
</author>
<author>
<name>Riley, Nyree M</name>
</author>
<author>
<name>Jackson, Chandra L</name>
</author>
<id>https://hdl.handle.net/1721.1/163629</id>
<updated>2026-04-14T03:28:34Z</updated>
<published>2022-07-12T00:00:00Z</published>
<summary type="text">Urban Planning for Health Equity Must Employ an Intersectionality Framework
Williams, Patrice C; Binet, Andrew; Alhasan, Dana M; Riley, Nyree M; Jackson, Chandra L
Urban planning for health equity should be guided by an intersectional approach. Intersectionality is an essential framework for understanding the multiple overlapping factors, such as social and economic inequalities, that produce health disparities. We offer four strategies that planning researchers and practitioners can use to develop and integrate an intersectional approach into planning for health equity: challenging implicit and explicit assumptions, building cross-sectoral coalitions united by a shared vision for social and environmental justice, applying transdisciplinary and co-designing approaches throughout the planning process, and using existing tools to evaluate the impact of programs and policies on advancing health equity.
</summary>
<dc:date>2022-07-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Characterizing driver speeding behavior when using partial-automation in real-world driving</title>
<link href="https://hdl.handle.net/1721.1/163628" rel="alternate"/>
<author>
<name>Haus, Samantha H</name>
</author>
<author>
<name>Gershon, Pnina</name>
</author>
<author>
<name>Mehler, Bruce</name>
</author>
<author>
<name>Reimer, Bryan</name>
</author>
<id>https://hdl.handle.net/1721.1/163628</id>
<updated>2026-04-14T03:28:38Z</updated>
<published>2022-07-12T00:00:00Z</published>
<summary type="text">Characterizing driver speeding behavior when using partial-automation in real-world driving
Haus, Samantha H; Gershon, Pnina; Mehler, Bruce; Reimer, Bryan
Objective: Speeding is a prevalent and complex risky behavior that can be affected by many fac-tors. Understanding how drivers speed is important for developing countermeasures, especially asnew automation features emerge. The current study seeks to identify and describe types of real-world speeding behaviors with and without the use of partial-automation.&#13;
Methods: This study used a combination of supervised and unsupervised data analysis techniquesto assess relevant factors in real-world speeding epochs, extracted from the MIT Advanced VehicleTechnology Naturalistic Driving Study, and classified them into distinct speeding behaviors.Speeding epochs were defined as traveling at least 5 mph over the speed limit for a minimumduration of 3 s. Vehicle speed-exceedance profiles were characterized over time using DynamicTime Warping and included in multivariate models that evaluated the associations between differ-ent features of the speeding epochs, such as speeding duration and magnitude. Finally, the identi-fied features were used to cluster speeding behaviors using the Gower dissimilarity measure.&#13;
Results: The analysis yielded four types of behaviors in both partially-automated and manual driv-ing: (i) Incidental speeding (low duration, low magnitude), (ii) Moderate speeding (low duration,moderate magnitude), (iii) Elevated speeding (moderate duration, high magnitude), and (iv)Extended speeding (long duration, high magnitude). When comparing the behaviors with andwithout partial-automation use, both Incidental and Moderate speeding were found to have sig-nificantly longer durations with partial-automation than manual driving. Elevated speeding wasfound to be more prevalent and associated with higher magnitudes during manual than with par-tially-automated driving. Finally, although Extended speeding was more prevalent during automa-tion use, it was associated with a lower mean and maximum speed magnitude compared toExtended speeding during manual driving.&#13;
Conclusions: This work highlights the variability in speeding behavior between and within par-tially-automated and manual driving. The design of systems that mitigate risky speeding behav-iors should consider targeting divergent behaviors observed between manual and automateddriving as a mechanism to mitigate the prevalence of the different behaviors associated witheach state.
</summary>
<dc:date>2022-07-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Validation and Uncertainty Quantification of Transient Reflood Models Using COBRA-TF and Machine Learning Techniques Based on the NRC/PSU RBHT Benchmark</title>
<link href="https://hdl.handle.net/1721.1/163627" rel="alternate"/>
<author>
<name>Jin, Yue</name>
</author>
<author>
<name>Bajorek, Stephen M</name>
</author>
<author>
<name>Cheung, Fan-Bill</name>
</author>
<id>https://hdl.handle.net/1721.1/163627</id>
<updated>2026-04-14T03:28:42Z</updated>
<published>2022-07-28T00:00:00Z</published>
<summary type="text">Validation and Uncertainty Quantification of Transient Reflood Models Using COBRA-TF and Machine Learning Techniques Based on the NRC/PSU RBHT Benchmark
Jin, Yue; Bajorek, Stephen M; Cheung, Fan-Bill
The accurate prediction of the fluid flow mass and the heat transfer process as well as the system response during reflood transients has long been a critical and challenging issue for reactor system safety analyses. Accurate characterization of the flow and energy transport can also significantly facilitate the various system/component design and optimization tasks. In the current study based on the U.S. Nuclear Regulatory Commission/Pennsylvania State University Rod Bundle Heat Transfer (RBHT) reflood experimental data, a comprehensive uncertainty analysis framework is developed using DAKOTA. The developed framework is used to perform an in-depth reflood model validation and verification for the subchannel analysis code COBRA-TF. In the meantime, the artificial intelligence (AI)–based machine learning (ML) model for rod cladding temperature prediction during reflood is also developed and evaluated using the current framework. Key input parametric effects for reflood thermal-hydraulic prediction include the system pressure, inlet liquid temperature/enthalpy, inlet mass flow rate, and average bundle power input. The figure of merit under consideration is the peak cladding temperature variations. It is found in the current study that, while further model improvement is needed, COBRA-TF can predict the correct parametric trends when compared with the RBHT data. On the other hand, it is challenging for the pure AI-based ML models to correctly reflect the parametric trends. Suggestions for future ML model development are provided in the end.
</summary>
<dc:date>2022-07-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Remote language revitalisation efforts during COVID-19</title>
<link href="https://hdl.handle.net/1721.1/163626" rel="alternate"/>
<author>
<name>Wiley-Camacho, Grahm</name>
</author>
<author>
<name>Hillaire, Garron</name>
</author>
<author>
<name>Buttimer, Christopher J</name>
</author>
<author>
<name>Colwell, Richard</name>
</author>
<id>https://hdl.handle.net/1721.1/163626</id>
<updated>2026-04-14T03:28:49Z</updated>
<published>2022-06-13T00:00:00Z</published>
<summary type="text">Remote language revitalisation efforts during COVID-19
Wiley-Camacho, Grahm; Hillaire, Garron; Buttimer, Christopher J; Colwell, Richard
As schools shift to online instruction during the COVID-19 pandemic, it is important to support disenfranchised populations and keep issues of equity at the centre of our response. In this study, the authors focus on supporting one of the few urban-based Indigenous language schools in the United States because language revitalisation is critical for Native American communities. The authors explore the extent to which video conferencing and flipped classrooms support the development of a community of speakers. The study focuses on a single classroom of 16 students in first through third grade. The authors use a digital decolonisation framework focused on empowering local communities in conjunction with design-based research methodology to explore contextualised remote instruction solutions. They report on benefits for the development of a community of speakers from remote instruction that come with costs in reduced efficacy of language learning. Finally, they distil those results into preliminary design principles.
</summary>
<dc:date>2022-06-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cohomogeneity Two Ricci Solitons with Sub-Euclidean Volume</title>
<link href="https://hdl.handle.net/1721.1/163625" rel="alternate"/>
<author>
<name>Firester, Benjy</name>
</author>
<author>
<name>Tsiamis, Raphael</name>
</author>
<id>https://hdl.handle.net/1721.1/163625</id>
<updated>2026-04-14T03:27:16Z</updated>
<published>2025-10-27T00:00:00Z</published>
<summary type="text">Cohomogeneity Two Ricci Solitons with Sub-Euclidean Volume
Firester, Benjy; Tsiamis, Raphael
We introduce new families of four-dimensional Ricci solitons of cohomogeneity two with volume collapsing ends. In a local presentation of the metric conformal to a product, we reduce the soliton equation to a degenerate Monge-Ampère equation for the conformal factor coupled with ODEs. We obtain explicit complete expanding solitons as well as abstract existence results for shrinking and steady solitons with boundary. These families of Ricci solitons specialize to classical examples of Einstein and soliton metrics. We also classify local solutions of this Monge-Ampère equation to prove rigidity for these solitons.
</summary>
<dc:date>2025-10-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>How Many Sexes? How Many Genders?</title>
<link href="https://hdl.handle.net/1721.1/163624" rel="alternate"/>
<author>
<name>Byrne, Alex</name>
</author>
<id>https://hdl.handle.net/1721.1/163624</id>
<updated>2026-04-14T03:24:20Z</updated>
<published>2025-09-10T00:00:00Z</published>
<summary type="text">How Many Sexes? How Many Genders?
Byrne, Alex
The British philosopher and public intellectual C. E. M. Joad was a regular panelist on the BBC radio show The Brains Trust during and after the Second World War. He often began an answer to listeners’ questions with his catchphrase “It all depends what you mean by…,” which caught on throughout the country (Ayto &amp; Crofton, 2011). If any question deserves Joad’s catchphrase, it is “How many genders?”
</summary>
<dc:date>2025-09-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>Is There Super-Normal Profit in Real Estate Development?*</title>
<link href="https://hdl.handle.net/1721.1/163623" rel="alternate"/>
<author>
<name>Geltner, David</name>
</author>
<author>
<name>Kumar, Anil</name>
</author>
<author>
<name>Van de Minne, Alex M</name>
</author>
<id>https://hdl.handle.net/1721.1/163623</id>
<updated>2026-04-14T03:28:48Z</updated>
<published>2022-07-11T00:00:00Z</published>
<summary type="text">Is There Super-Normal Profit in Real Estate Development?*
Geltner, David; Kumar, Anil; Van de Minne, Alex M
This paper explores the question of whether real estate development (RED) projects systematically present positive net present value (NPV) and therefore, provide super-normal profit. Such projects are the products of a business operation that governs the exercise of the real call option on development that is represented by developable land. We present a framework for considering super-normal profit in the RED industry, and then in light of that framework we examine RED projects produced by publicly-traded equity real estate investment trusts (REITs). We find strong evidence of positive correlation between REITs’ Tobin-Q ratios, indicative of positive NPV, and the ratio of development assets to total assets in the firm, controlling for other factors. The nature of the firm’s Tobin’s-Q metric is such that the implied added firm value is net of land cost and net of overhead and search costs associated with the RED business operation. While our findings do not prove a direction of causality between REITs’ RED activity and positive NPV, the robust positive correlation controlling for other factors raises interesting implications which are discussed in the paper.
</summary>
<dc:date>2022-07-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Countervailing Effects of Extreme Maximum and Minimum Temperature Days on Conflict in Mainland Southeast Asia</title>
<link href="https://hdl.handle.net/1721.1/163622" rel="alternate"/>
<author>
<name>Gasser, André Tashi</name>
</author>
<author>
<name>Lanz, Bruno</name>
</author>
<id>https://hdl.handle.net/1721.1/163622</id>
<updated>2026-04-14T03:27:22Z</updated>
<published>2025-11-03T00:00:00Z</published>
<summary type="text">Countervailing Effects of Extreme Maximum and Minimum Temperature Days on Conflict in Mainland Southeast Asia
Gasser, André Tashi; Lanz, Bruno
We exploit 0.5◦ × 0.5◦ raster data to document how exceedances of the local 90th percentile thresholds for daily maximum and minimum temperatures affect conflict in mainland&#13;
Southeast Asia. We show that conflict incidence increases with extreme high maximum&#13;
temperature days and decreases with extreme high minimum temperature days. This implies that failing to control for extreme minimums understates the effects of extreme maximums. Moreover, as the frequency of extreme maximums and minimums is expected to&#13;
increase together with average temperatures, the countervailing effects at both tails of&#13;
the temperature distribution offset one another in mean-temperature regressions, helping&#13;
to explain earlier inconclusive findings for the region. We also show that the effects of&#13;
extreme maximums and minimums differ by conflict type, actors involved and affected&#13;
populations. Thus, even in the absence of an aggregate mean-temperature effect, a rising frequency of extreme temperature days may generate complex distributional conflict&#13;
incidence.
</summary>
<dc:date>2025-11-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>An Optimization-Based Construction Procedure for Function Space-Based Summation-by-Parts Operators on Arbitrary Grids</title>
<link href="https://hdl.handle.net/1721.1/163621" rel="alternate"/>
<author>
<name>Glaubitz, Jan</name>
</author>
<author>
<name>Nordström, Jan</name>
</author>
<author>
<name>Öffner, Philipp</name>
</author>
<id>https://hdl.handle.net/1721.1/163621</id>
<updated>2026-04-14T03:27:21Z</updated>
<published>2025-11-06T00:00:00Z</published>
<summary type="text">An Optimization-Based Construction Procedure for Function Space-Based Summation-by-Parts Operators on Arbitrary Grids
Glaubitz, Jan; Nordström, Jan; Öffner, Philipp
We introduce a novel construction procedure for one-dimensional function space summation-by-parts (FSBP) operators. Existing construction procedures for FSBP operators of the form D = P - 1 Q proceed as follows: Given a boundary operator B, the norm matrix P is first determined and then in a second step the complementary matrix Q is calculated to finally get the FSBP operator D. In contrast, the approach proposed here determines the norm and complementary matrices, P and Q, simultaneously by solving an optimization problem. The proposed construction procedure applies to classical summation-by-parts (SBP) operators based on polynomial approximation and the broader class of FSBP operators. According to our experiments, the presented approach yields a numerically stable construction procedure and FSBP operators with higher accuracy for diagonal norm difference operators at the boundaries than the traditional approach. Through numerical simulations, we highlight the advantages of our proposed technique.
</summary>
<dc:date>2025-11-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cochlea to categories: The spatiotemporal dynamics of semantic auditory representations</title>
<link href="https://hdl.handle.net/1721.1/163620" rel="alternate"/>
<author>
<name>Lowe, Matthew X</name>
</author>
<author>
<name>Mohsenzadeh, Yalda</name>
</author>
<author>
<name>Lahner, Benjamin</name>
</author>
<author>
<name>Charest, Ian</name>
</author>
<author>
<name>Oliva, Aude</name>
</author>
<author>
<name>Teng, Santani</name>
</author>
<id>https://hdl.handle.net/1721.1/163620</id>
<updated>2026-04-14T03:28:43Z</updated>
<published>2022-06-21T00:00:00Z</published>
<summary type="text">Cochlea to categories: The spatiotemporal dynamics of semantic auditory representations
Lowe, Matthew X; Mohsenzadeh, Yalda; Lahner, Benjamin; Charest, Ian; Oliva, Aude; Teng, Santani
How does the auditory system categorize natural sounds? Here we apply multimodal neuroimaging to illustrate the progression from acoustic to semantically dominated representations. Combining magnetoencephalographic (MEG) and functional magnetic resonance imaging (fMRI) scans of observers listening to naturalistic sounds, we found superior temporal responses beginning ∼55 ms post-stimulus onset, spreading to extratemporal cortices by ∼100 ms. Early regions were distinguished less by onset/peak latency than by functional properties and overall temporal response profiles. Early acoustically-dominated representations trended systematically toward category dominance over time (after ∼200 ms) and space (beyond primary cortex). Semantic category representation was spatially specific: Vocalizations were preferentially distinguished in frontotemporal voice-selective regions and the fusiform; scenes and objects were distinguished in parahippocampal and medial place areas. Our results are consistent with real-world events coded via an extended auditory processing hierarchy, in which acoustic representations rapidly enter multiple streams specialized by category, including areas typically considered visual cortex.
</summary>
<dc:date>2022-06-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rapid and automated alloy design with graph neural network-powered large language model-driven multi-agent AI</title>
<link href="https://hdl.handle.net/1721.1/163619" rel="alternate"/>
<author>
<name>Ghafarollahi, Alireza</name>
</author>
<author>
<name>Buehler, Markus J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163619</id>
<updated>2026-04-14T03:27:26Z</updated>
<published>2025-11-06T00:00:00Z</published>
<summary type="text">Rapid and automated alloy design with graph neural network-powered large language model-driven multi-agent AI
Ghafarollahi, Alireza; Buehler, Markus J.
A multi-agent artificial intelligence (AI) model is developed to automate the discovery of new metallic alloys, integrating multimodal data and external knowledge, including insights from physics via atomistic simulations. The system consists of (a) large language models (LLMs) for tasks such as reasoning and planning, (b) AI agents with distinct roles collaborating dynamically, and (c) a newly developed graph neural network (GNN) model for rapid retrieval of physical properties. We chose the ternary NbMoTa body-centered-cubic alloy as our model system and developed the GNN to predict two fundamental materials properties: the Peierls barrier and the solute/screw dislocation interaction energy. Our GNN model efficiently predicts these properties, reducing reliance on costly brute-force calculations and alleviating the computational demands on the multi-agent system. By combining the predictive capabilities of GNNs with the collaborative intelligence of LLM-driven reasoning agents, the system autonomously explores vast alloy design spaces, identifies trends in atomic-scale properties, and predicts macroscale mechanical strength, as demonstrated by several computational experiments. This synergistic approach accelerates the discovery of advanced alloys and holds promise for broader applications in other complex systems, marking a step forward in automated materials discovery and design. Impact statement Traditional deep learning models, such as graph neural networks and convolutional neural networks, operate within the confines of their training data sets, making single-step inferences for regression or classification. Our work introduces a multi-agent strategy that transcends these limitations by integrating deep learning with reasoning and decision-making capabilities. This intelligent system actively interprets results, determines subsequent actions, and iteratively refines predictions, accelerating the materials design process. We demonstrate its effectiveness in exploring the vast compositional space of a ternary alloy, where the model dynamically solicits data, analyzes trends, generates visualizations, and derives insights into materials behavior. By enabling accurate predictions of key alloy characteristics, our approach advances the discovery of novel metallic systems and underscores the critical role of solid-solution alloying. More broadly, it represents a major step toward integrating artificial intelligence with scientific reasoning, moving closer to artificial general intelligence in engineering. This paradigm shift has profound implications for materials science, enabling more efficient, autonomous, and intelligent exploration of complex materials spaces. Graphical Abstract
</summary>
<dc:date>2025-11-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Latent Space Alignment Using Adversarially Guided Self-Play</title>
<link href="https://hdl.handle.net/1721.1/163618" rel="alternate"/>
<author>
<name>Tucker, Mycal</name>
</author>
<author>
<name>Zhou, Yilun</name>
</author>
<author>
<name>Shah, Julie A</name>
</author>
<id>https://hdl.handle.net/1721.1/163618</id>
<updated>2026-04-14T03:28:41Z</updated>
<published>2022-08-26T00:00:00Z</published>
<summary type="text">Latent Space Alignment Using Adversarially Guided Self-Play
Tucker, Mycal; Zhou, Yilun; Shah, Julie A
We envision a world in which robots serve as capable partners in heterogeneous teams composed of other robots or humans. A crucial step towards such a world is enabling robots to learn to use the same representations as their partners; with a shared representation scheme, information may be passed among teammates. We define the problem of learning a fixed partner’s representation scheme as that of latent space alignment and propose metrics for evaluating the quality of alignment. While techniques from prior art in other fields may be applied to the latent space alignment problem, they often require interaction with partners during training time or large amounts of training data. We developed a technique, Adversarially Guided Self-Play (ASP), that trains agents to solve the latent space alignment problem with little training data and no access to their pre-trained partners. Simulation results confirmed that, despite using less training data, agents trained by ASP aligned better with other agents than agents trained by other techniques. Subsequent human-participant studies involving hundreds of Amazon Mechanical Turk workers showed how laypeople understood our machines enough to perform well on team tasks and anticipate their machine partner’s successes or failures.
</summary>
<dc:date>2022-08-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>7.02 / 10.702 Experimental Biology &amp; Communication, Spring 2005</title>
<link href="https://hdl.handle.net/1721.1/152546.2" rel="alternate"/>
<author>
<name>King, Jonathan</name>
</author>
<author>
<name>Guarente, Leonard</name>
</author>
<author>
<name>Steiner, Lisa</name>
</author>
<author>
<name>RajBhandary, Uttam</name>
</author>
<id>https://hdl.handle.net/1721.1/152546.2</id>
<updated>2025-11-17T22:08:38Z</updated>
<published>2005-06-01T00:00:00Z</published>
<summary type="text">7.02 / 10.702 Experimental Biology &amp; Communication, Spring 2005
King, Jonathan; Guarente, Leonard; Steiner, Lisa; RajBhandary, Uttam
This introductory biology laboratory course covers the application of experimental techniques in microbiology, biochemistry, cell and developmental biology. Emphasis is placed on the integration of factual knowledge with understanding of the design of the experiments and data analysis in order to prepare the students for future research projects. Development of skills critical for writing about scientific findings in modern biology is also covered in the Scientific Communications portion of the curriculum, 7.02CI. Additional Faculty Dr. Katherine Bacon Schneider Dr. Jean-Francois Hamel Ms. Deborah Kruzel Dr. Megan Rokop
</summary>
<dc:date>2005-06-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sensing Lights: The Challenges of Transforming Street Lights into an Urban Intelligence Platform</title>
<link href="https://hdl.handle.net/1721.1/163617" rel="alternate"/>
<author>
<name>Alvarez, Ricardo</name>
</author>
<author>
<name>Duarte, Fabio</name>
</author>
<author>
<name>Frenchman, Dennis</name>
</author>
<author>
<name>Ratti, Carlo</name>
</author>
<id>https://hdl.handle.net/1721.1/163617</id>
<updated>2025-11-11T03:09:31Z</updated>
<published>2022-08-22T00:00:00Z</published>
<summary type="text">Sensing Lights: The Challenges of Transforming Street Lights into an Urban Intelligence Platform
Alvarez, Ricardo; Duarte, Fabio; Frenchman, Dennis; Ratti, Carlo
The technological transformation behind intelligent infrastructure systems requires institutional and stakeholder realignment in their development. In this article, we evaluate the challenges for the production of smart infrastructure through an in-depth analysis of the development of smart street lighting strategies. We conduct surveys and semi-structured interviews with key stakeholders and industry leaders in public illumination, as well with public officials from cities in three continents to understand the related challenges they face, the strategies being developed to meet those challenges, and reflect on the lessons provided for the design, creation, and operation of public smart infrastructure systems. We find that there are key barriers. First, differences in vision that reflect a lack of fit between operators of the current infrastructure and the new possibilities afforded by digital technologies. Second, lack of policies that would help facilitate the adoption of these new technologies particularly in regards to privacy and data operationalization. Third, difficulties in public engagement. These barriers to innovation hinder the capacity of cities to maximize the possibilities as well as the social value of intelligent street lights as a future-proof platform for urban knowledge and urban applications.
</summary>
<dc:date>2022-08-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Intratumorally anchored cytokine therapy</title>
<link href="https://hdl.handle.net/1721.1/163616" rel="alternate"/>
<author>
<name>Wittrup, K Dane</name>
</author>
<author>
<name>Kaufman, Howard L</name>
</author>
<author>
<name>Schmidt, Michael M</name>
</author>
<author>
<name>Irvine, Darrell J</name>
</author>
<id>https://hdl.handle.net/1721.1/163616</id>
<updated>2025-11-11T03:09:36Z</updated>
<published>2022-06-02T00:00:00Z</published>
<summary type="text">Intratumorally anchored cytokine therapy
Wittrup, K Dane; Kaufman, Howard L; Schmidt, Michael M; Irvine, Darrell J
INTRODUCTION: On-target, off-tumor toxicity severely limits systemic dosing of cytokines and agonist antibodies for cancer. Intratumoral administration is increasingly being explored to mitigate this problem. Full exploitation of this mode of administration must include a mechanism for sustained retention of the drug; otherwise, rapid diffusion out of the tumor eliminates any advantage.&#13;
&#13;
AREAS COVERED: We focus here on strategies for anchoring immune agonists in accessible formats. Such anchoring may utilize extracellular matrix components, cell surface receptor targets, or exogenously administered particulate materials. Promising alternative strategies not reviewed here include slow release from the interior of a material depot, expression following local transfection, and conditional proteolytic activation of masked molecules.&#13;
&#13;
EXPERT OPINION: An effective mechanism for tissue retention is a critical component of intratumorally anchored cytokine therapy, as leakage leads to decreased tumor drug exposure and increased systemic toxicity. Matching variable drug release kinetics with receptor-mediated cellular uptake is an intrinsic requirement for the alternative strategies mentioned above. Bioavailability of an anchored form of the administered drug is key to obviating this balancing act.
</summary>
<dc:date>2022-06-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Generative Dialogue Framework and the Pursuit of Better Listening by Journalists: A Design-Centered Approach for More Constructive Conversations with Audiences</title>
<link href="https://hdl.handle.net/1721.1/163615" rel="alternate"/>
<author>
<name>Dimitrakopoulou, Dimitra</name>
</author>
<author>
<name>Lewis, Seth C</name>
</author>
<id>https://hdl.handle.net/1721.1/163615</id>
<updated>2025-11-11T03:09:21Z</updated>
<published>2022-05-18T00:00:00Z</published>
<summary type="text">The Generative Dialogue Framework and the Pursuit of Better Listening by Journalists: A Design-Centered Approach for More Constructive Conversations with Audiences
Dimitrakopoulou, Dimitra; Lewis, Seth C
This article introduces the Generative Dialogue Framework (GDF) and explores its potential as a pedagogical intervention, one that could help reimagine the future of engaged journalism by bringing design-thinking practices, creativity, and deep-listening modalities into play. The framework is developed through design thinking and builds around principles from the field of design. It uses virtual meeting technologies to organize small-group conversations, allows for creative and playful activities to help people share stories and feelings, and aims to create an ambient atmosphere of mutual understanding and co-creative problem-solving. With this article, we aspire to initiate a conversation around the value of “pollinating” journalism studies with concepts and principles from design thinking and facilitation so that journalists could become empowered to connect with their audiences with greater empathy and compassion and thereby surface diverse and rich lived experiences using more active and reflective listening skills. To test the framework’s potential for enhancing engaged journalism curricula, we collaborated with 17 journalism students at a U.S. university in a series of activities, from initial training on the platform to hosting a conversation using the GDF to ultimately producing a news story based on the insights acquired through this design-centered approach.
</summary>
<dc:date>2022-05-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Programmable Continuous Electrowetting of Liquid Metal for Reconfigurable Electronics</title>
<link href="https://hdl.handle.net/1721.1/163614" rel="alternate"/>
<author>
<name>Babatain, Wedyan</name>
</author>
<author>
<name>Park, Christine</name>
</author>
<author>
<name>Harraz, Deiaa M</name>
</author>
<author>
<name>Kilic Afsar, Ozgun</name>
</author>
<author>
<name>Honnet, Cedric</name>
</author>
<author>
<name>Lov, Sarah</name>
</author>
<author>
<name>Labrune, Jean‐Baptiste</name>
</author>
<author>
<name>Dickey, Michael D</name>
</author>
<author>
<name>Ishii, Hiroshi</name>
</author>
<id>https://hdl.handle.net/1721.1/163614</id>
<updated>2025-11-11T03:09:24Z</updated>
<published>2025-09-15T00:00:00Z</published>
<summary type="text">Programmable Continuous Electrowetting of Liquid Metal for Reconfigurable Electronics
Babatain, Wedyan; Park, Christine; Harraz, Deiaa M; Kilic Afsar, Ozgun; Honnet, Cedric; Lov, Sarah; Labrune, Jean‐Baptiste; Dickey, Michael D; Ishii, Hiroshi
Dynamic manipulation of the shape and position of liquid metal (LM), a conductive and deformable conductor, presents new opportunities for reconfigurable electronics, fluidic logic, and soft-actuation systems. This study combines continuous electrowetting (CEW) with electrochemical modulation of the interface of LM in electrolyte to achieve tunable and directional LM manipulation in 2D spaces. A key finding is that under a fixed external electric field, the LM moves in a direction that depends on its electrochemical potential. The LM potential is controlled using a substrate featuring patterns of laser-induced graphene (LIG) since it is non-wetting to LM and electrically conductive. This strategy enables a range of functionalities, including “valves” for on-demand LM control, LM droplet sorting, feedback sensing, and fluidic logic gates. The strategy can also control the motion of LM droplets across 2D spaces. Finally, it is utilized within a reconfigurable circuit platform where the LM functions as a dynamic interconnect for sequential activation, parallel switching, and self-healing circuits. By coupling the electrically-driven motion of LM and the versatility of LIG patterning, this work establishes a versatile framework for reconfigurable electronics, programmable fluidic systems, and adaptive systems.
</summary>
<dc:date>2025-09-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimization of CEST MRI Reporter Protein Design Using Cation‐Pi Networks</title>
<link href="https://hdl.handle.net/1721.1/163613" rel="alternate"/>
<author>
<name>Korenchan, David E.</name>
</author>
<author>
<name>French, Ethan J.</name>
</author>
<author>
<name>Runco, Emerenziana</name>
</author>
<author>
<name>Dhakan, Chetan B.</name>
</author>
<author>
<name>Yan, Jinwu</name>
</author>
<author>
<name>Nakashima, Hiroshi</name>
</author>
<author>
<name>McMahon, Michael T.</name>
</author>
<author>
<name>Gilad, Assaf A.</name>
</author>
<author>
<name>Farrar, Christian T.</name>
</author>
<id>https://hdl.handle.net/1721.1/163613</id>
<updated>2025-11-11T03:09:13Z</updated>
<published>2025-09-10T00:00:00Z</published>
<summary type="text">Optimization of CEST MRI Reporter Protein Design Using Cation‐Pi Networks
Korenchan, David E.; French, Ethan J.; Runco, Emerenziana; Dhakan, Chetan B.; Yan, Jinwu; Nakashima, Hiroshi; McMahon, Michael T.; Gilad, Assaf A.; Farrar, Christian T.
Nucleic acid-based therapeutics, such as oncolytic virotherapy or gene therapy, would benefit greatly from a reporter gene that induces endogenous production of a protein biomarker to noninvasively track the delivery, persistence, and spread with imaging. Several chemical exchange saturation transfer (CEST) reporter proteins detectable by magnetic resonance imaging (MRI) have been demonstrated to have high sensitivity. However, to date none can provide strong CEST contrast at a distinct resonance from that of endogenous proteins, limiting their specificity. We investigated proteins and peptides containing tyrosine (Tyr), tryptophan (Trp), and lysine (Lys) residues that demonstrate CEST contrast shifted far downfield (4–10 ppm) from water. Although Tyr, Trp, and Lys exchangeable protons are typically not detectable under physiological conditions, those in our tested molecules are, having exchange rates of 400–2500 s−1. The large chemical shift dispersion and rapid exchange rates are attributed to unique hydrogen bonding and cation-π network interactions. These discoveries set the stage for designing a stable reporter protein with high detection specificity and sensitivity that can facilitate the in vivo monitoring of viral and gene therapies using MRI.
</summary>
<dc:date>2025-09-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>3D‐Printed Mixed Ionic‐Electronic Conductive Polymer Composites for Long‐Term Bioelectronic Sensing</title>
<link href="https://hdl.handle.net/1721.1/163612" rel="alternate"/>
<author>
<name>Bagatella, Simone</name>
</author>
<author>
<name>Roh, Heejung</name>
</author>
<author>
<name>Cavallaro, Marco</name>
</author>
<author>
<name>Suriano, Raffaella</name>
</author>
<author>
<name>Levi, Marinella</name>
</author>
<author>
<name>Gumyusenge, Aristide</name>
</author>
<id>https://hdl.handle.net/1721.1/163612</id>
<updated>2025-11-11T03:09:34Z</updated>
<published>2025-09-07T00:00:00Z</published>
<summary type="text">3D‐Printed Mixed Ionic‐Electronic Conductive Polymer Composites for Long‐Term Bioelectronic Sensing
Bagatella, Simone; Roh, Heejung; Cavallaro, Marco; Suriano, Raffaella; Levi, Marinella; Gumyusenge, Aristide
Reliable, long-term monitoring of health data is becoming increasingly essential in modern healthcare. While computational and machine learning capabilities continue to advance, the lack of lightweight, conformable, and customizable hardware remains a key limitation. In the context of heart health, traditional electrocardiogram (ECG) electrodes are rigid and often uncomfortable for continuous wear. Existing soft electrodes tend to be either cost-prohibitive or unreliable over extended use. In this work, all-polymer, 3D-printed, highly stable, and conformable ECG patches are developed for long-term signal acquisition. Through material optimization, composite materials with electrical conductivity up to 1.7 S cm−1 are developed, maintaining over 85% of their conductivity after 60 days of exposure to open air. These materials also exhibit remarkable stretchability (strain at break up to 253%) and high mechanical strength (tensile strength of 25 MPa). The formulated inks are fully compatible with 3D material extrusion techniques, significantly reducing manufacturing costs. The printed electrodes are flexible, stretchable, and capable of recording high-quality ECG signals, performing comparably to state-of-the-art metal electrodes, even after more than a month of use-and-store in open air.
</summary>
<dc:date>2025-09-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>A causal inference framework to compare the effectiveness of life-sustaining ICU therapies—using the example of cancer patients with sepsis</title>
<link href="https://hdl.handle.net/1721.1/163611" rel="alternate"/>
<author>
<name>Matos, João</name>
</author>
<author>
<name>Struja, Tristan</name>
</author>
<author>
<name>Woite, Naira Link</name>
</author>
<author>
<name>Restrepo, David</name>
</author>
<author>
<name>Waschka, Andre Kurepa</name>
</author>
<author>
<name>Celi, Leo A</name>
</author>
<author>
<name>Sauer, Christopher M</name>
</author>
<id>https://hdl.handle.net/1721.1/163611</id>
<updated>2025-11-11T03:09:33Z</updated>
<published>2025-09-08T00:00:00Z</published>
<summary type="text">A causal inference framework to compare the effectiveness of life-sustaining ICU therapies—using the example of cancer patients with sepsis
Matos, João; Struja, Tristan; Woite, Naira Link; Restrepo, David; Waschka, Andre Kurepa; Celi, Leo A; Sauer, Christopher M
The rise in cancer patients could lead to an increase in intensive care units (ICUs) admissions. We explored differences in treatment practices and outcomes of invasive therapies between patients with sepsis with and without cancer. Adults from 2008 to 2019 admitted to the ICU for sepsis were extracted from the databases MIMIC-IV and eICU-CRD. Using Extreme Gradient Boosting, we estimated the odds for invasive mechanical ventilation (IMV) or vasopressors. Targeted maximum likelihood estimation (TMLE) models estimated treatment effects of IMV and vasopressors on in-hospital mortality and 28 hospital-free days. 58,988 adult septic patients were included, of which 6145 had cancer. In-hospital mortality was higher for cancer patients (30.3% vs. 16.1%). Patients with cancer had lower odds of receiving IMV (aOR [95%CI], 0.94 [0.90–0.97]); pronounced for hematologic patients (aOR 0.89 [0.84–0.93]). Odds for vasopressors were also lower for hematologic patients (aOR 0.89 [0.84–0.94]). TMLE models found IMV to be overall associated with higher in-hospital mortality for solid and hematological patients (ATE 3% [1%–5%], 6% [3%–9%], respectively), while vasopressors were associated with higher in-hospital mortality for patients with solid and metastatic cancer (ATE 6% [4%–8%], 3% [1%–6%], respectively). We utilized US-wide ICU data to estimate a relationship between mortality and the use of common therapies. With the exception of hematologic patients being less likely to receive IMV, we did not find differential treatment patterns. We did not demonstrate an average survival benefit for therapies, underscoring the need for a more granular analysis to identify subgroups who benefit from these interventions.
</summary>
<dc:date>2025-09-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>Accelerated Navigator for Rapid ∆B0 Field Mapping for Real-Time Shimming and Motion Correction of Human Brain MRI</title>
<link href="https://hdl.handle.net/1721.1/163610" rel="alternate"/>
<author>
<name>Jayadev, Nutandev Bikkamane</name>
</author>
<author>
<name>Stockmann, Jason</name>
</author>
<author>
<name>Frost, Robert</name>
</author>
<author>
<name>Arango, Nicolas</name>
</author>
<author>
<name>Chang, Yulin</name>
</author>
<author>
<name>van der Kouwe, André</name>
</author>
<author>
<name>Andronesi, Ovidiu C.</name>
</author>
<id>https://hdl.handle.net/1721.1/163610</id>
<updated>2025-11-11T03:09:28Z</updated>
<published>2025-09-04T00:00:00Z</published>
<summary type="text">Accelerated Navigator for Rapid ∆B0 Field Mapping for Real-Time Shimming and Motion Correction of Human Brain MRI
Jayadev, Nutandev Bikkamane; Stockmann, Jason; Frost, Robert; Arango, Nicolas; Chang, Yulin; van der Kouwe, André; Andronesi, Ovidiu C.
∆B0 shim optimization performed at the beginning of an MR scan is unable to correct for ∆B0 field inhomogeneities caused by patient motion or hardware instability during scans. Navigator-based methods have been demonstrated previously to be effective for motion and shim correction. The purpose of this work was to accelerate volumetric navigators to allow fast acquisition of the parent navigated sequence with short real-time feedback time and high spatial resolution of the ∆B0 field mapping. A GRAPPA-accelerated 3D dual-echo EPI vNav was implemented on a 3 T Prisma MRI scanner. Testing was performed on an anthropomorphic head phantom and 11 human participants. vNav-derived ∆B0 field maps with various spatial resolutions were compared to Cartesian-encoded gold-standard 3D gradient-echo ∆B0 field mapping. ∆B0 shimming was evaluated for the scanner's spherical harmonics shims and a custom-made AC/DC RF-receive/∆B0-shim array. The performance of dual-echo and single-echo accelerated navigators was compared for tracking and updating ∆B0 field maps during motion. Real-time motion and shim corrections for 2D MRI and 3D MRSI sequences were assessed in vivo with controlled head movement. Up to 8-fold acceleration of volumetric navigators (vNavs) significantly reduced geometric distortions and signal dropouts near air-tissue interfaces and metal implants. Acceleration allowed a flexible tradeoff between spatial resolution (2.5–7.5 mm) and acquisition time (242–1302 ms). Notably, accelerated high-resolution (5 mm) vNav was faster (378 ms) than unaccelerated low-resolution (7.5 mm) vNav (700 ms) and showed better agreement with 3D-GRE ∆B0 field mapping with 5.5 Hz RMSE, 1 Hz bias, and [−10%, +10%] confidence interval. Accelerated vNavs improved 3D MRSI and 2D MRI in real-time motion and shim correction applications. Advanced shimming with spherical harmonic and shim array showed superior ΔB0 correction, especially with joint shim optimization. GRAPPA-accelerated vNavs provide fast, robust, and high-quality ∆B0 field mapping and shimming over the whole-brain. The accelerated vNavs enable rapid correction of ∆B0 field inhomogeneities and faster acquisition of the navigated parent sequence. This methodology can be used for real-time motion and shim correction to enhance data quality in various MRI applications.
</summary>
<dc:date>2025-09-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wirelessly Powered Ingestible Capsule for Optical Stimulation of the Gastrointestinal Tract in Rodents</title>
<link href="https://hdl.handle.net/1721.1/163609" rel="alternate"/>
<author>
<name>Elsherif, Mohamed</name>
</author>
<author>
<name>El‐Din, Rawan Badr</name>
</author>
<author>
<name>Makhambetova, Zhansaya</name>
</author>
<author>
<name>Naser, Heba</name>
</author>
<author>
<name>Boitet, Maylis</name>
</author>
<author>
<name>Singh, Rahul</name>
</author>
<author>
<name>Oh, Keonghwan</name>
</author>
<author>
<name>Sukesan, Revathi</name>
</author>
<author>
<name>Ha, Sohmyung</name>
</author>
<author>
<name>Ramadi, Khalil B.</name>
</author>
<id>https://hdl.handle.net/1721.1/163609</id>
<updated>2025-11-11T03:09:29Z</updated>
<published>2025-08-20T00:00:00Z</published>
<summary type="text">Wirelessly Powered Ingestible Capsule for Optical Stimulation of the Gastrointestinal Tract in Rodents
Elsherif, Mohamed; El‐Din, Rawan Badr; Makhambetova, Zhansaya; Naser, Heba; Boitet, Maylis; Singh, Rahul; Oh, Keonghwan; Sukesan, Revathi; Ha, Sohmyung; Ramadi, Khalil B.
Optogenetics enables cell-specific activation and inhibition of neurons. The gut contains intricate networks of enteric and central neurons, but in vivo investigation is difficult due to its motile and harsh environment. This work reports an ingestible electronic capsule for non-invasive optical gut stimulation (ICOPS) in rodents. ICOPS is wirelessly powered via a transmitter coil, delivered by oral gavage, and excreted safely without obstruction within 20 h. The device integrates a micro-light-emitting diode (µLED) operating at 470 nm—a standard wavelength for channelrhodopsin-2 activation—together with a 460-turn ferrite-core coil and a shunt capacitor. Optimized circuits enable efficient power transfer at low frequencies (45–140 kHz), addressing weak coupling and misalignment. ICOPS operates effectively up to 14 cm longitudinally, 9 cm laterally, and at 75° rotation relative to the magnetic field. Specific absorption rate (SAR) analysis confirms exposure within safe occupational limits at 6 A and 45/63 kHz. In vivo validation using an in vivo imaging system (IVIS) and micro-computed tomography (µCT) confirms functionality and safety. ICOPS is the first rodent-scale ingestible capsule fabricated entirely in-house using 3D printing, without the need for cleanroom facilities, providing a compact, scalable platform for non-invasive optogenetic modulation of enteric circuits.
</summary>
<dc:date>2025-08-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>RBD-VLP Vaccines Adjuvanted with Alum or SWE Protect K18-hACE2 Mice against SARS-CoV-2 VOC Challenge</title>
<link href="https://hdl.handle.net/1721.1/163608" rel="alternate"/>
<author>
<name>Wong, Ting Y</name>
</author>
<author>
<name>Russ, Brynnan P</name>
</author>
<author>
<name>Lee, Katherine S</name>
</author>
<author>
<name>Miller, Olivia A</name>
</author>
<author>
<name>Kang, Jason</name>
</author>
<author>
<name>Cooper, Melissa</name>
</author>
<author>
<name>Winters, Michael T</name>
</author>
<author>
<name>Rodriguez-Aponte, Sergio A</name>
</author>
<author>
<name>Dalvie, Neil C</name>
</author>
<author>
<name>Johnston, Ryan S</name>
</author>
<author>
<name>Rader, Nathaniel A</name>
</author>
<author>
<name>Wong, Zeriel Y</name>
</author>
<author>
<name>Cyphert, Holly A</name>
</author>
<author>
<name>Martinez, Ivan</name>
</author>
<author>
<name>Shaligram, Umesh</name>
</author>
<author>
<name>Batwal, Saurabh</name>
</author>
<author>
<name>Lothe, Rakesh</name>
</author>
<author>
<name>Chandrasekaran, Rahul</name>
</author>
<author>
<name>Nagar, Gaurav</name>
</author>
<author>
<name>Rajurkar, Meghraj</name>
</author>
<author>
<name>Rao, Harish</name>
</author>
<author>
<name>Bevere, Justin R</name>
</author>
<author>
<name>Barbier, Mariette</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<author>
<name>Damron, F Heath</name>
</author>
<id>https://hdl.handle.net/1721.1/163608</id>
<updated>2026-04-14T03:27:16Z</updated>
<published>2022-08-15T00:00:00Z</published>
<summary type="text">RBD-VLP Vaccines Adjuvanted with Alum or SWE Protect K18-hACE2 Mice against SARS-CoV-2 VOC Challenge
Wong, Ting Y; Russ, Brynnan P; Lee, Katherine S; Miller, Olivia A; Kang, Jason; Cooper, Melissa; Winters, Michael T; Rodriguez-Aponte, Sergio A; Dalvie, Neil C; Johnston, Ryan S; Rader, Nathaniel A; Wong, Zeriel Y; Cyphert, Holly A; Martinez, Ivan; Shaligram, Umesh; Batwal, Saurabh; Lothe, Rakesh; Chandrasekaran, Rahul; Nagar, Gaurav; Rajurkar, Meghraj; Rao, Harish; Bevere, Justin R; Barbier, Mariette; Love, J Christopher; Damron, F Heath
The ongoing COVID-19 pandemic has contributed largely to the global&#13;
vaccine disparity. Development of protein subunit vaccines can help alleviate shortages of COVID-19 vaccines delivered to low-income countries. Here, we evaluated&#13;
the efficacy of a three-dose virus-like particle (VLP) vaccine composed of hepatitis B&#13;
surface antigen (HBsAg) decorated with the receptor binding domain (RBD) from the&#13;
Wuhan or Beta SARS-CoV-2 strain adjuvanted with either aluminum hydroxide (alum)&#13;
or squalene in water emulsion (SWE). RBD HBsAg vaccines were compared to the&#13;
standard two doses of Pfizer mRNA vaccine. Alum-adjuvanted vaccines were composed of either HBsAg conjugated with Beta RBD alone (b RBD HBsAg1Al) or a combination of both Beta RBD HBsAg and Wuhan RBD HBsAg (b/Wu RBD HBsAg1Al).&#13;
RBD vaccines adjuvanted with SWE were formulated with Beta RBD HBsAg (b RBD&#13;
HBsAg1SWE) or without HBsAg (b RBD1SWE). Both alum-adjuvanted RBD HBsAg vaccines generated functional RBD IgG against multiple SARS-CoV-2 variants of concern&#13;
(VOC), decreased viral RNA burden, and lowered inflammation in the lung against&#13;
Alpha or Beta challenge in K18-hACE2 mice. However, only b/Wu RBD HBsAg1Al was&#13;
able to afford 100% survival to mice challenged with Alpha or Beta VOC. Furthermore,&#13;
mice immunized with b RBD HBsAg1SWE induced cross-reactive neutralizing antibodies&#13;
against major VOC of SARS-CoV-2, lowered viral RNA burden in the lung and brain, and&#13;
protected mice from Alpha or Beta challenge similarly to mice immunized with Pfizer&#13;
mRNA. However, RBD1SWE immunization failed to protect mice from VOC challenge.&#13;
Our findings demonstrate that RBD HBsAg VLP vaccines provided similar protection profiles to the approved Pfizer mRNA vaccines used worldwide and may offer protection&#13;
against SARS-CoV-2 VOC.
</summary>
<dc:date>2022-08-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>On Monoid Algebras Having Every Nonempty Subset of N ≥ 2 as a Length Set</title>
<link href="https://hdl.handle.net/1721.1/163607" rel="alternate"/>
<author>
<name>Geroldinger, Alfred</name>
</author>
<author>
<name>Gotti, Felix</name>
</author>
<id>https://hdl.handle.net/1721.1/163607</id>
<updated>2026-04-14T03:17:05Z</updated>
<published>2025-04-12T00:00:00Z</published>
<summary type="text">On Monoid Algebras Having Every Nonempty Subset of N ≥ 2 as a Length Set
Geroldinger, Alfred; Gotti, Felix
We construct monoid algebras that satisfy the ascending chain condition on principal ideals and have the property that every nonempty subset of N ≥ 2 occurs as a length set.
</summary>
<dc:date>2025-04-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Psyche Multispectral Imager Investigation: Characterizing the Geology, Topography, and Multispectral Properties of a Metal-Rich World</title>
<link href="https://hdl.handle.net/1721.1/163606" rel="alternate"/>
<author>
<name>Bell, J. F.</name>
</author>
<author>
<name>Ravine, M. A.</name>
</author>
<author>
<name>Caplinger, M. A.</name>
</author>
<author>
<name>Schaffner, J. A.</name>
</author>
<author>
<name>Brylow, S. M.</name>
</author>
<author>
<name>Clark, M. J.</name>
</author>
<author>
<name>Peckham, D. A.</name>
</author>
<author>
<name>Otjens, P. T.</name>
</author>
<author>
<name>Price, G. J.</name>
</author>
<author>
<name>Rowell, T.</name>
</author>
<author>
<name>Ravine, J. W.</name>
</author>
<author>
<name>Laramee, J. D.</name>
</author>
<author>
<name>Juergens, R. C.</name>
</author>
<author>
<name>Morgan, W.</name>
</author>
<author>
<name>Parker, A. G.</name>
</author>
<id>https://hdl.handle.net/1721.1/163606</id>
<updated>2026-04-14T03:17:08Z</updated>
<published>2025-05-21T00:00:00Z</published>
<summary type="text">The Psyche Multispectral Imager Investigation: Characterizing the Geology, Topography, and Multispectral Properties of a Metal-Rich World
Bell, J. F.; Ravine, M. A.; Caplinger, M. A.; Schaffner, J. A.; Brylow, S. M.; Clark, M. J.; Peckham, D. A.; Otjens, P. T.; Price, G. J.; Rowell, T.; Ravine, J. W.; Laramee, J. D.; Juergens, R. C.; Morgan, W.; Parker, A. G.
The Psyche Multispectral Imager (“the Imager”) is a payload system designed to directly achieve or to indirectly enable the key scientific goals and optical navigation requirements of NASA’s Psyche mission, which will conduct the first up-close orbital investigation of the metal-rich Main Belt asteroid (16) Psyche. The Imager consists of a pair of block redundant cameras and electronics that are mounted inside the thermally controlled spacecraft body, with a view out the spacecraft −X panel that will be nadir-pointed during nominal asteroid orbital mapping operations. The two identical Camera Heads are connected to a separate Digital Electronics Assembly (DEA) box that interfaces to the spacecraft avionics and that provides power, commanding, data processing, and onboard image storage. The Imager system shares significant heritage with imaging instruments flown on the Mars Climate Orbiter, the Mars Science Laboratory and Mars 2020 rovers, and Juno. Each camera consists of a 1600 × 1200 photosensitive pixel charge-coupled device (CCD) detector and its associated electronics, a 9-position filter wheel assembly, a compact catadioptric f /2.9 telescope with a fixed focal length of 148 mm, and a sunshade to minimize stray and scattered light. The Imager CCD, filters, and optics enable broadband polychromatic (∼540 ± 250 nm) imaging plus narrowband imaging in 7 colors centered from 439 to 1015 nm. An additional neutral density filter enables protection of the CCD from direct solar illumination. Each camera has a field of view of 4.6° × 3.4° and an instantaneous field of view of 50 μrad/pixel that enables imaging of the asteroid at scales ranging from ∼35 m/pix from 700 km altitude to ∼4 m/pix at 75 km altitude. The primary camera (“Imager A”) is pointed along the spacecraft −X axis, and the backup camera (“Imager B”) is toed-out by 3.7° to potentially enable greater surface area coverage per unit time if both Imagers are operated simultaneously during some mission phases. Stereoscopic mapping is performed by observing the same surface regions with either camera over a range of off-nadir pointing angles.
</summary>
<dc:date>2025-05-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mechanobiochemical finite element model to analyze impact-loading-induced cell damage, subsequent proteoglycan loss, and anti-oxidative treatment effects in articular cartilage</title>
<link href="https://hdl.handle.net/1721.1/163605" rel="alternate"/>
<author>
<name>Kosonen, Joonas P.</name>
</author>
<author>
<name>Eskelinen, Atte S. A.</name>
</author>
<author>
<name>Orozco, Gustavo A.</name>
</author>
<author>
<name>Coleman, Mitchell C.</name>
</author>
<author>
<name>Goetz, Jessica E.</name>
</author>
<author>
<name>Anderson, Donald D.</name>
</author>
<author>
<name>Grodzinsky, Alan J.</name>
</author>
<author>
<name>Tanska, Petri</name>
</author>
<author>
<name>Korhonen, Rami K.</name>
</author>
<id>https://hdl.handle.net/1721.1/163605</id>
<updated>2026-04-14T03:17:03Z</updated>
<published>2025-05-10T00:00:00Z</published>
<summary type="text">Mechanobiochemical finite element model to analyze impact-loading-induced cell damage, subsequent proteoglycan loss, and anti-oxidative treatment effects in articular cartilage
Kosonen, Joonas P.; Eskelinen, Atte S. A.; Orozco, Gustavo A.; Coleman, Mitchell C.; Goetz, Jessica E.; Anderson, Donald D.; Grodzinsky, Alan J.; Tanska, Petri; Korhonen, Rami K.
Joint trauma often leads to articular cartilage degeneration and post-traumatic osteoarthritis (PTOA). Pivotal determinants include trauma-induced excessive tissue strains that damage cartilage cells. As a downstream effect, these damaged cells can trigger cartilage degeneration via oxidative stress, cell death, and proteolytic tissue degeneration. N-acetylcysteine (NAC) has emerged as an antioxidant capable of inhibiting oxidative stress, cell death, and cartilage degeneration post-impact. However, the temporal effects of NAC are not fully understood and remain difficult to assess solely by physical experiments. Thus, we developed a computational finite element analysis framework to simulate a drop-tower impact of cartilage in Abaqus, and subsequent oxidative stress-related cell damage, and NAC treatment upon cartilage proteoglycan content in Comsol Multiphysics, based on prior ex vivo experiments. Model results provide evidence that immediate NAC treatment can reduce proteoglycan loss by mitigating oxidative stress, cell death (improved proteoglycan biosynthesis), and enzymatic proteoglycan depletion. Our simulations also indicate that delayed NAC treatment may not inhibit cartilage proteoglycan loss despite reduced cell death after impact. These results enhance understanding of the temporal effects of impact-related cell damage and treatment that are critical for the development of effective treatments for PTOA. In the future, our modeling framework could increase understanding of time-dependent mechanisms of oxidative stress and downstream effects in injured cartilage and aid in developing better treatments to mitigate PTOA progression.
</summary>
<dc:date>2025-05-10T00:00:00Z</dc:date>
</entry>
<entry>
<title>The three-point energy correlator in the coplanar limit</title>
<link href="https://hdl.handle.net/1721.1/163604" rel="alternate"/>
<author>
<name>Gao, Anjie</name>
</author>
<author>
<name>Yang, Tong-Zhi</name>
</author>
<author>
<name>Zhang, Xiaoyuan</name>
</author>
<id>https://hdl.handle.net/1721.1/163604</id>
<updated>2026-04-14T03:24:21Z</updated>
<published>2025-08-04T00:00:00Z</published>
<summary type="text">The three-point energy correlator in the coplanar limit
Gao, Anjie; Yang, Tong-Zhi; Zhang, Xiaoyuan
Energy correlators are a type of observables that measure how energy is distributed across multiple detectors as a function of the angles between pairs of detectors. In this paper, we study the three-point energy correlator (EEEC) at lepton colliders in the three-particle near-to-plane (coplanar) limit. The leading-power contribution in this limit is governed by the three-jet (trijet) configuration. We introduce a new approach by projecting the EEEC onto the volume of the parallelepiped formed by the unit vectors aligned with three detected final-state particles. Analogous to the back-to-back limit of the two-point energy correlator probing the dijet configuration, the small-volume limit of the EEEC probes the trijet configuration. We derive a transverse momentum dependent (TMD) based factorization theorem that captures the soft and collinear logarithms in the coplanar limit, which enables us to achieve the next-to-next-to-next-to-leading logarithm (N3LL) resummation. To our knowledge, this is the first N3LL result for a trijet event shape. Additionally, we demonstrate that a similar factorization theorem can be applied to the fully differential EEEC in the three-particle coplanar limit, which provides a clean environment for studying different coplanar trijet shapes.
</summary>
<dc:date>2025-08-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Reduction of Plane Quartics and Cayley Octads</title>
<link href="https://hdl.handle.net/1721.1/163603" rel="alternate"/>
<author>
<name>van Bommel, Raymond</name>
</author>
<author>
<name>Docking, Jordan</name>
</author>
<author>
<name>Dokchitser, Vladimir</name>
</author>
<author>
<name>Lercier, Reynald</name>
</author>
<author>
<name>Lorenzo García, Elisa</name>
</author>
<id>https://hdl.handle.net/1721.1/163603</id>
<updated>2026-04-14T03:17:35Z</updated>
<published>2025-06-02T00:00:00Z</published>
<summary type="text">Reduction of Plane Quartics and Cayley Octads
van Bommel, Raymond; Docking, Jordan; Dokchitser, Vladimir; Lercier, Reynald; Lorenzo García, Elisa
We give a conjectural characterisation of the stable reduction of plane quartics over local fields in terms of their Cayley octads. This results in p-adic criteria that efficiently give the stable reduction type amongst the 42 possible types, and whether the reduction is hyperelliptic or not. These criteria are in the vein of the machinery of “cluster pictures” for hyperelliptic curves. We also construct explicit families of quartic curves that realise all possible stable types, against which we test these criteria. We give numerical examples that illustrate how to use these criteria in practice.
</summary>
<dc:date>2025-06-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>How Exceptional Is the Ear?</title>
<link href="https://hdl.handle.net/1721.1/163602" rel="alternate"/>
<author>
<name>Bergevin, Christopher</name>
</author>
<author>
<name>Freeman, Dennis M.</name>
</author>
<author>
<name>Coffin, Allison</name>
</author>
<id>https://hdl.handle.net/1721.1/163602</id>
<updated>2026-04-14T03:17:33Z</updated>
<published>2025-05-12T00:00:00Z</published>
<summary type="text">How Exceptional Is the Ear?
Bergevin, Christopher; Freeman, Dennis M.; Coffin, Allison
Studies of hearing often conclude that the ear is “remarkable” or that its performance is “exceptional.” Some common examples include the following: ▹  the ears of mammals are encased in the hardest bone in the body; ▹  the ear contains the most vascularized tissue in body; ▹  the ear has the highest resting potential in the body; ▹  ears have a unique “fingerprint”; ▹  the ear can detect signals below the thermal noise floor; and ▹  the ear is highly nonlinear (or highly linear, depending upon who you ask). Some claims hold up to further scrutiny, while others do not. Additionally, several claims hold for animals in one taxon, while others are shared across taxa. Most frequently, our sense of wonder results from the differences between ears as products of natural selection (over eons) and artificial systems as products of engineering design. Our goal in analyzing claims of remarkable or exceptional performance is to deepen our appreciation of these differences.
</summary>
<dc:date>2025-05-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Somato‐Cognitive Action Network in Focal Dystonia</title>
<link href="https://hdl.handle.net/1721.1/163601" rel="alternate"/>
<author>
<name>Wang, Yuchao</name>
</author>
<author>
<name>Huynh, Baothy</name>
</author>
<author>
<name>Ren, Jianxun</name>
</author>
<author>
<name>Chen, Mo</name>
</author>
<author>
<name>Zhang, Wei</name>
</author>
<author>
<name>Hu, Dan</name>
</author>
<author>
<name>Li, Shasha</name>
</author>
<author>
<name>Liu, Hesheng</name>
</author>
<author>
<name>Kimberley, Teresa J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163601</id>
<updated>2026-04-14T03:27:31Z</updated>
<published>2025-08-28T00:00:00Z</published>
<summary type="text">Somato‐Cognitive Action Network in Focal Dystonia
Wang, Yuchao; Huynh, Baothy; Ren, Jianxun; Chen, Mo; Zhang, Wei; Hu, Dan; Li, Shasha; Liu, Hesheng; Kimberley, Teresa J.
Background&#13;
The central pathology causing idiopathic focal dystonia remains unclear. The recently identified somato-cognitive action network (SCAN) has been implicated.&#13;
&#13;
Objective&#13;
We tested whether the effector-agnostic SCAN may constitute a central pathology shared across dystonia subtypes, whereas the effector-specific regions in the primary sensorimotor cortex may show distinct functional changes specific to the dystonic body part.&#13;
&#13;
Methods&#13;
We collected functional magnetic resonance imaging (MRI) from patients with focal dystonia (laryngeal dystonia [LD], N = 24; focal hand dystonia [FHD], N = 18) and healthy control participants (N = 21). Regions of interest were selected a priori within the basal ganglia-thalamo-cortical and cerebello-thalamo-cortical sensorimotor pathways. We investigated dystonia-dependent resting-state connectivity changes: between SCAN and related cortical regions, between cortical and noncortical regions, and among noncortical regions. Cortical network boundaries were individualized based on resting-state data. Separately, individualized hand and mouth/larynx regions were also generated from task-based MRI (finger-tapping and phonation, respectively) for comparison.&#13;
&#13;
Results&#13;
Both focal dystonia subtypes showed significant functional changes (P = 0.048 for LD, P = 0.017 for FHD) compared to controls, driven by SCAN's higher functional connectivity to task-based mouth/larynx region and concomitantly lower connectivity to the cingulo-opercular network. No significant subcortical or cerebellar changes were observed when LD and FHD were modeled as independent groups. However, exploratory analysis combining LD and FHD suggested a dystonia-dependent asynchronization between SCAN and sensorimotor cerebellum (P = 0.010) that may indicate a pathological rather than compensatory process.&#13;
&#13;
Conclusions&#13;
We demonstrate that SCAN is uniquely associated with focal dystonia dysfunction beyond the dystonic effector regions, offering insights into pathophysiology and treatments. © 2025 The Author(s). Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society.
</summary>
<dc:date>2025-08-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Practical and Optimal First-Order Method for Large-Scale Convex Quadratic Programming</title>
<link href="https://hdl.handle.net/1721.1/163600" rel="alternate"/>
<author>
<name>Lu, Haihao</name>
</author>
<author>
<name>Yang, Jinwen</name>
</author>
<id>https://hdl.handle.net/1721.1/163600</id>
<updated>2026-04-14T03:17:37Z</updated>
<published>2025-07-02T00:00:00Z</published>
<summary type="text">A Practical and Optimal First-Order Method for Large-Scale Convex Quadratic Programming
Lu, Haihao; Yang, Jinwen
Convex quadratic programming (QP) is an important class of optimization problem with wide applications in practice. The classic QP solvers are based on either simplex or barrier method, both of which suffer from the scalability issue because their computational bottleneck is solving linear equations. In this paper, we design and analyze a first-order method for QP, called restarted accelerated primal-dual hybrid gradient (rAPDHG), whose computational bottleneck is matrix-vector multiplication. We show that rAPDHG has a linear convergence rate to an optimal solution when solving QP, and the obtained linear rate is optimal among a wide class of primal-dual methods. Furthermore, we connect the linear rate with a sharpness constant of the KKT system of QP, which is a standard quantity to measure the hardness of a continuous optimization problem. Numerical experiments demonstrate that both restarts and acceleration can significantly improve the performance of the algorithm. Lastly, we present PDQP.jl, an open-source solver based on rAPDHG that can be run on both GPU and CPU. With a numerical comparison with SCS and OSQP on standard QP benchmark sets and large-scale synthetic QP instances, we demonstrate the effectiveness of rAPDHG for solving QP.
</summary>
<dc:date>2025-07-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>Effect of Iron Oxidation State on Solvent Extraction Scandium Extraction Process from Bauxite Residue and Life Cycle Assessment</title>
<link href="https://hdl.handle.net/1721.1/163599" rel="alternate"/>
<author>
<name>Braz, Vitor M. P.</name>
</author>
<author>
<name>Vaccari, Mentore</name>
</author>
<author>
<name>Espinosa, Denise C. R.</name>
</author>
<author>
<name>Tenório, Jorge A. S.</name>
</author>
<author>
<name>Botelho Junior, Amilton B.</name>
</author>
<id>https://hdl.handle.net/1721.1/163599</id>
<updated>2025-11-08T04:12:10Z</updated>
<published>2025-09-15T00:00:00Z</published>
<summary type="text">Effect of Iron Oxidation State on Solvent Extraction Scandium Extraction Process from Bauxite Residue and Life Cycle Assessment
Braz, Vitor M. P.; Vaccari, Mentore; Espinosa, Denise C. R.; Tenório, Jorge A. S.; Botelho Junior, Amilton B.
The extraction of Sc from bauxite residue (also known as red mud) is a promising but challenging secondary source due to the high Fe content, reducing efficiency. This study investigated the impact of Fe on Sc recovery by solvent extraction and evaluated the environmental impact of the process. A hydrometallurgical route was chosen for Sc extraction involving leaching with H2SO4 followed by solvent extraction with Cyanex 923 and Alamine 336. Synergistic combination of these extractants was tested to increase selectivity. Results showed that Cyanex 923 extracted nearly 100% of the Sc, but the co-extraction of Fe (25–80%) remained a significant challenge. A combination of Cyanex 923 and Alamine 336 improved Sc selectivity by minimizing Fe extraction at pH 0.5–1.0 (&lt; 20%). LCA indicated that leaching had the greatest environmental impact due to high energy consumption, while solvent extraction also contributed considerably because of kerosene use for dilution. The highest environmental impact is on ozone depletion in all steps of the process (leaching and solvent extraction). Synergistic use of Cyanex 923 and Alamine 336 is an efficient strategy for Sc extraction with low Fe co-extraction. Further optimizations are needed for the industrial scale, particularly concerning environmental impacts.
</summary>
<dc:date>2025-09-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Membrane Application in Hydrometallurgical Processing</title>
<link href="https://hdl.handle.net/1721.1/163598" rel="alternate"/>
<author>
<name>Botelho Junior, Amilton B.</name>
</author>
<author>
<name>Peng, Hong</name>
</author>
<author>
<name>Kim, Jihye</name>
</author>
<id>https://hdl.handle.net/1721.1/163598</id>
<updated>2026-04-14T03:26:21Z</updated>
<published>2025-02-18T00:00:00Z</published>
<summary type="text">Membrane Application in Hydrometallurgical Processing
Botelho Junior, Amilton B.; Peng, Hong; Kim, Jihye
Critical minerals are crucial for energy transition and for the success of commercialization of hydro power, wind turbines, and photovoltaic panels. The increasing demand puts pressure on the search for new sources, including new mining sites, tailings, and urban solid wastes. Membrane-based separation is well-stated for water desalination and wastewater treatment. Recently, the search for new processes to recover critical minerals in aqueous processing has shed light on its potential application. Electrodialysis has demonstrated a mature electrochemical separation technique, while supported liquid membranes have great potential for future developments. Membrane cost represents the main drawback, and for this reason new materials are under development including synthesis for a specific critical mineral, such as Li and rare earth elements.
</summary>
<dc:date>2025-02-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Review of The Rhetoricity of Philosophy: Audience in Perelman and Ricoeur After the Badiou-Cassin Debate</title>
<link href="https://hdl.handle.net/1721.1/163597" rel="alternate"/>
<author>
<name>Schiappa, Edward</name>
</author>
<id>https://hdl.handle.net/1721.1/163597</id>
<updated>2025-11-08T04:12:21Z</updated>
<published>2025-09-06T00:00:00Z</published>
<summary type="text">Review of The Rhetoricity of Philosophy: Audience in Perelman and Ricoeur After the Badiou-Cassin Debate
Schiappa, Edward
In this well-written and superbly researched book, Blake D. Scott uses the “debate” between Alain Badiou and Barbara Cassin as a point of departure to revisit the longstanding tension between philosophy and rhetoric. Through substantial exegeses of the work of Chaïm Perelman and Lucie Olbrechts‑Tyteca, as well as selected writings by Paul Ricœur, Scott rejects the conventional view that philosophy and rhetoric are separate disciplines. He argues instead for their asymmetrical interdependence: rhetoric is constitutive of philosophical practice. Central to his thesis is the concept of rhetoricity—the rhetorical dimension inherent in all discourse by virtue of the human “rhetorical capacity,” our ability to reflect on audiences and the potential for persuasion.
</summary>
<dc:date>2025-09-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Household Portfolios and Retirement Saving over the Life Cycle</title>
<link href="https://hdl.handle.net/1721.1/163596" rel="alternate"/>
<author>
<name>PARKER, JONATHAN A</name>
</author>
<author>
<name>SCHOAR, ANTOINETTE</name>
</author>
<author>
<name>COLE, ALLISON</name>
</author>
<author>
<name>SIMESTER, DUNCAN</name>
</author>
<id>https://hdl.handle.net/1721.1/163596</id>
<updated>2026-04-14T03:27:30Z</updated>
<published>2025-08-12T00:00:00Z</published>
<summary type="text">Household Portfolios and Retirement Saving over the Life Cycle
PARKER, JONATHAN A; SCHOAR, ANTOINETTE; COLE, ALLISON; SIMESTER, DUNCAN
Using account-level data on millions of U.S. middle-class investors over 2006 to 2018, we characterize the share of investable wealth that they hold in the stock market over their working lives. Relative to the 1990s, this share has both risen by 10% and become age-dependent. The Pension Protection Act (PPA)—which allowed target date funds (TDFs) to be default options in retirement plans—played an important role: younger (older) workers starting at a firm after TDFs became the default option post-PPA invested more (less) in stocks, in line with the TDF glidepath. In contrast, contribution rates changed little following the PPA.
</summary>
<dc:date>2025-08-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>How Many Americans Work Remotely? A Survey of Surveys and Their Measurement Issues</title>
<link href="https://hdl.handle.net/1721.1/163595" rel="alternate"/>
<author>
<name>Brynjolfsson, Erik</name>
</author>
<author>
<name>Horton, John</name>
</author>
<author>
<name>Makridis, Christos</name>
</author>
<author>
<name>Mas, Alex</name>
</author>
<author>
<name>Ozimek, Adam</name>
</author>
<author>
<name>Rock, Daniel</name>
</author>
<author>
<name>TuYe, Hong‐Yi</name>
</author>
<id>https://hdl.handle.net/1721.1/163595</id>
<updated>2026-04-14T03:27:15Z</updated>
<published>2025-10-28T00:00:00Z</published>
<summary type="text">How Many Americans Work Remotely? A Survey of Surveys and Their Measurement Issues
Brynjolfsson, Erik; Horton, John; Makridis, Christos; Mas, Alex; Ozimek, Adam; Rock, Daniel; TuYe, Hong‐Yi
Remote work surged during the COVID-19 pandemic, but estimates vary widely. To address this, we field the Remote Life Survey (RLS), a nationally representative survey. In October 2020, we find that 31.6% of continuously employed workers always worked from home (WFH), and 21.9% did so sometimes or rarely, totaling 53.5%. We compare our results with government surveys and assess four factors contributing to measurement differences: (a) web versus mail-based respondents, (b) inclusion of self-employed workers, (c) occupation mix, and (d) exclusion of pre-pandemic remote workers. We find that (d) explains most of the discrepancy between the Current Population Survey (CPS) and other measures. Policymakers and researchers relying on CPS data should note that it may underestimate remote work prevalence by up to 25 percentage points. Our preferred estimates suggest that about half of the U.S. workforce worked remotely at least one day per week as of December 2020.
</summary>
<dc:date>2025-10-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Impact of Internal Variability on Benchmarking Deep Learning Climate Emulators</title>
<link href="https://hdl.handle.net/1721.1/163594" rel="alternate"/>
<author>
<name>Lütjens, Björn</name>
</author>
<author>
<name>Ferrari, Raffaele</name>
</author>
<author>
<name>Watson‐Parris, Duncan</name>
</author>
<author>
<name>Selin, Noelle E</name>
</author>
<id>https://hdl.handle.net/1721.1/163594</id>
<updated>2026-04-14T03:27:33Z</updated>
<published>2025-08-26T00:00:00Z</published>
<summary type="text">The Impact of Internal Variability on Benchmarking Deep Learning Climate Emulators
Lütjens, Björn; Ferrari, Raffaele; Watson‐Parris, Duncan; Selin, Noelle E
Full-complexity Earth system models (ESMs) are computationally very expensive, limiting their use in exploring the climate outcomes of multiple emission pathways. More efficient emulators that approximate ESMs can directly map emissions onto climate outcomes, and benchmarks are being used to evaluate their accuracy on standardized tasks and data sets. We investigate a popular benchmark in data-driven climate emulation, ClimateBench, on which deep learning-based emulators are currently achieving the best performance. We compare these deep learning emulators with a linear regression-based emulator, akin to pattern scaling, and show that it outperforms the incumbent 100M-parameter deep learning foundation model, ClimaX, on 3 out of 4 regionally resolved climate variables, notably surface temperature and precipitation. While emulating surface temperature is expected to be predominantly linear, this result is surprising for emulating precipitation. Precipitation is a much more noisy variable, and we show that deep learning emulators can overfit to internal variability noise at low frequencies, degrading their performance in comparison to a linear emulator. We address the issue of overfitting by increasing the number of climate simulations per emission pathway (from 3 to 50) and updating the benchmark targets with the respective ensemble averages from the MPI-ESM1.2-LR model. Using the new targets, we show that linear pattern scaling continues to be more accurate on temperature, but can be outperformed by a deep learning-based technique for emulating precipitation. We publish our code and data at https://github.com/blutjens/climate-emulator.
</summary>
<dc:date>2025-08-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Don’t Just Send in the Chiefs</title>
<link href="https://hdl.handle.net/1721.1/163593" rel="alternate"/>
<author>
<name>Wright, Randall S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163593</id>
<updated>2026-04-14T03:27:14Z</updated>
<published>2022-04-19T00:00:00Z</published>
<summary type="text">Don’t Just Send in the Chiefs
Wright, Randall S.
A few years ago, my wife and I visited the aircraft carrierMidway on a vacation to San Diego. The Midway is one ofthe largest aircraft carriers ever built. It was to be deployedin World War II, but the war ended before the Midway couldbe commissioned. It was the largest ship in the US Navy until1955 and the first aircraft carrier too big to pass through thePanama Canal. The ship was in service for 47 years, includingthe Vietnam War and Operation Desert Storm. It’s now afloating museum (Wikimedia Foundation 2022).
</summary>
<dc:date>2022-04-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for the year ended June 30, 2025, Center for Clinical and Translational Research</title>
<link href="https://hdl.handle.net/1721.1/163592" rel="alternate"/>
<author>
<name>Edelman, Elazer</name>
</author>
<id>https://hdl.handle.net/1721.1/163592</id>
<updated>2025-11-07T03:14:39Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for the year ended June 30, 2025, Center for Clinical and Translational Research
Edelman, Elazer
This report contains the following sections:  Goals, Objectives and Priorities; Funding; Personnel; and Accomplishments.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, Department of Architecture</title>
<link href="https://hdl.handle.net/1721.1/163591" rel="alternate"/>
<author>
<name>de Monchaux, Nicholas</name>
</author>
<id>https://hdl.handle.net/1721.1/163591</id>
<updated>2025-11-07T03:14:38Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, Department of Architecture
de Monchaux, Nicholas
This report contains the following sections: Priorities (Climate, Community, and Design); Administration; Finance; and Staff and Transitions.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Updated measurement of CP violation and polarisation in B s 0 → J / ψ K ¯ ∗ 892 0 decays</title>
<link href="https://hdl.handle.net/1721.1/163590" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<author>
<name>The LHCb Collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163590</id>
<updated>2026-04-14T03:27:19Z</updated>
<published>2025-10-21T00:00:00Z</published>
<summary type="text">Updated measurement of CP violation and polarisation in B s 0 → J / ψ K ¯ ∗ 892 0 decays
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.; The LHCb Collaboration
A time-integrated angular analysis of the decay B s 0 → J / ψ K ¯ ∗ 892 0 , with J/ψ → μ+μ− and K ¯ ∗ 892 0 → K − π + , is presented. The analysis employs a sample of proton-proton collision data collected by the LHCb experiment during 2015–2018 at a centre-of-mass energy of 13 TeV, corresponding to an integrated luminosity of 6 fb−1. A simultaneous maximum-likelihood fit is performed to the angular distributions in bins of the K−π+ mass. This fit yields measurements of the CP-averaged polarisation fractions and CP asymmetries for the P-wave component of the K−π+ system. The longitudinal and parallel polarisation fractions are determined to be f0 = 0.534 ± 0.012 ± 0.009 and f|| = 0.211 ± 0.014 ± 0.005, respectively, where the first uncertainty is statistical and the second is systematic. The CP asymmetries are measured with 3–7% precision and are found to be consistent with zero. These measurements, along with an updated determination of the branching fraction relative to the B0 → J/ψK*0 decay, are combined with previous LHCb results, providing the most precise values for these observables to date.
</summary>
<dc:date>2025-10-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurements of inclusive and differential Higgs boson production cross sections at √s = 13.6 TeV in the H → γγ decay channel</title>
<link href="https://hdl.handle.net/1721.1/163589" rel="alternate"/>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Makarenko, V.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Benato, L.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Giordano, C.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<author>
<name>Schieck, J.</name>
</author>
<author>
<name>The CMS Collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163589</id>
<updated>2026-04-14T03:24:58Z</updated>
<published>2025-09-08T00:00:00Z</published>
<summary type="text">Measurements of inclusive and differential Higgs boson production cross sections at √s = 13.6 TeV in the H → γγ decay channel
Hayrapetyan, A.; Makarenko, V.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Benato, L.; Bergauer, T.; Damanakis, K.; Dragicevic, M.; Giordano, C.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.; Schieck, J.; The CMS Collaboration
Inclusive and differential cross sections for Higgs boson production in protonproton collisions at a centre-of-mass energy of 13.6 TeV are measured using data collected&#13;
with the CMS detector at the LHC in 2022, corresponding to an integrated luminosity of&#13;
34.7 fb−1&#13;
. Events with the diphoton final state are selected, and the measured inclusive&#13;
fiducial cross section is σfid = 74±11 (stat)+5&#13;
−4&#13;
(syst) fb, in agreement with the standard model&#13;
prediction of 67.8 ± 3.8 fb. Differential cross sections are measured as functions of several&#13;
observables: the Higgs boson transverse momentum and rapidity, the number of associated&#13;
jets, and the transverse momentum of the leading jet in the event. Within the uncertainties,&#13;
the differential cross sections agree with the standard model predictions.
</summary>
<dc:date>2025-09-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>On the structure of multiple stable equilibria in competitive ecological systems</title>
<link href="https://hdl.handle.net/1721.1/163588" rel="alternate"/>
<author>
<name>Taylor, Washington</name>
</author>
<author>
<name>O’Dwyer, James</name>
</author>
<id>https://hdl.handle.net/1721.1/163588</id>
<updated>2026-04-14T03:24:59Z</updated>
<published>2025-10-06T00:00:00Z</published>
<summary type="text">On the structure of multiple stable equilibria in competitive ecological systems
Taylor, Washington; O’Dwyer, James
For some ecological systems with a large pool of possible species, there can be multiple stable equilibria with different species composition. Natural or anthropogenic disruption can induce a shift between different such equilibria. While some work has been done on ecological systems with multiple equilibria, there is no general theory governing the distribution of equilibria or characterizing the basins of attraction of different equilibria. This article addresses these questions in a simple class of Lotka-Volterra models. We focus on competitive systems of species on a niche axis with multiple equilibria. We find that basins of attraction are generally larger for equilibria with greater biomass; in many cases, the basin of attraction size scales roughly exponentially with the net biomass of equilibria. This is illustrated in two ecologically relevant limits. In a continuous limit with species spaced arbitrarily closely on the niche axis, equilibria with different numbers of species provide a new perspective on the notion of limiting similarity. In another limit, akin to a statistical mechanical model, the niche axis becomes infinite while the range of interactions remains fixed; in this limit, we prove the exponential relation between basin size and biomass using the Markov chain central limit theorem.
</summary>
<dc:date>2025-10-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurement of branching fractions and CP asymmetries in Λ b 0 Ξ b 0 → p K S 0 h − decays</title>
<link href="https://hdl.handle.net/1721.1/163587" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<author>
<name>The LHCb Collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163587</id>
<updated>2026-04-14T03:27:29Z</updated>
<published>2025-10-21T00:00:00Z</published>
<summary type="text">Measurement of branching fractions and CP asymmetries in Λ b 0 Ξ b 0 → p K S 0 h − decays
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.; The LHCb Collaboration
A study of Λ b 0 and Ξ b 0 baryon decays to the final states p K S 0 π − and p K S 0 K − is performed using pp collision data collected by the LHCb experiment, corresponding to an integrated luminosity of 9 fb−1. The decays Λ b 0 → p K S 0 K − and Ξ b 0 → p K S 0 K − are observed for the first time, with significances reaching eight standard deviations. The branching fractions and integrated CP asymmetries are measured for the Λ b 0 → p K S 0 π − , Λ b 0 → p K S 0 K − , and Ξ b 0 → p K S 0 K − decays. For the decay Λ b 0 → p K S 0 π − , the CP asymmetries are measured in different regions of the Dalitz plot. No evidence of CP violation is observed.
</summary>
<dc:date>2025-10-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>(Not so) universal literacy screening: a survey of educators reveals variability in implementation</title>
<link href="https://hdl.handle.net/1721.1/163586" rel="alternate"/>
<author>
<name>Ozernov-Palchik, Ola</name>
</author>
<author>
<name>Elizee, Zoe</name>
</author>
<author>
<name>Catania, Fabio</name>
</author>
<author>
<name>Hacikamiloglu, Meral</name>
</author>
<author>
<name>Shattuck-Hufnagel, Stefanie</name>
</author>
<author>
<name>Petscher, Yaacov</name>
</author>
<author>
<name>Ghosh, Satrajit</name>
</author>
<author>
<name>Gabrieli, John D. E.</name>
</author>
<id>https://hdl.handle.net/1721.1/163586</id>
<updated>2026-04-14T03:27:20Z</updated>
<published>2025-10-29T00:00:00Z</published>
<summary type="text">(Not so) universal literacy screening: a survey of educators reveals variability in implementation
Ozernov-Palchik, Ola; Elizee, Zoe; Catania, Fabio; Hacikamiloglu, Meral; Shattuck-Hufnagel, Stefanie; Petscher, Yaacov; Ghosh, Satrajit; Gabrieli, John D. E.
Currently, most states in the United States have enacted legislation mandating universal screening for literacy risk in kindergarten through 3rd grade. However, the degree to which these policies translate into consistent, high-quality screening practices remains unclear. In this survey study, we collected responses from a diverse sample of K–3 educators (N = 251) across 39 states, representing varied school types, professional roles, and experience levels, to examine the real-world implementation of universal screening. Guided by the Exploration, Preparation, Implementation, and Sustainment (EPIS) framework, we analyzed quantitative and qualitative data to identify real-world factors that could impede the fidelity and effectiveness of screening implementation. We found substantial variability across multiple dimensions of literacy screening implementation. Educators described considerable variation in screener selection, administration practices, testing environments, training quality, scoring accuracy, and the use of results to guide intervention. Notably, many indicated insufficient training and professional development, expressing uncertainty about administering and interpreting screeners, particularly for English language learners. Nearly half also reported the absence of systematic procedures for developing intervention plans, suggesting that many students identified as at risk do not receive appropriate follow-up support. These implementation challenges occurred despite widespread recognition among educators of screening’s importance for early literacy intervention. Educators from lower-socioeconomic status schools reported significantly greater time burdens in conducting screenings and more technology-related challenges compared to their higher-SES counterparts. Without systematic improvements to implementation support and training, current screening initiatives may fail to achieve their intended goal of early identification and intervention for struggling readers.
</summary>
<dc:date>2025-10-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, Institute Office of Communications</title>
<link href="https://hdl.handle.net/1721.1/163585" rel="alternate"/>
<author>
<name>Ironside, Alfred</name>
</author>
<id>https://hdl.handle.net/1721.1/163585</id>
<updated>2025-11-07T03:14:31Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, Institute Office of Communications
Ironside, Alfred
This report contains the following sections: Brand, Digital, and Internal Communications; Media Relations and Crisis Communications; Strategic Communications and MIT News; MIT Copytech; and IOC Staff News.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, Laboratory for Nuclear Science</title>
<link href="https://hdl.handle.net/1721.1/163584" rel="alternate"/>
<author>
<name>Wyslouch, Boleslaw</name>
</author>
<id>https://hdl.handle.net/1721.1/163584</id>
<updated>2025-11-07T03:14:40Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, Laboratory for Nuclear Science
Wyslouch, Boleslaw
This report contains the following sections: Experimental Nuclear Physics, Experimental Particle Physics, Institute for Artificial Intelligence and Fundamental Interactions, Theoretical Particle and Nuclear Physics, MIT-Bates Research and Engineering Center, MIT Central Machine Shop, and Education.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, Institute Events</title>
<link href="https://hdl.handle.net/1721.1/163583" rel="alternate"/>
<author>
<name>Johnson, Ted E.</name>
</author>
<id>https://hdl.handle.net/1721.1/163583</id>
<updated>2025-11-07T03:14:37Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, Institute Events
Johnson, Ted E.
This report contains the following sections: Events, Institute Events Office, Community Services Office, and Institute Events Personnel.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of a Compton imager setup</title>
<link href="https://hdl.handle.net/1721.1/163582" rel="alternate"/>
<author>
<name>Arya, Anuraag</name>
</author>
<author>
<name>Bilkhu, Harmanjeet S.</name>
</author>
<author>
<name>Vishwakarma, Sandeep</name>
</author>
<author>
<name>Belatikar, Hrishikesh</name>
</author>
<author>
<name>Bhalerao, Varun</name>
</author>
<author>
<name>Ghodgaonkar, Abhijeet</name>
</author>
<author>
<name>Koyande, Jayprakash G.</name>
</author>
<author>
<name>Marathe, Aditi</name>
</author>
<author>
<name>Mithun, N. P. S.</name>
</author>
<author>
<name>Narang, Sanjoli</name>
</author>
<author>
<name>Nimbalkar, Sudhanshu</name>
</author>
<author>
<name>Page, Pranav</name>
</author>
<author>
<name>Palit, Sourav</name>
</author>
<author>
<name>Patel, Arpit</name>
</author>
<author>
<name>Shetye, Amit</name>
</author>
<author>
<name>Tallur, Siddharth</name>
</author>
<id>https://hdl.handle.net/1721.1/163582</id>
<updated>2025-11-07T03:12:26Z</updated>
<published>2025-11-04T00:00:00Z</published>
<summary type="text">Development of a Compton imager setup
Arya, Anuraag; Bilkhu, Harmanjeet S.; Vishwakarma, Sandeep; Belatikar, Hrishikesh; Bhalerao, Varun; Ghodgaonkar, Abhijeet; Koyande, Jayprakash G.; Marathe, Aditi; Mithun, N. P. S.; Narang, Sanjoli; Nimbalkar, Sudhanshu; Page, Pranav; Palit, Sourav; Patel, Arpit; Shetye, Amit; Tallur, Siddharth
Hard X-ray photons with energies in the range of hundreds of keV typically undergo Compton scattering when they are incident on a detector. In this process, an incident photon deposits a fraction of its energy at the point of incidence and continues onwards with a change in direction that depends on the amount of energy deposited. By using a pair of detectors to detect the point of incidence and the direction of the scattered photon, we can calculate the scattering direction and angle. The position of a source in the sky can be reconstructed using many Compton photon pairs from a source. We demonstrate this principle in the laboratory by using a pair of Cadmium Zinc Telluride (CZT) detectors sensitive in the energy range of 20–200 keV, similar to those used in AstroSat/CZT Imager (CZTI). The laboratory setup consists of two detectors placed perpendicular to each other in a lead-lined box. The detectors are read out by a custom-programmed Xilinx PYNQ-Z2 FPGA board, and data are then transferred to a personal computer (PC). There are two key updates from CZTI: the detectors are read concurrently rather than serially, and the time resolution has been improved from 20 to 7.5  μ s. We irradiated the detectors with a collimated 133 Ba source and identified Compton scattering events for the 356 keV line. We run a Compton reconstruction algorithm to correctly infer the location of the source in the detector frame, with a location-dependent angular response measure of 16 ∘ –30 ∘ . This comprises a successful technology demonstration for a Compton imaging camera in the hard X-ray regime. We present the details of our setup, the data acquisition process, and software algorithms, and showcase our results. We also quantify the limitations of this setup and discuss ways of improving the performance in future experiments.
</summary>
<dc:date>2025-11-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sanctuary for Who?</title>
<link href="https://hdl.handle.net/1721.1/163581" rel="alternate"/>
<author>
<name>Salazar, Juan</name>
</author>
<id>https://hdl.handle.net/1721.1/163581</id>
<updated>2025-11-06T03:07:47Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Sanctuary for Who?
Salazar, Juan
Philadelphia, often recognized as the poorest major city in the United States, became a Sanctuary City in 2014. The designation committed the region to policies limiting cooperation with federal law enforcement in the persecution of undocumented communities. Policies have ranged from refusing to detain individuals without judicial warrants to prohibiting Immigration and Customs Enforcement (ICE) from accessing municipal databases or facilities for detention purposes. At the community level, the notion of the Sanctuary City sought to promote organizing against unlawful persecution of residents. Over the past eleven years, however, the framework of protection it promised has faltered under mounting federal pressure. The Sanctuary City's symbolic authority and limited scope have failed to shield residents from persecution or restrict ICE's intensifying operations within the area. In 2019, Juntos, the city's foremost immigrant advocacy organization, criticized Philadelphia's Sanctuary status as inadequate. Cited the ongoing persecution of its communities and the declining quality of life for all residents, the organization urged the city to abandon the term "Sanctuary." They instead petition the city to focus instead on meaningfully protecting all residents of Philadelphia, stating, "Let us instead work together to build the kind of city we all want to live in." Junto's critique forms the basis of this thesis, using it as an invitation to reimagine the Sanctuary City as a shift from a policy framework toward a general ethic and design sensibility. This thesis proposes that Philadelphia's crux, like all cities, lies in its ability to sustain communities' pursuit of a dignified life. As a primary agent in the formation of cities, the architect must then make this struggle their own and deploy the tools of their discipline to protect life and inspire dignity. By framing Philadelphia as a city shaped by deindustrialization, disinvestment, and policing, the thesis explores how architecture can respond to these forces by reviving the city's industrial character and establishing new boundaries able to safeguard community rights. Integrating legal, spatial, and semantic insights from federal authorities' rules of engagement will provide novel typologies and programs for the city that address its systemic inequities while fostering environments where life and dignity can flourish. By inscribing meaningful boundaries, and re-equipping the city to make for itself, the thesis suggests architecture becomes a tool for collective protection and urban regeneration.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Structural analysis at scale: Computational modeling of embodied carbon in complex floor layouts</title>
<link href="https://hdl.handle.net/1721.1/163580" rel="alternate"/>
<author>
<name>Hirt, Natasha K.</name>
</author>
<id>https://hdl.handle.net/1721.1/163580</id>
<updated>2025-11-06T03:07:03Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Structural analysis at scale: Computational modeling of embodied carbon in complex floor layouts
Hirt, Natasha K.
To meet the needs of growing populations, rates of new construction are increasing at a record pace worldwide. The built environment, already one of the single largest contributors to global CO₂e emissions, will become a significant environmental challenge in the coming decades. To mitigate the anticipated environmental impact of future construction, we need to rethink how we build.&#13;
&#13;
One strategy, which is the subject of this work, is improving the material efficiency of flexural systems like floors. Floors are among the most materially wasteful structural components in buildings, and while decades of research have explored optimal floor system design, the complexity of proposed solutions has limited their practical implementation. Furthermore, the industrial tools available to structural designers do not lend themselves to flexible experimentation or large-scale analysis. As a result, most flexural systems today rely on approximations and rules of thumb rather than mathematically optimal designs, data-driven decision making, or iterative design processes.&#13;
&#13;
This thesis bridges the gap between practical engineering, material efficiency, and design freedom. It presents novel, code-compliant tools for the computational analysis and optimization of flat slabs supported by a network, or grillage, of beams, using a model system of reinforced concrete supported by steel W-sections. The method is used to perform a large-scale analysis of 24,192 unique combinations of beam topologies and assembly design decisions. The results of this analysis find improvements in structural embodied carbon of up to 53.4% over the business-as-usual design case, and also yield generalizable takeaways about the key factors influencing material efficiency in floor slabs. &#13;
&#13;
One of the advantages of the method is its flexibility in taking on a range of complex design challenges. These are presented as extensions to the method, and include designing with a constrained inventory for a series of real-world case studies, and automatically deriving novel structural geometries from dense ground structures.&#13;
&#13;
The method and results shown in this thesis expand the range of analysis tools that engineers have access to, enabling a wide range of creative designs and explicitly linking design decisions to environmental impact.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Inscrutability: An Epistemological Experiment</title>
<link href="https://hdl.handle.net/1721.1/163579" rel="alternate"/>
<author>
<name>Huang, Brian Hudson</name>
</author>
<id>https://hdl.handle.net/1721.1/163579</id>
<updated>2025-11-06T03:07:52Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Inscrutability: An Epistemological Experiment
Huang, Brian Hudson
Through four different projects, this thesis explores the idea of dimensions of representation, a concept introduced by 20th century French philosopher Michel Foucault in his book The Order of Things. Foucault argues that the Classical episteme, which Foucault defines as the discourse surrounding knowledge-making that lasted from the 17th century to the 19th century, was determined by the idea of dimensions of representations. Dimensions of representations states that during the Classical episteme, knowledge was formulated by representations of the external world, such as through systems of classification, ordering, and relations, rather than through resemblance. The first project, Holes in the Sieve (2023) will address the problematics of classification through a infamous case in the history of paleoanthropology: the Piltdown Man. The second project, Contrapposto in Space (2024) addresses how representation has been instrumentalized in technoscience through space research. Finally, the last two projects, the Poem Box (2024) and Micropoetry (2025) posit a way forward at the limits of representation by engaging with semiotic theory. By engaging with language games, poetry opens up the possibility to deny the position of being knowable, allowing one to disappear into inscrutability.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Koalisi Lahan–Gambut: Assembling Peat–Land Futures in Kalimantan</title>
<link href="https://hdl.handle.net/1721.1/163578" rel="alternate"/>
<author>
<name>El Haq, Haidar</name>
</author>
<id>https://hdl.handle.net/1721.1/163578</id>
<updated>2025-11-06T03:07:28Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Koalisi Lahan–Gambut: Assembling Peat–Land Futures in Kalimantan
El Haq, Haidar
Throughout Indonesia’s colonial and postcolonial histories, the peatlands of Kalimantan have been not only politically contested spaces but also sites of ontological struggle. From transmigrasi programs to Suharto’s Mega-Rice Project and most notably today’s carbon offset regimes, peat has been transformed into a paradoxical ecology: degraded yet investible, conserved yet profitable. These transformations enclose land, force communities to choose between extraction or restoration, criminalize fire, and abandon regenerative forms of cultivation. These are histories of ontological occupation institutionalized: the marginalization of both peat’s inhabitants and the soil itself as world-making agents, shaped by speculative regimes of governance, rooted in planetary imaginaries of climate salvation and fantasies of productivity. This thesis proposes Koalisi Lahan–Gambut (Peat–Land Coalition), a speculative parainstitution that explores how coalitional spatial practices might reclaim inhabitation in peat ecologies. Situated in a Ngaju village within the buffer zone of one of the world’s largest carbon offset territories—between deep peat and riverine edges, between restoration enclosures and plantation areas—the coalition works through the murkiness of peat, the heterogeneity of its inhabitants, and the crowded terrain of overlapping institutional claims. It foregrounds the frictions between gambut (peat) and lahan (land). Structured across three inquiries, the document presents a Living Glossary that assembles field terms and relational epistemologies drawn from Kalimantan’s peatlands; a genealogy of Governance, Carbon Fix, and Buffer Zone that traces the historical and institutional processes that rendered peatlands governable; and Landing in the Buffer Zone, which turns to the coalition’s situated experiments in becoming-with, inhabiting, and reclaiming the space between peat and land.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Engineering TEV Protease Specificity: An Exploration of Machine Learning and High-Throughput Experimentation for Protein Design</title>
<link href="https://hdl.handle.net/1721.1/163577" rel="alternate"/>
<author>
<name>Sundar, Vikram</name>
</author>
<id>https://hdl.handle.net/1721.1/163577</id>
<updated>2025-11-06T03:04:11Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Engineering TEV Protease Specificity: An Exploration of Machine Learning and High-Throughput Experimentation for Protein Design
Sundar, Vikram
Engineering sequence-specific proteases would enable a wide variety of therapeutic applications in diseases ranging from cancer to Parkinson’s disease. However, many previous experimental and physics-based attempts at protease engineering have failed to engineer specificity in cleaving alternative substrates, rendering them useless. In this thesis, we aim to engineer TEV (tobacco etch virus) protease, a highly sequence-specific protease, to cleave alternative substrates. We incorporate novel high-throughput assays and powerful machine learning (ML) methods for highly effective protein engineering. The first portion of this thesis focuses on generating fitness landscapes from high-throughput experiments. Most machine learning models do not account for experimental noise, harming model performance and changing model rankings in benchmarking studies. Here we develop FLIGHTED, a Bayesian method of accounting for uncertainty by generating probabilistic fitness landscapes from noisy high-throughput experiments. We demonstrate how FLIGHTED can improve model performance on two categories of experiments: single-step selection assays, such as phage display, and a novel high-throughput assay called DHARMA that ties activity to base editing. FLIGHTED can be used to generate robust, well-calibrated fitness landscapes, and when combined with DHARMA, our methods enable us to generate fitness landscapes of millions of variants. We then evaluate how to model protein fitness given a fitness dataset of millions of variants. Accounting for noise via FLIGHTED significantly improves model performance, especially of high-performing models. Data size, not model scale, is the most important factor in improving model performance. Furthermore, the choice of top model architecture matters more than the protein language model embedding. The best way to generate sufficient data scale is via error-prone PCR libraries; models trained on these landscapes achieve high accuracy. Using these methods, we successfully engineer both activity on an alternative substrate and specificity when compared to the wild-type. The ML-designed variants outperform anything found in the training set, demonstrating the value of machine learning even with experimental libraries of millions of variants. However, our results are limited to relatively close substrates. How best to improve model performance on distant substrates remains an open question.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>An Experimental Study on the Effects of Three-Piece Oil Control Ring Design and Liner Finish on Lubricating Oil Consumption in a Hydrogen-Fueled Single-Cylinder Reciprocating Engine</title>
<link href="https://hdl.handle.net/1721.1/163576" rel="alternate"/>
<author>
<name>Tamburro, Alexandra</name>
</author>
<id>https://hdl.handle.net/1721.1/163576</id>
<updated>2025-11-06T03:07:40Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">An Experimental Study on the Effects of Three-Piece Oil Control Ring Design and Liner Finish on Lubricating Oil Consumption in a Hydrogen-Fueled Single-Cylinder Reciprocating Engine
Tamburro, Alexandra
Reducing lubricating oil consumption (LOC) in reciprocating engines is an increasingly important objective in the pursuit of lower greenhouse gas emissions, longer maintenance intervals, and compliance with tightening environmental regulations. In 2022, the U.S. transportation sector alone was responsible for 29% of national greenhouse gas emissions, 87% of which originated from systems powered by reciprocating engines [1]. While significant progress has been made in fuel efficiency, oil consumption remains as a key contributor to carbon emissions. This research investigates the impact of design parameters in three-piece oil control rings (TPOCRs) and liner surface finish on oil consumption behavior.&#13;
&#13;
Utilizing a hydrogen-fueled engine—where the only source of CO₂ emissions is from consumed lubricating oil—this study develops a high-fidelity, FTIR-based method for direct LOC measurement. A derivation of oil consumption based on air and fuel mass flow rates and measured CO₂ emissions is presented, alongside a sensitivity analysis which identified FTIR measurement uncertainty and ambient CO₂ variation as dominant error sources. All experiments were conducted at 2000 RPM under medium load (4 bar IMEP). The experimental results showed that under the tested condition, 1) increasing liner roughness increases the LOC and 2) changing the orientation of any rails with asymmetrical profile to favor up-scraping results in an elevation of LOC.  Analyses applying liner vaporization and TPOCR models showed that the changes in liner oil film thickness brought by the TPOCR changes have negligible effect on the LOC from the oil evaporation.  Increases in upper-rail up-scraping ability and the oil accumulation inside the TPOCR groove can both elevate the LOC although further investigation is needed to understand the oil transport paths leading to the LOC.&#13;
&#13;
This work provides a foundation for future optimization of TPOCR design by highlighting key ring-liner interactions and oil transport mechanisms. Further study of asymmetric geometries and surface characteristics will provide further insights for reducing oil consumption in engine platforms.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design of Future Energy Infrastructure: Understanding trade-offs between Renewable Capacity, Storage and Transmission Networks for Low-Carbon Landscape</title>
<link href="https://hdl.handle.net/1721.1/163575" rel="alternate"/>
<author>
<name>Bhupathi, Hari Raghavendran</name>
</author>
<id>https://hdl.handle.net/1721.1/163575</id>
<updated>2025-11-06T03:07:15Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Design of Future Energy Infrastructure: Understanding trade-offs between Renewable Capacity, Storage and Transmission Networks for Low-Carbon Landscape
Bhupathi, Hari Raghavendran
In 2021, the United States committed to achieving net-zero greenhouse gas emissions by 2050, requiring a fundamental transformation of its energy infrastructure. This thesis develops a nationwide optimization model to minimize capital expenditures and understand the trade-off between renewable capacity, storage, and transmission networks. The results show that the least-cost configuration, achieved when nuclear and battery capital costs fall by 50%, requires approximately $3.25 trillion in new investment - a 37% reduction relative to the baseline scenario. Comparative scenario analysis reveals a marked shift toward centralized storage when nuclear costs decline, which improves reliability and reduces contingency requirements - mirroring inventory pooling dynamics in supply chains. Concurrently, wind capacity additions fall sharply, with each 10% reduction in nuclear cost halving the predicted wind capacity addition. Transmission infrastructure evolves accordingly: 765 kV lines decline as nuclear becomes more decentralized, while 230 kV lines expand modestly to manage increased intermittency. By&#13;
quantifying trade-offs across technologies and identifying system tipping points, this work offers a framework for policymakers and long-horizon investors.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Barometer-Based Tactile Sensing: Characterization,&#13;
Processing, and Applications for Dynamic Manipulation</title>
<link href="https://hdl.handle.net/1721.1/163574" rel="alternate"/>
<author>
<name>Shah, Sharmi</name>
</author>
<id>https://hdl.handle.net/1721.1/163574</id>
<updated>2025-11-06T03:06:30Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Barometer-Based Tactile Sensing: Characterization,&#13;
Processing, and Applications for Dynamic Manipulation
Shah, Sharmi
Reliable tactile feedback is essential for robotic systems to interact effectively with their environments, especially in dynamic manipulation tasks where detecting contact onset, direction, and force is critical for control and planning. This thesis advances the development of barometer-based tactile sensors for low-force interactions, building upon prior work from the Biomimetic Robotics Lab. Previous work demonstrated that neural networks could infer contact location and three-axis contact force from barometers embedded within an elastomer. However, these models did not account for the viscoelastic behavior of the elastomer, which degrades sensor repeatability and bandwidth. To address these limitations, this thesis introduces a recurrent neural network (RNN) architecture that captures viscoelastic transients in the sensor response. The proposed methods are evaluated on two sensor geometries: a spherical sensor and a slimmer ellipsoid variant. An automated data collection pipeline is developed to generate temporally-continuous, uniformly sampled datasets across the sensor surface. RNN models trained on this data show that temporal modeling improves force prediction accuracy across both designs. To improve angle prediction accuracy, a binning strategy is used to enforce a uniform prior over contact orientations. The resulting "Binned RNN" neural networks are small-scale and demonstrate high sensitivity, enabling responsive tactile feedback. The utility of these tactile sensors is demonstrated by integrating the sensors onto a dexterous two-finger gripper and performing light grasping and estimation of object reorientation using solely tactile measurements. This work shows that accounting for viscoelastic effects through informed sampling and temporal modeling enhances the practical performance of elastomer-based tactile sensors in robotic systems.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Can diffusion models capture extreme event statistics?</title>
<link href="https://hdl.handle.net/1721.1/163573" rel="alternate"/>
<author>
<name>Stamatelopoulos, Stamatios</name>
</author>
<id>https://hdl.handle.net/1721.1/163573</id>
<updated>2025-11-06T03:07:37Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Can diffusion models capture extreme event statistics?
Stamatelopoulos, Stamatios
For many important problems it is essential to be able to accurately quantify the statistics of extremes for specific quantities of interest, such as extreme atmospheric weather events or ocean-related quantities. While there are many classical approaches to perform such modeling tasks, recent interest has been increasing in the usage of generative models trained on available data. Despite the sporadic success of such methods, it is not clear for what systems or datasets a system-agnostic generative AI tool is capable of generating previously ‘unseen’ extreme events in a manner that accurately extrapolates the tails for the observable of interest. Here, we propose an apriori criterion, which based on the geometry of the training dataset, it can predict whether a generative AI tool will be able to extrapolate the tails, i.e. generate previously unseen extreme events. The idea is to quantify whether existing extreme events lie in the interior of the dataset or its boundary. In the former case it is shown that generative AI tools can work in an ‘interpolation’ mode and generate new extreme events. On the other hand, if the topology of the dataset is such that extremes live in the boundary of the domain then the generative AI algorithm needs to operate in an extrapolation mode which does not lead to accurate results. We illustrate our findings on a specific class of Diffusion Models (DMs) called Denoising Diffusion Probabilistic Models (DDPMs) and we test on three datasets, a simple on-hyperball dataset following a Weibull distribution for the radii of the data points of dimensionality 2 • 10³, a dataset sampled from the so-called Majda-McLaughlin-Tabak Wave Model (MMT), of dimensionality 8.1 • 10³ and a dataset consisting of Lagrangian turbulence trajectories, of dimensionality 2 • 10³.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Face Me, I face you: Towards an Indigenous Economy of Glass in Southern Nigerian Dwellings</title>
<link href="https://hdl.handle.net/1721.1/163572" rel="alternate"/>
<author>
<name>Ajienka, Soala Lolia</name>
</author>
<id>https://hdl.handle.net/1721.1/163572</id>
<updated>2025-11-06T03:06:53Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Face Me, I face you: Towards an Indigenous Economy of Glass in Southern Nigerian Dwellings
Ajienka, Soala Lolia
This thesis proposes the weaving together of two lost traditions - the practice of primary glassmaking in southern Nigeria and the U-shaped bungalow typology of multi-family housing - as a means to address both the qualitative and quantitative housing deficits in Port Harcourt and to support the broader requisites of macroeconomic productivity in Nigeria. The thesis frames the argument that the materiality and application of glass can reconnect the inhabitation and construction of Face Me, I Face You (FMIFY) housing to Nigerian history, culture, and identity. By charting a blueprint for localized material production and engaging questions of affordability, cost structure, and financing, this work positions design as a technical solution and an act of cultural authorship. As an architect, builder, and member of the community, I advocate for a new practice in which the bond between local craftsmanship and housing development is re-established - through material choices, construction systems, economic benchmarking and spatial design strategies. This body of work braids together three interconnected narratives: First, it traces the historical evolution of the U shaped bungalow typology, revealing its roots as a colonial adaptation of the rural compound house, the economic conditions that have led to its physical obsolescence yet sustained market relevance and examining how its cultural significance was gradually diluted through climate-insensitive design and the introduction of imported materials. Second, this body of work rediscovers Nigeria’s precolonial glassmaking traditions, with a focus on artisanal production methods that offer environmental efficiency, energy intelligence, and deep cultural resonance - qualities in stark contrast to the high-energy, standardized imported glass that dominates today’s housing. Third, it integrates these two recoveries through built interventions: redesigning roof structures to support artisanal glass rondels, optimizing daylighting, ventilation, and thermal comfort, and reorganizing courtyards to revive their role as culturally vibrant, socially essential spaces. By leveraging indigenous glassmaking practices and small-batch production models, this thesis advocates for the creation of a circular economy, generating local employment, reducing embodied energy, and restoring cultural resilience - while delivering environmentally sensitive and economically viable housing solutions that demonstrate comparable return on costs for their owners. Foregrounding opacity as a design value, the project seeks to balance communal life with cultural and spatial notions of privacy, challenging the hegemony of imported transparency. Through the strategic curation of apertures, the careful modulation of light and shadow, and the integration of locally crafted glass rondels, the thesis re-envisions the Face Me I Face You typology. Ultimately, this work positions artisanal glass not only as a building material, but as a medium for recalibrating housing production in southern Nigeria toward systemic resilience and self-determination.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>DexWrist: A Robotic Wrist for Constrained and Dynamic Manipulation</title>
<link href="https://hdl.handle.net/1721.1/163571" rel="alternate"/>
<author>
<name>Ulloa, Gabriella E.</name>
</author>
<id>https://hdl.handle.net/1721.1/163571</id>
<updated>2025-11-06T03:06:17Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">DexWrist: A Robotic Wrist for Constrained and Dynamic Manipulation
Ulloa, Gabriella E.
DexWrist is a compliant robotic wrist designed to advance robotic manipulation in highly-constrained environments, enable dynamic tasks, and speed up data collection. DexWrist is designed to be close to the functional capabilities of the human wrist and achieves mechanical compliance and a greater workspace as compared to existing robotic wrist designs. The DexWrist can supercharge policy learning by (i) enabling faster teleoperation and therefore making data collection more scalable; (ii) completing tasks in fewer steps which reduces trajectory lengths and therefore can ease policy learning; (iii) DexWrist is designed to be torque transparent with easily simulateable kinematics for simulated data collection; and most importantly (iv) expands the workspace of manipulation for approaching highly cluttered scenes and tasks. More details about the wrist can be found at: https://sites.google.com/view/dexwrist/home.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Guiding Labor: Sensable Instructions through Digital Jigs</title>
<link href="https://hdl.handle.net/1721.1/163570" rel="alternate"/>
<author>
<name>Griffin, Danny</name>
</author>
<id>https://hdl.handle.net/1721.1/163570</id>
<updated>2025-11-06T03:07:18Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Guiding Labor: Sensable Instructions through Digital Jigs
Griffin, Danny
Contemporary architects find themselves at a juncture, navigating the transition from traditional modes of instruction to an asymmetrical integration of digital technologies. Drawings remain central to architectural practice, yet a widening gap persists between tools for making drawings and tools for interpreting them. Since Alberti’s division between intellectual and productive labor, architectural instructions have been generated in remote offices and executed on distant construction sites. Digital tools have expanded the information density of drawings, yet the process of interpretation remains predominantly analog. Graphical conventions, though precise, are abstract, and so paper instructions alone lack spatial meaning. Builders ultimately rely on the aid of analog locating techniques to translate these abstractions into actions. Tools as simple as strings and squares have long been present on construction sites, enabling this translation. Over time, the shape and function of such devices has evolved in response to different pressures of location, from the Gothic template which left room for the builder to improvise, to the industrial jig that constrained movement to ensure replicability. The limitations of analog locating became clear when the plumb bob, long trusted to mark which direction was vertical, proved inadequate for navigating trajectories of flying objects. The solution was to embed physical devices with memory, marking a transition from tools which measure where they are to those that know where they are going. This shift from stateless to stateful devices gradually entered construction sites, and though we might distrust the devices that make possible the steering of missiles, this paradigm shift offers a productive challenge to the field of architecture. If simplifying complex construction is worthwhile, then communication pathways which more faithfully transfer information from digital model to physical destination must be explored. Central to this transformation are the tools which anchor instructions on site: interfaces already mediating between architect and builder, which must now evolve to interpret digital signals from afar. Digital jigs will be the conduits of paperless instruction on physical sites, enabling what this thesis terms sensable instructions: instructions receivable by both machines and humans.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Natural Interaction: 3D Modeling in Wearable VR Using a Gesture and Speech Interface</title>
<link href="https://hdl.handle.net/1721.1/163569" rel="alternate"/>
<author>
<name>Bei, Yining</name>
</author>
<id>https://hdl.handle.net/1721.1/163569</id>
<updated>2025-11-06T03:06:33Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Natural Interaction: 3D Modeling in Wearable VR Using a Gesture and Speech Interface
Bei, Yining
Designers often rely on keyboard and mouse for 3D modeling, a method that can feel unintuitive or restrictive—especially in collaborative or spatially immersive settings. This thesis explores how multimodal interaction, specifically the combination of hand gestures and voice commands, can support more natural, efficient, and accessible 3D modeling in virtual reality (VR). Built on a custom Unity-based system integrating Meta Quest hand tracking and Wit.ai voice recognition, the study investigates how these two input modes—gesture and speech—can be used together to manipulate and modify 3D geometry in real time. The research proceeds in three phases: (1) a formative study analyzing how users intuitively deploy gestures, revealing common preferences, task breakdown strategies, and limitations in gesture inputs; (2) system design and implementation of both gesture-only and gesture + speech interfaces for navigation and object manipulation (e.g., translation, scaling, duplication); and (3) a comparative user study evaluating gesture-only, gesture + speech, and keyboard + mouse workflows in terms of learning curve, task efficiency, and user satisfaction. Results show that gesture + speech enables smoother transitions across modeling subtasks and allows users to offload certain parameters (e.g., numeric values, distances) to voice while using gestures for spatial control. Participants reported higher engagement and lower cognitive load compared to keyboard-based workflows, especially in tasks involving spatial scale and collaboration. This thesis demonstrates the feasibility and design potential of multimodal interaction for immersive modeling workflows and offers insights for future XR design tools that seek to blend precision with embodied interaction.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Learning-Guided Optimization for Intelligent Mobility Systems</title>
<link href="https://hdl.handle.net/1721.1/163568" rel="alternate"/>
<author>
<name>Li, Sirui</name>
</author>
<id>https://hdl.handle.net/1721.1/163568</id>
<updated>2025-11-06T03:04:05Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Learning-Guided Optimization for Intelligent Mobility Systems
Li, Sirui
Efficient and reliable mobility systems are essential to modern-day society, with broad impacts ranging from day-to-day commuting, public transportation, emergency response to last-mile package delivery and freight logistics. Autonomous vehicles have the potential to improve mobility efficiency and convenience but also raise questions about reliability and feasibility of deployment. The first contribution of this thesis is a set of novel, principled control-theoretical analyses that provide strong stability and reliability guarantees for autonomous vehicles and human-compatible driving, and they further covers emergent traffic behaviors in mixed-autonomy systems. While these theoretical guarantees offer valuable insights, mobility systems are inherently complex, and their overall performance often relies on solving difficult optimization problems, many of which are combinatorial, thus presenting significant scalability challenges. Overcoming these challenges requires innovative approaches that extend beyond traditional control techniques. This thesis further contributes a set of machine learning-guided optimization algorithms that significantly enhance the efficiency and scalability of solving combinatorial optimization problems. These algorithms have proven effective across a wide range of mobility-related applications. Compared to state-of-the-art solvers, they achieve 10× to 100× speed-up in large-scale vehicle routing problems, 35% to 70% solve-time improvement in various mixed-integer linear programming problems, and up to 54% acceleration in long-horizon scheduling problems. These advancements open new possibilities for efficient decision-making in large-scale transportation systems, enabling smarter, faster, and more adaptive mobility solutions. Combining learning, optimization, and control, this thesis demonstrates the potential of learning-guided optimization and principled control-theoretical analysis to address the increasing complexity of modern mobility systems.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Top-down and bottom-up interactions for cortical bursting</title>
<link href="https://hdl.handle.net/1721.1/163567" rel="alternate"/>
<author>
<name>Tang, Vincent D.</name>
</author>
<id>https://hdl.handle.net/1721.1/163567</id>
<updated>2025-11-06T03:04:21Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Top-down and bottom-up interactions for cortical bursting
Tang, Vincent D.
High-frequency burst firing occurs throughout the mammalian cortex in vivo, yet both the underlying mechanisms and functional roles of bursts are unclear. Burst firing in brain slices is strongly modulated by the activity of apical dendrites, which branch extensively in layer 1 (L1) and receive long-range inputs from higher-order cortical and thalamic areas. These properties suggest a powerful subcellular substrate by which single pyramidal neurons could multiplex bottom-up and top-down information via L1-independent tonic spikes and L1-dependent bursts, respectively, and have provided a basis for emerging theoretical models of cortical computation and learning. However, our understanding of burst firing and subcellular processing remains critically limited by a lack of evidence in awake animals. It is unclear whether burst firing a) is preferentially recruited by bottom-up versus top-down inputs, and b) requires apical dendritic engagement. To answer these questions, we performed high-density extracellular recordings in primary visual cortex of awake mice while presenting a battery of Gabor (bottom-up) and inverse (top-down) visual stimuli. We report widespread high-frequency bursts in L2/3 and L5 pyramidal neurons. Contrary to expectation, bursts exhibited extremely short response latencies, and were most strongly recruited by Gabor stimuli. We further tested the causal contribution(s) of apical dendrites to burst firing and top-down visual tuning via two optogenetic manipulations: direct L5 apical tuft inhibition and NDNF interneuron activation. Strikingly, L1 inhibition only modestly reduced the burst fraction, and did not differentially affect Gabor vs inverse responses. Taken together, these results challenge prevailing theories of apical dendritic involvement in burst spike generation and feedback visual tuning, and provide new biological constraints for future theoretical and experimental work.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Understanding the Limits of Coupled Condensation and Desorption in Sorption-Based Atmospheric Water Harvesting (SAWH) Devices</title>
<link href="https://hdl.handle.net/1721.1/163566" rel="alternate"/>
<author>
<name>Stamler, Natasha Lia</name>
</author>
<id>https://hdl.handle.net/1721.1/163566</id>
<updated>2025-11-06T03:06:56Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Understanding the Limits of Coupled Condensation and Desorption in Sorption-Based Atmospheric Water Harvesting (SAWH) Devices
Stamler, Natasha Lia
Access to clean water is a serious challenge around the world, with almost 2/3 of the global population experiencing water scarcity at some point during the year, especially in dry regions. One solution to this problem is sorbent-based atmospheric water harvesting (SAWH) due to its ability to produce drinking water in a range of environments, including at low humidity. SAWH device operation is composed of adsorption and desorption phases. During adsorption, moist air flows into the device and is adsorbed onto the sorbent bed. This is followed by the desorption phase during which the sorbent is heated to desorb the water as vapor, which is then transported to a colder condenser surface on which it is condensed as liquid water. Finally, the condensed water can be collected outside the device. However, current state-of-the-art SAWH devices are inefficient, with less than 70% of their adsorbed water being collected. This means the adsorbed water is either not condensed or condensed but not collected. This work discusses the impact of the coupling between desorption and condensation on the efficiency of SAWH devices. In general, SAWH systems can suffer from three scenarios of inefficient desorption-condensation: flux-limited, when the desorption rate in the device is insufficient to fully utilize the condenser’s condensation capacity; transport-limited, when the time scale of the vapor transport from the sorbent bed to the condenser is slow compared to the desorption operation time; and condenser-limited, when the condenser has a poor thermal design compared to the vapor flux. We developed a system-level model of a SAWH device to inform design strategies to mitigate these three bottlenecks and optimize device performance. Additionally, we quantified hydrocarbons, common airborne contaminants, as a mechanism for slowing water collection. Experimental findings are used to develop a model for the impact of airborne hydrocarbon adsorption on surface wettability and water retention for six metals commonly used as condenser materials. The findings from these models can inform design recommendations for SAWH devices as well as various other industrial applications in which water condenses on metal surfaces such as refrigeration and power generation. Future work will focus on continued experimental validation of the models.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Impact of Vimentin Intermediate Filaments on 3D Multicellular Collective Behavior</title>
<link href="https://hdl.handle.net/1721.1/163565" rel="alternate"/>
<author>
<name>Rodriguez, Camille Dyani</name>
</author>
<id>https://hdl.handle.net/1721.1/163565</id>
<updated>2025-11-06T03:06:31Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Impact of Vimentin Intermediate Filaments on 3D Multicellular Collective Behavior
Rodriguez, Camille Dyani
Vimentin, a type III intermediate filament, is an understudied component of the cytoskeletal system. However, in recent studies we can see its structural and mechanical properties aid in a cell's survival and migration. It forms a hyperelastic network and works synergistically with actin and microtubule to protect against large deformations.  Despite vimentin intermediate filaments critical role in many biological processes, there are limited studies on its role in collective migration in 3D in vitro. To elucidate vimentin’s role in a collective cell cluster, single MCF-7 cells are embedded in a Matrigel-Alginate gel, which then grow into multicellular systems. The MCF-7 cells utilized are vimentin null, chemically inducible to form vimentin networks that interact with the other components of the cytoskeleton. These MCF-7 allow for controlled expression of mature vimentin intermediate filament (VIFs) which then form networks. We study these multicellular clusters over the course of 14 days. We demonstrate that there are key differences in morphology and mechanics, with the presence of vimentin. Our results suggests VIFs create more irregular cell clusters with more visible dynamic interplay with the environment. Uninduced (no VIFs) clusters were overall less dynamic and exhibited spherical morphology and minimal protrusions. Cluster with mature VIFs tended to form more elongated multicellular clusters with increased number of projections into the surrounding gel. In these induced (with VIFs) clusters these projections are shown to be constantly protruding and retracting along with the nuclei continually reorganizing. Our results show that these projections are accompanied with increased protrusive and contractile gel displacements. These results indicate that vimentin network generate an dynamic and functional morphology, along with mechanically perturbing their environment in the early stages of cell cluster collective behavior.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Planning for Dynamic Nonprehensile Object Transport</title>
<link href="https://hdl.handle.net/1721.1/163564" rel="alternate"/>
<author>
<name>Wang, Eric K.</name>
</author>
<id>https://hdl.handle.net/1721.1/163564</id>
<updated>2025-11-06T03:06:20Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Planning for Dynamic Nonprehensile Object Transport
Wang, Eric K.
Generalized planning methods for dynamic manipulation struggle to efficiently solve kinodynamic constraints. Gradient-based methods suffer from initialization sensitivity, local optimum convergence, and lack of feasibility guarantees, while sampling-based methods can require large computation times if there exist challenging boundary conditions. Iterative Time Optimal Path Parameterization, or iTOPP, guarantees a feasible local minimum for a dynamic grasping problem by iteratively decreasing transit time for a trajectory initially generated to satisfy kinodynamic contact constraints. We demonstrate solutions that can handle initial or final goal states defined as quasistatically infeasible, in which purely quasistatic motions cannot generate a warm start trajectory. We also design an indirect adaptive controller that can track a desired dynamic grasping trajectory assuming unknown object mass and location parameters.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fundamental Behavior of Nanoporous Networks in the Out-of-Autoclave Manufacturing of Carbon Fiber Reinforced Polymer Composites</title>
<link href="https://hdl.handle.net/1721.1/163563" rel="alternate"/>
<author>
<name>Webb, Alisa Nicole</name>
</author>
<id>https://hdl.handle.net/1721.1/163563</id>
<updated>2025-11-06T03:08:28Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">Fundamental Behavior of Nanoporous Networks in the Out-of-Autoclave Manufacturing of Carbon Fiber Reinforced Polymer Composites
Webb, Alisa Nicole
Throughout the aerospace industry, carbon fiber reinforced polymer (CFRP) laminated composites are used extensively in spacecraft and aircraft vehicles due to their high specific strength and stiffness and other properties. Processing these advanced structural CFRP composites, especially in prepreg form, is often completed via autoclaves where elevated temperatures and pressures of typically 180 ◦C (350 ◦F) and 0.7 MPa (7 bars), respectively, are applied to cure the polymer matrix and compress the constituent laminae together. However, autoclaves are energy intensive, expensive, and impose geometrical constraints on components due to thermal gradients within the chamber. Thus, there exists a need to find alternative manufacturing techniques. Throughout this thesis, an alternative method to autoclave processing is presented using vacuum-bag only (VBO) techniques with nanoporous networks (NPNs) in the interlaminar regions in autoclave-required epoxy prepreg CFRP composites. Nanoporous materials are defined as materials containing pores in the mid nanometer to low micrometer range. Once placed in the interlaminar region of the laminate, voids are reduced by the induced capillary pressures of the NPNs, and trapped gas evacuates through the NPN. By utilizing capillary flow porometry, capillary pressure and through-thickness permeability are quantified for various NPNs, along with other porous materials. Capillary pressure and permeability exhibit an inversely proportional relationship for all tested materials with CNT-based and polymer aerogel NPNs providing capillary pressures higher than an autoclave pressure of 0.7 MPa. Accordingly, an Ashby-type plot is presented as an aid for NPN selection for composites manufacturing. Previous studies of unidirectional glass fiber reinforced polymer (GFRP) composites and unidirectional CFRP composites show success with NPN-enabled VBO-manufacturing using aligned carbon nanotubes (A-CNTs) and electrospun polymer nanofiber (EPN) mats. However, success with woven prepreg has not been consistently achieved before this thesis. Autoclave woven epoxy CFRP laminates of IM7/8552 are manufactured using EPN and polymer aerogel NPNs with a VBO procedure. Once manufactured, these laminates were characterized for quality through void content analysis. 0.11 void vol% was achieved which is well within the 1 vol% of void requirement for aerospace-grade composite components. To aid the in the understanding of NPNs, in situ experiments utilizing microcomputed tomography are developed to investigate the (presumed Newtonian) flow of resin throughout the NPN as a function of temperature, which varies throughout a typical manufacturer recommended cure cycle (MRCC), along with the void evolution throughout the cure cycle. Based on this new in situ understanding, a manufacturing process modification is devised to produce void-free woven laminates at the 152.4 mm laminate scale. Through manufacturing, material characterization, and designed in situ experiments, this thesis demonstrates the use of NPNs for VBO-manufacturing of low-void content aerospace-grade CFRP composites to replace autoclaves for energy and cost savings.
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mediators: Participatory Collective Intelligence for Multi-Stakeholder Urban Decision-Making</title>
<link href="https://hdl.handle.net/1721.1/163562" rel="alternate"/>
<author>
<name>Gao, Jin</name>
</author>
<id>https://hdl.handle.net/1721.1/163562</id>
<updated>2025-11-06T03:08:26Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Mediators: Participatory Collective Intelligence for Multi-Stakeholder Urban Decision-Making
Gao, Jin
Cities are dynamic and evolving organisms shaped through the check-and-balance of interest exchange. As cities gain complexity and more stakeholders become involved in decision-making, reaching consensus becomes the core challenge and the essence of the urbanism process. This thesis introduces a computational framework for AI-augmented collective decision-making in urban settings. Based on real-world case studies, the core decision-making process is abstracted as a multiplayer board game modeling the check-and-balance dynamics among stakeholders with differing values. Players are encouraged to balance short-term interests and long-term resilience, and evaluate the risks and benefits of collaboration. The system is implemented as a physical interactive play-table with digital interfaces, enabling two use cases: simulating potential outcomes via AI self-play, and human–agent co-play via human-inthe-loop interactions. Technically, the framework integrates multi-agent reinforcement learning (MARL) for agent strategy training, multi-agent large language model (LLM) discussions to enable natural language negotiation, and retrieval-augmented generation (RAG) to ground decisions in contextual knowledge. Together, these components form a full-stack pipeline for simulating collective decision-making enriched by human participation. This research offers a novel participatory tool for planners, policymakers, architects, and the public to examine how differing values shape development trajectories. It also demonstrates an integrated approach to collective intelligence, combining numerical optimization, language-based reasoning, and human participation, to explore how AI–AI and AI–human collaboration can emerge within complex multi-stakeholder environments.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Creating space for HVAC systems: A new, intuition-building approach to HVAC system integration in architectural education and practice</title>
<link href="https://hdl.handle.net/1721.1/163561" rel="alternate"/>
<author>
<name>Irani, Ali</name>
</author>
<id>https://hdl.handle.net/1721.1/163561</id>
<updated>2025-11-06T03:04:50Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Creating space for HVAC systems: A new, intuition-building approach to HVAC system integration in architectural education and practice
Irani, Ali
Heating, Ventilation, and Air Conditioning (HVAC) systems are vital to ensuring a healthy indoor environment in buildings. They are essential to the global shift toward a decarbonized, all-electric future. While integrated design practice has promised cost, energy, and space savings due to earlier and more frequent collaboration between design disciplines, remaining missed opportunities in the HVAC system design and coordination process often lead to spatial conflicts, performance tradeoffs, and uncomfortable spaces. This dissertation aims to understand current coordination practices to identify the root causes of existing problems, timeline issues, and knowledge gaps. Then, it proposes a series of enhancements to address these shortcomings, focusing on National Architectural Accrediting Board (NAAB) accredited architectural education programs that train the next generation of practicing architects. The proposed research hypotheses are validated in a three-part research approach: (1) releasing architecture industry surveys and conducting interviews, (2) designing and testing an early-stage design tool, and (3) developing, implementing, and evaluating a comprehensive HVAC curriculum for architecture students. The dissertation demonstrates that with the right tools and educational resources, architecture students can make informed, intuition-based HVAC system selections and integrate them into their building design, with students who studied the comprehensive curriculum demonstrating a 13% improvement in understanding and application of HVAC concepts compared to a control group of students. This work helps bridge the knowledge gap regarding HVAC systems, empowering designers to coordinate more effectively and prioritizing the role of HVAC systems in building performance simulation education.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>From Scar To Scaffold: The Afterlife of the Oil Pipeline for a Decarbonizing World</title>
<link href="https://hdl.handle.net/1721.1/163560" rel="alternate"/>
<author>
<name>Apostolopoulou, Katerina</name>
</author>
<id>https://hdl.handle.net/1721.1/163560</id>
<updated>2025-11-06T03:08:24Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">From Scar To Scaffold: The Afterlife of the Oil Pipeline for a Decarbonizing World
Apostolopoulou, Katerina
With over 86,000 kilometers of crude oil pipelines—and more than 2.13 million kilometers of total oil and gas pipelines in the United States as of 2024—many segments are already corroded and aging, deeply embedded within urban and ecological systems that are increasingly endangered. As the global energy transition accelerates, this thesis investigates the future of these infrastructures, reconsidering the vast network of decommissioned and declining legacy pipelines not as obsolete relics, but as latent spatial assets for ecological repair, climate resilience, and socio-environmental justice. Moving beyond narratives of extraction and decay, the project repositions pipelines as linear territories of opportunity—capable of being retrofitted into new civic, ecological, and infrastructural frameworks. Central to the project is the transformation of the pipeline’s linear, extractive logic into a circular and connective one: a loop that is both finite and infinite, territorial and experiential. Focusing on a strategically selected loop of crude oil pipelines spanning 14 states, the thesis constructs a cartographic and architectural framework to reimagine these lines as sites of ecological repair, social infrastructure, and alternative energy distribution—where design, much like a biological scaffold, acts as a catalyst for regeneration along landscapes shaped by extraction. Through spatial analysis, typological classification, and mapping, five territorial conditions are defined along the pipeline loop, each offering distinct opportunities for intervention. These are tested through speculative design prototypes that transform the pipeline through operations of repurpose, renewable energy distribution, or ecological remediation. The interventions reframe invasive infrastructures into public and environmental assets—generating new spaces for inhabitation, production, and collective memory. Ultimately, the thesis proposes a post-carbon design paradigm rooted in ecological reciprocity, collective agency, and infrastructural care—revealing hidden energy landscapes and inscribing them with new values: resilience, equity, and repair.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Control and Aerodynamic Design of a Solar Road Vehicle with Articulated Surfaces</title>
<link href="https://hdl.handle.net/1721.1/163559" rel="alternate"/>
<author>
<name>Salmon, Jason</name>
</author>
<id>https://hdl.handle.net/1721.1/163559</id>
<updated>2025-11-06T03:08:18Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Control and Aerodynamic Design of a Solar Road Vehicle with Articulated Surfaces
Salmon, Jason
The automobile industry is critical to modern society. Simultaneously, the constant release of toxic emissions such as greenhouse gases into the atmosphere is detrimental to health and the environment. Vehicles which exploit cleaner energy sources would be preferable to reduce the horrific scale of human-initiated damage such as climate change. However, solar road vehicles—though designed and fabricated by some—have not reached a sufficient level to be production-worthy. The low efficiency of solar cells and the high energy demands of the average land vehicle are irreconcilable for most manufacturers using industry methods and design precedent. Therefore, this work centres around the design and control of a solar road vehicle which fundamentally breaks from the mould of the typical road vehicle design—a vehicle which employs extensive articulated surfaces (dubbed "solar wings") which can be angled to directly face the sun, thereby maximising solar irradiation. A solar tracker using Bayesian inference achieving promising results in both convergence and accuracy is presented. Additionally, a systematic method for optimizing a solar road vehicle with solar wings is developed and documented.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mechanisms of Multi-Object Working Memory and Motion Prediction in the Primate Brain</title>
<link href="https://hdl.handle.net/1721.1/163558" rel="alternate"/>
<author>
<name>Watters, Nick</name>
</author>
<id>https://hdl.handle.net/1721.1/163558</id>
<updated>2025-11-06T03:04:48Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Mechanisms of Multi-Object Working Memory and Motion Prediction in the Primate Brain
Watters, Nick
Sample-efficient learning and flexible generalization are hallmarks of intelligent behavior. Both sample-efficient learning and flexible generalization rely on re-using a mental model of the world in new contexts. For many decades, researchers in cognitive science, neuroscience, and machine learning have studied competing theories about the structure of our mental model of the world. One set of theories concerns the structure of multi-object representations in the brain. Some studies claim the brain represents multiple objects by allocating them to disjoint “slots” in working memory, others claim that the brain flexibly distributes a common pool of resources across objects, and yet others claim the brain represents multiple objects by rapidly switching between them through time. Another set of theories concerns the nature of predicting object motion. Some claim that the mind has an internal model of physics in the world that it uses to simulate the motion of objects through time, whereas others claim the mind relies on priors and heuristics to predict object motion without explicit simulation. Both of these sets of competing theories are long-standing and unresolved. In this work, we tackle these two open questions using primate neurophysiology and computational modeling. We trained monkeys to perform multi-object memory and motion prediction tasks, recorded large-scale single-unit activity from frontal cortex brain areas, and rigorously compared different hypotheses for the neural mechanisms of multi-object working memory and motion prediction. In the case of multi-object working memory, we found that the neural activity we recorded is more consistent with a model that flexibly distributes attentional resources across objects than with models that use object slots or temporal switching representations. In the case of motion prediction, we found that the neural activity is not consistent with the monkeys simulating an occluded moving object in real-time. Instead, the monkeys’ neural activity is driven largely by an anticipation of the position of the object at a future point in time. Both of these findings call into question long-standing cognitive theories and imply that the brain’s model of the world incorporates attentional mechanisms, priors, and heuristics. Lastly, we introduce a neural data preprocessing method for stabilizing electrophysiology recordings. This method improves spike-sorting results, helped us recover more neurons from our data, and we hope may help others make the most of their electrophysiology data as well.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design and Commercialization Strategy of a Gantry-Based Automation Platform for High-Throughput Raman Spectroscopy</title>
<link href="https://hdl.handle.net/1721.1/163557" rel="alternate"/>
<author>
<name>Romero, Catalina</name>
</author>
<id>https://hdl.handle.net/1721.1/163557</id>
<updated>2025-11-06T03:07:39Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Design and Commercialization Strategy of a Gantry-Based Automation Platform for High-Throughput Raman Spectroscopy
Romero, Catalina
Raman spectroscopy is a powerful optical technique that enables rapid, label-free molecular analysis. This offers significant potential to be used across pharmaceutical development, microbiome research, and food diagnostics. However, the utility of Raman spectroscopy in high-throughput applications has been limited by the lack of cost-effective, modular automation platforms capable of handling large volumes of samples with precision and repeatability. Conventional Raman workflows are constrained by manual sample handling, slow throughput, and high user variability, limiting their applicability in high-volume testing environments. To address these challenges, this thesis presents the development and initial validation of a custom two-axis (XY) gantry and a robotic well plate stacker automation platform designed to streamline the sample handling workflow in Raman spectroscopy systems, facilitating high-throughput, precise, and reproducible positioning of microplate samples under a Raman microscope. This thesis also provides a commercialization framework for the system as a standalone automation product, targeting pharmaceutical high-throughput screening, microbiome analysis, and food safety testing. The platform serves the unmet needs in these industries, where labor-intensive and inconsistent sample positioning limits scalability. The commercialization analysis includes an evaluation of market sizing, competitive benchmarking, pricing models, and go-to-market strategies. The modular platform has the potential to enable broader adoption of Raman-based analysis tools by reducing labor intensity and improving repeatability in sample positioning workflows. This work lays the foundation for the future integration of optical feedback and automated analysis, with the goal of transforming how Raman-based diagnostics are conducted at scale.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dishing It Out: Reimagining Multicultural College Dining Through Student-Centered Design</title>
<link href="https://hdl.handle.net/1721.1/163556" rel="alternate"/>
<author>
<name>Dong, Annie</name>
</author>
<id>https://hdl.handle.net/1721.1/163556</id>
<updated>2025-11-06T03:08:46Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Dishing It Out: Reimagining Multicultural College Dining Through Student-Centered Design
Dong, Annie
Dining halls are central spaces in colleges, fostering not only nourishment but also cultural connection and community. However, when dining centers fall short in catering to the needs of their multicultural student body, students are often left feeling isolated and even further from home. Using MIT as a case study, this thesis employs user research and digital storytelling to explore how collecting student perspectives can inform college dining centers on better supporting the diverse cultural backgrounds and dietary needs of their students. The research and findings highlight the critical gaps and strengths in cultural representation within MIT’s dining halls. Through surveys and user research, this thesis gathers student perspectives on food authenticity, comfort, and identity, which inform the design of an interactive website prototype exploring student culinary backgrounds and preferences. This project serves as both a resource for dining services and a digital cookbook curated by the student body. By centering student voices through a culinary lens, this project aims to reimagine dining spaces as inclusive, representative, and comforting shared spaces within college campuses.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Intelligence Through Interaction: Leveraging Physical Interactions In Simple Robots To Produce Complex Behaviors</title>
<link href="https://hdl.handle.net/1721.1/163555" rel="alternate"/>
<author>
<name>Spino III, Pascal</name>
</author>
<id>https://hdl.handle.net/1721.1/163555</id>
<updated>2025-11-06T03:08:15Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Intelligence Through Interaction: Leveraging Physical Interactions In Simple Robots To Produce Complex Behaviors
Spino III, Pascal
This thesis investigates how intelligent robot behavior can emerge from physical interactions rather than sensing, computation, and actuation in the traditional sense. Two robotic systems are presented to explore this concept in different domains. The first is a swarm of simple rolling robots whose collective morphology is shaped by distributed control laws and magnetic interactions, enabling decentralized construction-like behaviors such as bridge formation. The second is a soft underwater robot inspired by anguilliform swimming, which achieves efficient locomotion through a single actuator that leverages fluid–structure interactions in a compliant silicone tail. Useful behavior arises in both systems from the physical design and the dynamics of environmental interaction, rather than from algorithmic or computational complexity. These results demonstrate that physical intelligence can serve as a powerful design principle for building adaptive, robust, and minimal robotic systems.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Application of Revenue Management to Satellite Communications</title>
<link href="https://hdl.handle.net/1721.1/163554" rel="alternate"/>
<author>
<name>Eiskowitz, Skylar</name>
</author>
<id>https://hdl.handle.net/1721.1/163554</id>
<updated>2025-11-06T03:04:23Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">Application of Revenue Management to Satellite Communications
Eiskowitz, Skylar
As the demand for satellite Internet continues to grow, satellite communication (SatCom) operators are faced with the challenge of effectively managing their capacity sales. While Revenue Management (RM) techniques have been widely used in other industries such as airline, hotel, and car rental services, the application of these methods in the context of SatCom is still scarce. This Thesis aims to bridge this gap by developing RM concepts, techniques, and optimization algorithms specifically tailored to the unique operational characteristics of SatCom capacity management and sales. The proposed SatCom RM method guides operators with quantitative recommendations of the amount of capacity to sell to different products in time and in different regions to maximize revenues.&#13;
&#13;
 Though SatCom has characteristics that favor the use of RM concepts (perishable inventory, fixed capacity with a low variable cost, the possibility to segment demand), there are unique structural characteristics that complicate the development of SatCom RM models. The primary challenge is that different products consume varying amounts of capacity, with larger terminal size products utilizing less power on a satellite than smaller terminal size products. Moreover, the selling practices in SatCom are complex because products may be sold in one period and consumed across multiple periods in which additional sales are made. This requires rolling both the selling and consumption periods. Lastly, the SatCom RM problem poses a multidimensional network problem, as products can consume bundles of resources in both space and time. &#13;
&#13;
We extend two commonly used airline RM algorithms, Expected Marginal Seat Revenue (EMSRb) heuristic and Displacement Adjusted Virtual Nesting (DAVN) to the SatCom problem to create booking limits. The booking limits recommend a threshold amount of capacity an operator should sell of each product. The contribution of this Thesis is the modification of established airline RM algorithms to handle products with variable capacity uptakes. Further, these algorithms typically account for displacement costs of products, but only in one dimension of space or time (e.g., selling an airline flight that uses multiple spatial legs may displace capacity away from flights that only use one leg). Our modifications allow for the consideration of displacement costs in both dimensions of space and time.&#13;
 &#13;
In order to evaluate the effectiveness of our inventory control approach, we conduct simulations of various demand scenarios and compare the revenue gains to a baseline scenario with no controls, as well as a simpler method that does not consider product duration. In a large-scale simulation spanning three years and encompassing thousands of product requests, we observe revenue gains ranging from 15%-30% depending on the demand scenario. Then, we extend the model to multiple zones and achieve 2%-10% revenue improvement using our Multi-Zone DAVN method compared to the DAVN method applied to each zone separately.
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hidden Monuments</title>
<link href="https://hdl.handle.net/1721.1/163553" rel="alternate"/>
<author>
<name>Lee, Sesil</name>
</author>
<id>https://hdl.handle.net/1721.1/163553</id>
<updated>2025-11-06T03:08:12Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Hidden Monuments
Lee, Sesil
Jeju Island’s burial culture is embedded in the island’s distinct landscape, where sandam burial mounds are not isolated monuments but quietly coexist with fields, ranches, and forests. These sites are living records of intangible heritage—ancestral beliefs, Beolcho rituals, and vernacular stone-stacking practices—manifested not through formalized memory, but through their modest yet persistent presence in the landscape. Today, however, these spaces are under threat: policies favoring cremation, rapid urbanization, and shifting land values render them increasingly invisible or obsolete. In the past few decades, two-thirds of sandam have been displaced, and with fewer than six out of over 100,000 burial sites designated as cultural heritage, traditional models of conservation are inadequate—unable to engage with the dispersed, landscape-bound nature of these burial grounds. This project reimagines Jeju’s burial mounds not as relics to be preserved, but as spatial anchors for cultural and communal expressions. Through a series of small-scale architectural interventions—gates, stages, passages, and shelters—deployed along paths tracing sandam clusters, the work explores how memory can be practiced rather than displayed. By offering ways to engage with the buried, the forgotten, and the living simultaneously, the project expands the idea of heritage: not as a static record, but as a participatory and evolving relationship between people, land, and memory.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Non-invasive tuning of experience-dependent plasticity in the primary visual cortex</title>
<link href="https://hdl.handle.net/1721.1/163552" rel="alternate"/>
<author>
<name>Reilly-Andújar, Francis</name>
</author>
<id>https://hdl.handle.net/1721.1/163552</id>
<updated>2025-11-06T03:04:09Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Non-invasive tuning of experience-dependent plasticity in the primary visual cortex
Reilly-Andújar, Francis
The cerebral cortex exhibits a remarkable capacity for experience-dependent plasticity, a feature that is predominantly confined to critical periods (CPs) during early postnatal development. In the mouse primary visual cortex (V1), ocular dominance plasticity (ODP) has served as a premier model for investigating the cellular and molecular mechanisms that underlie the formation and stabilization of cortical circuits. During the CP, short-term monocular deprivation (MD) induces both functional and anatomical changes in binocular V1, characterized by a weakening of deprived-eye responsiveness via mechanisms of synaptic long-term depression. As the critical period closes, increased inhibitory drive and the emergence of perineuronal nets (PNNs) stabilize neural circuits and restrict further experience-dependent plasticity. In Chapter 1, I review the key literature on ODP and provide a survey of interventions that have been shown to enhance ODP in adulthood. In Chapter 2, I present our findings that repeated anesthetic ketamine treatment can reinstate ‘juvenile-like’ plasticity in the adult mouse V1. Importantly, I demonstrate that this effect relies on the microglia-mediated depletion of PNNs, and that interfering with microglial purinergic P2Y12 receptor activation blocks the ketamine-induced enhancement of ODP. Building on these insights, Chapter 3 investigates the use of non-invasive light-flicker stimulation at different temporal frequencies as a means to unlock different forms of ODP in the adult mouse V1. Our results reveal that 60 Hz light-flicker stimulation reduces PNN levels and promotes a depression of deprived-eye responses following short-term MD, whereas 40 Hz stimulation – without altering PNN levels – enhances an adult form of ODP characterized by the strengthening of non-deprived eye responses following short-term MD. Furthermore, we show that in mice subjected to long-term MD initiated early in life, 40 Hz light-flicker treatment promotes recovery of visual function, as evidenced through physiological and behavioral assays. Finally, Chapter 4, outlines a series of future experiments designed to further elucidate the mechanisms by which light-flicker stimulation promotes enhanced ODP in adult V1. Together, the findings presented in this thesis introduce novel, minimally invasive (ketamine) and non-invasive (light-flicker) interventions that show promise as therapeutic strategies for ameliorating deficits arising from early life sensory deprivation.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of Mechanical and Electrical Interfaces for Rapid Swap Battery Systems</title>
<link href="https://hdl.handle.net/1721.1/163551" rel="alternate"/>
<author>
<name>Wucherer, Abigail</name>
</author>
<id>https://hdl.handle.net/1721.1/163551</id>
<updated>2025-11-06T03:07:52Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Development of Mechanical and Electrical Interfaces for Rapid Swap Battery Systems
Wucherer, Abigail
In the drive towards a globally decarbonized energy economy, rapid swap battery packs provide a potential means to improve electric vehicle adoption in high utilization industrial vehicles where lengthy charge times are a barrier to electrification. High voltage, high current battery connectors are a critical component for coupling the pack to the electric vehicle, distributing power from the battery to the drivetrain. Most state-of-the-art connections require precision alignment of contact surfaces, and bolted preload or retention mechanisms, hindering the implementation of rapid swap battery systems. The need for robust, high life cycle, high-power contacts motivates a new approach to connector design. The integration of electrical connectors with the battery mount’s structural loop creates a new design space where preload, geometry, and contact resistance may be optimized. This co-design approach enables mechanical and electrical functional requirements to be considered in conjunction to ensure reliable fulfillment in both areas while reducing the time for battery pack swaps. This work introduces two distinct approaches for aligning the pack to the vehicle, locking the battery in place, and engaging electrical contact with geometry unique to the system design. These approaches offer higher reliability, mechanical and electrical longevity, and automatic alignment capabilities during loading of the battery pack. Across both designs, the contact resistance is the primary metric for evaluating the electrical performance, and the contact pressure is used to evaluate the risk of mechanical wear. The first approach integrates a quasi-kinematic coupling-based connector with integrated electrical contacts, allowing for repeatable and accurate positioning of the battery pack to the vehicle. A slotted ball and socket design approach is considered to accommodate for angular misalignment and establish repeatable contact area through elastic averaging. The second approach proposes a planar contact to further reduce the contact pressure and increase contact longevity without the need for expensive and rare hardened coatings. This system relies on a rail and flat system for guiding the battery pack into a locked position and engaging the planar contacts.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Weaving Borders, Mapping Place: Afghan War Rugs of the Soviet-Afghan War (1979-1989)</title>
<link href="https://hdl.handle.net/1721.1/163550" rel="alternate"/>
<author>
<name>Hakemy, Arezo</name>
</author>
<id>https://hdl.handle.net/1721.1/163550</id>
<updated>2025-11-06T03:08:16Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Weaving Borders, Mapping Place: Afghan War Rugs of the Soviet-Afghan War (1979-1989)
Hakemy, Arezo
Early Afghan war rugs delineate place through their pictorial design, embedding spatial memory into the tactile surface of the woven field. Emerging in the wake of the Soviet invasion in the late 1970s, these rugs integrate modern war iconography of tanks, helicopters, and maps into a medium historically tied to regional identity, spiritual practice, and craft. While earlier scholarship has often read these rugs as commodities of war tourism, this thesis moves beyond this interpretation to foreground the rug as a placemaking device, one that asserts territory and agency through mapping techniques. Afghan war rugs frame and define space on a land that has largely been considered placeless, at times porous and seemingly unknown. Through their borders, these rugs resist the geopolitical narratives that have long reduced Afghanistan to a war-torn frontier. The border serves as a framing device, structuring the rug’s design while simultaneously asserting territorial presence. Whether following a prescribed cartoon or improvising patterns, the weaver actively engages in “border-ing,” exercising cartographic agency by embedding personal, traditional, and political motifs into the rug. This research interrogates how early Afghan war rugs engage in spatial representation against the backdrop of the Soviet-Afghan war from 1979-1989. From historical colonial mapping projects to Soviet and American cartographic investigations, Afghanistan’s borders have long been sites of surveillance, resource extraction, and imperial ambition. Yet, in contrast to these external mapping practices, the war rug’s design is a resistant act of placemaking. Examining the rug as both artifact and map, this study explores how Afghan weavers reclaim their landscapes through rug making, embedding memory and materiality into woven form.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The role of texture in auditory scene analysis</title>
<link href="https://hdl.handle.net/1721.1/163549" rel="alternate"/>
<author>
<name>Hicks, Jarrod M.</name>
</author>
<id>https://hdl.handle.net/1721.1/163549</id>
<updated>2025-11-06T03:04:39Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">The role of texture in auditory scene analysis
Hicks, Jarrod M.
Everyday auditory scenes contain sounds from many sources. For example, when crossing the street, you might hear sounds produced from the rumble of passing cars, the chatter of pedestrians, and the rapid tick of crosswalk signals. To make sense of this complex mixture of sounds, the auditory system must separate the mixture into coherent perceptual representations that are likely to correspond to the underlying sources in the world. This process is known as auditory scene analysis. Although a rich body of work has probed auditory scene analysis with simple synthetic stimuli and revealed principles of perceptual organization, the extent to which these principles apply to real-world scenes with natural sounds remains unclear. This thesis empirically examines auditory scene analysis with realistic sounds. In particular, we study the perception of scenes containing a common class of environmental sounds known as “textures”, investigating how the auditory system makes use of statistical structure to separate textures from other sources and how the underlying statistical representation both constrains and enables scene analysis. We first investigated the mechanisms of hearing in noise using real-world background “noise” textures. The results show that the auditory system estimates the properties of “noise” textures and stores them over time, using the resulting internal model to estimate other concurrent sounds. We then considered how concurrent sound texture sources are separated from each other. We found that auditory scene analysis with textures involves some principles identified in classical scene analysis work with simple sounds, but that these principles apply to the higher-order statistical representations that define natural textures. Together, the results reveal new aspects of auditory scene analysis with real-world sounds and clarify the role texture plays in everyday hearing. Our findings provide a bridge between the simple, synthetic stimuli studied historically and the rich complexity of real-world sounds.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Driving Temporally Precise Learning in Individual Premotor Neurons using Closed-Loop Neurofeedback</title>
<link href="https://hdl.handle.net/1721.1/163548" rel="alternate"/>
<author>
<name>Scherrer, Josefa R.</name>
</author>
<id>https://hdl.handle.net/1721.1/163548</id>
<updated>2025-11-06T03:04:46Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Driving Temporally Precise Learning in Individual Premotor Neurons using Closed-Loop Neurofeedback
Scherrer, Josefa R.
Much of human existence is based on our ability to learn complex sequences of motor movements. Speech, writing, and tool use all require activating a series of different muscles in a precisely timed pattern, and these patterns are learned through a long process of trial and error. How does the neural circuitry in our motor system learn to generate the activity patterns that drive these sequences? This question can be explored by studying a similarly precise learned motor pattern in a different organism, the learned song of the songbird zebra finch.&#13;
&#13;
Zebra finches learn to sing a stereotyped song through a process of vocal experimentation and comparison to an internal template. Every time a bird sings, it varies the acoustic parameters of its song and determines whether each variation brings the song closer to its internal template. Variations that result in a better match are then repeated in subsequent renditions of the song, in a trial and error process suggestive of reinforcement learning. The learning process requires a basal ganglia-thalamocortical loop called the anterior forebrain pathway (AFP) that is similar to basal ganglia-thalamocortical circuitry in mammals. Existing evidence suggests that the AFP learns a time-dependent bias signal that steers the motor pathway to avoid vocal errors. This bias signal is known to be dependent on the cortical output of the AFP known as LMAN (lateral magnocellular nucleus of the anterior nidopallium). However, little is known about the neural code in LMAN that underlies this bias signal, or how this neural code is learned and generated.&#13;
&#13;
We address these questions by building a neural feedback system that allows us to impose correlations between the activity of individual LMAN neurons and a dopaminergic reward signal. We designed a low-latency feedback system that records neural activity from a chronic Neuropixels 2.0 implant, extracts the activity of specific neurons, and plays noise bursts to the bird contingent on the activity of those neurons. We used this system to perform feedback based on the activity of an arbitrarily chosen neuron in LMAN within a given 10 ms window in songs. All birds responded to the feedback by learning to bias the activity of the chosen LMAN neuron up or down within the chosen time window, transiently driving firing rates up by as much as 200 Hz. We observed a remarkable degree of timing precision in the learned bias, with birds able to control the activity of the chosen neuron at single millisecond levels of rise time and jitter. This high degree of precision informs models of the basal ganglia circuit architecture thought to drive learning. We also found the learned bias to be specific to the LMAN neurons correlated with reward, with neighboring uncorrelated neurons exhibiting no change in firing rate during learning. This single-neuron specificity strongly constrains the spatial precision of axonal targeting from thalamic regions that are thought to propagate the learned bias signal from the basal ganglia to LMAN. Finally, we demonstrated that fluctuations in neural activity of a given LMAN neuron drive transient and predictable changes in vocal output approximately 25 milliseconds later, consistent with what is known about signal propagation speeds in the song system. This fact, together with the results of our feedback experiments, combine to confirm our central hypothesis that LMAN drives song learning by independently activating LMAN neurons at precise points in time in order to bias vocal output and avoid vocal errors.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Social Sensory Somatic Scores for Species, Spaces, Soils, and&#13;
Structures of Steep Slopes</title>
<link href="https://hdl.handle.net/1721.1/163547" rel="alternate"/>
<author>
<name>Bondarenko, Lina</name>
</author>
<id>https://hdl.handle.net/1721.1/163547</id>
<updated>2025-11-06T03:07:36Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Social Sensory Somatic Scores for Species, Spaces, Soils, and&#13;
Structures of Steep Slopes
Bondarenko, Lina
Modern knowledge systems have physically and conceptually “flattened” the world, erasing the ecological, political, and sensory complexities inherent to sloped terrain. By attending closely to the slope—as both a material condition and a generative metaphor—this thesis foregrounds movement as a form of resistance to regimes of exploitation, abstraction, and estrangement that have historically transformed land into data and place into property. Weaving together interdisciplinary methodologies from performance studies, landscape architecture theory, feminist geography, ecological theology, environmental history, sensory ethnography, and media studies, SSSSSSSSSS dances an inclined methodological structure, oscillating deliberately between critical systemic analysis and situated sensory experience. Ch1. sets the stage among steep slopes and introduces the discipline to movement as pedagogy, enacting the urgency for new methodologies into schemes of the project’s medium and the book’s format. Ch.2 is a feminist investigation of the ways modern infrastructures and spaces have been designed to reinforce land abstraction and commodification in the name of improvement-- severing embodied relationality, contributing to societal apathy toward ecological and social crises. Imperial post-enlightenment statecraft, the suppression of wildness, and the standardization of level form have flattened our upright movements to enact a state of senslessness. Contradicting Ch.2’s straight critique, Ch.3 attempts to reweave the sinuous nuance of symbiogenesis between soils and species, revealing that humans are but one among many sloped organisms moving, and inclining, and co-evolving as the lithosphere; we have been slorgs all along. Slorgs belong to divine mythologies of terrain’s elevations and have reciprocated in admiration, mimicking topographic spatial functions and adorning the summits with artistic interventions--some inadvertently contributing to the damaging regimes of Ch.2. Interwoven through both chapters, outliers resisting those forces of governance and exploitation are often those displaced by them-- those moving in ways the system polices and erases from comprehension-- refugees, queers, witches, tricksters, artists, herbalists, and healers. The intended medium of SSSSSSSSSS coalesces in Ch.4: inviting the general public to participatory happenings with hills, composing scores, coaxing their inner slorgs to slither askew, sloping themselves as moving loci for sympoietic becoming. Multi-species attune to a social, sensed, somatic experience, co-composing spatial relations among local steep soils. Slorgs challenge the abstractions of dominant epistemologies in the temporal, situated act of trusting their own proprioception in collective balance, affirming the multidimensional value of embodied, ecological geo-choreography. Social Sensory Somatic Scores for Soils, Structures, Spaces, and Species of Steep Slopes are presented through photographs in Ch.4 and in moving image, available as supplemental material.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Spiritual Curation of American Modernism</title>
<link href="https://hdl.handle.net/1721.1/163546" rel="alternate"/>
<author>
<name>Saha, Indrani</name>
</author>
<id>https://hdl.handle.net/1721.1/163546</id>
<updated>2025-11-06T03:04:41Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">The Spiritual Curation of American Modernism
Saha, Indrani
Where do the spiritual go? In this study of late-nineteenth- and early-twentieth-century seekers, they join seances in Vermont farmhouses, attend Theosophical lectures on Karma, get lost in copies of Jnana-Y oga, journey to Buddhist temples in China, and consume spiritual manuals on Mentalphysics. But where do they go after those encounters? And, more importantly, what do they do? In this dissertation, they build modern art institutions. A cadre of artist-writers, museum curators, and public intellectuals found their power in early 20th century America by building institutions to introduce a new, spiritually grounded modern art to a mercantile nation. In the US, beyond European sources for "the spiritual" were flirtations with vaguely "Eastern" ones by way of Theosophy. Those who sought to institutionally manifest Wassily Kandinsky's "spiritual" in art believed themselves to provide the assistance necessary to cultivate and preserve these spiritual impulses in modern art. Alfred Stieglitz's Intimate Gallery (1925-1929), Katherine Sophie Dreier's Societe Anonyme (1920-1950), and Hilla Rebay's Museum of Non-Objective Painting (1939-1952)-all in New York City-served as intermediaries in translating predominantly Eastern spiritual ideas into productive ways of being. It would be needed, each curator believed, to cultivate these spiritual protocols just to survive in a material world they held to be detrimentally bankrupt of spirit. In other words, the American institutionalization of modernism built its canon around spiritual systems of national aesthetic welfare. Crucial to these spiritual curators' respective operations would be the promotion of not just any abstraction but a radically non-objective art thought to use the inner expressions of the artist to elevate the spectator. This dissertation takes the turn-of-the-century claims of spirituality by the founders of key art institutions seriously. In doing so, I argue that esoteric forms of Eastern spirituality infused formerly Protestant centers of culture to propel a twentieth-century embrace of radically abstract modern art.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Programmable Mud: 3D Printing earth to achieve low-carbon, low-cost construction automation</title>
<link href="https://hdl.handle.net/1721.1/163545" rel="alternate"/>
<author>
<name>Curth, Alexander (Sandy) McCormick</name>
</author>
<id>https://hdl.handle.net/1721.1/163545</id>
<updated>2025-11-06T03:04:33Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Programmable Mud: 3D Printing earth to achieve low-carbon, low-cost construction automation
Curth, Alexander (Sandy) McCormick
Large-scale additive manufacturing (LSAM) with locally sourced materials, such as earth, presents a promising approach to addressing the urgent challenges of rapid urbanization and construction-related carbon emissions. &#13;
This dissertation establishes a comprehensive framework for integrating low-carbon materials, particularly minimally processed earth, with computational design methodologies and robotic fabrication processes for architectural-scale applications. Through systematic material characterization, novel testing protocols, and case studies across multiple building systems, the research demonstrates that minimally processed earthen materials can be transformed into high-performance building elements uniquely suited to local environmental conditions and design considerations. The developed computational framework employs multi-objective optimization and material-aware toolpath generation to balance structural performance, thermal comfort, embodied carbon, and construction time. &#13;
Four case studies validate this approach: (1) toolpath optimization for shell structures, (2) a hybrid floor system combining shape-optimized concrete beams with 3D-printed ceramic blocks, (3) zero-waste earthen formwork for reinforced concrete, and (4) thermally optimized wall systems for passive climate control. Life cycle assessment reveals that 3D-printed earth structures have approximately one-fifth the embodied carbon of conventional concrete and one-fiftieth that of industry-standard 3D-printed mortar. This research bridges the gap between additive computational design and material circularity, offering scalable approaches to sustainable construction that can be implemented across diverse environmental and economic contexts.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Cooling Machines:&#13;
Exploring the Heat Mitigation Effect of Urban Trees with Computer Vision</title>
<link href="https://hdl.handle.net/1721.1/163544" rel="alternate"/>
<author>
<name>Klimenko, Nikita</name>
</author>
<id>https://hdl.handle.net/1721.1/163544</id>
<updated>2025-11-06T03:07:43Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Cooling Machines:&#13;
Exploring the Heat Mitigation Effect of Urban Trees with Computer Vision
Klimenko, Nikita
As the impacts of climate change on cities become more pronounced, urban authorities are under pressure to prepare existing streetscapes for increased levels of heat stress. While many aspects of existing urban morphology have an impact on heat exposure (e.g. sky view factor, glazing levels, facade materials), they cannot be rapidly changed at large across existing urban infrastructures. Urban authorities across the world increasingly turn to planting trees as a way of cooling urban streetscapes. Urban vegetation is indeed known to have a cooling effect, primarily due to trees providing shade and preventing urban materials from heating up, as well as due to their ability to maintain their own internal temperature due to evapotranspiration. Even though the positive impacts of urban trees on thermal comfort are long known and well-studied, little work is dedicated to how these impacts vary across trees of different species and morphology. This is due to both the complexity of studying vegetation life cycles at sufficient scale, as well as due to the dispersed nature of the issue across disciplines of biology, urban climate, design, and data science. Nevertheless, this specific knowledge is vital to urban planners for deciding which trees have the most cooling effect in specific parts of the city. This thesis embraces the notion of trees as ‘cooling machines’ and dissects the diverse morphological and contextual factors that affect the role of individual trees on local urban heatscape. Leveraging a set of computer vision methodologies, including species recognition, context-aware segmentation, and photogrammetry, the thesis examines a large dataset of thermal imagery of urban trees collected in Los Angeles and Dubai to describe the impact of individual tree species, height and form, as well as spatial context on the cooling effect. Building on this approach, the thesis proposes a prototyping framework for architects to cure urban heatscapes via targeted curation of tree planting schemes, tying the visual and thermal aspects of urban greenery. This approach will allow cities to leverage the power of urban vegetation in the most efficient way, and tame urban heat in a scalable and globally affordable manner.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Co-Authoring Beyond the Human: Disordering Architectural Processes through Play and Multi-Agent Co-Existence</title>
<link href="https://hdl.handle.net/1721.1/163543" rel="alternate"/>
<author>
<name>Dundar Arifoglu, Nasibe Nur</name>
</author>
<id>https://hdl.handle.net/1721.1/163543</id>
<updated>2025-11-06T03:07:50Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Co-Authoring Beyond the Human: Disordering Architectural Processes through Play and Multi-Agent Co-Existence
Dundar Arifoglu, Nasibe Nur
This thesis reconsiders architectural authorship and the extended processes through which the built environment is shaped, using a series of playful, participatory interventions to expose the human-centric assumptions embedded in spatial decision-making. Presented as a collection of games and booklets, the work invites participants to engage with a wide spectrum of architectural processes—from site understanding and planning to permitting, construction, and post-occupancy—through the perspectives of multiple agents entangled in shared environments. These agents include beings, materials, living organisms, legal frameworks, and other forces typically excluded from spatial authorship, challenging conventional boundaries and expanding the discourse around the entangled forces and relations that shape the spaces we inhabit. A series of playful explorations opens space for friction, misalignment, and shared authorship. Each booklet engages a distinct stage of the architectural process through participatory formats that make visible the biases, exclusions, and regulatory fictions often treated as neutral. By gamifying these systems, the work reveals how architectural decision-making tends to privilege hierarchy, human control, and speed—often at the expense of multispecies co-existence. This thesis positions play as a critical lens: a way to rehearse alternative futures, to listen differently, to embody other perspectives, and to surface the black-box logics embedded in architectural norms. It invites readers and players to participate in unbuilding these assumptions. And the games evolve—with each use, each misreading, each encounter, and each agent who joins the conversation.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Objectiles Guide to Time Travel:&#13;
Re-Envisioning Building Materials as Narrative-Collecting&#13;
Object-Projectiles on a Trajectory Through Space-Time</title>
<link href="https://hdl.handle.net/1721.1/163542" rel="alternate"/>
<author>
<name>Chaussabel, Celia Quynh-Mai</name>
</author>
<id>https://hdl.handle.net/1721.1/163542</id>
<updated>2025-11-06T03:06:37Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">The Objectiles Guide to Time Travel:&#13;
Re-Envisioning Building Materials as Narrative-Collecting&#13;
Object-Projectiles on a Trajectory Through Space-Time
Chaussabel, Celia Quynh-Mai
As the architectural discipline grapples with its role in resource depletion, carbon emissions, and waste generation, there is a growing urgency to stop sourcing new materials and to reuse materials from existing buildings instead. One challenge to integrating reused materials into current building practices is technical: inventorying, deconstructing, reconditioning, and designing with reused materials is slower and more labor-intensive than with new ones. But another challenge is cultural: the materials that make up architecture are currently perceived as unmoving and single-use, with little consideration for their trajectories from raw resource to landfill. This thesis is focused on developing an aesthetic sensibility and design methodology that helps us re-envision materials as objects on a trajectory instead: Objectiles, or object-projectiles. Objectiles are objects on an adventure across space-time to collect as many uses as possible. Rather than remaining associated with one primary use, Objectiles are impressionable, bearing ambiguous traces of all the uses they encounter as they re-circulate. Through the aesthetic qualities that hint at their many uses, Objectiles invite us to time travel - to imagine the potential past and future narratives that may precede or follow their present physical state. Embedding the aesthetics of Objectiles into architecture can lead to the development of a new collective consciousness of the materials that surround us. They can make us aware that all the objects around us have trajectories that extend beyond their present state, and lead to an alternative material culture of greater care in how we use, re-circulate, and dispose of all objects.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Problem-Independent Regrets on Expectation-Dependent Multi-Armed Bandits</title>
<link href="https://hdl.handle.net/1721.1/163541" rel="alternate"/>
<author>
<name>Ai, Rui</name>
</author>
<id>https://hdl.handle.net/1721.1/163541</id>
<updated>2025-11-06T03:07:16Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Problem-Independent Regrets on Expectation-Dependent Multi-Armed Bandits
Ai, Rui
The independence axiom (IA) proposed by Von Neumann and Morgenstern [50] is the cornerstone of the expected utility theory. However, some empirical experiments show that the IA is often violated in the real world. We propose a new kind of multi-armed bandit problem where the expectation of outcomes may influence the agent’s utility which we call expectation-dependent multi-armed bandits and rationalize the choice of agents in Machina’s paradox lacking the IA. We design provably efficient algorithms with low minimax regrets and show their consistency of time horizon T with corresponding regret lower bounds, revealing statistical optimality. Furthermore, as we first consider bandits whose corresponding utility depends on both reality and expectation, it provides a bridge between machine learning and economic behavior theory, shedding light on how to interpret some counterintuitive economic scenarios, like bounded rationality explored by Zhang et al. [54].
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Differentially Private Synthetic Data Generation for Relational Databases</title>
<link href="https://hdl.handle.net/1721.1/163540" rel="alternate"/>
<author>
<name>Alimohammadi, Kaveh</name>
</author>
<id>https://hdl.handle.net/1721.1/163540</id>
<updated>2025-11-06T03:06:32Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Differentially Private Synthetic Data Generation for Relational Databases
Alimohammadi, Kaveh
Existing differentially private (DP) synthetic data generation mechanisms typically assume a single-source table. In practice, data is often distributed across multiple tables with relationships across tables. This study presents the first-of-its-kind algorithm that can be combined with \emph{any} existing DP mechanisms to generate synthetic relational databases. The algorithm iteratively refines the relationship between individual synthetic tables to minimize their approximation errors in terms of low-order marginal distributions while maintaining referential integrity; consequently eliminates the need to flatten a relational database into a master table (saving space), operates efficiently (saving time), and scales effectively to high-dimensional data. We provide both DP and theoretical utility guarantees for our algorithm. Through numerical experiments on real-world datasets, we demonstrate the effectiveness of our method in preserving fidelity to the original data.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>VLEO-Bench: A Framework to Evaluate Vision-Language Models for Earth Observation Applications</title>
<link href="https://hdl.handle.net/1721.1/163539" rel="alternate"/>
<author>
<name>Zhang, Chenhui</name>
</author>
<id>https://hdl.handle.net/1721.1/163539</id>
<updated>2025-11-06T03:07:20Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">VLEO-Bench: A Framework to Evaluate Vision-Language Models for Earth Observation Applications
Zhang, Chenhui
Large Vision-Language Models (VLMs) have demonstrated impressive performance on complex tasks involving visual input with natural language instructions. However, it remains unclear to what extent capabilities on natural images transfer to Earth observation (EO) data, which are predominantly satellite and aerial images less common in VLM training data. In this work, we propose VLEO-Bench, a comprehensive evaluation framework to quantify the progress of VLMs toward being useful tools for EO data by assessing their abilities on scene understanding, localization and counting, and change detection tasks. Motivated by real-world applications, our framework includes scenarios like urban monitoring, disaster relief, land use, and conservation. We discover that, although state-of-the-art VLMs like GPT-4V possess extensive world knowledge that leads to strong performance on open-ended tasks like location understanding and image captioning, their poor spatial reasoning limits usefulness on object localization and counting tasks.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>She Swims in Silence: Spatial Narrative, Women's labor in Contemporary Art</title>
<link href="https://hdl.handle.net/1721.1/163538" rel="alternate"/>
<author>
<name>Feng, Haozhen</name>
</author>
<id>https://hdl.handle.net/1721.1/163538</id>
<updated>2025-11-06T03:06:21Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">She Swims in Silence: Spatial Narrative, Women's labor in Contemporary Art
Feng, Haozhen
This thesis investigates the collective lives of Chinese women sent to Xinjiang in state-led migration after 1949 and the erasure of their gendered narratives. Drawing on a unique family history and archival evidence, the thesis reveals how the personal identities of these female “Aid to Xinjiang” participants were stripped away and subsumed under the grand socialist nation-building myth. Through practice-based artistic research, the project attempts to restore their lost voices and unacknowledged suffering and labor, framing the exhibition as a form of praxis. By analyzing the exhibition alongside case studies and critical analysis, the thesis, inspired by Bernard Stiegler’s theory of the “history of representational forms” and interwoven with ideas from philosophers like Judith Butler and Nicholas Mirzoeff, interrogates the gendered silences in official history and highlights the tension between state mythologies and personal memories. In doing so, the exhibition as an interdisciplinary form of research not only restores agency to a silenced group of women, but also demonstrates how artistic practice can serve as an alternative historiography to challenge dominant narratives and recover marginalized voices.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evaluation of Universal Docking Solutions for Autonomous&#13;
Underwater Vehicles</title>
<link href="https://hdl.handle.net/1721.1/163537" rel="alternate"/>
<author>
<name>Pryal, Erik Jeffrey</name>
</author>
<id>https://hdl.handle.net/1721.1/163537</id>
<updated>2025-11-06T03:06:38Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Evaluation of Universal Docking Solutions for Autonomous&#13;
Underwater Vehicles
Pryal, Erik Jeffrey
Due to their energy-constrained nature, Autonomous Underwater Vehicles (AUVs) need effective docking and charging stations to extend their mission durations. However, diverse AUV designs challenge the universal compatibility of docking stations. This study provides a framework for understanding what makes a docking station universal and offers two potential solutions: the Tapered Funnel Docking Station and the Magnetic Hub Docking Station. The Tapered Funnel features a conical entry that progressively narrows to accommodate various AUV diameters. The Magnetic Hub passively secures the AUV using magnetic forces and an external appendage guided into position by a square duct. MATLAB simulations evaluate these two charging station designs for compatibility with AUVs, alignment capabilities, and docking efficacy under realistic conditions. Both designs are tested through Monte Carlo simulations to address varying AUV approach conditions, showcasing their potential as universally feasible solutions. Future exploration into material durability, sensor integration, and power transfer efficiency will refine these designs for field applicability. This research lays the groundwork for universal docking standards and proposes adaptable solutions to alleviate operational limitations in underwater missions.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dowel-laminated timber from waste lumber offcuts: &#13;
Towards structural component circularity</title>
<link href="https://hdl.handle.net/1721.1/163536" rel="alternate"/>
<author>
<name>Blowes, Rachel</name>
</author>
<id>https://hdl.handle.net/1721.1/163536</id>
<updated>2025-11-06T03:06:20Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Dowel-laminated timber from waste lumber offcuts: &#13;
Towards structural component circularity
Blowes, Rachel
In the context of the global climate crisis, there is a need to develop low embodied carbon building systems. Moreover, construction and demolition generate substantial amounts of waste. The use of salvaged materials for structural applications presents the opportunity to divert this waste while reducing the embodied carbon of new structural components. This thesis proposes a typology for dowel-laminated timber (DLT) slabs built up from waste lumber offcuts. A mechanical model for a segmented DLT system composed of geometrically heterogeneous offcuts is developed. Prototypes of this mass timber system are fabricated and tested to observe their failure behavior and to evaluate the mechanical model. A computational workflow is introduced which employs algorithmic methods for inventory assignment and structural optimization to design slabs which meet deflection requirements under loading. These approaches are undertaken to evaluate whether DLT systems can leverage the irregularity of salvaged lumber dimensions to produce structurally efficient forms.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Allopoietics in Real Time: Unfolding Among Art, Publics, Space, and Time</title>
<link href="https://hdl.handle.net/1721.1/163535" rel="alternate"/>
<author>
<name>Aubry, Vinzenz</name>
</author>
<id>https://hdl.handle.net/1721.1/163535</id>
<updated>2025-11-06T03:06:58Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Allopoietics in Real Time: Unfolding Among Art, Publics, Space, and Time
Aubry, Vinzenz
This thesis proposes a conceptual lens for understanding contemporary generative arts by introducing the terms Allopoietics and Liquid Media. Building on generative and participatory art, it focuses on the real-time processes among artworks, publics, spaces, and time through which meaning dynamically emerges. Drawing on the author’s artistic works—Conjunktion, Looking at the Sun, and Public Eyes—as well as critical engagement with hermeneutics, process philosophy, and media theory, this thesis explores how agency is distributed across these processes, offering a means to reconsider all elements as equally generative. Allopoietics, derived from cybernetics, describes the generative capacity of systems to produce outcomes beyond the sum of their actants, emphasizing collective unfolding over isolated creation. Liquid Media expands the notion of interfacing beyond traditional media to include publics, space, and time, conceptualizing these as mutable and entangled actants. These concepts outline an Aesthetics of Real Time that evaluates the dynamic relations among increasingly immediate systems. By proposing these new terms, the thesis invites a shift in perspective from object to process: viewing artworks not as stable materializations but as parts of real-time systems of collective meaning-making. While emerging from an artistic practice, this conceptual framework resonates with insights from contemporary sociology and cultural studies, where notions of fluidity, distributed agency, and relationality increasingly shape our understanding of complex systems and realities.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Limits of Longevity</title>
<link href="https://hdl.handle.net/1721.1/163534" rel="alternate"/>
<author>
<name>Rodriguez, Christopher W.</name>
</author>
<id>https://hdl.handle.net/1721.1/163534</id>
<updated>2025-11-06T03:04:13Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">The Limits of Longevity
Rodriguez, Christopher W.
Do all animals age? Although aging seems to be a widespread phenomenon, some demographic studies have failed to find evidence of aging in certain species, including some highly regenerative species of planarians and Hydra that reproduce through asexual fission. However, all demographic studies have limits on observation times and sample sizes, so it is unknown if these failures were because of an actual absence of aging or these inherent study limitations. Some argue that these species must be ageless. Because of pressures that result from the lack of a clean division between the germ line and the soma in fissiparous organisms, agelessness becomes necessary as a prerequisite of this kind of reproductive strategy. Others argue that fundamental theories of the evolutionary biology of aging absolutely preclude agelessness. Even putting evolutionary arguments aside, some mathematical models of cellular competition and senescence argue that agelessness is impossible mechanistically in multicellular organisms. In this work, I address evolutionary and mechanistic arguments for and against agelessness. I develop mathematical models of the Disposable Soma Theory that incorporate facets of the arguments for agelessness in asexual fissioning organisms. I construct models of mutation accumulation and drift within an individual and explore how this genetic decay could manifest in the mortality rates. I use these models to understand if aging is inevitable generally and apply them to planarians and Hydra to seek to estimate the likelihood of aging more narrowly in those specific cases. Contrary to other work, I find that agelessness (defined as non-increasing mortality rates in a population) is indeed possible as the optimal evolutionary strategy for multicellular organisms. However, the evolution and mechanistic realization of agelessness requires conditions that are unlikely to be met in any existing species. In the case of planarians and Hydra, they likely do not face the right kind of evolutionary pressure to completely avoid aging. Even if they do face necessary evolutionary pressure, intraindividual genetic decay will almost certainly induce increasing mortality on the population with little recourse. Therefore, these species likely do age, although they could have median lifespans on the order of hundreds or perhaps even thousands of years, which would make detecting aging in any given population study quite difficult indeed.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fundamental representations of regions and interactions in spatial&#13;
transcriptomics</title>
<link href="https://hdl.handle.net/1721.1/163533" rel="alternate"/>
<author>
<name>Maher, Kamal M.</name>
</author>
<id>https://hdl.handle.net/1721.1/163533</id>
<updated>2025-11-06T03:04:36Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Fundamental representations of regions and interactions in spatial&#13;
transcriptomics
Maher, Kamal M.
While cells are often considered the fundamental unit of biology, it is their spatial coordination that gives rise to the tissue architectures underlying both health and disease. Spatial transcriptomics technologies offer a unique window into this coordination by simultaneously capturing the spatial and molecular identities of individual cells, providing unprecedented insight into tissue organization. However, the computational landscape for analyzing tissue structure remains fragmented, with a wide array of disparate methods. In this work, we aim to distill these approaches into a unified quantitative framework for analyzing tissue architecture. Tissue structure can be represented in terms of anatomical regions as well as the cellcell interactions that occur within them. For regional tissue organization, many existing methods—including those based on probabilistic models and graph neural networks—ultimately perform a form of smoothing, or local averaging of gene expression across neighboring cells. This process emphasizes large-scale spatial variation and enables standard single-cell analysis workflows, such as clustering and trajectory inference, to be applied in spatial contexts. However, we find that naive smoothing introduces artifacts that obscure meaningful spatial features. To address this, we introduce a minimal but powerful modification: subsampling within each neighborhood prior to averaging. This approach enhances spatial feature resolution and generalizes conventional analyses to spatial features: clustering identifies multicellular regions; data integration aligns spatial regions across samples and technologies; and trajectory inference captures spatial gradients. We also show that this subsampling strategy improves the performance of more complex downstream methods. To further generalize our framework, we formalize the joint analysis of tissue regions and multiscale cell-cell interactions using signal processing over graphs: low-frequency components represent regional gene expression patterns across a tissue mesh; high-frequency components capture fine-scale, cell-cell interactions; and mid-frequency signals correspond to boundaries between regions and diffusive signaling. By interpreting spatial gene expression in this spectral framework, we provide a principled way to bridge conceptual and computational perspectives on tissue structure. Ultimately, this work serves as both a theoretical foundation to understand existing methods and a roadmap for developing future approaches to quantitatively describe molecular tissue architecture.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Developing a Functional in Vitro Model of the Neuromuscular Interface</title>
<link href="https://hdl.handle.net/1721.1/163532" rel="alternate"/>
<author>
<name>Schwendeman, Laura A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163532</id>
<updated>2025-11-06T03:06:55Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Developing a Functional in Vitro Model of the Neuromuscular Interface
Schwendeman, Laura A.
The neuromuscular system is responsible for the coordination of movement throughout the body, and while research has revealed many of the mechanisms involved in the function of the neuromuscular system, there are still many gaps in our understanding of how all of the components of the system work and how they are affected by environmental factors and disease. This work focuses on developing methods and an in vitro model for studying a subsystem of the neuromuscular system known as the neuromuscular junction (NMJ), which is the connection between skeletal muscle and motor neurons and is relevant in many neuromuscular degenerative diseases. This work identifies that current in vitro NMJ models are cohesively lacking the ability to support long-term, functionally contractile muscle tissue while providing compartmentalization and clear optical access for live imaging of muscle and motor neuron co-cultures. This work therefore presents STAMP, a microgroove patterning method for creating aligned, more physiologically relevant, functional, and optically accessible skeletal muscle tissue cultures on top of fibrin hydrogels. Through investigating a series of different sizing parameters, STAMP is shown to effectively align mouse and human skeletal muscle monolayers in vitro and influence the direction of muscle contraction under electrical and optogenetic stimulation while preserving skeletal muscle tissue integrity and viability. The STAMP approach provides a way to mold hydrogels and the morphology of muscle tissue and will be beneficial for addressing the need for compliant and optically clear substrates in modeling the neuromuscular junction.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Turning and Turbulence: A Comparative Study of Agility and Fluid Mechanics in Men’s and Women’s Soccer</title>
<link href="https://hdl.handle.net/1721.1/163531" rel="alternate"/>
<author>
<name>Sonner, Jessica E.</name>
</author>
<id>https://hdl.handle.net/1721.1/163531</id>
<updated>2025-11-06T03:06:22Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Turning and Turbulence: A Comparative Study of Agility and Fluid Mechanics in Men’s and Women’s Soccer
Sonner, Jessica E.
Female soccer players demonstrate high levels of agility but remain underrepresented in research and experience anterior cruciate ligament (ACL) tears two to eight times more frequently than their male counterparts [1]. These injuries are often associated with high-torsion movements at the knee, such as quick change-of-direction maneuvers in soccer [2]. To examine gender-based differences in agility, this study introduces an in-game metric based on change-of-direction speeds, derived from center-ofmass tracking data from the 2022 Men’s and 2023 Women’s FIFA World Cups. Results show that across positions, ball proximity, and game segments, female athletes tend to change direction both faster and more frequently than male athletes—supporting current injury hypotheses and informing gender-specific cleat design considerations. Beyond individual movement, this study also examines collective team behavior through a fluid mechanics lens. No significant gender differences were found in power spectral densities or second-order structure functions, suggesting symmetry in the underlying coordination dynamics. A direct cascade was observed in the 0–15m range, indicating a consistent transfer of energy across spatial scales. Team dispersion and the Area-Dominant Spread Index correlated with structure function slopes, bridging spatial metrics with turbulence-based models of group behavior.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Deciphering Features of Protective or Maladaptive Cellular Immunity in the Airways Following Primary and Repeated Pathogen Exposure</title>
<link href="https://hdl.handle.net/1721.1/163530" rel="alternate"/>
<author>
<name>Bromley, Joshua David</name>
</author>
<id>https://hdl.handle.net/1721.1/163530</id>
<updated>2025-11-06T03:04:31Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Deciphering Features of Protective or Maladaptive Cellular Immunity in the Airways Following Primary and Repeated Pathogen Exposure
Bromley, Joshua David
The human respiratory tract is constantly subject to environmental stressors and perturbations that cause deviations from homeostatic conditions. The airway’s cellular constituents – epithelial, stromal, and immune cells – maintain local and global homeostasis by facilitating gas exchange and providing a barrier against noxious environmental agents (e.g., xenobiotics, allergens, toxins, and microbes). Infection with viral, microbial, and eukaryotic pathogens can disrupt airway homeostasis, leading to local and systemic inflammation, which can either contribute to the clearance or persistence of the pathogen. Prior antigenic exposure - prophylactically or from a previous infection - can promote transient and long-lived changes in cellular epigenetics, gene expression networks, and cell type composition that may contribute to protective (or maladaptive) immunity; however, we lack a complete understanding of the pathogen and cellular determinants that modulate immunity upon reinfection. In this thesis, we employed single-cell RNA-seq (scRNA-seq), computational methods, and microbial assays to discover the host and pathogen determinants governing airway homeostasis during primary infection and reinfection at barrier sites where the infection begins and may persist: the nasopharynx, airways, and lung parenchyma. First, we leveraged scRNA-seq to identify the cellular and molecular features of mild, moderate, and severe COVID-19, revealing that persons with severe COVID-19 have blunted anti-viral immunity in the nasopharynx. We further extended these findings by profiling nasopharyngeal swabs from vaccinated and unvaccinated individuals across three waves of SARS-CoV-2 variants, revealing shifts in viral tropism and that intramuscular COVID-19 vaccines promote the recruitment of putative antigen presenting macrophages to the nasal mucosa. Next, we used rhesus macaques to interrogate temporal host-pathogen interactions during SARS-CoV-2 infection and reinfection in the lower respiratory tract. This work identified innate training-like gene programs among myeloid populations that provided enhanced protection against SARS-CoV-2 reinfection. Finally, we used cynomolgus macaques as a model to study Mtb infection and reinfection, demonstrating that CD4+ T cells are required to restrict bacterial growth and induce protective immunomodulatory gene programming and cell-cell interaction networks in pulmonary granulomas formed following Mtb reinfection. These findings extend beyond long-held paradigms of protective TB immunity, revealing that CD4+ T cells regulate pro- and anti-inflammatory granuloma equilibria. Collectively, the work presented in this thesis highlights the utility of single-cell genomics for studying respiratory infection- and immuno-biology and provides a framework for contextualizing pathogen-induced deviations from biological homeostasis in the airways, which has implications for the development of prophylactics and therapeutics.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Expansion Microscopy of Extracellular Space for Light Microscopy-Based Connectomic Analysis</title>
<link href="https://hdl.handle.net/1721.1/163529" rel="alternate"/>
<author>
<name>Emenari, Amauche</name>
</author>
<id>https://hdl.handle.net/1721.1/163529</id>
<updated>2025-11-06T03:04:20Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Expansion Microscopy of Extracellular Space for Light Microscopy-Based Connectomic Analysis
Emenari, Amauche
In this dissertation, we present an exploratory methodology, termed expansion microscopy of extracellular space (ExECS), designed to enhance the visualization of the extracellular space (ECS) within aldehyde-fixed tissue. This technique leverages the principles of expansion microscopy (ExM), a method that facilitates nanoscale imaging on conventional microscopes through physical magnification of specimens, thereby supporting improved visualization of various cellular and tissue components including proteins, nucleic acids, and lipids 1. The ECS forms a continuous environment between cells2. Its presence throughout neural tissue makes it an attractive target for contrast-based techniques such as shadow imaging, where the ECS is selectively labeled to produce negative contrast, revealing cell shapes and boundaries as unlabeled silhouettes within a labeled background. Although ECS delineation in fixed tissue is limited by the fidelity of fixation and may not fully reflect its live-state structure, the resulting contrast with the intracellular environment may offer useful contrast for investigating neural morphology and connectivity, offering a useful approximation of network organization. A key component of the ExECS methodology is the introduction of a customengineered ECS Filler solution. This formulation, detailed later, includes a macromolecular probe intended to serve as a proxy for the ECS. When applied to aldehyde-fixed tissue, the filler is designed to diffuse throughout the sample, preferentially occupying extracellular compartments while remaining largely excluded from intracellular regions. This selective distribution is expected to persist even in areas where aldehyde fixation may have increased membrane permeability. This diffusion behavior is presumed to result from a combination of size-based exclusion and intermolecular interactions between the hyaluronan polymers, which form the main component of the filler solution, and the plasma membrane. The constituent hyaluronan is functionalized with amine groups to enable covalent crosslinking and with azide groups to allow fluorescent tagging via click chemistry. These modifications are intended to enable the ECS filler to act as a contrast agent by labeling the extracellular space, providing a foundation for a shadow-based imaging strategy to delineate morphology of cellular structures. In parallel, we introduce a lipid-targeted form of ExM, termed membrane expansion microscopy (mExM). This approach employs a custom chemical tag that enables nanoscale optical imaging of lipid membranes using a lipid-optimized expansion protocol. mExM, via a novel post-expansion antibody labeling protocol, enables protein-lipid relationships to be imaged in intracellular organelles. This technique may offer new opportunities to examine aspects of neural circuitry by linking cellular morphology with molecular identity. Together, ExECS and mExM offer a potential basis for a light microscopy-based framework for connectomic reconstructions. Unlike traditional electron microscopy approaches, which are labor-intensive and low-throughput3, this strategy aims to improve throughput in mapping of neuronal morphology with enhanced resolution that surpasses diffraction limitations. With the aim of bridging the gap between tissue ultrastructure and optical accessibility, this work may contribute to efforts toward scalable, high-resolution analysis of neural tissue organization.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Decoding Disease Drivers Through Single-Cell Omics and Scalable Phenotypic Screens</title>
<link href="https://hdl.handle.net/1721.1/163528" rel="alternate"/>
<author>
<name>Liu, Nuo</name>
</author>
<id>https://hdl.handle.net/1721.1/163528</id>
<updated>2025-11-06T03:02:41Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Decoding Disease Drivers Through Single-Cell Omics and Scalable Phenotypic Screens
Liu, Nuo
At the heart of any human disease is an imbalance between normal and aberrant physiological processes— a disproportion between hypo-immunity and hyperimmunity—a lack of homeostasis. In many cases, a more comprehensive understanding of the molecular basis underlying disease progression and therapeutic failure is still required to devise new strategies for improving patient outcomes. Technological advancements in biomedical research, especially in single-cell omics (e.g. single-cell RNA sequencing, single-cell spatial profiling) have given us unprecedented power to decipher the intricate cellular and molecular features that maintain—or disrupt—this balance. However, validating the causality of these features remains a huge challenge, as the wealth of data often results in a considerable number of hypotheses to test. In this thesis, I explore applications of single-cell genomics tools to understand cellular features associated with disease, with a particular focus on tuberculosis (TB). I then present a potential solution for performing phenotypic screens at scale. In the first part, I applied single-cell RNA sequencing and analysis to human lung samples from a TB-endemic region in South Africa. Using contrastive analysis, I identify key cell populations that are differentially abundant between TB-diseased and TB-negative lung including several neutrophils, macrophages, and fibroblasts subsets. I discovered a de novo gene program highly enriched in the MMP1+CXCL5+ Fibroblast that correlates with TB burden in a non-human primates (NHP) granuloma dataset, supporting the importance of this subset in TB. In a collaborative effort, we validate that this MMP1+CXCL5+ Fibroblast localizes to TB granuloma on independent TB-diseased lung tissues using immunohistochemistry assays and recapitulate the induction of this population from lung-derived fibroblast through in vitro stimulation experiment with M.tb. I further report a SPP1+ macrophage population that is enhanced in TB diseased lungs through single-cell analysis. Moreover, I identified a prominent cross talk between SPP1+ macrophages and fibroblasts in TB diseased lung that mimics similar observations in cancer and fibrosis, supporting an important role for this axis in TB. These distinctive cell populations could serve as potential targets for novel host-directed therapies in tuberculosis. In the second part, I developed a method to compress small molecule phenotypic screens by designing randomized drug pools with replicates of distinct candidates across different drug pools. Our team demonstrated that linear regression models can be applied to computationally deconvolute the individual hits, enabling the identification of top effectors for downstream validation. We benchmarked and demonstrated the efficacy of this approach in a cost-effective imaging platform and then moved into applications on pancreatic ductal adenocarcinoma (PDAC), where we discovered a new perturbation response signature to IL-4/IL-13 with prognostic value for patient survival. We also showcased the utility of this tool on understanding immunomodulation effects in heterogenous mixtures of primary blood cells. Together, this thesis describes novel cellular features important to TB in human lungs, offering new insights that complement existing knowledge from animal models. It also presents a bold, yet effective strategy to scale up phenotypic screen across different biological systems, providing a much-needed solution that bridges the translational gap between human disease and experimental model.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Leaky Vessels</title>
<link href="https://hdl.handle.net/1721.1/163527" rel="alternate"/>
<author>
<name>Cong, Frank (Haotian)</name>
</author>
<id>https://hdl.handle.net/1721.1/163527</id>
<updated>2025-11-06T03:07:13Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Leaky Vessels
Cong, Frank (Haotian)
This thesis serves as a written synthesis of my art practice. It starts with Louis Pasteur’s swan neck flask, Robert Boyle’s air pump, the theater of proof, and cabinets of natural historians to discuss the intentional gesture of containment, exclusion, and controlled permeability in scientific containers and the knowledge production paradigm behind them. I argue that these containers possess another intrinsic gesture – to leak – that opens space for social and cultural dimensions to engage. I propose “leaky vessels” as an analytical tool and a methodology that foregrounds the tension between intentional and unintentional in order to attend to the issues of care, belief, and labor that arise within this dynamic. Chapter 2 develops the concept of “leaky” in three aspects – aesthetic intervention, historical residue, institutional sabotage – by analyzing art practices by Eve Andrée Laramée, Oron Catts and Ionat Zurr, Candice Lin, Maria Thereza Alves, Critical Art Ensemble, and Claire Pentecost. Each case demonstrates how alternative approaches to apparatuses can expose and unsettle the systems of control that govern knowledge authority, allowing seepage, contamination, and embodied histories to return to spaces designed to exclude them. Chapters 3 and 4 turn inward to examine my own art practice, Guardian and The Guarded (2024), RapidRise (2024), and Sweat Dough (2025). In Chapter 3, I discuss the experience of entering the biomaker space at MIT and cultivating animal cells in a pendant, interrogating how care, proximity, and cosmology might challenge the lab’s sterile and utilitarian logic. Chapter 4 discusses the other two projects that operate outside the lab, where I investigate how bodily entanglement with dough fermentation can leak into the broader context of food cultures, labor histories, and symbolic inheritance. Together, these chapters propose a practice that embraces contamination and relationality. Those that leak in and leak out are precisely where new layers of meaning reside.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Data-Driven and Dynamically Feasible Trajectory Generation for Real-Time Powered Descent Guidance and Robotic Exploration</title>
<link href="https://hdl.handle.net/1721.1/163526" rel="alternate"/>
<author>
<name>Briden, Julia</name>
</author>
<id>https://hdl.handle.net/1721.1/163526</id>
<updated>2025-11-06T03:04:07Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">Data-Driven and Dynamically Feasible Trajectory Generation for Real-Time Powered Descent Guidance and Robotic Exploration
Briden, Julia
Increasingly complex and high-mass planetary missions require autonomous long-horizon trajectory generation to achieve dynamically feasible powered descent guidance. While analytical and indirect methods are computationally efficient, significant simplifications of the dynamics and constraints are required for both problem formulations. Numerical optimization algorithms enable minimum-energy trajectory generation subject to system dynamics and safety constraints but currently remain computationally infeasible on flight-grade processors, taking seconds to minutes to compute a single trajectory. The objective of this dissertation is to develop new algorithms to advance the state of the art in trajectory optimization and planning for autonomous systems. Due to the limited computational abilities of radiation-hardened processors and an increased need for spacecraft and robotic autonomy, specialized algorithms capable of running in realtime constitute enabling technologies for space exploration. Three major contributions are developed in this dissertation. First, a transformer neural network-based algorithm is created to predict the tight constraints that recover the solution and parameter sets for constrained optimization problems. By training on prior runs of the numerical optimization solver, the learned mapping can construct a reduced problem formulation that recovers the optimal solution while reducing runtime by up to an order of magnitude. Second, a method to embed problem-specific information into the neural network training process was developed. By embedding the Lagrangian and Lagrangian gradient merit functions into the training process, neural network-generated control policies are biased toward constraint satisfaction. Third, an autonomous hybrid targeting and guidance algorithm was designed to utilize probabilistic risk maps and numerical optimization to select and navigate to minimum-risk landing sites. Applications in planetary powered descent and landing, as well as rover path planning, are used to benchmark algorithm performance.
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Situation Awareness Framework for Explainable AI (SAFE-AI) and Human Factors Considerations for XAI Systems</title>
<link href="https://hdl.handle.net/1721.1/163525" rel="alternate"/>
<author>
<name>Sanneman, Lindsay</name>
</author>
<author>
<name>Shah, Julie A</name>
</author>
<id>https://hdl.handle.net/1721.1/163525</id>
<updated>2026-04-14T03:27:12Z</updated>
<published>2022-06-22T00:00:00Z</published>
<summary type="text">The Situation Awareness Framework for Explainable AI (SAFE-AI) and Human Factors Considerations for XAI Systems
Sanneman, Lindsay; Shah, Julie A
Recent advances in artificial intelligence (AI) have drawn attention to the need for AI systems to beunderstandable to human users. The explainable AI (XAI) literature aims to enhance human under-standing and human-AI team performance by providing users with necessary information about AI sys-tem behavior. Simultaneously, the human factors literature has long addressed importantconsiderations that contribute to human performance, including how to determine human informa-tional needs, human workload, and human trust in autonomous systems. Drawing from the human fac-tors literature, we propose the Situation Awareness Framework for Explainable AI (SAFE-AI), a three-level framework for the development and evaluation of explanations about AI system behavior. Ourproposed levels of XAI are based on the informational needs of human users, which can be deter-mined using the levels of situation awareness (SA) framework from the human factors literature. Basedon our levels of XAI framework, we also suggest a method for assessing the effectiveness of XAI sys-tems. We further detail human workload considerations for determining the content and frequency ofexplanations as well as metrics that can be used to assess human workload. Finally, we discuss theimportance of appropriately calibrating user trust in AI systems through explanations along with othertrust-related considerations for XAI, and we detail metrics that can be used to evaluate user trust inthese systems.
</summary>
<dc:date>2022-06-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Remove hydrogen and store it too: an acid-in-clay based electro-chemical solution</title>
<link href="https://hdl.handle.net/1721.1/163524" rel="alternate"/>
<author>
<name>Kim, Kyung-Shik</name>
</author>
<author>
<name>Park, Jin-Sung</name>
</author>
<author>
<name>Yoon, Young-Chul</name>
</author>
<author>
<name>Kim, Jinwoo</name>
</author>
<author>
<name>Li, Ju</name>
</author>
<author>
<name>Yildiz, Bilge</name>
</author>
<author>
<name>Tasan, Cemal Cem</name>
</author>
<id>https://hdl.handle.net/1721.1/163524</id>
<updated>2026-04-14T03:27:14Z</updated>
<published>2024-11-14T00:00:00Z</published>
<summary type="text">Remove hydrogen and store it too: an acid-in-clay based electro-chemical solution
Kim, Kyung-Shik; Park, Jin-Sung; Yoon, Young-Chul; Kim, Jinwoo; Li, Ju; Yildiz, Bilge; Tasan, Cemal Cem
Extracting hydrogen from metallic components can open up a new pathway for preventing hydrogen embrittlement. To this end, we propose an electrochemically driven, all-solid method for hydrogen control, capable of both extracting and storing hydrogen simultaneously. In this approach, we employ acid-in-clay as a proton conducting electrolyte at room temperature. Through this electrochemical treatment, hydrogen is efficiently extracted from pre-charged steels, thereby restoring their tensile properties and preventing embrittlement. Moreover, it has been confirmed that the extracted hydrogen can be efficiently collected at the counter electrode, demonstrating the significant advantages of the process.
</summary>
<dc:date>2024-11-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Contrasting interchain order and mixed ionic–electronic conduction in conjugated polymers: an isoindigo case study</title>
<link href="https://hdl.handle.net/1721.1/163523" rel="alternate"/>
<author>
<name>Meacham, Rebecca F</name>
</author>
<author>
<name>Roh, Heejung</name>
</author>
<author>
<name>Cunin, Camille E</name>
</author>
<author>
<name>Lee, Eric R</name>
</author>
<author>
<name>Li, Wenhao</name>
</author>
<author>
<name>Zhao, Yan</name>
</author>
<author>
<name>Samal, Sanket</name>
</author>
<author>
<name>Gumyusenge, Aristide</name>
</author>
<id>https://hdl.handle.net/1721.1/163523</id>
<updated>2026-04-14T03:27:13Z</updated>
<published>2024-10-22T00:00:00Z</published>
<summary type="text">Contrasting interchain order and mixed ionic–electronic conduction in conjugated polymers: an isoindigo case study
Meacham, Rebecca F; Roh, Heejung; Cunin, Camille E; Lee, Eric R; Li, Wenhao; Zhao, Yan; Samal, Sanket; Gumyusenge, Aristide
In mixed ionic–electronic conductive polymers, electronic conduction is optimal in tightly packed flat chains, while ionic conduction benefits from free volume accommodating large ions. To this end, polymers with high crystallinity are often excluded from structure–property studies of high-performing mixed conductors due to their unbalanced transport, which favors electronic charges over ionic ones. Herein, we investigated how mixed conduction can be achieved in ordered conjugated polymers by systematically combining interchain order with side chain engineering. We synthesized a series of isoindigo (IID)-based copolymers with varying amounts of aliphatic and hydrophilic side chains and examined the impact of interchain order on mixed conduction. Through crystallographic, spectro-electrochemical, and molecular dynamics studies, we demonstrated that systematically introducing hydrophilic side chains reduces the bulk order and long-range aggregation by increasing chain flexibility while preserving the interchain stacking distances within crystalline domains. Testing these IID polymers in transistor devices revealed that ion insertion and device transconductance strongly depend on the amount of hydrophilic side chains. We demonstrated that glycol side chains can enhance mixed conduction while maintaining interchain order. Our findings suggest that the IID system is promising for designing polymers that can accommodate ionic species without compromising the chain ordering required for electronic conduction.
</summary>
<dc:date>2024-10-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>The simulation of a multi-product, multi-department factory</title>
<link href="https://hdl.handle.net/1721.1/163522" rel="alternate"/>
<author>
<name>Levy, Donald Stephen.</name>
</author>
<id>https://hdl.handle.net/1721.1/163522</id>
<updated>2025-11-05T05:32:12Z</updated>
<published>1964-01-01T00:00:00Z</published>
<summary type="text">The simulation of a multi-product, multi-department factory
Levy, Donald Stephen.
Thesis: B.S., Massachusetts Institute of Technology, School of Industrial Management, 1964
</summary>
<dc:date>1964-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Comparative elastic and plastic analysis and design of steel frames</title>
<link href="https://hdl.handle.net/1721.1/163521" rel="alternate"/>
<author>
<name>Padilla Valenzuela, Rodolfo Augusto.</name>
</author>
<id>https://hdl.handle.net/1721.1/163521</id>
<updated>2025-11-05T05:32:09Z</updated>
<published>1960-01-01T00:00:00Z</published>
<summary type="text">Comparative elastic and plastic analysis and design of steel frames
Padilla Valenzuela, Rodolfo Augusto.
Thesis: B.S., Massachusetts Institute of Technology, Department of Civil and Sanitary Engineering, 1960
</summary>
<dc:date>1960-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Dynamics of torpedo depth control</title>
<link href="https://hdl.handle.net/1721.1/163520" rel="alternate"/>
<author>
<name>Carleton, John Thomas.</name>
</author>
<id>https://hdl.handle.net/1721.1/163520</id>
<updated>2025-11-05T05:14:46Z</updated>
<published>1992-01-01T00:00:00Z</published>
<summary type="text">Dynamics of torpedo depth control
Carleton, John Thomas.
Thesis: M.S., Massachusetts Institute of Technology, Department of Mechanical Engineering, 1992; Includes bibliographical references (leaf 72).
</summary>
<dc:date>1992-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantum theory of mode locking.</title>
<link href="https://hdl.handle.net/1721.1/163519" rel="alternate"/>
<author>
<name>Lang, W. R.
            (W. Roy)</name>
</author>
<id>https://hdl.handle.net/1721.1/163519</id>
<updated>2025-11-05T04:05:42Z</updated>
<published>1971-01-01T00:00:00Z</published>
<summary type="text">Quantum theory of mode locking.
Lang, W. R.
            (W. Roy)
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Physics, 1971; Vita.; Bibliography: leaves 88-90.
</summary>
<dc:date>1971-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>An investigation of the engineering aspects of a wind tunnel magnetic suspension system</title>
<link href="https://hdl.handle.net/1721.1/163518" rel="alternate"/>
<author>
<name>Chrisinger, John Edvil.</name>
</author>
<id>https://hdl.handle.net/1721.1/163518</id>
<updated>2025-11-05T05:14:10Z</updated>
<published>1959-01-01T00:00:00Z</published>
<summary type="text">An investigation of the engineering aspects of a wind tunnel magnetic suspension system
Chrisinger, John Edvil.
Thesis: M.S., Massachusetts Institute of Technology, Department of Aeronautics and Astronautics, 1959; Includes bibliographical references (leaf 62).
</summary>
<dc:date>1959-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Extrageniculate and extrastriate affiliates of the geniculocortical pathway in the cat</title>
<link href="https://hdl.handle.net/1721.1/163517" rel="alternate"/>
<author>
<name>Berson, David Matthew.</name>
</author>
<id>https://hdl.handle.net/1721.1/163517</id>
<updated>2025-11-05T04:06:26Z</updated>
<published>1980-01-01T00:00:00Z</published>
<summary type="text">Extrageniculate and extrastriate affiliates of the geniculocortical pathway in the cat
Berson, David Matthew.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Psychology, 1980; Vita.; Bibliography: leaves 114-126.
</summary>
<dc:date>1980-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>New theoretical methods for the study of the electronic structure of solids.</title>
<link href="https://hdl.handle.net/1721.1/163516" rel="alternate"/>
<author>
<name>Mele, Eugene John.</name>
</author>
<id>https://hdl.handle.net/1721.1/163516</id>
<updated>2025-11-05T04:06:18Z</updated>
<published>1978-01-01T00:00:00Z</published>
<summary type="text">New theoretical methods for the study of the electronic structure of solids.
Mele, Eugene John.
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Physics, 1978; Includes bibliographical references.
</summary>
<dc:date>1978-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A financial history of the Boston elevated</title>
<link href="https://hdl.handle.net/1721.1/163515" rel="alternate"/>
<author>
<name>Stallman, Edward B.</name>
</author>
<author>
<name>Bush, Horace McM.</name>
</author>
<id>https://hdl.handle.net/1721.1/163515</id>
<updated>2025-11-05T05:31:53Z</updated>
<published>1926-01-01T00:00:00Z</published>
<summary type="text">A financial history of the Boston elevated
Stallman, Edward B.; Bush, Horace McM.
Thesis: B.S., Massachusetts Institute of Technology, Department of Business and Engineering Administration, 1926; Includes bibliographical references (leaf 34).
</summary>
<dc:date>1926-01-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Molecular engineering of a cryptic epitope in Spike RBD improves manufacturability and neutralizing breadth against SARS-CoV-2 variants</title>
<link href="https://hdl.handle.net/1721.1/163514" rel="alternate"/>
<author>
<name>Rodriguez-Aponte, Sergio A</name>
</author>
<author>
<name>Dalvie, Neil C</name>
</author>
<author>
<name>Wong, Ting Y</name>
</author>
<author>
<name>Johnston, Ryan S</name>
</author>
<author>
<name>Naranjo, Christopher A</name>
</author>
<author>
<name>Bajoria, Sakshi</name>
</author>
<author>
<name>Kumru, Ozan S</name>
</author>
<author>
<name>Kaur, Kawaljit</name>
</author>
<author>
<name>Russ, Brynnan P</name>
</author>
<author>
<name>Lee, Katherine S</name>
</author>
<author>
<name>Cyphert, Holly A</name>
</author>
<author>
<name>Barbier, Mariette</name>
</author>
<author>
<name>Rao, Harish D</name>
</author>
<author>
<name>Rajurkar, Meghraj P</name>
</author>
<author>
<name>Lothe, Rakesh R</name>
</author>
<author>
<name>Shaligram, Umesh S</name>
</author>
<author>
<name>Batwal, Saurabh</name>
</author>
<author>
<name>Chandrasekaran, Rahul</name>
</author>
<author>
<name>Nagar, Gaurav</name>
</author>
<author>
<name>Kleanthous, Harry</name>
</author>
<author>
<name>Biswas, Sumi</name>
</author>
<author>
<name>Bevere, Justin R</name>
</author>
<author>
<name>Joshi, Sangeeta B</name>
</author>
<author>
<name>Volkin, David B</name>
</author>
<author>
<name>Damron, F Heath</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<id>https://hdl.handle.net/1721.1/163514</id>
<updated>2025-11-04T03:07:58Z</updated>
<published>2023-01-27T00:00:00Z</published>
<summary type="text">Molecular engineering of a cryptic epitope in Spike RBD improves manufacturability and neutralizing breadth against SARS-CoV-2 variants
Rodriguez-Aponte, Sergio A; Dalvie, Neil C; Wong, Ting Y; Johnston, Ryan S; Naranjo, Christopher A; Bajoria, Sakshi; Kumru, Ozan S; Kaur, Kawaljit; Russ, Brynnan P; Lee, Katherine S; Cyphert, Holly A; Barbier, Mariette; Rao, Harish D; Rajurkar, Meghraj P; Lothe, Rakesh R; Shaligram, Umesh S; Batwal, Saurabh; Chandrasekaran, Rahul; Nagar, Gaurav; Kleanthous, Harry; Biswas, Sumi; Bevere, Justin R; Joshi, Sangeeta B; Volkin, David B; Damron, F Heath; Love, J Christopher
There is a continued need for sarbecovirus vaccines that can be manufactured and distributed in low- and middle-income countries (LMICs). Subunit protein vaccines are manufactured at large scales at low costs, have less stringent temperature requirements for distribution in LMICs, and several candidates have shown protection against SARS-CoV-2. We previously reported an engineered variant of the SARS-CoV-2 Spike protein receptor binding domain antigen (RBD-L452K-F490W; RBD-J) with enhanced manufacturability and immunogenicity compared to the ancestral RBD. Here, we report a second-generation engineered RBD antigen (RBD-J6) with two additional mutations to a hydrophobic cryptic epitope in the RBD core, S383D and L518D, that further improved expression titers and biophysical stability. RBD-J6 retained binding affinity to human convalescent sera and to all tested neutralizing antibodies except antibodies that target the class IV epitope on the RBD core. K18-hACE2 transgenic mice immunized with three doses of a Beta variant of RBD-J6 displayed on a virus-like particle (VLP) generated neutralizing antibodies (nAb) to nine SARS-CoV-2 variants of concern at similar levels as two doses of Comirnaty. The vaccinated mice were also protected from challenge with Alpha or Beta SARS-CoV-2. This engineered antigen could be useful for modular RBD-based subunit vaccines to enhance manufacturability and global access, or for further development of variant-specific or broadly acting booster vaccines.
</summary>
<dc:date>2023-01-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Immunotherapy-induced neutralizing antibodies disrupt allergen binding and sustain allergen tolerance in peanut allergy</title>
<link href="https://hdl.handle.net/1721.1/163513" rel="alternate"/>
<author>
<name>LaHood, Nicole A</name>
</author>
<author>
<name>Min, Jungki</name>
</author>
<author>
<name>Keswani, Tarun</name>
</author>
<author>
<name>Richardson, Crystal M</name>
</author>
<author>
<name>Amoako, Kwasi</name>
</author>
<author>
<name>Zhou, Jingjia</name>
</author>
<author>
<name>Marini-Rapoport, Orlee</name>
</author>
<author>
<name>Bernard, Hervé</name>
</author>
<author>
<name>Hazebrouck, Stéphane</name>
</author>
<author>
<name>Shreffler, Wayne G</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<author>
<name>Pomes, Anna</name>
</author>
<author>
<name>Pedersen, Lars C</name>
</author>
<author>
<name>Mueller, Geoffrey A</name>
</author>
<author>
<name>Patil, Sarita U</name>
</author>
<id>https://hdl.handle.net/1721.1/163513</id>
<updated>2025-11-04T03:08:00Z</updated>
<published>2023-01-17T00:00:00Z</published>
<summary type="text">Immunotherapy-induced neutralizing antibodies disrupt allergen binding and sustain allergen tolerance in peanut allergy
LaHood, Nicole A; Min, Jungki; Keswani, Tarun; Richardson, Crystal M; Amoako, Kwasi; Zhou, Jingjia; Marini-Rapoport, Orlee; Bernard, Hervé; Hazebrouck, Stéphane; Shreffler, Wayne G; Love, J Christopher; Pomes, Anna; Pedersen, Lars C; Mueller, Geoffrey A; Patil, Sarita U
In IgE-mediated food allergies, exposure to the allergen activates systemic allergic responses. Oral immunotherapy (OIT) treats food allergies through incremental increases in oral allergen exposure. However, OIT only induces sustained clinical tolerance and decreased basophil sensitivity in a subset of individuals despite increases in circulating allergen-specific IgG in all treated individuals. Therefore, we examined the allergen-specific antibodies from 2 OIT cohorts of patients with sustained and transient responses. Here, we compared antibodies from individuals with sustained or transient responses and discovered specific tolerance-associated conformational epitopes of the immunodominant allergen Ara h 2 recognized by neutralizing antibodies. First, we identified what we believe to be previously unknown conformational, intrahelical epitopes using x-ray crystallography with recombinant antibodies. We then identified epitopes only recognized in sustained tolerance. Finally, antibodies recognizing tolerance-associated epitopes effectively neutralized allergen to suppress IgE-mediated effector cell activation. Our results demonstrate the molecular basis of antibody-mediated protection in IgE-mediated food allergy, by defining how these antibodies disrupt IgE-allergen interactions to prevent allergic reactions. Our approach to studying the structural and functional basis for neutralizing antibodies demonstrates the clinical relevance of specific antibody clones in antibody-mediated tolerance. We anticipate that our findings will form the foundation for treatments of peanut allergy using neutralizing antibodies and hypoallergens.
</summary>
<dc:date>2023-01-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tissue-specific abundance of interferon-gamma drives regulatory T cells to restrain DC1-mediated priming of cytotoxic T cells against lung cancer</title>
<link href="https://hdl.handle.net/1721.1/163512" rel="alternate"/>
<author>
<name>Zagorulya, Maria</name>
</author>
<author>
<name>Yim, Leon</name>
</author>
<author>
<name>Morgan, Duncan M</name>
</author>
<author>
<name>Edwards, Austin</name>
</author>
<author>
<name>Torres-Mejia, Elen</name>
</author>
<author>
<name>Momin, Noor</name>
</author>
<author>
<name>McCreery, Chloe V</name>
</author>
<author>
<name>Zamora, Izabella L</name>
</author>
<author>
<name>Horton, Brendan L</name>
</author>
<author>
<name>Fox, James G</name>
</author>
<author>
<name>Wittrup, K Dane</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<author>
<name>Spranger, Stefani</name>
</author>
<id>https://hdl.handle.net/1721.1/163512</id>
<updated>2025-11-04T03:07:54Z</updated>
<published>2023-02-14T00:00:00Z</published>
<summary type="text">Tissue-specific abundance of interferon-gamma drives regulatory T cells to restrain DC1-mediated priming of cytotoxic T cells against lung cancer
Zagorulya, Maria; Yim, Leon; Morgan, Duncan M; Edwards, Austin; Torres-Mejia, Elen; Momin, Noor; McCreery, Chloe V; Zamora, Izabella L; Horton, Brendan L; Fox, James G; Wittrup, K Dane; Love, J Christopher; Spranger, Stefani
Local environmental factors influence CD8+ T cell priming in lymph nodes (LNs). Here, we sought to understand how factors unique to the tumor-draining mediastinal LN (mLN) impact CD8+ T cell responses toward lung cancer. Type 1 conventional dendritic cells (DC1s) showed a mLN-specific failure to induce robust cytotoxic T cells responses. Using regulatory T (Treg) cell depletion strategies, we found that Treg cells suppressed DC1s in a spatially coordinated manner within tissue-specific microniches within the mLN. Treg cell suppression required MHC II-dependent contact between DC1s and Treg cells. Elevated levels of IFN-γ drove differentiation Treg cells into Th1-like effector Treg cells in the mLN. In patients with cancer, Treg cell Th1 polarization, but not CD8+/Treg cell ratios, correlated with poor responses to checkpoint blockade immunotherapy. Thus, IFN-γ in the mLN skews Treg cells to be Th1-like effector Treg cells, driving their close interaction with DC1s and subsequent suppression of cytotoxic T cell responses.
</summary>
<dc:date>2023-02-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Minimal purification method enables developability assessment of recombinant proteins</title>
<link href="https://hdl.handle.net/1721.1/163511" rel="alternate"/>
<author>
<name>Rodriguez‐Aponte, Sergio A</name>
</author>
<author>
<name>Naranjo, Christopher A</name>
</author>
<author>
<name>Johnston, Ryan S</name>
</author>
<author>
<name>Dalvie, Neil C</name>
</author>
<author>
<name>Crowell, Laura E</name>
</author>
<author>
<name>Bajoria, Sakshi</name>
</author>
<author>
<name>Kumru, Ozan S</name>
</author>
<author>
<name>Joshi, Sangeeta B</name>
</author>
<author>
<name>Volkin, David B</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<id>https://hdl.handle.net/1721.1/163511</id>
<updated>2025-11-04T03:07:45Z</updated>
<published>2023-03-17T00:00:00Z</published>
<summary type="text">Minimal purification method enables developability assessment of recombinant proteins
Rodriguez‐Aponte, Sergio A; Naranjo, Christopher A; Johnston, Ryan S; Dalvie, Neil C; Crowell, Laura E; Bajoria, Sakshi; Kumru, Ozan S; Joshi, Sangeeta B; Volkin, David B; Love, J Christopher
Analytical characterization of proteins is a critical task for developing therapeutics and subunit vaccine candidates. Assessing candidates with a battery of biophysical assays can inform the selection of one that exhibits properties consistent with a given target product profile (TPP). Such assessments, however, require several milligrams of purified protein, and ideal assessments of the physicochemical attributes of the proteins should not include unnatural modifications like peptide tags for purification. Here, we describe a fast two‐stage minimal purification process for recombinant proteins secreted by the yeast host &lt;jats:italic&gt;Komagataella phaffii&lt;/jats:italic&gt; from a 20 mL culture supernatant. This method comprises a buffer exchange and filtration with a Q‐membrane filter and we demonstrate sufficient removal of key supernatant impurities including host‐cell proteins (HCPs) and DNA with yields of 1–2 mg and &amp;gt;60% purity. This degree of purity enables characterizing the resulting proteins using affinity binding, mass spectrometry, and differential scanning calorimetry. We first evaluated this method to purify an engineered SARS‐CoV‐2 subunit protein antigen and compared the purified protein to a conventional two‐step chromatographic process. We then applied this method to compare several SARS‐CoV‐2 RBD sequences. Finally, we show this simple process can be applied to a range of other proteins, including a single‐domain antibody, a rotavirus protein subunit, and a human growth hormone. This simple and fast developability methodology obviates the need for genetic tagging or full chromatographic development when assessing and comparing early‐stage protein therapeutics and vaccine candidates produced in &lt;jats:italic&gt;K. phaffii&lt;/jats:italic&gt;.&lt;/jats:p&gt;
</summary>
<dc:date>2023-03-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interstellar Mapping And Acceleration Probe: The NASA IMAP Mission</title>
<link href="https://hdl.handle.net/1721.1/163510" rel="alternate"/>
<author>
<name>McComas, D. J.</name>
</author>
<author>
<name>Christian, E. R.</name>
</author>
<author>
<name>Schwadron, N. A.</name>
</author>
<author>
<name>Gkioulidou, M.</name>
</author>
<author>
<name>Allegrini, F.</name>
</author>
<author>
<name>Baker, D. N.</name>
</author>
<author>
<name>Bzowski, M.</name>
</author>
<author>
<name>Clark, G.</name>
</author>
<author>
<name>Cohen, C. M. S.</name>
</author>
<author>
<name>Cohen, I.</name>
</author>
<id>https://hdl.handle.net/1721.1/163510</id>
<updated>2025-11-04T03:07:34Z</updated>
<published>2025-10-30T00:00:00Z</published>
<summary type="text">Interstellar Mapping And Acceleration Probe: The NASA IMAP Mission
McComas, D. J.; Christian, E. R.; Schwadron, N. A.; Gkioulidou, M.; Allegrini, F.; Baker, D. N.; Bzowski, M.; Clark, G.; Cohen, C. M. S.; Cohen, I.
NASA’s Interstellar Mapping and Acceleration Probe (IMAP) mission provides extensive and well-coordinated new observations of the inner and outer heliosphere and scientific closure on two of the most important topics in Heliophysics: 1) the acceleration of charged particles and 2) the interaction of the solar wind with the local interstellar medium. These topics are intimately coupled because particles accelerated in the inner heliosphere propagate outward through the solar wind and mediate its interaction with the very local interstellar medium (VLISM). The IMAP mission is designed to address these topics, provide extensive new real-time measurements critical to Space Weather observations and predictions, and much more. IMAP’s ten instruments are mounted on a simple, spinning spacecraft that orbits about the first Sun-Earth Lagrange point, L1, and repoints its Sun-facing solar arrays and spin axis toward the Sun each day. The instruments provide complete and synergistic observations that examine particle energization processes at 1 au while simultaneously probing the global heliospheric interaction with the VLISM. The 1 au in-situ observations include solar wind electrons and ions from solar wind through suprathermal energies, pickup and energetic ions, as well as the interplanetary magnetic field. IMAP provides Energetic Neutral Atom (ENA) global imaging of the outer heliosphere via ENAs from tens of eV up through hundreds of keV, as well as observations of interstellar neutral atoms traversing the heliosphere. IMAP also directly measures interstellar dust that enters the heliosphere and the solar-wind-modulated ultraviolet glow. This paper provides the mission overview for the full IMAP mission, acts as a roadmap to the other papers in this IMAP collection and provides the citable reference for the overall IMAP mission going forward.
</summary>
<dc:date>2025-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Passive Regolith Sampler: From Concept to Delivery to the Lunar Surface</title>
<link href="https://hdl.handle.net/1721.1/163509" rel="alternate"/>
<author>
<name>Stober, Keith J.</name>
</author>
<author>
<name>Dorrington, Scott</name>
</author>
<author>
<name>Rupasinghe, Dinuri</name>
</author>
<author>
<name>Mao, Claire</name>
</author>
<author>
<name>Romero, Elizabeth</name>
</author>
<author>
<name>Moswane, Rethabile</name>
</author>
<author>
<name>Zhang, Jackson</name>
</author>
<author>
<name>Mahfouth AlShehhi, Abdulla</name>
</author>
<author>
<name>Els, Sebastian G.</name>
</author>
<author>
<name>Wood, Danielle</name>
</author>
<id>https://hdl.handle.net/1721.1/163509</id>
<updated>2025-11-04T03:07:40Z</updated>
<published>2025-10-30T00:00:00Z</published>
<summary type="text">The Passive Regolith Sampler: From Concept to Delivery to the Lunar Surface
Stober, Keith J.; Dorrington, Scott; Rupasinghe, Dinuri; Mao, Claire; Romero, Elizabeth; Moswane, Rethabile; Zhang, Jackson; Mahfouth AlShehhi, Abdulla; Els, Sebastian G.; Wood, Danielle
This paper outlines the development and testing of two light-weight, low-cost, passive sensors developed by the MIT Space Enabled Research Group that were delivered to the moon in 2023 onboard the Rashid-1 rover as part of the Emirates Lunar Mission. The Passive Regolith Sampler (PRS) is a simple device mounted to the wheels of the rover, containing an aluminum tray with a cover plate of perforated holes of varying size and spacing. The device uses the motion of the rover wheel to press the device into the lunar surface, capturing small samples of lunar regolith in the holes. The Passive Wax Thermometer (PWT) is a collection of 10 wax samples, contained in individual capsules covered with sapphire windows. Each wax sample is an alkane with a different melting temperature determined by its chemical formula. Each wax sample undergoes temperature-dependent changes in opacity, providing a method for inferring temperature via image analysis. In preparation for lunar surface operations, the Space Enabled team performed a series of laboratory experiments and analytical analyses aiming to replicate conditions expected to be encountered during the mission. These experiments and analyses explored the physical mechanisms of the rover/regolith interaction, the lighting and thermal conditions at the landing site, and the quality of images captured from the rover mast camera. This paper outlines the results of these experiments and analyses, and their influence on the design and operations planning for the two payloads. Due to landing anomalies, the 2023 mission did not complete lunar surface operations; further work is planned to explore future operational opportunities.
</summary>
<dc:date>2025-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Von Neumann-Morgenstern stability and internal closedness in matching theory</title>
<link href="https://hdl.handle.net/1721.1/163508" rel="alternate"/>
<author>
<name>Faenza, Yuri</name>
</author>
<author>
<name>Stein, Cliff</name>
</author>
<author>
<name>Wan, Jia</name>
</author>
<id>https://hdl.handle.net/1721.1/163508</id>
<updated>2025-11-04T03:07:41Z</updated>
<published>2025-10-30T00:00:00Z</published>
<summary type="text">Von Neumann-Morgenstern stability and internal closedness in matching theory
Faenza, Yuri; Stein, Cliff; Wan, Jia
Gale and Shapley’s stability criterion enjoys a rich mathematical structure, which propelled its application in various settings. Although immensely popular, the approach by Gale and Shapley cannot encompass all the different features that arise in applications, motivating the search for alternative solution concepts. We investigate alternatives that rely on the concept of internal stability, a notion introduced for abstract games by von Neumann and Morgenstern and motivated by the need of finding a set of mutually compatible solutions. The set of stable matchings is internally stable. However, the class of internally stable sets is much richer, for an internally stable set of matchings may also include unstable matchings and/or exclude stable ones. In this paper, we focus on two families of internally stable sets of matchings: von Neumann-Morgenstern stable and internally closed. We study algorithmic questions around those concepts in both the marriage and the roommate models. One of our results implies that, in the marriage model, internally closed sets are an alternative to stable matchings that is as tractable as stable matchings themselves, a fairly rare occurrence in the area. Both our positive and negative results rely on new structural insights and extensions of classical algebraic structures associated with sets of matchings, which we believe to be of independent interest.
</summary>
<dc:date>2025-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Order-forcing in Neural Codes</title>
<link href="https://hdl.handle.net/1721.1/163507" rel="alternate"/>
<author>
<name>Jeffs, R. A.</name>
</author>
<author>
<name>Lienkaemper, Caitlin</name>
</author>
<author>
<name>Youngs, Nora</name>
</author>
<id>https://hdl.handle.net/1721.1/163507</id>
<updated>2025-11-04T03:07:38Z</updated>
<published>2025-10-28T00:00:00Z</published>
<summary type="text">Order-forcing in Neural Codes
Jeffs, R. A.; Lienkaemper, Caitlin; Youngs, Nora
Convex neural codes are subsets of the Boolean lattice that record the intersection patterns of convex sets in Euclidean space. Much work in recent years has focused on finding combinatorial criteria on codes that can be used to classify whether or not a code is convex. In this paper we introduce order-forcing, a combinatorial tool which recognizes when certain regions in a realization of a code must appear along a line segment between other regions. We use order-forcing to construct novel examples of non-convex codes, and to expand existing families of examples. We also construct a family of codes which shows that a dimension bound of Cruz, Giusti, Itskov, and Kronholm (referred to as monotonicity of open convexity) is tight in all dimensions.
</summary>
<dc:date>2025-10-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Co-evolution of alpha-helical transmembrane protein residues: large-scale variant profiling and complete mutational landscape of 2277 known PDB entries representing 504 unique human protein sequences</title>
<link href="https://hdl.handle.net/1721.1/163506" rel="alternate"/>
<author>
<name>Karagöl, Taner</name>
</author>
<author>
<name>Karagöl, Alper</name>
</author>
<author>
<name>Zhang, Shuguang</name>
</author>
<id>https://hdl.handle.net/1721.1/163506</id>
<updated>2025-11-04T03:07:31Z</updated>
<published>2025-09-24T00:00:00Z</published>
<summary type="text">Co-evolution of alpha-helical transmembrane protein residues: large-scale variant profiling and complete mutational landscape of 2277 known PDB entries representing 504 unique human protein sequences
Karagöl, Taner; Karagöl, Alper; Zhang, Shuguang
Membrane proteins play fundamental roles in cellular function, yet the evolutionary dynamics of their amino acid composition remain poorly understood. Our current study investigates the substitutional landscape and evolutionary patterns of hydrophilic and hydrophobic residues in membrane α-helical proteins, addressing a significant gap in our knowledge of protein evolution. We analyzed 2277 high-resolution protein structures from the RCSB Protein Data Bank corresponding to 458 unique PDB structures, 504 UniProt transmembrane entries and their AlphaMissense predicted mutational libraries including more than 5.8 million amino acid substitutions, focusing on known transmembrane α-helical proteins in Homo sapiens. Our analysis showed that the pathological outcome of the substitutions is diverse, as nonpolar to polar changes showed higher pathological scores in general. Notably, F &lt;=&gt; Y substitutions showed significantly lower pathological scores. Our further analysis revealed a significant asymmetry in the evolutionary frequencies of polar and nonpolar amino acids. We identified key residue pairs driving this asymmetry, with F &lt;=&gt; Y, A &lt;=&gt; T, V &lt;=&gt; T and A &lt;=&gt; S co-evolution diverging from the expected negative correlations (Spearman’s rho &gt; 0.20, p &lt; 0.001). The V &lt;=&gt; T substitution via an alanine intermediate and the G &lt;=&gt; N substitution via a serine intermediate lower their statistical barrier, which would otherwise require two sequential base changes. We propose two evolutionary game theory (EGT) based models to explain their diversification, with partial correlation analysis on residue frequencies in homolog sequences. These mathematical insights suggest a previously unrecognized evolutionary pressure, potentially linked to functional diversification, which could be targeted to combat drug resistance. Our results offer insights into membrane protein evolution and may inform improved methods for protein structure prediction and design.
</summary>
<dc:date>2025-09-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Perforation of the host cell plasma membrane during Toxoplasma invasion requires rhoptry exocytosis</title>
<link href="https://hdl.handle.net/1721.1/163505" rel="alternate"/>
<author>
<name>Male, Frances</name>
</author>
<author>
<name>Kegawa, Yuto</name>
</author>
<author>
<name>Blank, Paul S.</name>
</author>
<author>
<name>Jiménez-Munguía, Irene</name>
</author>
<author>
<name>Sidik, Saima M.</name>
</author>
<author>
<name>Valleau, Dylan</name>
</author>
<author>
<name>Lourido, Sebastian</name>
</author>
<author>
<name>Lebrun, Maryse</name>
</author>
<author>
<name>Zimmerberg, Joshua</name>
</author>
<author>
<name>Ward, Gary E.</name>
</author>
<id>https://hdl.handle.net/1721.1/163505</id>
<updated>2025-11-04T03:07:28Z</updated>
<published>2025-09-19T00:00:00Z</published>
<summary type="text">Perforation of the host cell plasma membrane during Toxoplasma invasion requires rhoptry exocytosis
Male, Frances; Kegawa, Yuto; Blank, Paul S.; Jiménez-Munguía, Irene; Sidik, Saima M.; Valleau, Dylan; Lourido, Sebastian; Lebrun, Maryse; Zimmerberg, Joshua; Ward, Gary E.
Toxoplasma gondii is an obligate intracellular parasite. Proteins released during host cell invasion from apical secretory organelles known as rhoptries are delivered into the host cell cytosol to perform functions critical for parasite survival and virulence. How these effector proteins move across the host cell plasma membrane is unknown but may involve a previously noted temporary loss of host cell plasma membrane barrier integrity. Here, we use high-speed, multi-wavelength fluorescence imaging to spatially monitor the barrier integrity of the host cell plasma membrane, in real time, during invasion. The data reveal that early in invasion the parasite creates a transient perforation in the host cell membrane. The perforation occurs at the point on the host membrane in contact with the parasite’s apical end. Parasites depleted of any of five proteins known to be required for rhoptry exocytosis are unable to perforate the host cell membrane. These data suggest a model in which perforating agents stored within rhoptries are released onto the host cell at the initiation of invasion to create a conduit for the delivery of rhoptry effector proteins.
</summary>
<dc:date>2025-09-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Unknottedness of free boundary minimal surfaces and self-shrinkers</title>
<link href="https://hdl.handle.net/1721.1/163504" rel="alternate"/>
<author>
<name>Chu, Sabine</name>
</author>
<author>
<name>Franz, Giada</name>
</author>
<id>https://hdl.handle.net/1721.1/163504</id>
<updated>2025-11-04T03:07:21Z</updated>
<published>2025-09-08T00:00:00Z</published>
<summary type="text">Unknottedness of free boundary minimal surfaces and self-shrinkers
Chu, Sabine; Franz, Giada
We study unknottedness for free boundary minimal surfaces in a three-dimensional Riemannian manifold with nonnegative Ricci curvature and strictly convex boundary, and for self-shrinkers in the three-dimensional Euclidean space. For doing so, we introduce the concepts of boundary graph for free boundary minimal surfaces and of graph at infinity for self-shrinkers. We prove that these surfaces are unknotted in the sense that any two such surfaces with isomorphic boundary graph or graph at infinity are smoothly isotopic.
</summary>
<dc:date>2025-09-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>The wavefront set: bounds for the Langlands parameter</title>
<link href="https://hdl.handle.net/1721.1/163503" rel="alternate"/>
<author>
<name>Ciubotaru, Dan</name>
</author>
<author>
<name>Kim, Ju-Lee</name>
</author>
<id>https://hdl.handle.net/1721.1/163503</id>
<updated>2025-11-04T03:07:12Z</updated>
<published>2025-09-09T00:00:00Z</published>
<summary type="text">The wavefront set: bounds for the Langlands parameter
Ciubotaru, Dan; Kim, Ju-Lee
For an irreducible smooth representation of a connected reductive p-adic group, two important associated invariants are the wavefront set and the (partly conjectural) Langlands parameter. While a wavefront set consists of p-adic nilpotent orbits, one constituent of the Langlands parameter is a complex nilpotent orbit in the dual Lie algebra. For unipotent representations in the sense of Lusztig, the corresponding nilpotent orbits on the two sides are related via the Lusztig–Spaltenstein duality (Ciubotaru et al. in Am J Math arXiv:2112.14354v4 , J Reine Angew Math (Crelles J) 823:191–253, 2025). In this paper, we formulate a general upper-bound conjecture and several variants relating the nilpotent orbits that appear in the wavefront set and in the Langlands parameter. We also verify these expectations in some cases, including the depth-zero supercuspidal representations of classical groups and all the irreducible representations of G2.
</summary>
<dc:date>2025-09-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>An open-source and low-cost dual-extruder 3D printer for macroscale biotic materials</title>
<link href="https://hdl.handle.net/1721.1/163502" rel="alternate"/>
<author>
<name>de Alva, Jesse P.</name>
</author>
<author>
<name>Buehler, Markus</name>
</author>
<id>https://hdl.handle.net/1721.1/163502</id>
<updated>2025-11-04T03:07:27Z</updated>
<published>2025-10-22T00:00:00Z</published>
<summary type="text">An open-source and low-cost dual-extruder 3D printer for macroscale biotic materials
de Alva, Jesse P.; Buehler, Markus
This work presents the design and fabrication of a novel, dual-extruder biotic 3D printer, tailored for precise deposition of natural biomaterials such as pectin, chitosan, and cellulose. Moving beyond the limitations of traditional thermoplastic extrusion which relies on non-renewable plastics and produces significant waste, this printer utilizes a syringe-based mechanical extruder to deposit viscous biotic material hydrogels. The integration of a dual-extruder system enables the creation of multi-material prints, offering new possibilities for sustainable and biotic manufacturing. Designed with accessibility and versatility in mind, the system features user-friendly operation suitable for non-experts with open-source hardware and software. By providing a robust, customizable, and open-source platform, this work aims to empower researchers, educators, and innovators to advance biomaterials research and expand the reach of sustainable additive manufacturing. The printer fosters a collaborative community and lays the groundwork for further exploration of biological designs and materials.
</summary>
<dc:date>2025-10-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Observation of the doubly-charmed-baryon decay Ξ cc + + → Ξ c 0 π + π +</title>
<link href="https://hdl.handle.net/1721.1/163501" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<author>
<name>The LHCb Collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163501</id>
<updated>2025-11-04T03:07:25Z</updated>
<published>2025-10-16T00:00:00Z</published>
<summary type="text">Observation of the doubly-charmed-baryon decay Ξ cc + + → Ξ c 0 π + π +
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.; The LHCb Collaboration
A search for the doubly-charmed-baryon decay Ξ cc + + → Ξ c 0 π + π + is performed using proton-proton collision data collected by the LHCb experiment at a centre-of-mass energy of 13 TeV and corresponding to an integrated luminosity of 5.4 fb−1. A significant structure consistent with the Ξ cc + + baryon is observed in the Ξ c 0 π + π + invariant-mass spectrum. Using the Ξ cc + + → Λ c + K − π + π + decay as the normalisation channel, the branching fraction ratio, B Ξ cc + + → Ξ c 0 π + π + B Ξ cc + + → Λ c + K − π + π + , is measured to be 1.37 ± 0.18 (stat) ± 0.09 (syst) ± 0.35 (ext). This measurement provides critical input for testing QCD factorisation methods in the weak decays of doubly-heavy baryons, particularly in quantifying nonperturbative effects such as final-state interactions and resonance contributions to the hadronisation process.
</summary>
<dc:date>2025-10-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Experimental evidence for nodal superconducting gap in moiré graphene</title>
<link href="https://hdl.handle.net/1721.1/163500" rel="alternate"/>
<author>
<name>Park, Jeong Min</name>
</author>
<author>
<name>Sun, Shuwen</name>
</author>
<author>
<name>Watanabe, Kenji</name>
</author>
<author>
<name>Taniguchi, Takashi</name>
</author>
<author>
<name>Jarillo-Herrero, Pablo</name>
</author>
<id>https://hdl.handle.net/1721.1/163500</id>
<updated>2025-11-06T21:55:26Z</updated>
<published>2025-11-06T00:00:00Z</published>
<summary type="text">Experimental evidence for nodal superconducting gap in moiré graphene
Park, Jeong Min; Sun, Shuwen; Watanabe, Kenji; Taniguchi, Takashi; Jarillo-Herrero, Pablo
Understanding the nature of superconductivity in magic-angle graphene remains&#13;
challenging. A key difficulty lies in discerning the different energy scales in this strongly&#13;
interacting system, particularly the superconducting gap. Here, we report simultaneous tunneling&#13;
spectroscopy and transport measurements of magic-angle twisted trilayer graphene. This approach&#13;
allows us to identify two coexisting V-shaped tunneling gaps with different energy scales: a&#13;
distinct low-energy superconducting gap that vanishes at the superconducting critical temperature&#13;
and magnetic field, and a higher-energy pseudogap. The superconducting tunneling spectra display&#13;
a linear gap-filling behavior with temperature and magnetic field and exhibit the Volovik effect,&#13;
consistent with a nodal order parameter. Our work suggests an unconventional nature of the&#13;
superconducting gap and establishes an experimental framework for multidimensional&#13;
investigation of tunable quantum materials.
</summary>
<dc:date>2025-11-06T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mitigating matrix effects in oil and gas wastewater analysis: LC-MS/MS method for ethanolamines</title>
<link href="https://hdl.handle.net/1721.1/163499" rel="alternate"/>
<author>
<name>de Vera, Glen Andrew D</name>
</author>
<author>
<name>Caldiero, Loredana</name>
</author>
<author>
<name>Conte, Giovanni</name>
</author>
<author>
<name>Plata, Desirée L</name>
</author>
<id>https://hdl.handle.net/1721.1/163499</id>
<updated>2025-11-04T03:07:56Z</updated>
<published>2024-12-26T00:00:00Z</published>
<summary type="text">Mitigating matrix effects in oil and gas wastewater analysis: LC-MS/MS method for ethanolamines
de Vera, Glen Andrew D; Caldiero, Loredana; Conte, Giovanni; Plata, Desirée L
The high salinity and organic content in oil and gas wastewaters can cause ion suppression during liquid chromatography mass spectrometry (LC/MS) analysis, diminishing the sensitivity and accuracy of measurements in available methods. This suppression is severe for low molecular weight organic compounds such as ethanolamines (e.g., monoethanolamine (MEA), diethanolamine (DEA), triethanolamine (TEA), N-methyldiethanolamine (MDEA), and N,N-ethyldiethanolamine (EDEA)). Here, we deployed solid phase extraction (SPE), mixed-mode LC, triple quadrupole MS with positive electrospray ionization (ESI), and a suite of stable isotope standards (i.e., one per target compound) to correct for ion suppression by salts and organic matter, SPE losses, and instrument variability. The method was evaluated in produced water samples from Italy (NaCl salinity from 8110–18 100 mg L−1; diesel range organic compounds ranging from 5.1–7.9 mg L−1). After correcting for matrix effects, ethanolamines in produced water samples were quantified. The first batch of samples (March 2019) had 37–646 μg L−1 total ethanolamines. The second batch of samples (September 2019) had greater ethanolamine content of 77–3976 μg L−1 which was attributed to a reduced water cut during oil production, enhancing the proportionate abundance of these compounds in the aqueous phase. In all samples, DEA and MEA were the dominant ethanolamine species. Possible sources (e.g., corrosion inhibitor and biotransformation) and natural attenuation potential during storage (e.g., at different temperatures, acidification, and addition of sodium azide) were investigated. The developed analytical method enables further investigation of the fate of low molecular weight organic additives in oil and gas development and provides an enhanced ability to evaluate risks associated with chemical release to the environment.
</summary>
<dc:date>2024-12-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Sensitivity analysis of aromatic chemistry to gas-phase kinetics in a dark molecular cloud model</title>
<link href="https://hdl.handle.net/1721.1/163498" rel="alternate"/>
<author>
<name>Byrne, Alex N</name>
</author>
<author>
<name>Xue, Ci</name>
</author>
<author>
<name>Van Voorhis, Troy</name>
</author>
<author>
<name>McGuire, Brett A</name>
</author>
<id>https://hdl.handle.net/1721.1/163498</id>
<updated>2025-11-04T03:07:57Z</updated>
<published>2024-10-21T00:00:00Z</published>
<summary type="text">Sensitivity analysis of aromatic chemistry to gas-phase kinetics in a dark molecular cloud model
Byrne, Alex N; Xue, Ci; Van Voorhis, Troy; McGuire, Brett A
The increasingly large number of complex organic molecules detected in the interstellar medium necessitates robust kinetic models that can be relied upon for investigating the involved chemical processes. Such models require rate coefficients for each of the thousands of reactions; the values of these are often estimated or extrapolated, leading to large uncertainties that are rarely quantified. We have performed a global Monte Carlo and a more local one-at-a-time sensitivity analysis on the gas-phase rate coefficients in a 3-phase dark cloud model. Time-dependent sensitivities have been calculated using four metrics to determine key reactions for the overall network as well as for the cyanonaphthalene molecule in particular, an important interstellar species that is severely under-produced by current models. All four metrics find that reactions involving small, reactive species that initiate hydrocarbon growth have large effects on the overall network. Cyanonaphthalene is most sensitive to a number of these reactions as well as ring-formation of the phenyl cation (C6H5+) and aromatic growth from benzene to naphthalene. Future efforts should prioritize constraining rate coefficients of key reactions and expanding the network surrounding these processes. These results highlight the strength of sensitivity analysis techniques to identify critical processes in complex chemical networks, such as those often used in astrochemical modeling.
</summary>
<dc:date>2024-10-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Automated electrochemical oxygen sensing using a 3D-printed microfluidic lab-on-a-chip system</title>
<link href="https://hdl.handle.net/1721.1/163497" rel="alternate"/>
<author>
<name>Kaufman, Daniel</name>
</author>
<author>
<name>Winkler, Steffen</name>
</author>
<author>
<name>Heuer, Christopher</name>
</author>
<author>
<name>Shibli, Ahed</name>
</author>
<author>
<name>Snezhko, Alexander</name>
</author>
<author>
<name>Livshits, Gideon I</name>
</author>
<author>
<name>Bahnemann, Janina</name>
</author>
<author>
<name>Ben-Yoav, Hadar</name>
</author>
<id>https://hdl.handle.net/1721.1/163497</id>
<updated>2025-11-04T03:07:51Z</updated>
<published>2024-12-28T00:00:00Z</published>
<summary type="text">Automated electrochemical oxygen sensing using a 3D-printed microfluidic lab-on-a-chip system
Kaufman, Daniel; Winkler, Steffen; Heuer, Christopher; Shibli, Ahed; Snezhko, Alexander; Livshits, Gideon I; Bahnemann, Janina; Ben-Yoav, Hadar
Dissolved oxygen is crucial for metabolism, growth, and other complex physiological and pathological processes; however, standard physiological models (such as organ-on-chip systems) often use ambient oxygen levels, which do not reflect the lower levels that are typically found in vivo. Additionally, the local generation of reactive oxygen species (ROS; a key factor in physiological systems) is often overlooked in biology-mimicking models. Here, we present a microfluidic system that integrates electrochemical dissolved oxygen sensors with lab-on-a-chip technology to monitor the physiological oxygen concentrations and generate hydrogen peroxide (H2O2; a specific ROS). This microfluidic lab-on-a-chip system was fabricated using high-resolution 3D printing technology in a one-step process. It incorporates a micromixer, an on-chip bubble-trap, an electrochemical cell with fabricated gold or platinum black-coated working electrodes as well as an Ag/AgCl reference electrode, and a commercial optical oxygen sensor for validation. This device enables an automated variation of the oxygen levels as well as sensitive electrochemical oxygen monitoring (limit of detection = 11.9 ± 0.3 μM), with a statistically significant correlation with the optical sensor. The proposed system can serve as a tool to characterize and evaluate custom-made electrodes. Indeed, we envision that in the future it will be used to regulate dissolved oxygen levels and oxygen species in real time in organ-on-chip systems.
</summary>
<dc:date>2024-12-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>A critical review on Li-ion transport, chemistry and structure of ceramic–polymer composite electrolytes for solid state batteries</title>
<link href="https://hdl.handle.net/1721.1/163496" rel="alternate"/>
<author>
<name>Sand, Sara Catherine</name>
</author>
<author>
<name>Rupp, Jennifer LM</name>
</author>
<author>
<name>Yildiz, Bilge</name>
</author>
<id>https://hdl.handle.net/1721.1/163496</id>
<updated>2025-11-04T03:07:53Z</updated>
<published>2024-11-18T00:00:00Z</published>
<summary type="text">A critical review on Li-ion transport, chemistry and structure of ceramic–polymer composite electrolytes for solid state batteries
Sand, Sara Catherine; Rupp, Jennifer LM; Yildiz, Bilge
In the transition to safer, more energy-dense solid state batteries, polymer–ceramic composite electrolytes may offer a potential route to achieve simultaneously high Li-ion conductivity and enhanced mechanical stability. Despite numerous studies on the polymer–ceramic composite electrolytes, disagreements persist on whether the polymer or the ceramic is positively impacted in their constituent ionic conductivity for such composite electrolytes, and even whether the interface is a blocking layer or a highly conductive lithium ion path. This lack of understanding limits the design of effective composite solid electrolytes. By thorough and critical analysis of the data collected in the field over the last three decades, we present arguments for lithium conduction through the bulk of the polymer, ceramic, or their interface. From this analysis, we can conclude that the unexpectedly high conductivity reported for some ceramic–polymer composites cannot be accounted for by the ceramic phase alone. There is evidence to support the theory that the Li-ion conductivity in the polymer phase increases along this interface in contact with the ceramic. The potential mechanisms for this include increased free volume, decreased crystallinity, and modulated Lewis acid–base effects in the polymer, with the former two to be the more likely mechanisms. Future work in this field requires understanding these factors more quantitatively, and tuning of the ceramic surface chemistry and morphology in order to obtain targeted structural modifications in the polymer phase.
</summary>
<dc:date>2024-11-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Na vs. Li metal anodes for batteries: unraveling thermodynamic and electronic origins of voids and developing descriptors for artificial surface coatings</title>
<link href="https://hdl.handle.net/1721.1/163495" rel="alternate"/>
<author>
<name>Venturi, Victor</name>
</author>
<author>
<name>Freitas, Rodrigo</name>
</author>
<author>
<name>Abate, Iwnetim Iwnetu</name>
</author>
<id>https://hdl.handle.net/1721.1/163495</id>
<updated>2025-11-04T03:07:49Z</updated>
<published>2024-09-24T00:00:00Z</published>
<summary type="text">Na vs. Li metal anodes for batteries: unraveling thermodynamic and electronic origins of voids and developing descriptors for artificial surface coatings
Venturi, Victor; Freitas, Rodrigo; Abate, Iwnetim Iwnetu
Techno-economic, humanitarian, and safety concerns limit the possible uses of conventional lithium-ion and lithium-metal batteries. Sodium-based batteries constitute a promising alternative to address these issues; however, due to the similarities between the two alkali metals, they present similar failure modes as their lithium counterparts. In this work, we focus on one of such failure mechanisms: the thermodynamically-driven accumulation of vacancies on the surface of the metallic anode, which leads to the formation of voids and pits, detrimental to battery performance and cycle life. We investigate the differences in behavior between anode/coating interfaces of both lithium and sodium. Adhesion energy, a descriptor previously argued to be a reliable design principle for lithium metal anodes, is found to not exhibit the same predictive power for sodium metal architectures: in cases where vacancy congregation is not thermodynamically favorable for isolated sodium slabs, we find strong interfacial interactions to have adverse effects on void formation. By studying select coating materials, we also reveal that these material interactions at alkali/coating interfaces are highly nuanced, and that the field of surface science and engineering is ripe with opportunities for further discovery and tuning of surface properties via coating selection.
</summary>
<dc:date>2024-09-24T00:00:00Z</dc:date>
</entry>
<entry>
<title>Interface‐Induced Stability of Nontrivial Topological Spin Textures: Unveiling Room‐Temperature Hopfions and Skyrmions</title>
<link href="https://hdl.handle.net/1721.1/163494" rel="alternate"/>
<author>
<name>Katmis, Ferhat</name>
</author>
<author>
<name>Lauter, Valeria</name>
</author>
<author>
<name>Yagan, Rawana</name>
</author>
<author>
<name>Brandt, Iuri S</name>
</author>
<author>
<name>Cheghabouri, Arash M</name>
</author>
<author>
<name>Zhou, Hua</name>
</author>
<author>
<name>Freeland, John W</name>
</author>
<author>
<name>de Araujo, Clodoaldo IL</name>
</author>
<author>
<name>Jamer, Michelle E</name>
</author>
<author>
<name>Heiman, Don</name>
</author>
<author>
<name>Onbasli, Mehmet C</name>
</author>
<author>
<name>Moodera, Jagadeesh S</name>
</author>
<id>https://hdl.handle.net/1721.1/163494</id>
<updated>2025-11-04T03:07:47Z</updated>
<published>2025-08-18T00:00:00Z</published>
<summary type="text">Interface‐Induced Stability of Nontrivial Topological Spin Textures: Unveiling Room‐Temperature Hopfions and Skyrmions
Katmis, Ferhat; Lauter, Valeria; Yagan, Rawana; Brandt, Iuri S; Cheghabouri, Arash M; Zhou, Hua; Freeland, John W; de Araujo, Clodoaldo IL; Jamer, Michelle E; Heiman, Don; Onbasli, Mehmet C; Moodera, Jagadeesh S
Topological spin configurations, such as soliton-like spin texture and Dirac electron assemblies, have recently emerged in fundamental science and technology. Achieving stable topological spin textures at room temperature is crucial for their use as long-range information carriers. However, their creation and manipulation are hindered by multi-step field training and competing interactions. Thus, a spontaneous ground state for multidimensional topological spin textures is desirable, with skyrmions forming swirling, hedgehog-like spin structures in two dimensions and hopfions as their twisted 3D counterparts. Here, the first observation of robust and reproducible topological spin textures of hopfions and skyrmions observed at room temperature and in zero magnetic field is reported, which are stabilized by geometric confinement and protected by interfacial magnetism in a ferromagnet/topological insulator/ferromagnet trilayer heterostructure. These skyrmion-hopfion configurations are directly observed at room temperature with Lorenz transmission electron microscopy. Using micromagnetic modeling, the experimental observations of hopfion-skyrmion assemblies are reproduced. This model reveals a complete picture of how spontaneously organized skyrmion lattices encircled by hopfion rings are controlled by surface electrons, uniaxial anisotropy, and Dzyaloshinskii-Moriya interaction. This study provides evidence that topological chiral spin textures can facilitate the development of magnetic topological carriers, paving the way for ultralow-power and high-density information processing.
</summary>
<dc:date>2025-08-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Genetic Surfaceome E. coli Reprogramming Enables Selective Water Oxidation</title>
<link href="https://hdl.handle.net/1721.1/163493" rel="alternate"/>
<author>
<name>Sedenho, Graziela C</name>
</author>
<author>
<name>Pacheco, Jéssica C</name>
</author>
<author>
<name>Gut, Melanie</name>
</author>
<author>
<name>Lima, Filipe CDA</name>
</author>
<author>
<name>Dey, Sunanda</name>
</author>
<author>
<name>Crespilho, Frank N</name>
</author>
<author>
<name>Furst, Ariel L</name>
</author>
<id>https://hdl.handle.net/1721.1/163493</id>
<updated>2025-11-04T03:07:36Z</updated>
<published>2025-08-15T00:00:00Z</published>
<summary type="text">Genetic Surfaceome E. coli Reprogramming Enables Selective Water Oxidation
Sedenho, Graziela C; Pacheco, Jéssica C; Gut, Melanie; Lima, Filipe CDA; Dey, Sunanda; Crespilho, Frank N; Furst, Ariel L
Programming catalytic behavior at the microbial genome level is a frontier in synthetic biology with direct impact on bioelectrocatalysis. A key challenge is the coordinated control of gene expression, localization, folding, and cofactor maturation required to achieve proper bioelectrocatalytic activity. Here, a synthetic operon in Escherichia coli is engineered to reprogram its surfaceome for selective water oxidation. Using orthogonal IPTG-inducible control and codon-optimized expression, a fungal bilirubin oxidase (BOD) displayed at the cell surface is produced by ice nucleation protein anchoring (BOD-E. coli). Post-overexpression copper catalytic site reconstitution provides an active holoenzyme. The developed engineered living material performs water oxidation at near-zero overpotential (27 mV at pH 9.1), with complete suppression of the oxygen reduction reaction. These results show how regenerable microbial platforms can be designed for selective catalysis and artificial photosynthesis.
</summary>
<dc:date>2025-08-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Surprises From the Basal Ganglia: Stop and Go Have New Meaning</title>
<link href="https://hdl.handle.net/1721.1/163492" rel="alternate"/>
<author>
<name>Graybiel, Ann M</name>
</author>
<id>https://hdl.handle.net/1721.1/163492</id>
<updated>2025-11-04T03:07:44Z</updated>
<published>2025-08-14T00:00:00Z</published>
<summary type="text">Surprises From the Basal Ganglia: Stop and Go Have New Meaning
Graybiel, Ann M
This perspective highlights new worksuggesting the need for revision of the canonical direct–indirect model of the basal ganglia’s inﬂuence on move-ment, with fresh evidence that there is a formerlyunappreciated pair of direct and indirect pathways thatparallel the standard model’s canonical direct and indi-rect pathways, and promising evidence pointing towardimproved clinical treatments for Parkinson’s disease. Asa working hypothesis, it is suggested that the non-canonical direct and indirect pathways, which arise instriosomes, might act as homeostatic circuits that canreign in or amplify the activity of the canonical pathwaysin the face of their imbalance, including that occurring inhyperkinetic or hypokinetic disorders.
</summary>
<dc:date>2025-08-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Simulating the Potential for Invasive Grass Expansion to Alter Wildfire Behavior in Southern California With WRF‐Fire</title>
<link href="https://hdl.handle.net/1721.1/163491" rel="alternate"/>
<author>
<name>Wang, Bowen</name>
</author>
<author>
<name>Madakumbura, Gavin D</name>
</author>
<author>
<name>Juliano, Timothy W</name>
</author>
<author>
<name>Williams, A Park</name>
</author>
<id>https://hdl.handle.net/1721.1/163491</id>
<updated>2025-11-04T03:07:43Z</updated>
<published>2025-08-13T00:00:00Z</published>
<summary type="text">Simulating the Potential for Invasive Grass Expansion to Alter Wildfire Behavior in Southern California With WRF‐Fire
Wang, Bowen; Madakumbura, Gavin D; Juliano, Timothy W; Williams, A Park
Invasion by non‐native annual grasses poses a serious threat to native vegetation in California,facilitated through interaction with wildfires. Our work is the first attempt to use the coupled fire‐atmospheremodel, WRF‐Fire, to investigate how shifts from native, shrub‐dominated vegetation to invasive grasses couldhave affected a known wildfire event in southern California. We simulate the Mountain Fire, which burned&gt;11,000 ha in July 2013, under idealized fuel conditions representing varying extents of grass invasion.Expanding grass to double its observed coverage causes fire to spread faster due to the lower fuel load in grassesand increased wind speed. Beyond this, further grass expansion reduces the simulated spread rate because lowerheat release partially offsets the positive effects. Our simulations suggest that grass expansion may generallypromote larger faster‐spreading wildfires in southern California, motivating continued efforts to contain andreduce the spread of invasive annual grasses in this region.
</summary>
<dc:date>2025-08-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Vaccine-boosted CAR T crosstalk with host immunity to reject tumors with antigen heterogeneity</title>
<link href="https://hdl.handle.net/1721.1/163490" rel="alternate"/>
<author>
<name>Ma, Leyuan</name>
</author>
<author>
<name>Hostetler, Alexander</name>
</author>
<author>
<name>Morgan, Duncan M</name>
</author>
<author>
<name>Maiorino, Laura</name>
</author>
<author>
<name>Sulkaj, Ina</name>
</author>
<author>
<name>Whittaker, Charles A</name>
</author>
<author>
<name>Neeser, Alexandra</name>
</author>
<author>
<name>Pires, Ivan Susin</name>
</author>
<author>
<name>Yousefpour, Parisa</name>
</author>
<author>
<name>Gregory, Justin</name>
</author>
<author>
<name>Qureshi, Kashif</name>
</author>
<author>
<name>Dye, Jonathan</name>
</author>
<author>
<name>Abraham, Wuhbet</name>
</author>
<author>
<name>Suh, Heikyung</name>
</author>
<author>
<name>Li, Na</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<author>
<name>Irvine, Darrell J</name>
</author>
<id>https://hdl.handle.net/1721.1/163490</id>
<updated>2026-04-14T03:27:09Z</updated>
<published>2023-07-20T00:00:00Z</published>
<summary type="text">Vaccine-boosted CAR T crosstalk with host immunity to reject tumors with antigen heterogeneity
Ma, Leyuan; Hostetler, Alexander; Morgan, Duncan M; Maiorino, Laura; Sulkaj, Ina; Whittaker, Charles A; Neeser, Alexandra; Pires, Ivan Susin; Yousefpour, Parisa; Gregory, Justin; Qureshi, Kashif; Dye, Jonathan; Abraham, Wuhbet; Suh, Heikyung; Li, Na; Love, J Christopher; Irvine, Darrell J
Chimeric antigen receptor (CAR) T cell therapy effectively treats human cancer, but the loss of the antigen recognized by the CAR poses a major obstacle. We found that in vivo vaccine boosting of CAR T cells triggers the engagement of the endogenous immune system to circumvent antigen-negative tumor escape. Vaccine-boosted CAR T promoted dendritic cell (DC) recruitment to tumors, increased tumor antigen uptake by DCs, and elicited the priming of endogenous anti-tumor T cells. This process was accompanied by shifts in CAR T metabolism toward oxidative phosphorylation (OXPHOS) and was critically dependent on CAR-T-derived IFN-γ. Antigen spreading (AS) induced by vaccine-boosted CAR T enabled a proportion of complete responses even when the initial tumor was 50% CAR antigen negative, and heterogeneous tumor control was further enhanced by the genetic amplification of CAR T IFN-γ expression. Thus, CAR-T-cell-derived IFN-γ plays a critical role in promoting AS, and vaccine boosting provides a clinically translatable strategy to drive such responses against solid tumors.
</summary>
<dc:date>2023-07-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Early cellular and molecular signatures correlate with severity of West Nile virus infection</title>
<link href="https://hdl.handle.net/1721.1/163489" rel="alternate"/>
<author>
<name>Lee, Ho-Joon</name>
</author>
<author>
<name>Zhao, Yujiao</name>
</author>
<author>
<name>Fleming, Ira</name>
</author>
<author>
<name>Mehta, Sameet</name>
</author>
<author>
<name>Wang, Xiaomei</name>
</author>
<author>
<name>Wyk, Brent Vander</name>
</author>
<author>
<name>Ronca, Shannon E</name>
</author>
<author>
<name>Kang, Heather</name>
</author>
<author>
<name>Chou, Chih-Hung</name>
</author>
<author>
<name>Fatou, Benoit</name>
</author>
<author>
<name>Smolen, Kinga K</name>
</author>
<author>
<name>Levy, Ofer</name>
</author>
<author>
<name>Clish, Clary B</name>
</author>
<author>
<name>Xavier, Ramnik J</name>
</author>
<author>
<name>Steen, Hanno</name>
</author>
<author>
<name>Hafler, David A</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<author>
<name>Shalek, Alex K</name>
</author>
<author>
<name>Guan, Leying</name>
</author>
<author>
<name>Murray, Kristy O</name>
</author>
<author>
<name>Kleinstein, Steven H</name>
</author>
<author>
<name>Montgomery, Ruth R</name>
</author>
<id>https://hdl.handle.net/1721.1/163489</id>
<updated>2026-04-14T03:27:07Z</updated>
<published>2023-12-15T00:00:00Z</published>
<summary type="text">Early cellular and molecular signatures correlate with severity of West Nile virus infection
Lee, Ho-Joon; Zhao, Yujiao; Fleming, Ira; Mehta, Sameet; Wang, Xiaomei; Wyk, Brent Vander; Ronca, Shannon E; Kang, Heather; Chou, Chih-Hung; Fatou, Benoit; Smolen, Kinga K; Levy, Ofer; Clish, Clary B; Xavier, Ramnik J; Steen, Hanno; Hafler, David A; Love, J Christopher; Shalek, Alex K; Guan, Leying; Murray, Kristy O; Kleinstein, Steven H; Montgomery, Ruth R
Infection with West Nile virus (WNV) drives a wide range of responses, from asymptomatic to flu-like symptoms/fever or severe cases of encephalitis and death. To identify cellular and molecular signatures distinguishing WNV severity, we employed systems profiling of peripheral blood from asymptomatic and severely ill individuals infected with WNV. We interrogated immune responses longitudinally from acute infection through convalescence employing single-cell protein and transcriptional profiling complemented with matched serum proteomics and metabolomics as well as multi-omics analysis. At the acute time point, we detected both elevation of pro-inflammatory markers in innate immune cell types and reduction of regulatory T cell activity in participants with severe infection, whereas asymptomatic donors had higher expression of genes associated with anti-inflammatory CD16&lt;sup&gt;+&lt;/sup&gt; monocytes. Therefore, we demonstrated the potential of systems immunology using multiple cell-type and cell-state-specific analyses to identify correlates of infection severity and host cellular activity contributing to an effective anti-viral response.
</summary>
<dc:date>2023-12-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Full-length single-cell BCR sequencing paired with RNA sequencing reveals convergent responses to pneumococcal vaccination</title>
<link href="https://hdl.handle.net/1721.1/163488" rel="alternate"/>
<author>
<name>Morgan, Duncan M</name>
</author>
<author>
<name>Zhang, Yiming J</name>
</author>
<author>
<name>Kim, Jin-Hwan</name>
</author>
<author>
<name>Murillo, MaryAnn</name>
</author>
<author>
<name>Singh, Suddham</name>
</author>
<author>
<name>Loschko, Jakob</name>
</author>
<author>
<name>Surendran, Naveen</name>
</author>
<author>
<name>Sekulovic, Ognjen</name>
</author>
<author>
<name>Feng, Ellie</name>
</author>
<author>
<name>Shi, Shuting</name>
</author>
<author>
<name>Irvine, Darrell J</name>
</author>
<author>
<name>Patil, Sarita U</name>
</author>
<author>
<name>Kanevsky, Isis</name>
</author>
<author>
<name>Chorro, Laurent</name>
</author>
<author>
<name>Christopher Love, J</name>
</author>
<id>https://hdl.handle.net/1721.1/163488</id>
<updated>2026-04-14T03:27:05Z</updated>
<published>2024-09-28T00:00:00Z</published>
<summary type="text">Full-length single-cell BCR sequencing paired with RNA sequencing reveals convergent responses to pneumococcal vaccination
Morgan, Duncan M; Zhang, Yiming J; Kim, Jin-Hwan; Murillo, MaryAnn; Singh, Suddham; Loschko, Jakob; Surendran, Naveen; Sekulovic, Ognjen; Feng, Ellie; Shi, Shuting; Irvine, Darrell J; Patil, Sarita U; Kanevsky, Isis; Chorro, Laurent; Christopher Love, J
Single-cell RNA sequencing (scRNA-seq) can resolve transcriptional features from individual cells, but scRNA-seq techniques capable of resolving the variable regions of B cell receptors (BCRs) remain limited, especially from widely-used 3′-barcoded libraries. Here, we report a method that can recover paired, full-length variable region sequences of BCRs from 3′-barcoded scRNA-seq libraries. We first verify this method (B3E-seq) can produce accurate, full-length BCR sequences. We then apply this method to profile B cell responses elicited against the capsular polysaccharide of Streptococcus pneumoniae serotype 3 (ST3) by glycoconjugate vaccines in five infant rhesus macaques. We identify BCR features associated with specificity for the ST3 antigen which are present in multiple vaccinated monkeys, indicating a convergent response to vaccination. These results demonstrate the utility of our method to resolve key features of the B cell repertoire and profile antigen-specific responses elicited by vaccination.
</summary>
<dc:date>2024-09-28T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rapidity and multiplicity dependence of charged-particle flow in pPb collisions at s NN = 8.16 TeV</title>
<link href="https://hdl.handle.net/1721.1/163487" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<author>
<name>LHCB Collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163487</id>
<updated>2026-04-14T03:26:41Z</updated>
<published>2025-10-15T00:00:00Z</published>
<summary type="text">Rapidity and multiplicity dependence of charged-particle flow in pPb collisions at s NN = 8.16 TeV
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.; LHCB Collaboration
The elliptic and triangular flow of charged particles are measured using two-particle angular correlations in pPb collisions in the pseudorapidity range 2.0 &lt; |η| &lt; 4.8. The data sample was collected by the LHCb experiment in 2016 at a centre-of-mass energy per nucleon pair of s NN = 8.16 TeV, containing in total approximately 1.5 billion collision events. Non-flow contributions are obtained in low-multiplicity collisions and subtracted to extract the flow harmonics. The results are presented as a function of event multiplicity and hadron transverse momentum. Comparisons with a full (3+1)D dynamic model indicate that it overestimates the measured elliptic flow. A comparison between the forward and backward regions reveals no significant differences in flow parameters, suggesting that final-state effects may dominate over initial-state effects in the origin of flow in small systems.
</summary>
<dc:date>2025-10-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Truth and perspective</title>
<link href="https://hdl.handle.net/1721.1/163486" rel="alternate"/>
<author>
<name>Ricciardi, Giuseppe</name>
</author>
<author>
<name>Reuter, Kevin</name>
</author>
<id>https://hdl.handle.net/1721.1/163486</id>
<updated>2026-04-14T03:26:46Z</updated>
<published>2025-10-23T00:00:00Z</published>
<summary type="text">Truth and perspective
Ricciardi, Giuseppe; Reuter, Kevin
Several studies in experimental philosophy and semantics have shown that a substantial number of English speakers consider a statement true even if it does not align with the facts, as long as it is justified from the speaker's perspective. These findings challenge the prevailing view among philosophers that truth in the empirical domain is uniformly based on a statement's correspondence to reality. In this study, we explore how perspective-taking influences truth assessments by showing that this influence depends on how the critical question assessing the statement’s truth is phrased. Our results show that when the question targets only the proposition, e.g., “Is it true that [the uttered proposition]?”), participants typically apply a correspondence view of truth—consistent with philosophical convention. But when the question also highlights the speaker (e.g., “Is [the speaker]’s answer true?”), many participants shift toward judging the statement from the speaker’s perspective. We discuss four possible explanations for this behavior and examine the implications of the findings for other philosophical discussions concerning truth and lying, the theory of reference, and norms of assertion.
</summary>
<dc:date>2025-10-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Curtain Model for CAT(0) Spaces and Isometries</title>
<link href="https://hdl.handle.net/1721.1/163485" rel="alternate"/>
<author>
<name>Chen, Yutong</name>
</author>
<id>https://hdl.handle.net/1721.1/163485</id>
<updated>2026-04-14T03:26:38Z</updated>
<published>2025-07-30T00:00:00Z</published>
<summary type="text">Curtain Model for CAT(0) Spaces and Isometries
Chen, Yutong
This paper studies the dynamics of isometries in the curtain model, which is used to capture the hyperbolicity in a fixed CAT(0) space. We establish several fundamental properties and fully classify the behavior of semisimple isometries of a CAT(0) space in the associated curtain model. In the nonsemisimple case, we restrict the behavior of parabolic actions with positive translation length in the curtain model in most cases of interest, allowing the use of ping-pong-like techniques on the curtain model to provide insights into the study of CAT(0) groups.
</summary>
<dc:date>2025-07-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>An Algorithm for Estimating the Crossing Number of Dense Graphs, and Continuous Analogs of the Crossing and Rectilinear Crossing Numbers</title>
<link href="https://hdl.handle.net/1721.1/163484" rel="alternate"/>
<author>
<name>Solé-Pi, Oriol</name>
</author>
<id>https://hdl.handle.net/1721.1/163484</id>
<updated>2026-04-14T03:26:39Z</updated>
<published>2025-10-21T00:00:00Z</published>
<summary type="text">An Algorithm for Estimating the Crossing Number of Dense Graphs, and Continuous Analogs of the Crossing and Rectilinear Crossing Numbers
Solé-Pi, Oriol
We present a deterministic n 2 + o ( 1 ) -time algorithm that approximates the crossing number of any graph G of order n up to an additive error of o ( n 4 ) . We also provide a randomized polynomial-time algorithm that constructs a drawing of G with cr ( G ) + o ( n 4 ) crossings. These results yield a 1 + o ( 1 ) approximation algorithm for the crossing number of dense graphs. Our work complements a paper of Fox, Pach and Súk [20], who obtained similar results for the rectilinear crossing number. The results in [20] and in this paper imply that the (normalized) crossing and rectilinear crossing numbers are estimable parameters. Motivated by this, we introduce two graphon parameters, the crossing density and the rectilinear crossing density, and we prove that, in a precise sense, these are the correct continuous analogs of the crossing and rectilinear crossing numbers of graphs.
</summary>
<dc:date>2025-10-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Improved measurement of η/η′ mixing in B s 0 → J / ψ η ′ decays</title>
<link href="https://hdl.handle.net/1721.1/163483" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<author>
<name>Aleksiejunas, R.</name>
</author>
<id>https://hdl.handle.net/1721.1/163483</id>
<updated>2026-04-14T03:26:43Z</updated>
<published>2025-10-14T00:00:00Z</published>
<summary type="text">Improved measurement of η/η′ mixing in B s 0 → J / ψ η ′ decays
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.; Aleksiejunas, R.
Branching fraction ratios between the decays B s 0 → J / ψ η ′ are measured using proton-proton collision data collected by the LHCb experiment at centre-of-mass energies of 7, 8 and 13 TeV, corresponding to an integrated luminosity of 9 fb−1. The measured ratios of these branching fractions are B B 0 → J / ψη ′ B B 0 → J / ψη = 0.48 ± 0.06 ± 0.02 ± 0.01 , B B s 0 → J / ψη ′ B B s 0 → J / ψη = 0.80 ± 0.02 ± 0.02 ± 0.01 , where the uncertainties are statistical, systematic and related to the precision of the η(′) branching fractions, respectively. They are used to constrain the η/η′ mixing angle, ϕP, and to probe the presence of a possible glueball component in the η′ meson, described by the gluonic mixing angle ϕG. The obtained results are ϕ P = 41.6 − 1.2 + 1.0 ∘ , ϕ G = 28.1 − 4.0 + 3.9 ∘ , where the uncertainties are statistically dominated. While the value of ϕP is compatible with existing experimental determinations and theoretical calculations, the angle ϕG differs from zero by more than four standard deviations, which points to a substantial glueball component in the η′ meson and/or unexpectedly large contributions from gluon-mediated processes in these decays. The absolute branching fractions are also measured relative to that of the well-established B s 0 → J / ψϕ decay, which serves as the normalisation channel. These results supersede the previous LHCb measurements and are the most precise to date.
</summary>
<dc:date>2025-10-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Zero carbon challenges in supply chain management to achieve sustainability</title>
<link href="https://hdl.handle.net/1721.1/163482" rel="alternate"/>
<author>
<name>Derse, O.</name>
</author>
<author>
<name>Yontar, E.</name>
</author>
<id>https://hdl.handle.net/1721.1/163482</id>
<updated>2025-11-01T04:06:55Z</updated>
<published>2025-08-19T00:00:00Z</published>
<summary type="text">Zero carbon challenges in supply chain management to achieve sustainability
Derse, O.; Yontar, E.
Reducing carbon emissions due to increasing climate concerns has become important at every stage of the supply chain line, as it is in every sector. Many activities take place in the supply chain processes and it takes serious work for these activities to be in line with the net zero carbon strategy. This paper addresses the challenges that are preventing the supply chain from achieving its net zero carbon target. Challenges addressed; It is categorized as environmental challenges, financial and economic challenges, organizational challenges, social and consumer challenges, technical and technological challenges, and administrative challenges. Depending on the 6 main categories determined, 24 sub-challenges are determined and the network structure, relations and rankings of the determined challenges are determined by the Analytical Network Process (ANP) method, one of the Multi-Criteria Decision Making methods. The risks of the challenges identified by the ANP-based Failure Mode and Effect Analysis (FMEA) are also listed. According to the ANP and ANP based FMEA methods, it is seen that the riskiest results and the most important challenges are Financial and Economic challenges and Technical and Technological challenges, respectively. According to the ANP, the most important challenges are respectively “Lack of technical competence and field experts”, “Lack of resources”, and “High initial investment cost”. According to the ANP based FMEA, the most important challenges are “Lack of resources”, “Lack of technical competence and field experts” and “Uncertain long-term economic return/payback periods and investment risks”, respectively. In the study, it is thought that the relationships and rankings determined will be a roadmap to reach net zero carbon targets in supply chains.
</summary>
<dc:date>2025-08-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Robust longitudinal and lateral control for mixed-vehicular platoons with string stability guarantees</title>
<link href="https://hdl.handle.net/1721.1/163481" rel="alternate"/>
<author>
<name>Chen, Qien</name>
</author>
<author>
<name>Wang, Shimin</name>
</author>
<author>
<name>Gao, Bolin</name>
</author>
<author>
<name>Zhan, Zhi</name>
</author>
<author>
<name>Zhong, Renxin</name>
</author>
<id>https://hdl.handle.net/1721.1/163481</id>
<updated>2025-11-01T04:06:56Z</updated>
<published>2025-07-16T00:00:00Z</published>
<summary type="text">Robust longitudinal and lateral control for mixed-vehicular platoons with string stability guarantees
Chen, Qien; Wang, Shimin; Gao, Bolin; Zhan, Zhi; Zhong, Renxin
Integrating longitudinal and lateral controls for vehicular platoons mixed with Connected and Autonomous Vehicles (CAVs) and Level-2 Automated Vehicles (L2AVs) to guarantee string stability against model uncertainty and external disturbances is essential yet challenging. This paper tackles this challenge by introducing a novel integrated longitudinal and lateral control (ILLC) strategy that guarantees input-to-state string stability (ISSS) for heterogeneous vehicular platoons. The proposed ILLC strategy significantly enhances the robustness of vehicular platoons by maintaining the desired headway and ensuring the ISSS against disturbances. By incorporating a disturbance observer, we directly address the disturbance estimation error within the string stability analysis. We validate the effectiveness of our method through simulations of various traffic scenarios. Compared to conventional cooperative adaptive cruise control (CACC) techniques, the proposed method achieves faster convergence to the desired states and exhibits bounded state fluctuations. Furthermore, our method can effectively attenuate external disturbances and dissipate stop-and-go waves.
</summary>
<dc:date>2025-07-16T00:00:00Z</dc:date>
</entry>
<entry>
<title>Finite Rank Perturbation of Non-Hermitian Random Matrices: Heavy Tail and Sparse Regimes</title>
<link href="https://hdl.handle.net/1721.1/163480" rel="alternate"/>
<author>
<name>Han, Yi</name>
</author>
<id>https://hdl.handle.net/1721.1/163480</id>
<updated>2025-11-01T04:06:58Z</updated>
<published>2025-09-29T00:00:00Z</published>
<summary type="text">Finite Rank Perturbation of Non-Hermitian Random Matrices: Heavy Tail and Sparse Regimes
Han, Yi
Abstract In this work we investigate spectral properties of squared random matrices with independent entries that have only two finite moments. We revisit the problem of perturbing a large, i.i.d. random matrix by a finite rank error. We prove that under a merely second moment condition, for a large class of perturbation matrix with bounded rank and bounded operator norm, the outlier eigenvalues of perturbed matrix still converge to that of the perturbation, which was previously known when matrix entries have finite fourth moment. We then show that the same perturbation holds for very sparse random matrices with i.i.d. entries, all the way up to a constant number of nonzero entries per row and column.
</summary>
<dc:date>2025-09-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Arene extrusion as an approach to reductive elimination at boron: implication of carbene-ligated haloborylene as a transient reactive intermediate</title>
<link href="https://hdl.handle.net/1721.1/163479" rel="alternate"/>
<author>
<name>Zhang, Chonghe</name>
</author>
<author>
<name>Gilliard, Robert J</name>
</author>
<author>
<name>Cummins, Christopher C</name>
</author>
<id>https://hdl.handle.net/1721.1/163479</id>
<updated>2026-04-14T03:27:11Z</updated>
<published>2024-10-03T00:00:00Z</published>
<summary type="text">Arene extrusion as an approach to reductive elimination at boron: implication of carbene-ligated haloborylene as a transient reactive intermediate
Zhang, Chonghe; Gilliard, Robert J; Cummins, Christopher C
Herein, we report boron-centered arene extrusion reactions to afford putative cyclic(alkyl)(amino) carbene (CAAC)-ligated chloroborylene and bromoborylene intermediates. The borylene precursors, chloro-boranorbornadiene (ClB(C6Me6), 2Cl) and bromo-boranorbornadiene (BrB(C6Me6), 2Br) were synthesized through the reaction of the corresponding 1-halo-2,3,4,5-tetramethylborole dimer (XBC4Me4)2 (X = Cl, 1Cl; X = Br, 1Br) with 2-butyne. Treatment of 2Cl with CAACs resulted in the release of di-coordinate chloro-borylene (CAAC)BCl from hexamethylbenzene (C6Me6) at room temperature. In contrast, the reaction of 2Br with CAAC led to the formation of a boronium species [(CAAC)BC6Me6]+Br− (7) at room temperature. Heating 7 in toluene promoted the release of di-coordinate bromo-borylene (CAAC)BBr as a transient species. Surprisingly, heating 7 in dichloromethane resulted in the C–H activation of hexamethylbenzene. The conversion of a CAAC-stabilized bromo-borepin to a borylene, a boron-centered retro Büchner reaction, was also investigated.
</summary>
<dc:date>2024-10-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Clustering in typical unit-distance avoiding sets</title>
<link href="https://hdl.handle.net/1721.1/163478" rel="alternate"/>
<author>
<name>Cohen, A.</name>
</author>
<author>
<name>Mani, N.</name>
</author>
<id>https://hdl.handle.net/1721.1/163478</id>
<updated>2025-11-01T04:06:57Z</updated>
<published>2025-09-22T00:00:00Z</published>
<summary type="text">Clustering in typical unit-distance avoiding sets
Cohen, A.; Mani, N.
In the 1960s Moser asked how dense a subset of R d can be if no pairs of points in the subset are exactly distance 1 apart. There has been a long line of work showing upper bounds on this density. One curious feature of dense unit distance avoiding sets is that they appear to be ''clumpy,'' i.e. forbidding unit distances comes hand in hand with having more than the expected number distance ≈ 2 pairs. In this work we rigorously establish this phenomenon in R 2 . We show that dense unit distance avoiding sets have over-represented distance ≈ 2 pairs, and that this clustering extends to typical unit distance avoiding sets. To do so, we build off of the linear programming approach used previously to prove upper bounds on the density of unit distance avoiding sets.
</summary>
<dc:date>2025-09-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Structure of Lower Tails in Sparse Random Graphs</title>
<link href="https://hdl.handle.net/1721.1/163477" rel="alternate"/>
<author>
<name>Chin, Byron</name>
</author>
<id>https://hdl.handle.net/1721.1/163477</id>
<updated>2026-04-14T03:27:08Z</updated>
<published>2025-08-11T00:00:00Z</published>
<summary type="text">Structure of Lower Tails in Sparse Random Graphs
Chin, Byron
We study the typical structure of a sparse Erdős–Rényi random graph conditioned on the lower tail subgraph count event. We show that in certain regimes, a typical graph sampled from the conditional distribution resembles the entropy minimizer of the mean field approximation in the sense of both subgraph counts and cut norm. The main ingredients are an adaptation of an entropy increment scheme of Kozma and Samotij, and a new stability for the solution of the associated entropy variational problem. The proof can be interpreted as a structural application of the new probabilistic hypergraph container lemma for sparser than average sets, and suggests a more general framework for establishing such typical behavior statements.
</summary>
<dc:date>2025-08-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>t-channel dark matter models – a whitepaper</title>
<link href="https://hdl.handle.net/1721.1/163476" rel="alternate"/>
<author>
<name>Arina, Chiara</name>
</author>
<author>
<name>Fuks, Benjamin</name>
</author>
<author>
<name>Panizzi, Luca</name>
</author>
<author>
<name>Baker, Michael J.</name>
</author>
<author>
<name>Cornell, Alan S.</name>
</author>
<author>
<name>Heisig, Jan</name>
</author>
<author>
<name>Maier, Benedikt</name>
</author>
<author>
<name>Pedro, Rute</name>
</author>
<author>
<name>Trischuk, Dominique</name>
</author>
<author>
<name>Agin, Diyar</name>
</author>
<author>
<name>Arbey, Alexandre</name>
</author>
<author>
<name>Arcadi, Giorgio</name>
</author>
<author>
<name>Bagnaschi, Emanuele</name>
</author>
<author>
<name>Bai, Kehang</name>
</author>
<author>
<name>Bhatia, Disha</name>
</author>
<author>
<name>Becker, Mathias</name>
</author>
<author>
<name>Belyaev, Alexander</name>
</author>
<author>
<name>Benoit, Ferdinand</name>
</author>
<author>
<name>Blanke, Monika</name>
</author>
<author>
<name>Burzynski, Jackson</name>
</author>
<id>https://hdl.handle.net/1721.1/163476</id>
<updated>2026-04-14T03:24:23Z</updated>
<published>2025-09-12T00:00:00Z</published>
<summary type="text">t-channel dark matter models – a whitepaper
Arina, Chiara; Fuks, Benjamin; Panizzi, Luca; Baker, Michael J.; Cornell, Alan S.; Heisig, Jan; Maier, Benedikt; Pedro, Rute; Trischuk, Dominique; Agin, Diyar; Arbey, Alexandre; Arcadi, Giorgio; Bagnaschi, Emanuele; Bai, Kehang; Bhatia, Disha; Becker, Mathias; Belyaev, Alexander; Benoit, Ferdinand; Blanke, Monika; Burzynski, Jackson
This report, summarising work achieved in the context of the LHC Dark Matter Working Group, investigates the phenomenology of t-channel dark matter models, spanning minimal setups with a single dark matter candidate and mediator to more complex constructions closer to UV-complete models. For each considered class of models, we examine collider, cosmological and astrophysical implications. In addition, we explore scenarios with either promptly decaying or long-lived particles, as well as featuring diverse dark matter production mechanisms in the early universe. By providing a unified analysis framework, numerical tools and guidelines, this work aims to support future experimental and theoretical efforts in exploring t-channel dark matter models at colliders and in cosmology.
</summary>
<dc:date>2025-09-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Organic aerosol formation from 222 nm germicidal light: ozone-initiated vs. non-ozone pathways</title>
<link href="https://hdl.handle.net/1721.1/163475" rel="alternate"/>
<author>
<name>Goss, Matthew B</name>
</author>
<author>
<name>Kroll, Jesse H</name>
</author>
<id>https://hdl.handle.net/1721.1/163475</id>
<updated>2026-04-14T03:27:06Z</updated>
<published>2024-10-17T00:00:00Z</published>
<summary type="text">Organic aerosol formation from 222 nm germicidal light: ozone-initiated vs. non-ozone pathways
Goss, Matthew B; Kroll, Jesse H
Germicidal ultraviolet lamps outputting 222 nm light (GUV222) have the potential to reduce the airborne spread of disease through effective inactivation of pathogens, while remaining safe for direct human exposure. However, recent studies have identified these lamps as a source of ozone and other secondary pollutants such as secondary organic aerosol (SOA), and the health effects of these pollutants must be balanced against the benefits of pathogen inactivation. While ozone reactions are likely to account for much of this secondary indoor air pollution, 222 nm light may initiate additional non-ozone chemical processes, including the formation of other oxidants and direct photolytic reactions, which are not as well understood. This work examines the impacts of GUV222 on SOA formation and composition by comparing limonene oxidation under GUV222 and O3-only control conditions in a laboratory chamber. Differences between these experiments enable us to distinguish patterns in aerosol formation driven by ozone chemistry from those driven by other photolytic processes. These experiments also examine the influence of the addition of NO2 and nitrous acid (HONO), and investigate SOA formation in sampled outdoor air. SOA composition and yield vary only slightly with respect to GUV222vs. ozone-only conditions; NO2 and HONO photolysis do not appreciably affect the observed chemistry. In contrast, we observe consistent new particle formation under high-fluence 222 nm light (45 μW cm−2) that differs substantially from ozone-only experiments. This observed new particle formation represents an additional reason to keep GUV222 fluence rates to the lowest effective levels.
</summary>
<dc:date>2024-10-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Leveraging Electrons for Electrochemical CO2 Capture Using a Hemi-Labile Iron Complex</title>
<link href="https://hdl.handle.net/1721.1/163474" rel="alternate"/>
<author>
<name>Seo, Hyowon</name>
</author>
<author>
<name>Chen, Ying</name>
</author>
<author>
<name>Walter, Eric</name>
</author>
<author>
<name>Abdinejad, Maryam</name>
</author>
<author>
<name>Hatton, T Alan</name>
</author>
<id>https://hdl.handle.net/1721.1/163474</id>
<updated>2026-04-14T03:27:08Z</updated>
<published>2025-08-04T00:00:00Z</published>
<summary type="text">Leveraging Electrons for Electrochemical CO2 Capture Using a Hemi-Labile Iron Complex
Seo, Hyowon; Chen, Ying; Walter, Eric; Abdinejad, Maryam; Hatton, T Alan
Climate change, driven by anthropogenic carbon emissions, demands urgent action to prevent a 2050 tipping point. With CO2 levels at 427 ppm (50% above pre-industrial levels), deploying energy-efficient carbon capture technologies is crucial. Electrochemical carbon capture processes that have been touted to have the potential to meet these needs rely on the applied cell voltage, and electron utilization (CO2 molecules separated per electron), which has generally been asserted to have a theoretical limit of one. Here, we introduce an electron-leveraging strategy to enhance electron utilization beyond this limit to 1.43 by employing Fe-EDDHA, a redox-active coordination complex having a ligand with multiple hemi-labile coordination sites. The reversibility and robustness of the system were enabled by the efficient prevention of CO2 reduction upon the introduction of nicotinamide as a guardian of the iron(2+) center. The proof-of-concept cyclic system exhibits a minimum operational energy of 22.6 kJe mol−1 and an average of 63.7 kJe mol−1 over 29 cycles, using a simulated flue gas (15% CO2). Our electron-leveraging strategy holds promise for advancing energy-efficient electrochemical carbon capture technologies, and offers an alternative to prevalent redox potential shifting methods proposed to mitigate undesired electron transfer reactions in redox-active materials across diverse operational conditions.
</summary>
<dc:date>2025-08-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Programmable Nanovaccine Platform Based on M13 Bacteriophage for Personalized Cancer Vaccine and Therapy</title>
<link href="https://hdl.handle.net/1721.1/163473" rel="alternate"/>
<author>
<name>Huang, Shengnan</name>
</author>
<author>
<name>He, Yanpu</name>
</author>
<author>
<name>Madow, Allison</name>
</author>
<author>
<name>Peng, Huaiyao</name>
</author>
<author>
<name>Griffin, Mirielle</name>
</author>
<author>
<name>Qi, Jifa</name>
</author>
<author>
<name>Huang, Mantao</name>
</author>
<author>
<name>Amoroso, Heather</name>
</author>
<author>
<name>Abrashoff, Riley</name>
</author>
<author>
<name>Heldman, Nimrod</name>
</author>
<author>
<name>Belcher, Angela M</name>
</author>
<id>https://hdl.handle.net/1721.1/163473</id>
<updated>2026-04-14T03:27:10Z</updated>
<published>2025-08-27T00:00:00Z</published>
<summary type="text">A Programmable Nanovaccine Platform Based on M13 Bacteriophage for Personalized Cancer Vaccine and Therapy
Huang, Shengnan; He, Yanpu; Madow, Allison; Peng, Huaiyao; Griffin, Mirielle; Qi, Jifa; Huang, Mantao; Amoroso, Heather; Abrashoff, Riley; Heldman, Nimrod; Belcher, Angela M
Nanovaccines co-assemble antigens and adjuvants to elicit robust immuneresponses but often require complex synthesis and post-modiﬁcationprocedures. Here, a programmable nanovaccine platform based on the M13bacteriophage is developed for the scalable production of vaccines andsingle-step modular engineering of adjuvanticity, length, and antigen density.By reprogramming the sequence and size of the noncoding phage genome,the Toll-like receptor 9 activation and the length of the phage are preciselycontrolled. With a novel molecular engineering approach, the antigen densityis tuned from 13.6% to 70.3%. A systematic modulation reveals an optimaladjuvanticity at a constant antigen density for maximum anti-tumor CD8+ Tcell response, and vice versa, using the model antigen SIINFEKL. The M13phage-based nanovaccine induces durable memory immunity lasting over ayear. In addition, a 24-fold increase in neoantigen-speciﬁc CD8+ T cellfrequency is achieved when increasing both the adjuvanticity and antigendensity. Furthermore, when combined with anti-PD-1 therapy, the M13phage-based personalized vaccine eradicates established MC-38 tumors in75% of treated animals and they develop 100% resistance against tumorinvasion when challenged 5 months after treatment. These ﬁndings establishM13 phage as a powerful and versatile nanovaccine platform withtransformative potential for personalized cancer immunotherapy.
</summary>
<dc:date>2025-08-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Efficient Approximate Unitary Designs from Random Pauli Rotations</title>
<link href="https://hdl.handle.net/1721.1/163472" rel="alternate"/>
<author>
<name>Haah, Jeongwan</name>
</author>
<author>
<name>Liu, Yunchao</name>
</author>
<author>
<name>Tan, Xinyu</name>
</author>
<id>https://hdl.handle.net/1721.1/163472</id>
<updated>2025-11-01T04:07:10Z</updated>
<published>2025-10-30T00:00:00Z</published>
<summary type="text">Efficient Approximate Unitary Designs from Random Pauli Rotations
Haah, Jeongwan; Liu, Yunchao; Tan, Xinyu
We construct random walks on simple Lie groups that quickly converge to the Haar measure for all moments up to order t. Specifically, a step of the walk on the unitary or orthogonal group of dimension 2 n is a random Pauli rotation e i θ P / 2 . The spectral gap of this random walk is shown to be Ω ( 1 / t ) , which coincides with the best previously known bound for a random walk on the permutation group on { 0 , 1 } n . This implies that the walk gives an ε -approximate unitary t-design in depth O ( n t 2 + t log 1 ε ) d where d = O ( log n ) is the circuit depth to implement e i θ P / 2 . Our simple proof uses quadratic Casimir operators of Lie algebras.
</summary>
<dc:date>2025-10-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>How FDI reshapes host markets’ trade profile and politics</title>
<link href="https://hdl.handle.net/1721.1/163471" rel="alternate"/>
<author>
<name>Kim, In Song</name>
</author>
<author>
<name>Liao, Steven</name>
</author>
<author>
<name>Miyano, Sayumi</name>
</author>
<id>https://hdl.handle.net/1721.1/163471</id>
<updated>2026-04-14T03:27:05Z</updated>
<published>2025-09-12T00:00:00Z</published>
<summary type="text">How FDI reshapes host markets’ trade profile and politics
Kim, In Song; Liao, Steven; Miyano, Sayumi
A fast-growing literature indicates that ﬁrms’ engagement in foreign directinvestment (FDI) and trade is key to understanding deepening global valuechains and their political implications. However, existing studies have mainlyfocused on the ramiﬁcations for FDI home countries while often overlookingthe ﬁrm-product level interactions between FDI and trade, where their inter-dependencies manifest. This study examines how ﬁrms’ FDI reshapes hostcountries’ trade proﬁles at this level, empowering new political coalitions fortrade liberalization. Analyzing greenﬁeld FDI projects globally since 2003, weﬁnd that hosts experienced an average increase of over 45 export products inthe following year. To overcome the challenges of connecting ﬁrms to prod-ucts, we link FDI data with Vietnamese customs records. We ﬁnd that Viet-namese export (import) volumes of FDI-related products increased by 90%(30%) within 4 years of initial investments. Importantly, these products alsobeneﬁted from more substantial tariff cuts in bilateral Free Trade Agreements.
</summary>
<dc:date>2025-09-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Integrating metabolic scaling and coexistence theories</title>
<link href="https://hdl.handle.net/1721.1/163470" rel="alternate"/>
<author>
<name>Saavedra, Serguei</name>
</author>
<author>
<name>Arroyo, José Ignacio</name>
</author>
<author>
<name>Deng, Jie</name>
</author>
<author>
<name>Marquet, Pablo A</name>
</author>
<author>
<name>Kempes, Christopher P</name>
</author>
<id>https://hdl.handle.net/1721.1/163470</id>
<updated>2026-04-14T03:27:04Z</updated>
<published>2025-08-05T00:00:00Z</published>
<summary type="text">Integrating metabolic scaling and coexistence theories
Saavedra, Serguei; Arroyo, José Ignacio; Deng, Jie; Marquet, Pablo A; Kempes, Christopher P
Metabolic scaling theory has been pivotal in formalizing the expected energyexpenditures across populations as a function of body size. Coexistence theoryhas provided a mathematization of the environmental conditions compatiblewith multispecies coexistence. Yet, it has been challenging to explain howobserved community-wide patterns, such as the inverse relationship betweenpopulation abundance density and body size, can be unified under boththeories. Here, we provide the foundation for a tractable, scalable, and extend-able framework to study the coexistence of resource-mediated competingpopulations as a function of their body size. For a given thermal domain andresponse, this integration reveals that the metabolically predicted 1/4 powerdependence of carrying capacity of biomass density on body size can be under-stood as the average distribution of carrying capacities across feasible environ-mental conditions, especially for large communities. In line with empiricalobservations, our integration predicts that such average distribution leads tocommunities in which population biomass densities at equilibrium are inde-pendent from body size, and consequently, population abundance densitiesare inversely related to body size. This integration opens new opportunities toincrease our understanding of how metabolic scaling relationships at thepopulation level can shape processes at the community level under changingenvironments.
</summary>
<dc:date>2025-08-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Covariant phase space and L∞ algebras</title>
<link href="https://hdl.handle.net/1721.1/163469" rel="alternate"/>
<author>
<name>Bernardes, Vinícius</name>
</author>
<author>
<name>Erler, Theodore</name>
</author>
<author>
<name>Fırat, Atakan H.</name>
</author>
<id>https://hdl.handle.net/1721.1/163469</id>
<updated>2026-04-14T03:23:58Z</updated>
<published>2025-09-05T00:00:00Z</published>
<summary type="text">Covariant phase space and L∞ algebras
Bernardes, Vinícius; Erler, Theodore; Fırat, Atakan H.
We propose a symplectic structure for the phase space of a generic Lagrangian field theory expressed in the framework of L∞ algebras. The symplectic structure does not require explicit knowledge of the derivative content of the Lagrangian, and therefore is applicable to nonlocal models, such as string field theory, where traditional constructions are difficult to apply. We test our proposal in a number of examples ranging from general relativity to p-adic string theory.
</summary>
<dc:date>2025-09-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Deciphering the origins of the elements through galactic archeology</title>
<link href="https://hdl.handle.net/1721.1/163468" rel="alternate"/>
<author>
<name>Farouqi, Khalil</name>
</author>
<author>
<name>Frebel, Anna</name>
</author>
<author>
<name>Thielemann, Friedrich-Karl</name>
</author>
<id>https://hdl.handle.net/1721.1/163468</id>
<updated>2026-04-14T03:24:18Z</updated>
<published>2025-09-12T00:00:00Z</published>
<summary type="text">Deciphering the origins of the elements through galactic archeology
Farouqi, Khalil; Frebel, Anna; Thielemann, Friedrich-Karl
Low-metallicity stars preserve the signatures of the first stellar nucleosynthesis events in the Galaxy, as their surface abundances reflect the composition of the interstellar medium from the time when they were born. Aside from primordial Big Bang nucleosynthesis, massive stars, due to their short lifetimes, dominate the wind and explosive ejecta into the interstellar medium of the early Galaxy. Most of them will end as core-collapse supernova (CCSN) explosions, and typical ejected abundance distributions, e.g. in terms of the α -element-to-Fe ratios, reflect these contributions. Essentially all CCSNe contribute 56Fe (decaying from radioactive 56Ni). Therefore, low-metallicity stars can be used to test whether the abundances of any other elements are correlated with those of Fe, i.e. whether these elements have been co-produced in the progenitor sources or if they require either a different or additional astrophysical origin(s). The present analysis focuses on stars with [Fe/H]&lt;-2, as they probe the earliest formation phase of the Galaxy when only one or very few nucleosynthesis events had contributed their ejecta to the gas from which the lowest metallicity stars form. This was also the era before low and intermediate mass stars (or type Ia supernovae) could contribute any additional heavy elements. Following earlier work on the origin of heavy r-process elements [1], we extend the present study to examine Pearson and Spearman correlations of Fe with Li, Be, C, N, O, Na, Mg, Si, S, K, Ca, Ti, Cr, Ni, Zn, Ge, Se, Sr, Y, Zr, Mo, Ba, La, Ce, Sm, Eu, Gd, Dy, Yb, Lu, Hf, Os, Ir, Pb, and Th, using high-resolution stellar abundance data from the SAGA [2] and JINA [3] databases. The main goal is to identify which of the observed elements (i) may have been co-produced with Fe in (possibly a variety of) CCSNe, and which elements require (ii) either a completely different, or (iii) at least an additional astrophysical origin.
</summary>
<dc:date>2025-09-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Absolute Security with Multiple-Slit Diffraction in Terahertz Communication Links</title>
<link href="https://hdl.handle.net/1721.1/163467" rel="alternate"/>
<author>
<name>Shiri, Yaseman</name>
</author>
<author>
<name>Yeh, Chia-Yi</name>
</author>
<author>
<name>Fang, Zhaoji</name>
</author>
<author>
<name>Shrestha, Rabi</name>
</author>
<author>
<name>Guerboukha, Hichem</name>
</author>
<author>
<name>Médard, Muriel</name>
</author>
<author>
<name>Malowicki, John</name>
</author>
<author>
<name>Overrocker, David</name>
</author>
<author>
<name>Fanelli, Paul</name>
</author>
<author>
<name>Thawdar, Ngwe</name>
</author>
<author>
<name>Mittleman, Daniel M.</name>
</author>
<id>https://hdl.handle.net/1721.1/163467</id>
<updated>2025-10-31T03:08:32Z</updated>
<published>2025-08-18T00:00:00Z</published>
<summary type="text">Absolute Security with Multiple-Slit Diffraction in Terahertz Communication Links
Shiri, Yaseman; Yeh, Chia-Yi; Fang, Zhaoji; Shrestha, Rabi; Guerboukha, Hichem; Médard, Muriel; Malowicki, John; Overrocker, David; Fanelli, Paul; Thawdar, Ngwe; Mittleman, Daniel M.
Many widely used antennas in terahertz (THz) directional communications (including horn antennas) are not fully compatible with the recently proposed absolute security approach due to the absence of strong frequency-dependent minima in the intrinsic antenna pattern. To this end, we propose to use a multiple-slit aperture to modify these non-suitable radiation patterns in a non-intrusive manner. Based on the principle of diffraction, the multi-slit aperture creates frequency varying minima critical for absolute security. We show that improved security performance, quantified by the size of the secure region in space (termed blind region), can be achieved by employing a wider diffraction aperture with a wider slit opening. We further characterize how the non-uniform wavefront, which is typical in practical transmission and results in varying amplitude and phase at different slit openings, affects the size of the blind region. This diffraction-based scheme is experimentally demonstrated with a horn antenna operating near 200 GHz. We demonstrate that, while the intrinsic horn antenna yields no blind region for angles within 16° from the intended user, the modified antenna configuration produces strong minima sufficient to create blind regions at angles as small as 4° and an expanding blind region with increasing transmission bandwidth, thus validating the security gain with this approach.
</summary>
<dc:date>2025-08-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>A gravity-based mounting approach for large-scale cryogenic calorimeter arrays</title>
<link href="https://hdl.handle.net/1721.1/163466" rel="alternate"/>
<author>
<name>CUPID Collaboration</name>
</author>
<id>https://hdl.handle.net/1721.1/163466</id>
<updated>2026-04-14T03:24:13Z</updated>
<published>2025-09-02T00:00:00Z</published>
<summary type="text">A gravity-based mounting approach for large-scale cryogenic calorimeter arrays
CUPID Collaboration
Cryogenic calorimeters are among the leading technologies for searching for rare events. The CUPID experiment is exploiting this technology to deploy a tonne-scale detector to search for neutrinoless double-beta decay of 100 Mo. The CUPID collaboration proposed an innovative approach to assembling cryogenic calorimeters in a stacked configuration, held in position solely by gravity. This gravity-based assembly method is unprecedented in the field of cryogenic calorimeters and offers several advantages, including relaxed mechanical tolerances and simplified construction. To assess and optimize its performance, we constructed a medium-scale prototype hosting 28  Li 2 MoO 4 crystals and 30 Ge light detectors, both operated as cryogenic calorimeters at the Laboratori Nazionali del Gran Sasso (Italy). Despite an unexpected excess of noise in the light detectors, the results of this test proved (i) a thermal stability better than ±0.5 mK at 10 mK, (ii) a good energy resolution of Li 2 MoO 4 cryogenic calorimeters, (6.6 ± 2.2) keV FWHM at 2615 keV, and (iii) a Li 2 MoO 4 light yield measured by the closest light detector of 0.36 keV/MeV, sufficient to guarantee the particle identification requested by CUPID.
</summary>
<dc:date>2025-09-02T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Higher Spin-Statistics Theorem for Invertible Quantum Field Theories</title>
<link href="https://hdl.handle.net/1721.1/163465" rel="alternate"/>
<author>
<name>Krulewski, Cameron</name>
</author>
<author>
<name>Stehouwer, Luuk</name>
</author>
<author>
<name>Müller, Lukas</name>
</author>
<id>https://hdl.handle.net/1721.1/163465</id>
<updated>2025-10-31T03:08:24Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">A Higher Spin-Statistics Theorem for Invertible Quantum Field Theories
Krulewski, Cameron; Stehouwer, Luuk; Müller, Lukas
We prove that every unitary invertible quantum field theory satisfies a generalization of the famous spin statistics theorem. To formulate this extension, we define a higher spin action of the stable orthogonal group O on appropriate spacetime manifolds, which extends both the reflection involution and spin flip. On the algebraic side, we define a higher statistics action of O on the universal target for invertible field theories, I Z , which extends both complex conjugation and fermion parity ( - 1 ) F . We prove that every unitary invertible quantum field theory intertwines these actions.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Computational metrology for materials</title>
<link href="https://hdl.handle.net/1721.1/163464" rel="alternate"/>
<author>
<name>Warren, James</name>
</author>
<author>
<name>Read, Jake</name>
</author>
<author>
<name>Seppala, Jonathan</name>
</author>
<author>
<name>Strand, Erik</name>
</author>
<author>
<name>Gershenfeld, Neil</name>
</author>
<id>https://hdl.handle.net/1721.1/163464</id>
<updated>2026-04-14T03:24:12Z</updated>
<published>2025-07-31T00:00:00Z</published>
<summary type="text">Computational metrology for materials
Warren, James; Read, Jake; Seppala, Jonathan; Strand, Erik; Gershenfeld, Neil
Advanced materials hold great promise, but their adoption is impeded by the challenges of developing, characterizing, and modeling them, then of designing, processing, and producing something with them. Even if the results are open, the means to do each of these steps are typically proprietary and segregated. We show how principles of open-source software and hardware can be used to develop open instrumentation for materials science, so that a measurement can be accompanied by a complete computational description of how to reproduce it. And then we show how this approach can be extended to effectively measure predictive computational models rather than just model parameters. We refer to these interrelated concepts as “computational metrology.” These are illustrated with examples including a 3D printer that can do rheological characterization of unfamiliar and variable materials.
</summary>
<dc:date>2025-07-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2024, Music and Theater Arts</title>
<link href="https://hdl.handle.net/1721.1/163463" rel="alternate"/>
<author>
<name>Makan, Keeril</name>
</author>
<id>https://hdl.handle.net/1721.1/163463</id>
<updated>2025-10-31T03:09:53Z</updated>
<published>2024-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2024, Music and Theater Arts
Makan, Keeril
This report contains the following sections: Current Goals, Objectives, Priorities; Accomplishments; Administrative Initiatives; Finances and Funding; Personnel Information; and Teaching and Curriculum.
</summary>
<dc:date>2024-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Assessing Science Robustness in Uncertain Environments: Application to a Uranus Flagship Mission</title>
<link href="https://hdl.handle.net/1721.1/163462" rel="alternate"/>
<author>
<name>Gentgen, Chloe</name>
</author>
<author>
<name>Landau, Damon</name>
</author>
<author>
<name>Weiss, Benjamin P.</name>
</author>
<author>
<name>Jasinski, Jamie M.</name>
</author>
<author>
<name>De Weck, Olivier</name>
</author>
<id>https://hdl.handle.net/1721.1/163462</id>
<updated>2026-04-14T03:26:59Z</updated>
<published>2025-07-14T00:00:00Z</published>
<summary type="text">Assessing Science Robustness in Uncertain Environments: Application to a Uranus Flagship Mission
Gentgen, Chloe; Landau, Damon; Weiss, Benjamin P.; Jasinski, Jamie M.; De Weck, Olivier
Defining science objectives for missions to unexplored bodies can be difficult when the underlying processes and mechanisms are not well understood. This uncertainty presents a challenge when attempting to determine mission requirements to address these objectives. Additionally, uncertainties in the environment may present risks to the system and mission operations. To this end, uncertainty quantification is increasingly used to inform and validate mission design. However, a framework has yet to be developed to support trajectory tradespace exploration of missions targeting uncertain environments through science modeling. The proposed methodology develops a science systems engineering framework integrating a science representation with trajectory designs to compute quantitative science value metrics. The science model is established by identifying relevant physical models (such as governing equations and assumptions) and input variables from the literature, simulation data, as well as past mission results. Variables are defined with probability distributions, and Monte Carlo simulations are used to quantify the uncertainties. For a given trajectory, the analysis outputs predictive probability distributions of the science value metrics, highlighting the trajectory's science performance and its robustness to uncertainty in the physical processes. The framework is applicable to any mission targeting highly dynamic and uncertain processes. This paper demonstrates its application to a future Uranus Flagship mission, focusing on magnetosphere science objectives. Listed as the highest priority Flagship mission by the latest Decadal Survey, a mission to the Uranian system aims to answer science questions regarding Uranus's interior and atmosphere, its satellites and rings, and its magnetosphere. Analytic and numerical models have been developed to understand Uranus' magnetosphere; however, significant uncertainties remain, leading to challenges when defining magnetosphere science investigations. By applying the proposed methodology, this paper shows a significant variation in predicted science metrics of interest (e.g., number of magnetopause crossings) that can be expected from similar trajectories due to varying environment conditions (solar wind and interplanetary magnetic field) or different arrival times at Uranus. These results should inform the flow-down of measurement requirements to mission design requirements for magnetosphere science.
2025 IEEE Aerospace Conference, 1-8 March, Big Sky, MT, USA
</summary>
<dc:date>2025-07-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design and Evaluation of Skill-Based Imitation Learning&#13;
Policies for Robotic Manipulation</title>
<link href="https://hdl.handle.net/1721.1/163461" rel="alternate"/>
<author>
<name>Palleiko, Andrew</name>
</author>
<id>https://hdl.handle.net/1721.1/163461</id>
<updated>2025-10-30T03:24:17Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Design and Evaluation of Skill-Based Imitation Learning&#13;
Policies for Robotic Manipulation
Palleiko, Andrew
Imitation learning is a popular approach for obtaining intelligent robotic policies by learning from human demonstrations. Within this field, there is significant interest in the development of multi-task architectures that can efficiently learn diverse sets of tasks. Skill-based imitation learning methods, which abstract action sequences into ``skill'' representations for planning, offer structural advantages for handling the challenges of multi-task imitation learning that make them an attractive option for this problem. This work presents a novel skill-based imitation learning architecture formulation, with a causal transformer VAE skill-abstraction network paired with an autoregressive transformer planning policy. We find that our skill-abstraction network shows promise in identifying meaningful skills, but that the chosen planning architecture is poorly suited for predicting these skills due to multimodality in the resulting latent space. This is followed by a set of evaluations applied to an existing skill-based method with comparisons to a non-skill-based network on a multi-task dataset. We systematically investigate the performance impacts of six different policy and dataset conditions: data quantity, task variety, retry behavior, control precision, goal representations, and zero-shot transfer. Our experiments reveal limited increases in skill-based policy performance with more demonstrations or task variety, but improvements across architectures through exposure to demonstration retry behavior. Overall, the skill-based architecture demonstrates superior robustness to goal representation variations and low-level process noise than the non-skill-based policy, while neither architecture achieves meaningful zero-shot generalization to novel task combinations. These findings provide insights into the current state of IL methods, with the additional goal of establishing a framework for the evaluation of future multi-task IL architectures.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Towards Multimodal Streaming Perception: A Real-Time&#13;
Perception Scheduling Framework Based on Relevance</title>
<link href="https://hdl.handle.net/1721.1/163460" rel="alternate"/>
<author>
<name>Huang, Dingcheng</name>
</author>
<id>https://hdl.handle.net/1721.1/163460</id>
<updated>2025-10-30T03:24:17Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Towards Multimodal Streaming Perception: A Real-Time&#13;
Perception Scheduling Framework Based on Relevance
Huang, Dingcheng
In modern human-robot collaboration (HRC) applications, multiple perception modules jointly extract visual, auditory, and contextual cues to achieve comprehensive scene understanding, enabling the robot to provide appropriate assistance to human agents intelligently. While executing multiple perception modules on a frame-by-frame basis enhances perception quality and information gains in offline settings, it inevitably accumulates latency, leading to a substantial decline in system performance in streaming perception scenarios. Recent work in scene understanding, termed Relevance, has established a solid foundation for developing efficient methodologies in HRC. However, modern perception pipelines still face challenges related to information redundancy and suboptimal allocation of computational resources. Drawing inspiration from the relevance concept and the inherent sparsity of information in HRC events, we propose a novel lightweight perception scheduling framework that efficiently leverages output from previous frames to estimate and schedule necessary perception modules in real-time. Our experimental results demonstrate that the proposed perception scheduling framework effectively reduces computational latency by up to 27.52% compared to conventional parallel perception pipelines, while also achieving a 72.73% improvement in MMPose accuracy and comparable YOLO accuracy. Additionally, the framework demonstrates high keyframe accuracy, achieving rates of up to 98% in dynamic scenes. The results validate the framework’s capability to enhance real-time perception efficiency without significantly compromising accuracy. Additionally, the framework shows potential as a scalable and systematic solution for multi-modal streaming perception systems in human-robot collaboration.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fracture Mechanics of Networks</title>
<link href="https://hdl.handle.net/1721.1/163459" rel="alternate"/>
<author>
<name>Hartquist, Chase M.</name>
</author>
<id>https://hdl.handle.net/1721.1/163459</id>
<updated>2025-10-30T03:21:32Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Fracture Mechanics of Networks
Hartquist, Chase M.
Networks of interconnected materials permeate throughout nature, biology, and technology due to exceptional mechanical performance. Despite the importance of failure resistance in network design and utility, no existing physical model effectively reconciles strand mechanics and connectivity to predict fracture in diverse networks that constitute polymeric, architected, and biological materials. While traditional models predict the intrinsic fracture energy – the minimum energy to propagate a crack per unit area – of a polymer network is the energy to rupture a layer of chains, they can underestimate experiments by up to two orders of magnitude. In Part I, we show that the intrinsic fracture energy of polymer-like networks stems from nonlocal energy dissipation. We then reveal a general scaling law that captures nonlocal energetic contributions and connects strand mechanics with topological connectivity to universally predict the intrinsic fracture energy of stretchable networks. We measure intrinsic fracture energy using experiments and simulations of 2D and 3D networks with various strand constitutive behaviors, defect densities, strand length distributions, lattice topologies, and length scales. Results show that local strand rupture and nonlocal energy release contribute synergistically to the measured intrinsic fracture energy in networks. These effects align such that the intrinsic fracture energy scales independent of the energy to rupture a strand; it instead depends on the strand rupture force, breaking length, and connectivity. In Part II, we present a model for real polymer fracture and design elastomers with highly regular connectivity. End-linking then deswelling star polymers produces a class of elastomers with low defects and no trapped entanglements, enabling ultrahigh straininduced crystallinity of up to 50% and stretchability that scales beyond the saturated limit. These features promote a pronounced elastocaloric cooling effect and enable reversible two-way tuning of thermal conductivity by strain or temperature modulation. The mechanical and thermal properties of these polymer networks offer promise in addressing challenges in clean energy, thermal management, and biomedicine. Our findings establish a physical basis for understanding network fracture and design principles for fabricating tough polymeric, biological, and architected materials across multiple length scales for advanced applications.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modeling the Sit-to-Stand Transition using Koopman Lifting Linearization and Human State Estimation</title>
<link href="https://hdl.handle.net/1721.1/163458" rel="alternate"/>
<author>
<name>Bell IV, John H.</name>
</author>
<id>https://hdl.handle.net/1721.1/163458</id>
<updated>2025-10-30T03:21:41Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Modeling the Sit-to-Stand Transition using Koopman Lifting Linearization and Human State Estimation
Bell IV, John H.
The Sit-to-Stand (STS) transition is one of the most dangerous daily activities for the elderly population, as it is one of the situations in which falls occur most often. Despite its risks, STS dynamics remain poorly understood, and current STS assistance devices fail to utilize knowledge of STS dynamics to effect their support. This thesis presents contributions to the dynamic modeling of STS and to human-robot collaboration for improving robotic assistance of STS. To coherently capture the multi-phase nature of STS, lifting linearization, a dynamic modeling methodology inspired by Koopman operator theory, to subsume segmented local dynamics in a globally linear dynamic model. A novel class of lifting linearization basis functions, termed “State-Membership Product (SMP)” observables, enables both the seamless blending of local dynamics into a global model, and the direct extraction of phase-specific behaviors from the global model. It is shown that an SMP-Koopman linear model tuned to published data of STS experiments is capable of reproducing the multi-phase STS dynamics with a single linear model. Building on this framework, STS is additionally modeled as a lifted linear feedback control system, composed of an SMP-Koopman-based open-loop biomechanical model of the human body and a linear quadratic regulator (LQR) which guides the body to stand up. The LQR controller, tuned to replicate STS motion, guides the human body model through the phases of STS without explicit phase-switches, improving system robustness. To enhance human-robot collaboration in STS assistance, a framework for estimating patient cooperativeness is also introduced, leveraging a simplified dynamic model and an Extended Kalman Filter. By analyzing a human’s initial response to applied physical and verbal cues, the estimation framework assesses willingness to engage in assisted STS. Together, these contributions advance both the modeling and estimation of STS, offering insights crucial for the development of safe, effective robotic assistance.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Verse and Reversal: The Poetic Return to the Inner Child as Black Revolutionary Praxis</title>
<link href="https://hdl.handle.net/1721.1/163457" rel="alternate"/>
<author>
<name>Dunnell, Kaelyn</name>
</author>
<id>https://hdl.handle.net/1721.1/163457</id>
<updated>2025-10-30T03:25:04Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Verse and Reversal: The Poetic Return to the Inner Child as Black Revolutionary Praxis
Dunnell, Kaelyn
Black revolutionary movements historically have centered the role of the Black child—as either foundation, visionary, or representation of Black liberation. The identity of any given revolutionary movement is characterized by three tenets: resistance, imagination, and love. In order for the individual to uncover the origin of these three tenets for themselves. This thesis is about the poiesis of the revolutionary—the making and re-making of the revolutionary—and in it I argue that the very process of forming revolutionary identity is poetic. I coin the phrase poetic revolutionary to capture that process, which involves tapping into the font of revolutionary soulfulness, which is one’s inner child or the voice and experience of the Black child. The literature guiding this analysis is from June Jordan’s archive hosted at Schlesinger Library, with Voice of the Children, a children’s publication edited by Jordan, as one of the most notable works. I examine June Jordan as the model of the Black revolutionary who has uncovered the language of her child, and I also examine the works of the children she worked with (whose 13– 15-year age ranges, notably, are on the cusp of the definition of childhood that I adopt in this thesis—more in Section I). I gather evidence from workshop diary entries written by Jordan and by her students, poetry excerpts from Voice of the Children, and Jordan’s own writing from her childhood and beyond to support my theory of the poetic revolutionary.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantifying Human Balance Performance and Control to Inform Therapy</title>
<link href="https://hdl.handle.net/1721.1/163456" rel="alternate"/>
<author>
<name>Shiozawa, Kaymie S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163456</id>
<updated>2025-10-30T03:21:23Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Quantifying Human Balance Performance and Control to Inform Therapy
Shiozawa, Kaymie S.
Maintaining balance is essential for daily activities and overall health. However, balance capability often declines with age or due to health conditions such as stroke, increasing fall risk. Falls among older adults are a major public health concern, affecting 14 million older adults annually in the US and directly causing over 40,000 deaths. Timely and accurate assessment of balance impairment is crucial to prevent falls and promote independence. Current assessments rely heavily on subjective therapist evaluations, underscoring the need for objective, quantitative methods. With the growing strain on healthcare systems due to an aging population, continuous at-home balance monitoring is also increasingly important. Additionally, a comprehensive understanding of the motor control mechanisms that deteriorate with aging or disease is crucial for informing therapy methods and technologies. &#13;
&#13;
The goal of this thesis was to develop and validate methods that quantify quiet balance ability and control in unimpaired and impaired human participants. The first part focuses on assessing balance ability, the capacity to maintain upright posture during quiet stance that is currently often quantified by measures of body sway. A review of the strengths and limitations of current clinical and instrumented balance assessments highlighted a critical need for continuous assessment methods that enable objective monitoring of balance function outside of clinical settings. Addressing this need, a novel algorithm that quantifies balance ability using only force and motion sensors embedded in an instrumented cane was developed. Well-established balance measures were successfully estimated in both younger and older adults, demonstrating the proposed method's potential to facilitate continuous balance monitoring in real-world environments.&#13;
&#13;
The next part focuses on identifying balance control strategies. The novel intersection-point analysis, based on foot-force direction and point of application, was used in conjunction with a simple biomechanical model and an optimal controller to quantify balance control. The first study demonstrated that unimpaired quiet balance in a challenging environment was best described by a controller that maintained minimal effort by adjusting relative ankle and hip joint torques. Applying this method to aging populations in a subsequent study revealed that older adults rely more on neural feedback, possibly to compensate for muscle strength deficiency. This study also quantified individual balance controllers, highlighting the method's potential as a diagnostic tool for aging populations. Finally, the model was extended to describe balance control after stroke. The results suggest that the non-paretic limb compensated for the paretic limb's abnormal coordination pattern by strongly favoring neural feedback. As one of the first studies to model quiet balance after stroke, this work lays the foundation for future efforts on studying balance impairments. The contributions of this thesis are instrumental to enhancing at-home monitoring, advancing clinical practices, and reducing fall-related injuries, ultimately improving quality of life for aging and neurologically impaired populations.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Deformable Object Manipulation with a Tactile Reactive Gripper</title>
<link href="https://hdl.handle.net/1721.1/163455" rel="alternate"/>
<author>
<name>Sunil, Neha</name>
</author>
<id>https://hdl.handle.net/1721.1/163455</id>
<updated>2025-10-30T03:21:14Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Deformable Object Manipulation with a Tactile Reactive Gripper
Sunil, Neha
Manipulating deformable objects remains a fundamental challenge in robotics, as techniques developed for rigid objects often fail to generalize. Deformable objects exhibit infinite-dimensional configuration spaces, frequent self-occlusion, and high model uncertainty, making global state estimation and predictive modeling unreliable. To address these challenges, we propose a perception-driven framework that combines global visual understanding with local tactile feedback. Rather than modeling the full configuration of the object, we leverage local constraints, grounded in modular visual and tactile representations, to enable robust, reactive, and generalizable manipulation. The primary contributions of this work include: • Chapter 2: Cable Following. A tactile control strategy for in-hand cable manipulation that decouples contact regulation from object pose control, enabling fast, reactive sliding and closed-loop plug insertion using only local tactile feedback. • Chapter 3: Towel Edge Tracing. An extension of contact-based control to fabric edge following and the learned tactile perception networks to support this capability. • Chapter 4: Visuotactile Grasp Affordance. A grasp affordance model trained in simulation and refined with tactile self-supervision, enabling high-confidence edge grasping on towels. • Chapter 5: Dense Object Correspondence. A confidence-aware dense descriptor representation. Supports correspondence across crumpled and symmetric garments in air and on a table. • Chapter 6: Behavior Architecture and Planning Interfaces. Integration of perception modules into a reactive, confidence-based folding system and an exploration of how dense descriptors can interface with demonstrations, language, and task and motion planning. Collectively, these contributions show that global state estimation and dynamics prediction are not required for reliable deformable manipulation. Instead, semantically meaningful local interactions, guided by modular visual and tactile representations, can drive scalable, long-horizon behaviors across varied objects, configurations, and tasks.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fluid Sealing Challenges in Solid Oxide Electrolysis Cells and Rapid Swap Battery Systems</title>
<link href="https://hdl.handle.net/1721.1/163454" rel="alternate"/>
<author>
<name>Lindberg, Ian G.</name>
</author>
<id>https://hdl.handle.net/1721.1/163454</id>
<updated>2025-10-30T03:24:08Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Fluid Sealing Challenges in Solid Oxide Electrolysis Cells and Rapid Swap Battery Systems
Lindberg, Ian G.
This thesis explores the design and development of several mechanical elements relevant to two technologies Important to a global transition to green energy, hydrogen and electric vehicles. The portion of the thesis relating to hydrogen focuses on preloading mechanisms and high temperature seals, two design spaces crucial to the implementation of solid oxide hydrogen generation. Due to the high operating temperatures (600°C - 800°C), seal materials commonly used in other applications are inadequate and glass or vermiculite based seals must be used. The delicateness of these seals makes them a common failure point, and consistent application of a preloading force is key to mitigating this. The concept of a variable-bypass piston is proposed as a preloading mechanism suitable for the high temperatures present inside solid oxide electrolyzer systems, and the development of seal geometries as well as flow characterization of porous steel wool seals to enable parametric design is documented. As an alternative to current sealing methods, initial development of a composite seal utilizing materials and manufacturing methods originating in the semiconductor industry was also conducted. The final section of the thesis proposes the concept and covers initial testing of fluid transfer through a kinematic coupling, a topic of potential interest for implementing liquid pack cooling in a system of rapidly swappable batteries for electric vehicles.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Enhancing the Performance of Skeletal Muscle Powered&#13;
Biohybrid Robots</title>
<link href="https://hdl.handle.net/1721.1/163453" rel="alternate"/>
<author>
<name>Bawa, Maheera</name>
</author>
<id>https://hdl.handle.net/1721.1/163453</id>
<updated>2025-10-30T03:24:27Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Enhancing the Performance of Skeletal Muscle Powered&#13;
Biohybrid Robots
Bawa, Maheera
Skeletal muscle powers all voluntary motion in many living creatures, enabling behaviors such as walking, jumping, swimming, and flying. The field of biohybrid robotics aims to use biological actuators, such as skeletal muscle, to power adaptable robots that respond to their environment. Previous work in this field has focused on deploying 3D skeletal muscle tissues to power robotic function. In natural systems, muscles can also be organized in 2D formats to power a range of movements such as fish-like swimming and peristaltic pumping. However, long-lasting 2D cultures of skeletal muscle have been precluded by force-generating cells delaminating from their underlying substrate. Building on previous work from our lab demonstrating a method to culture contractile skeletal muscle in 2D formats, this work aims to enhance the performance of these systems by tuning substrate stiffness and topography. We show that optimizing system parameters prolongs actuator lifetime and enhances force by 100x.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development and Implementation of a Smart Factory for Educational Fiber Extrusion Device Production</title>
<link href="https://hdl.handle.net/1721.1/163452" rel="alternate"/>
<author>
<name>Fillon, Marie</name>
</author>
<id>https://hdl.handle.net/1721.1/163452</id>
<updated>2025-10-30T03:24:20Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Development and Implementation of a Smart Factory for Educational Fiber Extrusion Device Production
Fillon, Marie
This thesis presents the development and production of FrED (Fiber Extrusion Device), an educational manufacturing system designed to bridge the gap between theoretical instruction and hands-on practice in process control, computer vision, and smart manufacturing. Building on an existing prototype, this work focused on transitioning FrED from a proof-of-concept into a production-ready system by designing scalable workflows, improving hardware and software integration, and developing tools to ensure traceability and repeatability across builds. A major contribution of this thesis was the enhancement and implementation of a smart factory environment capable of supporting batch production. This included designing and deploying applications using Tulip Interfaces to manage inventory, guide subassembly processes, and monitor production metrics in real time. A modular SKU system and structured bin labeling framework were introduced to reduce errors, maintain version control, and support future growth. Station-specific apps were developed and refined to ensure consistent assembly and simplify onboarding across a rotating team of users. In parallel, this thesis contributed to the evaluation and refinement of a vision-based diameter measurement system using a low-cost USB camera. The system was analyzed under various operating conditions and its limitations under motion and variable lighting were quantified. Multiple image processing strategies were explored and robustness metrics were developed to inform future improvements. To ensure pedagogical relevance, the system was tested in user-facing workshops and public demo sessions. Feedback informed updates to both the assembly process and instructional content. By the end of the development cycle, the system supported the successful production of 35 complete FrED units, establishing a replicable model for small-scale manufacturing. This thesis demonstrates how modular digital infrastructure can enable scalable hardware deployment. It also highlights the practical challenges of transitioning from prototype to production and proposes tools and methods that can support broader adoption of smart manufacturing principles in learning environments.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Analyzing Vibration in Omni-Wheels: A Design of Experiments Approach to Optimizing Omni-Wheel Selection</title>
<link href="https://hdl.handle.net/1721.1/163451" rel="alternate"/>
<author>
<name>Sanghai, Rohan S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163451</id>
<updated>2025-10-30T03:24:06Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Analyzing Vibration in Omni-Wheels: A Design of Experiments Approach to Optimizing Omni-Wheel Selection
Sanghai, Rohan S.
Omni-wheels, known for enabling holonomic motion in robotic systems, often introduce vibration due to their complex geometry and multiple contact points. Unlike caster wheels with established testing standards, omni-wheels lack comprehensive characterization methods. While parallel studies by Ilkbahar [1] and Donnellan [2] explore their rolling resistance and static load capacity, a systematic analysis of vibration characteristics remains absent from the literature. This thesis presents an investigation of the vibration behavior of various omniwheel designs using a Design of Experiments (DOE) approach. A full factorial experimental design was developed, considering factors such as wheel type, rotational speed, applied load, and wheel orientation angle. Individual regression models were developed for each of six wheel types, treating operational parameters as continuous variables. Vibration levels were measured using root mean square (RMS) acceleration, derived from Fast Fourier Transform (FFT) and Power Spectral Density (PSD) analyses of accelerometer data. Results show that rotational speed consistently increased vibration across all wheel designs, while lateral motion (90° angle) consistently reduced vibration compared to forward motion. The effect of applied load varied significantly between wheel designs, with some wheels showing reduced vibration under load while others remained unaffected. Wheels DZ(1) and Vex(5) demonstrated the lowest average vibration levels, though post-test inspection revealed trade-offs with durability, including roller deformation and material degradation. Interaction effects, particularly between angle and speed, were statistically significant for all wheel types, indicating that the benefits of lateral motion are enhanced at higher speeds. This research provides a framework for optimizing omni-wheel selection to minimize vibration by developing wheel-specific predictive models that quantify sensitivities and interaction effects across various designs and conditions, improving system performance and stability. The findings highlight that wheel selection must consider not only vibration performance but also trade-offs with durability and rolling resistance, establishing vibration characteristics as a critical consideration alongside other performance metrics when selecting omni-wheels.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Model-Based Planning and Control Framework for Parkour-Style Legged Locomotion</title>
<link href="https://hdl.handle.net/1721.1/163450" rel="alternate"/>
<author>
<name>Chignoli, Matthew T.</name>
</author>
<id>https://hdl.handle.net/1721.1/163450</id>
<updated>2025-10-30T03:21:19Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">A Model-Based Planning and Control Framework for Parkour-Style Legged Locomotion
Chignoli, Matthew T.
Legged robots have long been envisioned as a means of expanding robotic capabilities beyond structured environments, yet achieving high-agility locomotion remains a fundamental challenge. This thesis presents a model-based framework for parkour-style locomotion, enabling robots to execute highly dynamic maneuvers such as jumps, rolls, and flips with precision and robustness. A key challenge in planning these motions is selecting an appropriate dynamic model that balances computational efficiency with physical accuracy. To address this, a model assessment strategy is introduced to determine the simplest model capable of capturing task-relevant dynamics. Even with well-chosen models, solving long-horizon trajectory optimization problems for dynamic motions is computationally demanding. This thesis introduces graduated optimization techniques, which improve solver efficiency and reliability by generating high-quality initial guesses through progressively refined problem formulations. Additionally, a novel formulation of rigid-body dynamics algorithms for systems with kinematic loops accelerates trajectory optimization and simulation. Finally, two control strategies are proposed to execute planned motions on hardware: a model-based tracking controller for real-time adjustments and an imitation learning policy trained on optimal trajectories to enhance robustness. Extensive experiments on hardware validate the framework, demonstrating the successful execution of complex, high-impact locomotion behaviors. By integrating advanced planning, optimization, and control techniques, this work establishes a foundation for high-agility legged locomotion, pushing beyond conventional automation toward real-world, dynamic robotic movement.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Designing and Optimizing Magnetohydrodynamic Induction Marine Energy Harvester</title>
<link href="https://hdl.handle.net/1721.1/163449" rel="alternate"/>
<author>
<name>Scali, William T.</name>
</author>
<id>https://hdl.handle.net/1721.1/163449</id>
<updated>2025-10-30T03:24:09Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Designing and Optimizing Magnetohydrodynamic Induction Marine Energy Harvester
Scali, William T.
Magnetohydrodynamic (MHD) power generation presents a promising approach for harvesting energy from marine environments, offering a sustainable alternative for powering naval assets and coastal infrastructure. While energy harvesting technologies are widely used in terrestrial and aerial applications, their implementation in marine environments remains limited. This thesis explores the feasibility of an MHD Inductive Marine Energy Harvester, optimizing its design for undersea naval applications to enhance energy efficiency and reduce carbon emissions with minimized construction costs. A theoretical 2D model was developed based on Maxwell’s equations and Fourier analysis to characterize the physics governing MHD power generation in seawater. This model was extended to multiple concentric gaps on one device, refining predictions of power output under varying flow regimes. Numerical simulations using MATLAB enabled the evaluation of key parameters, including fluid conductivity, magnetic field strength, and shroud design, to optimize energy conversion efficiency. Furthermore, geographical and coastal tide analyses were conducted to determine optimal deployment locations, maximizing power extraction from natural marine currents. Economic viability was assessed through a cost-benefit analysis, comparing the energy yield per unit cost of the harvester against existing renewable energy technologies and other maritime power sources. Results indicate that under specific conditions, MHD generators can effectively supplement energy demands, reducing reliance on conventional fuel or other electrical power sources. The findings of this research contribute to the advancement of marine renewable energy technologies, demonstrating the potential of MHD induction-based harvesting as a scalable solution for sustainable power.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Solar-Powered Critical Cooling: A Theoretical Feasibility Study for Human Thermal Regulation</title>
<link href="https://hdl.handle.net/1721.1/163448" rel="alternate"/>
<author>
<name>Hall, Jeff</name>
</author>
<id>https://hdl.handle.net/1721.1/163448</id>
<updated>2025-10-30T03:24:01Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Solar-Powered Critical Cooling: A Theoretical Feasibility Study for Human Thermal Regulation
Hall, Jeff
Over the last 50 years, the leading global environmental hazard has not been hurricanes, lightning, tornadoes, floods, or earthquakes, but extreme heat events. With climate models projecting an increase in the frequency, intensity, and duration of heatwaves in the coming decades this threat to life is expected to only increase. Air conditioning has been demonstrated to reduce mortality during heatwaves yet uses an order of magnitude more energy than necessary to keep a human cool. Using principles of similitude to extrapolate the capability of existing vapor compression equipment, an objective function to maintain energy balance in a human exposed to extreme heat is developed across a design space. The function shows that in a standard forced convection air conditioning system, there no opportunity to provide emergency cooling of a human due to the slow mass flow rate needed to cool air in a single stream. As such, status-quo attempts to cool humans with general-purpose air conditioning will always be an inefficient use of energy. By focusing on keeping people cool, not spaces, we propose three paths forward for critical human cooling that appropriately match the energy needs of humans: radiative cooling, liquid cooling devices, and low-mass flow air conditioning.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Fractured Practices: How Schooling Norms Limit Modeling Practices in Traditional Technical Thermal-Fluids Engineering Courses -- And the Possibilities Emerging through the Cracks</title>
<link href="https://hdl.handle.net/1721.1/163447" rel="alternate"/>
<author>
<name>Huffman, Sandra</name>
</author>
<id>https://hdl.handle.net/1721.1/163447</id>
<updated>2025-10-30T03:21:17Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Fractured Practices: How Schooling Norms Limit Modeling Practices in Traditional Technical Thermal-Fluids Engineering Courses -- And the Possibilities Emerging through the Cracks
Huffman, Sandra
In professional science and engineering contexts, modeling practices are frequent and diverse. To understand, analyze, and communicate, scientists and engineers simplify and distort the complex systems with which they work. This practice is known as modeling. Typically, scientists create models to predict and explain phenomena while engineers develop them to analyze and test systems, make design decisions, and predict the performance of built systems. Models can include verbal (ex. analogy, story), visual (ex. diagrams, graphs, images), and symbolic (ex. equations) representations. When scientists and engineers model, they do so expansively: pulling from different resources, combining modeling strategies, engaging in critique and iteration, and contextualizing their claims in the work of their field. This is not the case for students in technical engineering classes who are attempting to learn these skills. Traditional, lecture-based courses are the norm for introducing technical material to undergraduate engineering students. These courses typically consist of lectures, recitations, problem sets, and exams. In this type of class, students report homework and test problems as having an outsized influence on their learning approach. These problems tend to be narrow and prescribed. Colloquially known as ‘Textbook-Style’ problems, well-defined, single-solution problems are not sucient to prepare students to successfully tackle the ill-defined, multifaceted engineering problems they will face in their careers. These problems do not elicit student engagement in scientific or engineering modeling practices. Instead, they lead to inauthentic, bounded learning where students develop strategies adequate for groups of similar problems, but too narrow for use outside of the classroom. There has been significant research on innovative educational interventions and alternative problem types shown to improve classroom learning. However, educators work within established structures that resist change, leading to the perpetuation of insucient practices. The gap between textbook-style problems and the problems engineers face, therefore, exists not just in the problem type, but in the context surrounding the task. In this work, I describe and characterize the norms and practices of the classroom environment through three qualitative studies, each centered on traditional technical thermal-fluids courses. Specifically, I investigate the ways in which the development of student modeling practices are supported or undermined. I do this, in part, by adapting the theoretical framework of Figured Worlds. Originally developed by Dorothy Holland and later used in Engineering Education research, figured worlds is a situative framework that allows researchers to look at distinct, sometimes contradictory cultural worlds within the same group and activity. In the first study, I look at individual student approaches to classroom tasks in a think-aloud study, comparing their problem solving approaches and analyzing prompt-student interactions. In the second study, I analyze small groups’ modeling practices and how they are limited by the cultural practices of schooling. In the third study, through semi-structured interviews, I document instructor perceptions of their research and teaching, and discuss the misalignments within and between these contexts. Together, these works outline the mechanisms by which school practices can inhibit the development of student modeling capabilities and the role of students and instructors in perpetuating these practices. In describing student and instructor behavior and contextualizing practices that may otherwise be ascribed to misconceptions, carelessness, or ignorance, I hope to build a foundation for future research into pragmatic educational interventions for enhanced learning outcomes.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Behavioral Methods for Next-Generation Shipboard Power System Simulation: Letting SPARCS Fly</title>
<link href="https://hdl.handle.net/1721.1/163446" rel="alternate"/>
<author>
<name>Almquist, Ethan T.</name>
</author>
<id>https://hdl.handle.net/1721.1/163446</id>
<updated>2025-10-30T03:24:12Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Behavioral Methods for Next-Generation Shipboard Power System Simulation: Letting SPARCS Fly
Almquist, Ethan T.
Design requirements on modern naval platforms are increasing the complexity and criticality of onboard electric plants. They form the backbone of warship operational capability and are at the heart of maritime decarbonization. Tasks such as assessing the ship's capacity in a damaged state, optimizing the mission profile of a fleet of vehicles, and evaluating broad design spaces in an efficient manner are increasingly difficult as electric network complexity increases. Traditional modeling techniques are either too computationally expensive, or lack the fidelity necessary to produce meaningful insights into the electric network's operation. Behavioral modeling bridges this gap, but is underdeveloped to support the system architectures of tomorrow's ships. This work details the advancement of behavioral modeling of electrical systems to incorporate hybrid AC/DC and ring bus architectures, the development of parallelization techniques, and SPARCS: a software package offering Shipboard Parallelized Analytics with a Rapid Configuration Simulator.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design for Longevity: Service and System Innovation</title>
<link href="https://hdl.handle.net/1721.1/163445" rel="alternate"/>
<author>
<name>Lee, Sheng-Hung</name>
</author>
<id>https://hdl.handle.net/1721.1/163445</id>
<updated>2025-10-30T03:21:36Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Design for Longevity: Service and System Innovation
Lee, Sheng-Hung
The global demographic shift toward an aging population presents complex social, economic, and systemic challenges, necessitating innovative approaches to service design, systems thinking, and financial planning. This dissertation, Design for Longevity: Service and System Innovation, examines these transformations and proposes strategies to foster a “longevity society”, a new era in society necessitating a fundamental rethinking of age and ageing to effectively harness the opportunities afforded by increased life expectancy (Scott, 2021). This research is built upon five relevant paradigm shifts: 1. from age-based to stage-based mindsets, 2. from product-driven to service-driven solutions, 3. from human-centered to humanity-centered design, 4. from circular to longevity economics, and 5. from an aging society to a longevity society. These shifts redefine the role of designers and researchers in creating adaptive, inclusive, and sustainable systems for the future. This dissertation explores how tangible artifacts, Longevity Planning Blocks (LPBs), can be employed to create effective service encounters. The research questions explore 1. how to use boundary objects (BOs) to uncover and define latent user needs, 2. how to use a mixed-method approach to analyze experiment data, 3. data-driven persona creation, and 4. the design of longevity planning services across financial planning, service innovation, and system thinking. Central to the research is a study of LPBs, BOs designed to facilitate collaborative engagement between a facilitator and 69 Boston-based participants, stratified by age, gender, pre-tax annual income, and assets. LPBs, employed in experiments, help investigate participants’ needs and concerns across various life transitions and stages. These tangible BOs facilitated informal yet insightful discussions, uncovering how individuals navigate ambiguity, make complex decisions, manage their evolving physical, mental, and social health, and perceptions about living solo. Data from in-person longevity planning experiments provided nuanced insights into the interplay of individual, societal, and systemic factors shaping longevity planning services. A mixed-methods approach integrates qualitative and quantitative techniques, including expert and user interviews, co-creation workshops, pre- and post-experiment surveys, hierarchical cluster analysis, K-means clustering for persona development, and causal loop diagrams for longevity planning service system modeling. Constructivist grounded theory and exploratory factor analysis uncover emerging themes and systemic interconnections, emphasizing the importance of adaptive services that align with changing needs and broader social infrastructures. The study introduces the notion of Design for Longevity (D4L), expanding on longevity economics and circular economy principles to address the complexities of extended lifespans. D4L highlights how evolving resources, transformative needs, and systems integrate life stages into the design of products, services, and experiences. This dissertation contributes to service innovation, financial planning, and system design by proposing actionable insights for longevity planning services. It emphasizes multi-stage life planning, intergenerational collaboration, and systemic thinking as foundational to a longevity society. This dissertation contributes a mixed-method approach, offering design practitioners a replicable, data-driven framework for persona creation applicable beyond longevity planning. Concluding with reflections on social infrastructure, community, and culture, the study calls for cross-disciplinary collaboration to address longevity planning challenges. By advancing the understanding of longevity planning and its systemic implications, this work lays a foundation for designing a future where extended lifespans are inclusive and socially engaged.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Integrated Prosthetic Leg Design Frameworks for People with an Above-Knee Amputation</title>
<link href="https://hdl.handle.net/1721.1/163444" rel="alternate"/>
<author>
<name>Petelina, Nina T.</name>
</author>
<id>https://hdl.handle.net/1721.1/163444</id>
<updated>2025-10-30T03:21:22Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Integrated Prosthetic Leg Design Frameworks for People with an Above-Knee Amputation
Petelina, Nina T.
A well-fitting, high-performance prosthesis for people with a lower limb amputation can greatly improve users’ mobility and quality of life. Still, many amputees lack access to high-performance prosthetic components due to the cost and availability of continuous care. This thesis aims to design low-cost, high biomechanical performance above-knee prosthetic leg components (prosthetic foot and knee) that will result in a walking motion likely to be perceived as able-bodied after minimal acclimation time. Above-knee amputees have two common gait deviations from able-bodied and below-knee amputee gait: lack of early stance knee flexion (ESF) and delayed initiation of knee flexion (IOF) during late stance phase. These deviations are likely a result of prioritization of stability at the expense of other functions such as shock absorption and progression through stance. A preliminary perception study was conducted to investigate the acceptable bounds of gait deviation that can be incorporated into a prosthetic leg design without compromising the perception of "typical" walking. Using these results, I created the Hip Trajectory Error (HTE) framework for designing prosthetic feet specifically for people with an above-knee amputation. The HTE framework takes into account the lack of ESF by incorporating the shock absorption function of ESF within the prosthetic foot design. This is achieved by targeting able-bodied hip center motion, which is correlated with sufficient shock absorption during the stance phase. This thesis presents an optimization and performance evaluation process that resulted in a prosthetic foot structure that not only closely replicates able-bodied hip center motion but also could be manufactured for a low cost. An experimental study successfully demonstrated that the Hip Trajectory Error (HTE) framework can be used to predictively design prosthetic feet for aboveknee amputees. HTE-designed prosthetic feet enable comparable biomechanical performance to daily-use tuned and prescribed prosthetic feet within 10-15 minutes of acclimation time and without iterative multi-day fittings. Next, I proposed a method to recommend a damping coefficient for the prosthetic knee to achieve able-bodied peak knee flexion during swing phase. A range of recommended damping coefficients to achieve target peak knee flexion angle in transfemoral amputees was determined using a simple three-step framework. This framework incorporates effects from common transfemoral prosthetic gait deviations, such as slower self-selected walking speeds and delay in initiation of knee flexion during late stance. The calculated range of recommended damping coefficients was experimentally investigated and found to enable a peak knee flexion angle within two standard deviations of able-bodied peak knee flexion angle. Lastly, I created the Full Leg Optimization (FLO) framework to design the prosthetic foot and knee concurrently based on minimal inputs from the user and the prosthetist. The framework anticipates the lack of ESF and delay initiation of late stance knee flexion and uses the HTE framework to predict the orientation and location of the knee mechanism. Using this prediction, the rotational axes of the prosthetic knee can be positioned to start knee flexion at a point in late stance chosen by the prosthetist to provide sufficient stability to the user. A proof-of-concept study demonstrated the accuracy of the prediction for one user after minimal acclimation time, confirming the ability to predictively design prosthetic leg components in tandem. The FLO framework can therefore be used to predictively design a passive prosthetic leg for above-knee amputees while considering common gait deviations due to stability needs. This doctoral work demonstrates that the presented frameworks can be used to quantitatively design prosthetic feet and knees based on the needs of above-knee amputees, which could save fitting time, manufacturing cost, and improve mobility.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multimodal Non-Contact Sensing of Neonatal Vital Signs&#13;
Using Radar and Video</title>
<link href="https://hdl.handle.net/1721.1/163443" rel="alternate"/>
<author>
<name>Chityat, Inbar</name>
</author>
<id>https://hdl.handle.net/1721.1/163443</id>
<updated>2025-10-30T03:24:15Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Multimodal Non-Contact Sensing of Neonatal Vital Signs&#13;
Using Radar and Video
Chityat, Inbar
Preterm neonates represent a vulnerable population which traditional contact-based monitoring devices are not optimized for their small size and complicated physiology. Adhesive sensors and wires can cause infections, discomfort, and impair the delivery of clinical care. Therefore, these most fragile patients could significantly benefit from remote health monitoring. This thesis establishes the foundation for a multimodal device designed for noncontact monitoring of neonates in the Neonatal Intensive Care Unit (NICU) that integrates a video camera and a radar. The device is used to estimate vital signs such as respiratory rate (RR), using both unimodal (solely video or radar) and multimodal fusion approaches that combine data from both sensors. Preliminary testing was conducted on neonatal simulator mannequins, followed by a clinical study at Tufts Medical Center NICU which collected data from 16 neonates so far (with the goal of reaching 20). The collected data was processed, labeled, and organized using image processing techniques and manual review, and then analyzed using a Video Vision Transformer (ViViT) architecture, incorporating early, intermediate, and late fusion strategies. Initial analysis was conducted on the mannequin data and the first neonatal subject. The results show that for estimating RR in neonates, the early fusion approach outperformed the unimodal methods. In movement detection, compared to human labeling, the fusion techniques achieved high accuracy and precision. To conclude, this study demonstrates that multimodal analysis has the potential to outperform unimodal approaches by improving accuracy against gold standard monitoring, particularly in challenging real-life conditions, including motion artifacts and poor lighting. This work represents a step toward more robust, non-invasive monitoring solutions for neonatal care, with implications for broader applications in remote health monitoring.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Incubators for Species which Exhibit Temperature-Dependent Sex&#13;
Determination: Application to Hawksbill Sea Turtles in Rising Ambient Temperatures</title>
<link href="https://hdl.handle.net/1721.1/163442" rel="alternate"/>
<author>
<name>Finlason, Katana R.</name>
</author>
<id>https://hdl.handle.net/1721.1/163442</id>
<updated>2025-10-30T03:24:24Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Incubators for Species which Exhibit Temperature-Dependent Sex&#13;
Determination: Application to Hawksbill Sea Turtles in Rising Ambient Temperatures
Finlason, Katana R.
As global ambient temperatures continue to rise, with the highest recorded annual averages since 1850 being within the last ten years, problems emerge for species exhibiting temperature-dependent sex determination. This is the process by which the sex of an animal’s embryo is determined based on the temperature of environment in which it is incubated, which can result in skewed sex ratios within a population like in the case of the critically endangered Hawksbill Sea Turtles (Eretmochelys imbricata). Reportedly, 85-95% of Hawksbills sampled in the wild are currently female [3]. This sex-imbalance can negatively impact the species’ ability to procreate, leading to the potential for extinction. Currently, no viable, long-term solutions exist to effectively and safely cool sea turtle eggs while still keeping them within their natural habitat. This research proposes the creation of sea turtle egg incubators designed to achieve a temperature range that will produce a higher percentage of male hatchlings to help rectify this imbalance in habitats heavily affected by climate change. These incubators are designed to be affordable, easy to build and, most importantly, safe for the sea turtle eggs. Three-month-long temperature trials for the incubator were conducted in Jamaica with conservationist community partners at Oracabessa Bay Sea Turtle Project. Results showed that this incubator is not only easy to manufacture and use, but that it successfully regulates the temperature range in favor of more male hatchlings, while also increasing the emergence rate of the hatchlings from 70% in natural nests to over 80%. During one of the hottest months in Jamaica, the incubator, deployed without water changes, doubled the predicted percentage of males produced by natural nests. When provided with cool water changes the incubator quintupled this value. Throughout the months of August to October, the incubator achieved a temperature range that is predicted to produce 85-99% male hatchlings, thus counteracting the feminization phenomenon occurring in nature.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Minimal Constraint and Precision Placement in Cyclic Testing of High Life-Cycle Products</title>
<link href="https://hdl.handle.net/1721.1/163441" rel="alternate"/>
<author>
<name>Edington, David J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163441</id>
<updated>2025-10-30T03:24:42Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Minimal Constraint and Precision Placement in Cyclic Testing of High Life-Cycle Products
Edington, David J.
In the electrification of heavy industry, rapid swappable batteries provide an effective means to minimize vehicle downtime and the cost of operation. However, to allow this technology to take hold, further development of electrical contacts that can both pass high amperage and undergo a high cycle life needs to occur. The development of these electrical contacts is a highly experimental process, and thus establishing a method and test equipment to determine the physical and electrical characteristics of these contacts over their lifetime will allow for the accelerated development of these products. This body of work serves as a design guide to establish a physical testing mechanism to assess contact resistance degradation and physical wear over the lifespan of an electric connector. Data will then be collected on initial contact prototypes to characterize their performance. With this data, designs may be iterated and improved upon in pursuit of creating a universal standard for battery swap technology on electric vehicles in heavy industry.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of a Hierarchical Reflexive Control Framework for Autonomous Robotic Manipulation</title>
<link href="https://hdl.handle.net/1721.1/163440" rel="alternate"/>
<author>
<name>SaLoutos, Andrew</name>
</author>
<id>https://hdl.handle.net/1721.1/163440</id>
<updated>2025-10-30T03:21:06Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Development of a Hierarchical Reflexive Control Framework for Autonomous Robotic Manipulation
SaLoutos, Andrew
Within the field of robotic manipulation, much research focus has been placed on improving perception and planning algorithms, assuming that the actions output by these high-level planners will be easily achieved by the robot systems. However, to surpass human manipulation performance, fast and robust execution of manipulation plans is just as critical as improved perception and planning methods. In this thesis, we introduce the last centimeter problem, which states that the most difficult part of grasp execution is when less than a centimeter remains between fingertips and an object, and contact is imminent. To solve this problem, we propose a reflexive control framework, which is a manipulation control architecture that decouples low-level, high-bandwidth behaviors, which we call reflexes, from broad high-level plans. The reflexes are fast, autonomous reactions to local sensing information that are designed to add robustness to high-level manipulation plans while also reducing the necessary complexity of manipulation planning problems. To deploy our reflexes, we design hardware platforms that incorporate high-bandwidth actuation and low-latency tactile sensing, allowing us to maximize the reactive capabilities of the overall manipulation system. We validate our approach through studies on teleoperated grasping and autonomous planar grasping, which show that our reflexive controllers increase manipulation speed and robustness. Then, we perform extensive simulation studies for autonomous grasping in SE(3), conducting experiments with single objects as well as cluttered scenes, using a variety of state-of-the-art grasp planners. Our results show greatly improved grasp robustness with our reflexive controllers, across all object types and grasp planners. Further experiments show that the benefits of our reflexes persist across sets of objects that are larger, heavier, and more slippery, and with increasing magnitudes of errors in the executed grasp poses. While this thesis demonstrates that the reflexive control framework is effective at increasing grasp robustness during picking, our framework is constructed in a way that is amenable to extension to other tasks, like in-hand manipulation or constrained object placement, as well as application to more complex grippers, such as those with three or more dexterous fingers and more diverse sensing.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Distinct roles for energy storage and transmission&#13;
infrastructure in a renewables-based electric power system</title>
<link href="https://hdl.handle.net/1721.1/163439" rel="alternate"/>
<author>
<name>Kim, Beomjun</name>
</author>
<id>https://hdl.handle.net/1721.1/163439</id>
<updated>2025-10-30T03:24:28Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Distinct roles for energy storage and transmission&#13;
infrastructure in a renewables-based electric power system
Kim, Beomjun
Due to the intermittency of renewable resources, achieving a high coverage of renewable generation at low cost is one of the main hurdles to realizing zero-carbon electricity generation. In this study, we analyze the roles of energy storage systems (ESS) and transmission infrastructure in the cost-optimal deployment of a renewable electricity grid in the United States. We find that storage and transmission serve distinctly different functions: transmission is useful for addressing hours-long resource lows, but only plays a supplementary role in mitigating long-duration resource lows. Conversely, storage can handle both short-duration and long-duration resource lows. These different functions are driven in part by the large spatial footprints of the most extreme long duration resource lows. Furthermore, the total cost of renewable energy in the system and the cost-determining technological components in the system are dependent on the renewables penetration toward total demand—known as the energy availability factor (EAF). When the EAF is sufficiently low, the cost of a cost-optimized system is driven solely by generation costs. For low to intermediate EAF, both generation and transmission costs are dominant factors. At high EAF, generation and storage costs become the dominant factors.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wedged Vortex Generator Applications for Marine Vessels</title>
<link href="https://hdl.handle.net/1721.1/163438" rel="alternate"/>
<author>
<name>Kimmeth, Jack</name>
</author>
<id>https://hdl.handle.net/1721.1/163438</id>
<updated>2025-10-30T03:24:25Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Wedged Vortex Generator Applications for Marine Vessels
Kimmeth, Jack
This thesis investigates the effectiveness of vortex generators (VGs) in reducing viscous drag in hydrodynamic applications. Initial experimental and computational fluid dynamics analyses identified wedge-shaped VGs as the optimal design for flow manipulation. Comparative testing of three wedge shaped VG sizes at 1.3 m/s revealed the most effective configuration, which was subsequently evaluated across speeds ranging from 1.0 m/s to 1.6 m/s. The results showed a viscous drag reduction of 7.9% at 1.4 m/s. These findings were extrapolated to a full-scale bulk carrier using appropriate geometric and dynamic scaling factors. Total resistance was partitioned using Holtrop-Mennen approximations, allowing the drag reduction to be realistically applied to operational conditions on a trans-Pacific route. Material and installation cost estimates were also developed. Finally, implications for propulsion efficiency, flow-induced vibrations, and cavitation are discussed, with recommendations for future self-propelled model testing to further explore these effects.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Prosody in Kichwa</title>
<link href="https://hdl.handle.net/1721.1/163437" rel="alternate"/>
<author>
<name>Chango Masaquiza, Soledad</name>
</author>
<id>https://hdl.handle.net/1721.1/163437</id>
<updated>2025-10-30T03:24:10Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Prosody in Kichwa
Chango Masaquiza, Soledad
This thesis investigates the prosodic system of Salasaka Kichwa, focusing on the interaction between pitch, morphosyntactic structure, and word order in both elicited and spontaneous speech. Based on data from ten native speakers of the Salasaka community, the study analyzes approximately 150 utterances using Praat and ToBI-style prosodic annotation. The findings reveal a consistent alignment between the nuclear pitch accent and the leftmost constituent of the verb phrase in neutral declarative sentences, supporting the hypothesis that Salasaka Kichwa exhibits a head-final syntactic structure. This default prosodic alignment is disrupted by the presence of focus-sensitive or interrogative morphemes such as -mi and -chu, which reliably attract the pitch peak regardless of their position in the clause. In ditransitive constructions, pitch prominence consistently targets the dative-marked argument. Accusative-marked objects also receive prominence, but only when modified; in such cases, it is typically the modifying adjective or contrastive element that bears the highest pitch. Overall, the study demonstrates that prosodic prominence in Salasaka Kichwa is not governed by syntactic structure alone. Instead, it emerges from a layered interaction between morphology, information structure, and pragmatic marking offering new insights into how prosody encodes grammatical and communicative functions in underdescribed head-final languages.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Model Predictive Control Approaches for Dynamic Table&#13;
Tennis Swinging</title>
<link href="https://hdl.handle.net/1721.1/163436" rel="alternate"/>
<author>
<name>Nguyen, David H.</name>
</author>
<id>https://hdl.handle.net/1721.1/163436</id>
<updated>2025-10-30T03:24:26Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Model Predictive Control Approaches for Dynamic Table&#13;
Tennis Swinging
Nguyen, David H.
This thesis presents three model predictive control (MPC) formulations for robotic table tennis swinging, addressing the challenge of generating precise, real-time paddle trajectories for dynamic ball interactions. We explore key differences in optimization structure, solver strategy, and real-time implementation, evaluating each approach through hardware experiments that measure strike condition tracking and hit success. The final controller integrates the full task of a table tennis possession by planning the return ball trajectory through the contact dynamics, and generating a swing to achieve it. This controller improves the hit rate of the system from 88.3% to 97.6% and significantly enhances strike condition accuracy and smoothness enabling control over the landing location and spin of the ball.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>On the Certification of Deep Learning-based Dynamical System Identification</title>
<link href="https://hdl.handle.net/1721.1/163435" rel="alternate"/>
<author>
<name>Zhang, Wang</name>
</author>
<id>https://hdl.handle.net/1721.1/163435</id>
<updated>2025-10-30T03:21:03Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">On the Certification of Deep Learning-based Dynamical System Identification
Zhang, Wang
Dynamical system identification, the reconstruction of the system governing equations from observations, has been studied for decades. With the recent emergence of deep learning techniques, neural network-based parameterization enriches this classical field by offering new capabilities in modeling complex systems. While promising advances have been made, these black box models face significant challenges due to their limited interpretability and lack of physical guarantees, raising concerns about their applicability in scenarios where trustworthiness is critical.&#13;
&#13;
In this thesis, we developed a comprehensive framework to analyze, understand and learn dynamical systems. We start with a contrastive learning method to capture system invariants (i.e., conserved quantities) from trajectory observation of dynamical systems. Building on these learned invariants or known priors, we introduce a projection layer for neural networks that guarantees the preservation of physics constraints in the learned dynamics models. This two-step approach significantly improves the trustworthiness and interpretability of the traditional black-box models. On top of this, we extend this methodology to learn physically meaningful embeddings corresponding to inter-system characteristics, enabling zero-shot meta-learning capabilities for dynamical system models. Finally, we reduce the bias gap in the classical neural network-based aleatoric uncertainty estimators. We identify overestimation issues in existing variance attenuation methods and propose a novel denoising-based approach that provides more accurate estimates of data uncertainty. This method not only applies to regression tasks but also extends to dynamical system observations.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Modeling the Impact of Helicopter Vibrations on the Musculoskeletal Health of US Army Blackhawk Helicopter Pilots</title>
<link href="https://hdl.handle.net/1721.1/163434" rel="alternate"/>
<author>
<name>Johnston, Julie E.</name>
</author>
<id>https://hdl.handle.net/1721.1/163434</id>
<updated>2025-10-30T03:24:02Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Modeling the Impact of Helicopter Vibrations on the Musculoskeletal Health of US Army Blackhawk Helicopter Pilots
Johnston, Julie E.
The UH-60, used for troop transport, MEDVAC, and mission control, has evolved over the last 45 years from the Alpha Model to the Lima and Mike models that are currently utilized. Previous studies investigated the impact of Whole-Body Vibrations (WBV) on aviators and the resulting musculoskeletal injury, but none have investigated the efficacy of the Mike model’s Active Vibration Control System (AVCS) on reducing the impact of helicopter vibrations on musculoskeletal health.&#13;
Computational analyses of a biomechanical model using OpenSim and motion capture at varying levels of vibration was conducted. This quantifies the response of the spine and the surrounding muscles when vibratory loads are applied while positioned to manipulate the flight controls. A musculoskeletal model was developed to represent the aviator in the seated posture required to effectively manipulate the flight controls. To develop the model, the team recorded motion capture data with a pilot in a pilot test for concept validation. This data was then processed and input in the OpenSim inverse kinematics tool to determine joint angle and to demonstrate the muscle-tendon length of several muscles in the back. Unlike the initial predictions, the muscles in the right side of the back were not consistently longer than those of the left side. &#13;
A survey was also developed that builds upon previous efforts, seeking to understand the aviator’s perspective on musculoskeletal injury and prevention, with a focus on the back. Aviators are asked to describe the cause of their injury, methods of injury prevention, and recovery techniques encompassing numerous subpopulations of flight experience: Lima-majority, Mike-only, Mike-majority, and an even mixture of L/M. The data attempts to characterize the impact of the AVCS on aviator spine health. The AVCS should decrease the rate of injury by reducing the vibratory loads experienced by the aviator. This survey is unique to previous questionnaires as it focuses on the user’s perspective of differences between the two models, and the injury or pain felt by each service member.&#13;
While it was expected to see a trend of reduced injury occurrence amongst the Mike-only aviators versus those with Lima-majority flight hours, this was not the case. Injury prevalence was consistent across most populations, indicating the potential inefficacy of the AVCS. Analysis of open-ended responses, particularly from the hybrid group, provide some context for the perceived impacts of using the AVCS. Some population demographics were not represented in this survey due to the nature of the unit being surveyed, which may impact the validity of some results.&#13;
By quantifying the perceived efficacy of the AVCS as it relates to chronic musculoskeletal injury using a survey of pilot experience factors (flight hours, airframes, operating theatres, etc.), and by representing the maladaptive posture of the pilots with a computational simulation based on experimental pilot data; a full picture is developed of the risk of issue related to the near and long-term health of US Army Aviators. The aim is to expand the overall understanding of how vibration is impacting the musculoskeletal health of aviators and their perceived impact on lifelong health from the profession. The ultimate goal is to aid in the design of additional countermeasures to improve aviator spine health and to serve as a platform for optimization of systems like AVCS.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design Theories for Compact, Low-energy, Clog-resistant Drip Irrigation Emitters</title>
<link href="https://hdl.handle.net/1721.1/163433" rel="alternate"/>
<author>
<name>Ghodgaonkar, Aditya</name>
</author>
<id>https://hdl.handle.net/1721.1/163433</id>
<updated>2025-10-30T03:21:11Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Design Theories for Compact, Low-energy, Clog-resistant Drip Irrigation Emitters
Ghodgaonkar, Aditya
This thesis presents the derivation, experimental validation, and demonstration of new design theories for compact, low-pressure, clog-resistant drip emitters that can make drip irrigation affordable, reliable, and easier for farmers to adopt. Broad adoption of water-efficient irrigation methods such as drip irrigation is imperative to sustainably meet projected global food demand against the backdrop of diminishing freshwater resources, constrained arable land, and climate change. In drip irrigation systems, emitters are passive flow-regulating devices that are inserted into the drip tube to align with every plant. They are designed to provide a constant flow rate once they are pressurized to at least their activation pressure, thus ensuring uniform, localized irrigation of plants. However, conventional emitters directly contribute to three barriers that have limited drip irrigation adoption – high raw material-driven equipment costs, high pumping power costs associated with pressurizing all emitters in the field to their activation pressure, and gradual loss of reliability due to clogging. Compact, low-pressure, clog-resistant emitters can address these challenges, but to design them, we must model and tune their operating physics, which is centered around two complex features – a millimeter-scale tortuous passage called the labyrinth, and fluid-structure interaction (FSI) involving a flexible silicone rubber diaphragm and a micro-duct. This makes conventional design approaches relying on high-fidelity simulation software or empirical trial-and-error too expensive and time-consuming to use for the development of compact, low-pressure, clog-resistant emitters on competitive industrial timelines. This thesis addresses these challenges through three contributions. &#13;
&#13;
The first contribution presents an empirically derived hydraulic model of emitter labyrinths, which are typically the most volume-intensive feature of emitters. The model relates labyrinth flow rate to select material volume agnostic parameters, allowing designers to create compact labyrinths with desired hydraulic performance. The compact labyrinths can enable up to 10% reduction in the raw material-driven cost of drip equipment. &#13;
&#13;
The second contribution presents a 1-dimensional model of the FSI in emitters that can predict their flow rate-pressure performance in 2-3 minutes and within 8-14% error, cutting down on design cycle times by orders of magnitude. This facilitated the rapid synthesis of low-pressure emitter designs having 50-60% less activation pressure than conventional emitters, cutting pumping power costs by an estimated 18-23%. &#13;
&#13;
Together, the first two contributions can enable an estimated 18% reduction in the lifetime costs of drip irrigation, but long-term adoption requires that the emitters be clog-resistant and compatible with the current maintenance practices of farmers. To that end, the third contribution presents an experimental investigation of clogging in low-pressure emitters. The results of the investigation directly correlated the geometry of emitter hydraulic features to the critical particle size that would clog them. As a result, compact, low-pressure emitters could be designed to be compatible with the same filters and maintenance practices as current state-of-the-art products that have higher activation pressures. This was confirmed by field testing the compact, low-pressure, clog-resistant (MIT) emitters alongside commercial reference designs with their prescribed filters for nearly 1200 hours. At the end of the field test, the MIT emitters still held 90-94% of their initial flow rate, putting them on par with or better than the reference products in terms of irrigation reliability. The collective contributions of this thesis present the knowledge needed to design emitters that can make drip irrigation more affordable to adopt by farmers and demonstrate that substantial capital and operating cost reductions can be realized without sacrificing product reliability or requiring expensive changes to current farmer maintenance practices.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Hydrodynamic Behavior of Pop-Up Satellite Archival Tags (PSAT) Subject to Vortices</title>
<link href="https://hdl.handle.net/1721.1/163432" rel="alternate"/>
<author>
<name>Hoo, Stephanie</name>
</author>
<id>https://hdl.handle.net/1721.1/163432</id>
<updated>2025-10-30T03:24:13Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Hydrodynamic Behavior of Pop-Up Satellite Archival Tags (PSAT) Subject to Vortices
Hoo, Stephanie
Pop-up Satellite Archival Tags (PSATs) are a combination of satellite and archival tags used by marine biologists to collect large scale movement and behavioral data of large pelagic life for up to two years [1]. However, current commercial PSATs have an unusually high failure rate when tagged on tuna and cost upwards of $4000, making it both difficult and expensive to collect data [14]. Upon investigation, the top two failure modes of tuna-affixed PSATs have been identified as drag from movement/tissue healing and pressure cycling [14]. Current commercial PSAT manufacturers do not account for the vortices shed by fish when testing their designs— a large oversight that could account for their high failure rate [15]. The work herein determined the effects of vortex shedding on PSAT hydrodynamic behavior, used these results to inform the design of novel PSAT body shapes, and conducted a head-to-head comparison of these designs with existing commercial PSATs.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Combating Corrosion and Monitoring Microgrids on Coast Guard Patrol Boats</title>
<link href="https://hdl.handle.net/1721.1/163431" rel="alternate"/>
<author>
<name>Buchanan, Maxwell Calvin</name>
</author>
<id>https://hdl.handle.net/1721.1/163431</id>
<updated>2025-10-30T03:24:00Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Combating Corrosion and Monitoring Microgrids on Coast Guard Patrol Boats
Buchanan, Maxwell Calvin
Marine corrosion presents a persistent threat to the reliable operation of U.S. Coast Guard Fast Response Cutters (FRCs). This thesis investigates hybrid cathodic protection strategies combining impressed current cathodic protection (ICCP) systems and sacrificial zinc anodes to combat corrosion on such vessels. Observing over 550 cumulative months of ICCP system data across 46 FRCs, this thesis identifies operational trends, failure modes, and unique regional behaviors. To validate observed patterns and explore failure scenarios, the study implements finite element modeling using COMSOL Multiphysics. These simulations replicate normal operation, reference electrode failure, propeller passivation, localized zinc loss, and hull coating failure for both a generic 35m hull and the FRC hull. These models emphasize how system behavior responds to material variations, temperature, and system health, offering a diagnostic framework for optimizing ICCP configurations. Field and laboratory experiments further ground the computational findings. These include shipboard hull potential surveys and analysis of zinc anode wastage across multiple cutters. Controlled experiments on nickel aluminum bronze (NAB) passivation using miniaturized ICCP test systems are explored for further study. Initial results show variation in zinc consumption and corrosion behavior depending on ICCP setpoints, with higher protection levels (-1050 mV) often correlating with reduced zinc depletion. The thesis also explores energy diagnostics onboard FRCs via non-intrusive load monitoring (NILM). A case study on the USCGC WILLIAM CHADWICK describes monitoring auxiliary machinery loads through NILM signatures and suggests expansion to critical panels and DC systems. By integrating fleet data, physical experimentation, and simulation, this thesis advances future efforts in patrol boat corrosion monitoring, ICCP optimization, and resilient microgrid management.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Incorporating High-Resolution Tactile Perception for Performative and Generalized Robotic Manipulation Through Compliance Estimation and Hardware Design</title>
<link href="https://hdl.handle.net/1721.1/163430" rel="alternate"/>
<author>
<name>Burgess, Michael</name>
</author>
<id>https://hdl.handle.net/1721.1/163430</id>
<updated>2025-10-30T03:24:22Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Incorporating High-Resolution Tactile Perception for Performative and Generalized Robotic Manipulation Through Compliance Estimation and Hardware Design
Burgess, Michael
In robotics, replicating the natural proficiency with which humans perform manipulation tasks has proven challenging. Modern control schemes are predominantly learning-based and thus depend heavily on data collected via teleoperated demonstrations. Humans rely on our tactile perception to perform contact-rich and dynamic manipulation tasks. By more seamlessly incorporating high-resolution tactile sensing and haptic feedback into teleoperation interfaces, we can work to create stronger demonstration data to support the development of more effective learned control policies. In this thesis, we present two contributions toward this goal. First, we develop an algorithm to estimate the compliance of grasped objects in real-time from tactile images to provide haptic feedback to remote users. This algorithm combines both analytical and learning-based approaches to better generalize across both object shapes and materials. Second, we create a 1-DoF robotic gripper design with integrated tactile sensing. Inspired by the principle of self-similarity, this gripper is designed to better conform to complex object geometries than traditional designs and more securely grasp objects of many shapes and sizes. Together, these contributions can be utilized to create robust, tactile-aware teleoperation platforms. These platforms would facilitate more effective data collection and thereby promote the development of more performative autonomous action in generalized robotic manipulation scenarios.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tailoring Complexity of Model-Based Controllers for Legged Robots</title>
<link href="https://hdl.handle.net/1721.1/163429" rel="alternate"/>
<author>
<name>Khazoom, Charles</name>
</author>
<id>https://hdl.handle.net/1721.1/163429</id>
<updated>2025-10-30T03:21:00Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Tailoring Complexity of Model-Based Controllers for Legged Robots
Khazoom, Charles
Humanoid robots promise human-like mobility, but must manage complex and often conflicting control objectives. While model-based controllers can address these challenges using online optimization, they have high computational demands. Model predictive control (MPC) provides closed-loop stability with online trajectory optimization, but achieving real-time rates is difficult for high-dimensional systems. To mitigate this limitation, most MPC implementations rely on reduced-order models (ROMs) that simplify planning but fail to capture whole-body constraints like joint limits and self-collisions. Reactive whole-body controllers (WBCs) partially address this limitation by projecting ROM trajectories onto some wholebody constraints, but these are restricted to acceleration-level constraints like friction cones and torque limits. This thesis advances humanoid planning and control through a renewed focus on model fidelity, solution accuracy ans solve times with three key contributions. First, we propose the CBF-WBC, which augments reactive WBCs with position constraints using control barrier functions (CBFs), enabling the MIT Humanoid to avoid selfcollisions with minimal computational overhead. As a result, the robot can reactively deviate from infeasible trajectories from a reduced-order MPC. Despite fast solve times below 100 microseconds, conflicts can arise between the reduced-order MPC and the CBF-WBC. To address this, we enable real-time whole-body MPC using the alternating direction method of multipliers (ADMM) to provide low-accuracy solutions at high feedback rates. The controller is reliably deployed on hardware and enables the MIT Humanoid to walk robustly on rough terrains and plan complex crossed-leg and arm motions that enhance stability when recovering from significant disturbances. While low-accuracy solutions often suffice for real-time control, we found that higher accuracy could still improve closed-loop performance if computational speed allows. Building on this insight, we propose a framework to simultaneously optimize solution accuracy and model complexity to maximize closed-loop performance. Instead of planning with a single model that is too complex or too simple, solve times can be reduced by planning over a sequence of models of reducing complexity. We extract ROMs from whole-body dynamics equations and optimize their horizons, discretization timesteps and solution accuracy using blackbox optimization. The optimizer can sacrifice model complexity for additional ADMM iterations, reducing falls by nine-fold and enabling a 2 m/s walking speed on hardware.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Net Climate Impact of AI: Balancing Current Costs with Future Climate Benefits</title>
<link href="https://hdl.handle.net/1721.1/163428" rel="alternate"/>
<author>
<name>Turliuk, Jennifer</name>
</author>
<id>https://hdl.handle.net/1721.1/163428</id>
<updated>2025-10-30T03:23:54Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">The Net Climate Impact of AI: Balancing Current Costs with Future Climate Benefits
Turliuk, Jennifer
What is the net impact of artificial intelligence on climate change? Existing studies focus on AI's footprint, but few analyze AI's trade-offs. This paper develops a framework to quantify both the Greenhouse Gas (GHG) emissions and the climate change costs and benefits of AI systems, addressing the time value of carbon and the installed base of existing AI infrastructure. We examine the energy demands of AI, which are growing rapidly and threatening companies' net-zero commitments, while also analyzing AI's potential to enable emissions reductions through applications such as optimized energy systems, demand response, grid management, and electrification acceleration. This research introduces the Net Climate Impact Score (NCIS) of AI, a novel equation to calculate the net climate impact of AI technologies that considers both immediate emissions and potential future benefits, and provides a methodology for assessing AI projects holistically. We demonstrate that while current AI applications are predominantly emissions-intensive, strategic deployment focused on energy system transformation could potentially deliver net climate benefits within specific time frames and applications. However, improvements in energy efficiency and emissions reductions resulting from AI are, absent climate policy, likely to generate both direct and indirect rebound effects that could undermine the emissions reductions and reduce the climate benefits of AI. The research concludes with policy and industry recommendations that propose technological pathways that could maximize AI's positive impact while minimizing its environmental footprint.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Wide Range Switched Mode RF Power Amplifiers and&#13;
their applications</title>
<link href="https://hdl.handle.net/1721.1/163427" rel="alternate"/>
<author>
<name>Pressel, Adam Jay</name>
</author>
<id>https://hdl.handle.net/1721.1/163427</id>
<updated>2025-10-30T03:24:16Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Wide Range Switched Mode RF Power Amplifiers and&#13;
their applications
Pressel, Adam Jay
Switched-mode power amplifiers (SMPAs) are desired that can work across a wide range of power levels and load impedances with fast response speed while maintaining high efficiency. Such designs would be valuable for many applications including plasma generation and wireless power transfer. We introduce a new wide-range SMPA architecture that provides direct output voltage modulation, enabling it to modulate output power and compensate for resistive load variations. Dynamic frequency modulation is leveraged to address reactive load variations. The new architecture enables all the semiconductor switches to maintain zero-voltage switching across all operating conditions. Experimental results shows that the wide-range half bridge power amplifier was able to deliver a wide power range of 25 W - 95 W power range across each individual resistive load in the range of 5 Ω - 20 Ω with up to j15 Ω reactance. The maximum dc-ac efficiency is 86 with 20 Ω load and 110.5 W load power.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tension-Leg Platform for Offshore Diffusor-AugmentedHydrokinetic Turbine</title>
<link href="https://hdl.handle.net/1721.1/163426" rel="alternate"/>
<author>
<name>Mannier, Robert B.</name>
</author>
<id>https://hdl.handle.net/1721.1/163426</id>
<updated>2025-10-30T03:24:05Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Tension-Leg Platform for Offshore Diffusor-AugmentedHydrokinetic Turbine
Mannier, Robert B.
Harnessing marine energy offers significant potential for advancing clean and sustainable power generation. This thesis focuses on the design and optimization of a diffuser-augmented hydrokinetic turbine, supported by a tension-leg platform, to harness ocean and tidal currents for renewable energy production. By incorporating diffuser technology, the turbine’s efficiency is enhanced, increasing the coefficient of power and enabling effective energy capture even in environments with lower current speeds.&#13;
The research involves 2D and 2D axisymmetric modeling of the diffuser and turbine using Actuator Disk Theory (ADT), with tools such as Rhino and Star CCM+. Mounted on a floating tension-leg platform anchored to the seabed, the turbine is designed to exceed the Betz limit, maximizing power output and advancing offshore energy harvesting capabilities.&#13;
This thesis is solely focused on the design and optimization of the hydrokinetic turbine, providing an in-depth analysis of diffuser performance. The findings contribute to the development&#13;
of marine renewable energy technologies, promoting sustainable and efficient power generation from ocean and tidal currents.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Optimized Sustainable Hydrogen Generation from Liquid Metal Activated Aluminum-Water Reactions</title>
<link href="https://hdl.handle.net/1721.1/163425" rel="alternate"/>
<author>
<name>Kombargi, Aly</name>
</author>
<id>https://hdl.handle.net/1721.1/163425</id>
<updated>2025-10-30T03:21:39Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Optimized Sustainable Hydrogen Generation from Liquid Metal Activated Aluminum-Water Reactions
Kombargi, Aly
This study presents a sustainable and cost-effective method for hydrogen generation using aluminum waste, addressing both energy and environmental challenges. Activated aluminum reacts with water to produce hydrogen, heat, and aluminum oxyhydroxide (boehmite), a commercially valuable byproduct. As a safe, efficient, and cost-effective energy carrier with an energy density exceeding 20 kWh/L (8 kWh/kg), aluminum enables on-demand hydrogen production for diverse applications, including maritime transport and off-grid power systems. This research optimizes reaction kinetics to enhance hydrogen yield and rate while minimizing costs and carbon emissions.&#13;
&#13;
Activation involves coating aluminum with a gallium-indium eutectic (eGaIn) liquid metal, which disrupts the oxide layer and enables spontaneous reaction in aqueous environments. The study investigates seawater as an ionic medium for eGaIn eutectic agglomeration and reuse. However, chlorine binding slows the reaction, which was countered using high-temperature operation and catalytic enhancement. Adding 0.02 M imidazole accelerated the reaction 60-fold, enabled 92% eutectic recovery, and achieved 99% of the theoretical hydrogen yield.&#13;
&#13;
Environmental conditions significantly influence reaction efficiency. Increasing seawater temperature from 20°C to 90°C enhanced reaction rates 44-fold, aligning with Arrhenius Law. Isochoric reactions at high pressure were tested to simulate deep-sea vehicle environments using onboard hydrogen reactors fueled by aluminum and surrounding seawater. Results showed a 33% yield increase at 6 MPa (586 m depth) compared to atmospheric pressure, primarily due to surface tension effects that reduce hydrogen bubble size, improving aluminum-water contact at higher pressures.&#13;
&#13;
A life cycle and cost analysis identified an optimized production scenario with a carbon footprint of 1.45 kgCO2eq/kg H2, meeting green hydrogen standards. Major contributors include recycled aluminum use and processing, and the eGaIn alloy; but eutectic recovery and thermal energy reuse further reduce emissions. Using scrap aluminum and recovering byproducts, hydrogen production costs are estimated at $9.2/kg. Additionally, reselling boehmite (market price $2.5/kg) could generate revenue 5.6 times greater than input costs, significantly improving economic viability.&#13;
&#13;
To demonstrate scalability, a modular hydrogen reactor was developed and directly integrated with a commercial generator, reliably producing 400W of power from on-demand, 99% purity lab-tested hydrogen. The envisioned application is a fully integrated aluminum recycling system that utilizes aluminum waste and seawater to generate hydrogen, thermal energy, and boehmite. This approach advances clean energy technology by providing a scalable and economically viable hydrogen production pathway.&#13;
&#13;
Beyond its direct application in underwater technologies, this optimized reaction can support energy-intensive operations such as heating, desalination, transportation, industrial hydrogen production for refining and fertilizer synthesis, stationary energy systems for off-grid power, and renewable energy storage. Its versatility strengthens energy security and decarbonization efforts while offering a cost-competitive alternative to conventional fuels, positioning it as a key enabler of a sustainable energy future.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Essays in Venture Capital and Corporate Finance</title>
<link href="https://hdl.handle.net/1721.1/163424" rel="alternate"/>
<author>
<name>Paine, Fiona</name>
</author>
<id>https://hdl.handle.net/1721.1/163424</id>
<updated>2025-10-30T03:21:25Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Essays in Venture Capital and Corporate Finance
Paine, Fiona
This thesis is three chapters. In the first chapter, I study the impact of restricting foreign venture capital investments for national security reasons. Countries have increasingly been using economic policies to further geopolitical and national security goals. Thus far, economists have focused on studying tariffs and subsidies despite a broader range of economic tools actually being implemented. How costly are these other policies and what are their effects on capital markets, investment, and the economy more broadly? In this paper, I examine a 2018 U.S. law (FIRRMA), which expanded the government’s ability to review and block transactions on national security grounds to include venture capital (VC) investments by foreign investors. I use the passing of FIRRMA, its differential impact on specific VC industries, and the role of Chinese investors in U.S. venture capital to study whether foreign investment screening impacts capital supply. I find that FIRRMA had a negative effect on capital supply in impacted industries due to two factors: 1) the specialization of VC investing (such that the substitution of outside capital into impacted industries is low) and 2) networks in VC investing (there are spillovers to domestic syndication partners in impacted industries). I further find that the change in capital supply is costly, leading to lower innovation by startups. I introduce a novel way of measuring innovation early in the life of a startup using text from startup websites. I use this measure to show there is a selection effect where VCs give first round funding to less innovative startups after FIRRMA. Finally, in a case study of the biotechnology industry, I show that impacted startups suspend drug projects at higher rates, and in particular their risky projects. In the second chapter, joint with Johnathan Jensen, we study municipal cyber risk. Cyber attacks are estimated to cost billions of dollars per year. However, cyber risk is hard to study since companies rarely disclose hacks and don’t share information on cyber security investment. This paper takes a novel approach by looking at municipal hacking. We use a dataset of municipal ransomware attacks merged with hand collected IT investment data and municipal bond data. We find that lower IT investment predicts hacking. Furthermore, following a ransomware attack, municipal bond yields fall by 13 basis points and IT investment as a share of total town expenditure increases by 23 basis points. We investigate potential channels leading to decreased yields post hacking. We find evidence that being hacked reduces cyber risk by disciplining municipalities to move closer to the optimal level of IT spending. The third chapter investigates the impact of firm data collection and analysis of collected data on the riskiness of firm cash flows. I use a scraped data set of the third party resources loaded on firms’ websites as a measure of firm data collection and analysis practices. I find that firm u se of less effective web analytics is as sociated with an increase in the variance of sales, inventory, and both fixed and variable costs. This effect is de spite a lack of change in the level of these variables. Looking at the effect of treatment on the treated, there i s higher profit and sales variance during times of higher uncertainty. I use differences in web analytics technology and a change in their relative effectiveness as my identification strategy. As a case study of a large negative demand shock, I look at differences in fi rm reactions to COVID-19 based on their web analytics usage.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Coevolution of Small Business Strategy and Regulation: A Mixed-Methods Study of United States Craft Breweries</title>
<link href="https://hdl.handle.net/1721.1/163423" rel="alternate"/>
<author>
<name>Rixey V, Eppa</name>
</author>
<id>https://hdl.handle.net/1721.1/163423</id>
<updated>2025-10-30T03:21:20Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Coevolution of Small Business Strategy and Regulation: A Mixed-Methods Study of United States Craft Breweries
Rixey V, Eppa
This dissertation asks how do small firms overcome regulatory constraints despite powerful opposition? Significant research has documented the nonmarket strategies of large, multinational firms seeking to benefit from and capture regulatory systems. However, despite the historically important role of small and medium-sized enterprises (SMEs) in the economic and civic structures of the US, there is much we do not know about whether and how they attempt to exert their own influence in regulatory environments. To explore this, the US beer industry was selected as a strategic research site where SMEs have had a range of successes and failures in developing policy influence. In the late 1970s, the US beer industry rapidly consolidated to less than 100 breweries, but today, with the rise of small, craft breweries, there are over 9,000 breweries in the US. Over 7,000 of these focus on direct-to-consumer (DTC) sales, which were explicitly or practically illegal in all 50 states in 1980. How did this market and regulatory transformation take place and why did some states significantly change their policies to support small brewers while others did not? Two studies were conducted to explore this, an in-depth qualitative study of a single state and a mixed-methods comparative study of six states. The single state was selected for variation in policy outcomes over time and at local levels. Through interviews and archival research, it was revealed that craft breweries engaged in a bottoms-up approach, through which individual firms venue shift downwards, from state to local regulators, to successfully ease state-level constraints. In local public hearings, individual entrepreneurs blended local corporate social responsibility (CSR) with an experimental approach to corporate political activity (CPA) that motivated city-based regulators to challenge state-level restrictions on DTC business models. To understand how this process of developing policy influence unfolds in the absence of local regulators, the national trade associations in the beer industry were analyzed and six states where the state has near exclusive control over alcohol regulations were selected for further analysis. Controlling for a range of factors through a cross-sectional database led to a geographically proximate sample of six comparable states with wide variation in the favorability of policies and the number of breweries per capita. A unique dataset of over 5,000 legislative updates on proposed and enacted federal and state policy changes was supplemented with archival and interview data to assess policy influence. The conventional approach described in the literature, collective action via a trade association, was important but often insufficient. Each state had a functioning trade association representing most craft breweries, but sustained policy influence was observed only in states where full-time leaders of these associations understood the political landscape and developed policy partnerships to tilt the odds in their favor. Policy partnerships entailed legislation alleviating regulatory constraints while also including new provisions that ensured long-term alignment among the partners. Taken together, these studies reveal the vital importance of collective action extending beyond the focal industry for SMEs to develop policy influence at the local or state level.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>On the Application of an Output-based Adaptive, Higher-order Finite Element Method to Sonic Boom Propagation</title>
<link href="https://hdl.handle.net/1721.1/163422" rel="alternate"/>
<author>
<name>Trono Figueras, Renato</name>
</author>
<id>https://hdl.handle.net/1721.1/163422</id>
<updated>2025-10-30T03:23:48Z</updated>
<published>2024-09-01T00:00:00Z</published>
<summary type="text">On the Application of an Output-based Adaptive, Higher-order Finite Element Method to Sonic Boom Propagation
Trono Figueras, Renato
The reduction of sonic boom loudness to within acceptable limits is a crucial factor for the viability of supersonic aircraft. This thesis presents a computational framework for simulating sonic boom propagation using an output-based adaptive, higher-order finite element method. The research employs the Variational Multiscale with Discontinuous Subscales (VMSD) method, integrating Continuous Galerkin (CG) and Discontinuous Galerkin (DG) features, referred to as VMSD-BR2. This approach leverages static condensation to manage computational cost while utilizing DG stabilization techniques for enhanced stability and adjoint consistency. A key component of this work is the application of the dual weighted residual (DWR) method for output error estimation, which in turns drives the mesh optimization process. The method’s efficacy is validated using smooth solutions for the viscous Burgers equation and the adjoint PDE for a volume output functional. Additionally, artificial viscosity is incorporated via a shock sensor PDE approach to handle shock presence, with necessary corrections applied to the DWR error estimate. The VMSD-BR2 method is applied then to a real-world scenario solving the augmented Burgers equation, which models the propagation of sonic booms. The results include the pressure perturbation field, adapted meshes, ground-level B-SEL filtered pressure, and perceived loudness at ground, demonstrating the method’s practical application.
</summary>
<dc:date>2024-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>C. elegans as a Platform for Multimodal Neural Data Integration</title>
<link href="https://hdl.handle.net/1721.1/163421" rel="alternate"/>
<author>
<name>Simeon, Quilee</name>
</author>
<id>https://hdl.handle.net/1721.1/163421</id>
<updated>2025-10-30T03:24:08Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">C. elegans as a Platform for Multimodal Neural Data Integration
Simeon, Quilee
Systems neuroscience has traditionally been fragmented into investigations at discrete levels of organization, creating methodological and conceptual gaps that hinder unified understanding of neural function. This thesis examines the nematode Caenorhabditis elegans as a platform for integrating diverse neural data modalities, offering a pathway to bridge these gaps. The hermaphrodite C. elegans, with its completely mapped connectome, optical transparency, genetic tractability, and stereotyped nervous system of only 302 neurons, presents an opportunity for comprehensive measurements across multiple dimensions of neural function. The review is organized around three fundamental neural data modalities accessible in C. elegans: (1) molecular genetic profiles, (2) network connectivity, and (3) neural activity dynamics. Historically studied in isolation, these complementary data types are increasingly being bridged through technological and computational innovations. We examine experimental advances enabling whole-nervous-system measurements of these modalities, as well as data standardization efforts and computational frameworks for cross-modal integration. While understanding the relationship between neural activity and behavior remains a fundamental goal of systems neuroscience, this thesis focuses on neural data acquisition and integration rather than behavioral analysis, which has been extensively covered elsewhere.1 We conclude with some original proposals to overcome current limitations in multimodal data acquisition and synthesis, and suggest future directions toward a holistic understanding of how molecular components, network connectivity, and cellular physiology collectively give rise to neural function in C. elegans. These integrative approaches establish a roadmap that may eventually scale to more complex nervous systems and advance our understanding of neural computation across species.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Nickel Short: Rethinking Element Scarcity in Pursuit of a Fusion-Powered World</title>
<link href="https://hdl.handle.net/1721.1/163420" rel="alternate"/>
<author>
<name>Sutcliffe, Douglas</name>
</author>
<id>https://hdl.handle.net/1721.1/163420</id>
<updated>2025-10-30T03:24:04Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">A Nickel Short: Rethinking Element Scarcity in Pursuit of a Fusion-Powered World
Sutcliffe, Douglas
Fusion energy presents a promising solution for current global decarbonization goals. This thesis presents an adaptable model for evaluating mineral sufficiency in the global deployment of fusion power. Using the ARC Magnetic Confinement (MC) Deuterium-Tritium (D-T) fusion concept as a framework, this research integrates mineral usage estimates from the International Energy Agency (IEA) with MIT Energy Initiative’s (MITEI) energy production forecasts by generation technology. Using MITEI’s $2,800/kW cost scenario for fusion power generation, the model situates the demand for fusion-critical minerals within the broader context of growing mineral needs driven by the clean energy transition, and offers specific, quantitative insights into mineral sufficiency risks. The study finds that beryllium will face significant shortages solely due to fusion demand, with resource exhaustion projected to occur within 40 years. When accounting for additional demands from Electric Vehicles (EVs), battery storage, and transmission infrastructure, chromium and nickel are projected to exhaust economically extractable reserves within 21 to 35 years at current prices. The research further reveals that for nine of the thirty elements evaluated, over 50% of production is concentrated in a single country, and for half of the minerals China is the largest producer, introducing geopolitical risks. Notably, at just 13 kg per reactor, the demand for Rare Earth Elements (REEs) is not exposed to a significant risk, even without the top producing country. The research also surfaces current reactor designs and strategies which could help mitigate each identified risk.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>As global ambient temperatures continue to rise, with the highest recorded annual averages since 1850 being within the last ten years, problems emerge for species exhibiting temperature-dependent sex determination. This is the process by which the sex of an animal’s embryo is determined based on the temperature of environment in which it is incubated, which can result in skewed sex ratios within a population like in the case of the critically endangered Hawksbill Sea Turtles (Eretmochelys imbricata). Reportedly, 85-95% of Hawksbills sampled in the wild are currently female [3]. This sex-imbalance can negatively impact the species’ ability to procreate, leading to the potential for extinction. Currently, no viable, long-term solutions exist to effectively and safely cool sea turtle eggs while still keeping them within their natural habitat. This research proposes the creation of sea turtle egg incubators designed to achieve a temperature range that will produce a higher percentage of male hatchlings to help rectify this imbalance in habitats heavily affected by climate change. These incubators are designed to be affordable, easy to build and, most importantly, safe for the sea turtle eggs. Three-month-long temperature trials for the incubator were conducted in Jamaica with conservationist community partners at Oracabessa Bay Sea Turtle Project. Results showed that this incubator is not only easy to manufacture and use, but that it successfully regulates the temperature range in favor of more male hatchlings, while also increasing the emergence rate of the hatchlings from 70% in natural nests to over 80%. During one of the hottest months in Jamaica, the incubator, deployed without water changes, doubled the predicted percentage of males produced by natural nests. When provided with cool water changes the incubator quintupled this value. Throughout the months of August to October, the incubator achieved a temperature range that is predicted to produce 85-99% male hatchlings, thus counteracting the feminization phenomenon occurring in nature.</title>
<link href="https://hdl.handle.net/1721.1/163419" rel="alternate"/>
<author>
<name>Espinal, Michael A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163419</id>
<updated>2025-10-30T03:23:53Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">As global ambient temperatures continue to rise, with the highest recorded annual averages since 1850 being within the last ten years, problems emerge for species exhibiting temperature-dependent sex determination. This is the process by which the sex of an animal’s embryo is determined based on the temperature of environment in which it is incubated, which can result in skewed sex ratios within a population like in the case of the critically endangered Hawksbill Sea Turtles (Eretmochelys imbricata). Reportedly, 85-95% of Hawksbills sampled in the wild are currently female [3]. This sex-imbalance can negatively impact the species’ ability to procreate, leading to the potential for extinction. Currently, no viable, long-term solutions exist to effectively and safely cool sea turtle eggs while still keeping them within their natural habitat. This research proposes the creation of sea turtle egg incubators designed to achieve a temperature range that will produce a higher percentage of male hatchlings to help rectify this imbalance in habitats heavily affected by climate change. These incubators are designed to be affordable, easy to build and, most importantly, safe for the sea turtle eggs. Three-month-long temperature trials for the incubator were conducted in Jamaica with conservationist community partners at Oracabessa Bay Sea Turtle Project. Results showed that this incubator is not only easy to manufacture and use, but that it successfully regulates the temperature range in favor of more male hatchlings, while also increasing the emergence rate of the hatchlings from 70% in natural nests to over 80%. During one of the hottest months in Jamaica, the incubator, deployed without water changes, doubled the predicted percentage of males produced by natural nests. When provided with cool water changes the incubator quintupled this value. Throughout the months of August to October, the incubator achieved a temperature range that is predicted to produce 85-99% male hatchlings, thus counteracting the feminization phenomenon occurring in nature.
Espinal, Michael A.
Foams, widely used in packaging, insulation, protective gear, and medical implants, are versatile materials but mechanically inefficient due to their bending-dominated microstructure, leading to an exponential loss of stiffness and strength at low relative densities. Architected materials address this limitation through engineered microstructures that achieve near-linear scaling of properties with relative density. However, truss- and plate-based designs suffer from stress concentrations, while shell-based architectures, though more mechanically efficient, remain highly sensitive to defects and are challenging to fabricate at scale via additive manufacturing. Spinodal architected materials, derived from scalable spinodal decomposition processes, offer a promising alternative with aperiodic, double-curvature microstructures that enhance mechanical efficiency at low relative densities. Nevertheless, their behavior beyond the elastic regime remains largely unexplored. This thesis investigates the nonlinear mechanics of spinodal architected materials by combining a comprehensive experimental dataset with computational modeling. A total of 107 unique morphologies were fabricated and subjected to uniaxial compression along three principal directions, resulting in a dataset of 321 stress-strain curves. Morphologies were generated via simulated spinodal decomposition, allowing controlled variation of anisotropy. Explicit finite element simulations, validated against experimental data, revealed that plastic energy dissipation dominates the large-strain mechanical response. To quantitatively link local morphology to global mechanical behavior, we introduce the Normal Participation Factor (NPF) — a scalar geometric parameter that captures the alignment between surface normals and the loading direction. We demonstrate that the NPF is a material-agnostic proxy for equivalent plastic strain and is linearly correlated with the total energy dissipated during deformation. Combining insights from both experiments and simulations, we establish the NPF as a first-order predictive tool for mechanical behavior under large strains, enabling structure-property predictions without reliance on costly simulations or extensive experimental testing. Altogether, this work lays the foundation for developing finite-strain structure-property relationships in spinodal architected materials, advancing their potential for real-world applications.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Advancing Tendon-Driven Robotic Systems: From Climbing Robots to String Actuators</title>
<link href="https://hdl.handle.net/1721.1/163418" rel="alternate"/>
<author>
<name>Poon, Ryan Joseph Mar</name>
</author>
<id>https://hdl.handle.net/1721.1/163418</id>
<updated>2025-10-30T03:21:02Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Advancing Tendon-Driven Robotic Systems: From Climbing Robots to String Actuators
Poon, Ryan Joseph Mar
Tendon-driven mechanisms provide a range of benefits for robotic systems, particularly by allowing actuators to be mounted at the base of a manipulator and reducing its inertia. This thesis explores two projects that exploit and advance tendon-driven mechanisms: a wheeled-grasping hybrid climbing robot with modular tendon-driven grasping arms and a hybrid twisted-winching string actuator. Called CLIMR (Cabled Limb Interlocking Modular Robot), the novel climbing robot adapts to columns of varying diameters by adding or removing modular arm links. CLIMR also features capabilities like self-locking (the ability of the robot to stay on the column without power), autonomous grasping, and rotation around the column axis. Mathematical models describe conditions for self-locking, vertical wheeled climbing, and complete grasping of a column. Simulations and experimental results validate the proposed models. The insights from CLIMR are then extended into general design strategies for future developments of similar hybrid climbing robots, focusing on methods to inform design decisions and assess metrics such as adaptability. Ultimately, this work provides a comprehensive framework for designing hybrid climbing robots, highlighting the potential of autonomous solutions for environments where climbing tall structures is critical. Stemming from this climbing robot work is a novel actuator system combining a twisted string actuator (TSA) with a winch mechanism. Relative to traditional hydraulic and pneumatic systems, TSAs are compact but face limitations in stroke length and velocity. This TSA-winch system overcomes these constraints without risking overtwisting by providing both high displacement winching and high force twisting modes. The design features a rotating turret that houses a winch and a worm gear transmission driven by a through-hole drive shaft. Models are developed for the combined displacement and velocity control of this system. Experiments validate the open loop model as well as the closed loop model, which uses a conductive string feedback controller with a gain scheduling and control effort allocation scheme. For specific cases that require large displacement winching followed by high force twisting over several repeatable cycles, an alternate design sacrifices complete string state control and replaces a motor with passive automatic clutches to achieve a seamless transition between modes triggered by the string load. The models of the clutch torque thresholds for this version of the actuator are verified by experiments. Overall, this research contributes to the development of more versatile and efficient actuation systems for tendon-driven robotic applications.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Coordination of distributed energy resources for a reliable,&#13;
resilient, and affordable decarbonized grid</title>
<link href="https://hdl.handle.net/1721.1/163417" rel="alternate"/>
<author>
<name>Jagadeesan Nair, Vineet</name>
</author>
<id>https://hdl.handle.net/1721.1/163417</id>
<updated>2025-10-30T03:20:58Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Coordination of distributed energy resources for a reliable,&#13;
resilient, and affordable decarbonized grid
Jagadeesan Nair, Vineet
Rapid decarbonization of the power grid is essential to meet climate goals by reducing emissions and enabling sustainable electrification of sectors like transport and heating. This requires shifting from centralized fossil-fuel generation to variable renewables like wind and solar. The grid must also adapt to a growing number of small-scale, distributed energy resources (DERs) at the edge, such as rooftop solar, batteries, electric vehicles, and heat pumps. This thesis focuses on modeling, optimizing, and coordinating DERs to enable a flexible, resilient, and affordable grid. First, it proposes a novel hierarchical local electricity market for low and medium-voltage distribution grids. This structure enables DER participation through decentralized and distributed optimization, respecting grid physics while preserving privacy and scalability. The market is applicable to both balanced and unbalanced radial grids using two different convex relaxations and power flow models. Grid services are also priced based on duality theory. Numerical simulations show improved dispatch efficiency, reliability, voltage regulation, and lower retail electricity rates. Second, the thesis applies game theory and mechanism design to extract flexibility from autonomous, strategic DER owners. A repeated Stackelberg game with incomplete information and intertemporal constraints yields equilibrium pricing with closed-form solutions. Third, a distributed decision-making framework is developed to coordinate DERs for grid resilience. It mitigates cyber-physical attacks and outages, ranging from 5 to 40% of peak load, using local flexibility and grid reconfiguration, extensively validated through both software and hardware-in-the-loop simulations. Finally, the thesis addresses DER hosting capacity. New algorithms are developed that co-optimize the siting and sizing of diverse DERs under uncertainty using Monte Carlo sampling, stochastic programming, and k-means clustering for scenario reduction. Results show that intelligent DER coordination can defer grid infrastructure upgrades and support greater renewable integration and electrified demand growth. Together, these contributions provide analytical and simulation tools to improve the planning and real-time operation of future distributed, low-carbon power grids.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Development and Utilization of Tandem Fluency in Human-Exoskeleton Interaction</title>
<link href="https://hdl.handle.net/1721.1/163416" rel="alternate"/>
<author>
<name>Koo, Bon H. (Brandon)</name>
</author>
<id>https://hdl.handle.net/1721.1/163416</id>
<updated>2025-10-30T03:20:27Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">The Development and Utilization of Tandem Fluency in Human-Exoskeleton Interaction
Koo, Bon H. (Brandon)
There is strong demand for portable technologies that enhance human power output while maintaining safety and range, not only in defense and industry but also in aerospace. Exoskeletons and other wearable powered devices have been proposed as solutions, but a major barrier to adoption is the issue of “fluency”: a combination of metrics representing the seamlessness of human-robot interaction. Most current exoskeleton systems, especially for non-cyclic motions, disrupt user intent and movement, often offering no benefit, or even causing harm by increasing discomfort and injury risk. This lack of fluency is frequently linked to poor intent recognition and absence of predictive control. To address this, we propose developing a human motion prediction system and studying its impact on fluency in exoskeleton-like devices and related human-centered technologies in real-world applications. We introduce an expanded metric “tandem fluency” based on conventional fluency, tailored for evaluating human-robot interaction (HRI) systems where human and robot agents are kinematically synchronized to perform functional tasks. We then develop a proof-of-concept and a functional deep neural network (DNN) capable of detecting human motion intent and predicting motion trajectories in advance using biosignals such as surface electromyography (sEMG). In parallel, we build and test prototype exoskeleton hardware with both single and multiple degrees of freedom. Finally, we conduct human trials with the full closed-loop tandem human-exoskeleton system to evaluate the impact of motion prediction-based control on tandem fluency. The results show that classification and regression prediction of human motion prior to initiation of physical motion is possible and can have performance necessary for practical application of this information, the prediction can be generated not only prior to the physical motion initiation, but often even before the full electrical activation of the primary agonist in many motions, the DNN is robust to variations in sensor hardware and input formatting, and furthermore the use of this prediction in the controls of a tandem robot system has potential to improve tandem fluency by positively affecting both subjective experience and objective/metabolic results.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Mapping Informality: An Approach to Classifying Sidewalk Informal&#13;
Practices and Elements Through Street View Imagery</title>
<link href="https://hdl.handle.net/1721.1/163415" rel="alternate"/>
<author>
<name>Co, Dominic Lim</name>
</author>
<id>https://hdl.handle.net/1721.1/163415</id>
<updated>2025-10-30T03:23:49Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Mapping Informality: An Approach to Classifying Sidewalk Informal&#13;
Practices and Elements Through Street View Imagery
Co, Dominic Lim
By 2050, the United Nations estimates that 68 percent of the world’s population will live in cities, with 90 percent of that growth concentrated in rapidly urbanizing informal communities across Africa, Latin America, and Asia. In these contexts, informality, defined as unregulated commerce, adaptive reuse of space, incremental construction, and self-organized infrastructure, shapes the everyday choreography Jane Jacobs called the “sidewalk ballet.” Yet because governments rarely collect census-grade data on such activity, informality remains poorly documented and weakly understood. This thesis introduces a transferable computational framework to formalize informality by transforming street imagery into an auditable taxonomy of informal street-level elements, activities, and practices. The framework is tested in two contrasting districts, i.e. District 1 and District 5 of Ho Chi Minh City, where sidewalks are highly contested by vendors, pedestrians, and regulators. The contribution of this thesis is two-fold. First, this thesis contributes a three-stage pipeline for classifying sidewalk informality. Using Seesaw (Moll et al., 2022), a CLIP-based feedback loop retrieves and soft-labels candidate scenes. This is followed by manual verification and fine-tuning a lightweight ResNet on binary categories (e.g. stationary vs mobile vendors, etc.). Compared to the zero-shot model Qwen-VL-Max, the fine-tuned ResNet delivered more balanced performance (precision/recall: 0.62– 0.78) and better handled nuanced, context-sensitive distinctions. In contrast, Qwen-VL-Max favored recall and object salience but struggled with subtle or spatial cues like mobile vs. stationary setups. Second, this thesis also developed a taxonomy and annotated dataset of informality which was used to reveal spatial inequities in sidewalk use. By converting curbside complexity into structured, updateable categories, the framework enables planners to recognize the adaptive value of informal practices, target genuine hazards, and design interventions for more equitable urban planning.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Nuclear Microreactor-Powered Container Ships for Maritime Decarbonization</title>
<link href="https://hdl.handle.net/1721.1/163414" rel="alternate"/>
<author>
<name>Dickerman, Matthew F.</name>
</author>
<id>https://hdl.handle.net/1721.1/163414</id>
<updated>2025-10-30T03:23:57Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Nuclear Microreactor-Powered Container Ships for Maritime Decarbonization
Dickerman, Matthew F.
The maritime shipping industry, responsible for approximately 3% of global greenhouse gas emissions, faces growing pressure to achieve net-zero emissions by 2050 under the International Maritime Organization (IMO) framework. Alternative fuels such as liquefied natural gas, ammonia, and methanol present challenges related to energy density, infrastructure, safety, and cost. Nuclear microreactors offer high energy density, zero operational emissions, and multi-year endurance, but require coordinated regulatory development and stakeholder engagement for commercial adoption.&#13;
&#13;
This thesis evaluates the feasibility of integrating microreactors into container ship designs employing electric propulsion and standardized intermodal logistics. Holos-Quad microreactors are selected based on their modular architecture, transportability, and compatibility with marine operations. Detailed ship concepts are developed for Feeder, Panamax, and New-Panamax classes, accompanied by a phased fleet development strategy.&#13;
&#13;
Economic modeling compares the lifecycle costs of conventional and microreactor-powered ships, incorporating capital expenditures, operating costs, financing assumptions, and carbon pricing. Fleet-level analysis indicates that microreactor-powered ships can achieve comparable or improved profitability while eliminating nearly 44 million metric tons of CO2e emissions across a ten-ship fleet. Sensitivity analyses confirm the robustness of these results across a wide range of future scenarios.&#13;
&#13;
By integrating stakeholder analysis, technical feasibility assessments, and economic modeling, this research establishes a commercially viable framework for zero-emission nuclear-powered shipping, offering a scalable pathway toward sustainable maritime operations.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A magnetic levitation testbed for development of real-time control frameworks applied in fusion</title>
<link href="https://hdl.handle.net/1721.1/163413" rel="alternate"/>
<author>
<name>Lee, Yehoon</name>
</author>
<id>https://hdl.handle.net/1721.1/163413</id>
<updated>2025-10-30T03:23:41Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">A magnetic levitation testbed for development of real-time control frameworks applied in fusion
Lee, Yehoon
This thesis presents the development of a magnetic levitation device as a hardware-in-theloop platform to be used for research in Control and Data Acquisition frameworks applied to fusion experiments. Specifically, the testbed is aimed to demonstrate distributed, modular control using a plasma control system framework being developed at the Plasma Science and Fusion Center at MIT. This framework integrates a real-time control framework, MARTe2, and a data management framework, MDSplus, to provide platform flexibility and robust data management for rapid prototyping of control systems. Both frameworks are widely used individually in fusion experiments worldwide. The magnetic levitation setup is centered around a single electromagnet coil which levitates a permanent disk magnet from above. Implemented with the integrated MARTe2/MDSplus framework, the controller, actuator, and sensors are distributed over the network. With the magnetic levitation testbed, this thesis achieves three objectives: 1. formulation of a physicsbased model of the system, 2. development of a controller in a modular, networked framework, and 3. training and implementation of learning-based methods within the framework. First, a state-space model for single-axis magnetic levitation is formulated based on theory and refined with magnetic field measurements. A feedback controller is then developed and implemented with MATLAB Simulink. Afterwards, a vision-based observer is developed to estimate position and tilt of the levitated magnet. Pose-image datasets are auto-labeled using fiducial markers and are used to train a convolutional neural network. Finally, the trained network will be applied in system identification of the final controlled system. Through the process of system development, this thesis proposes that the integrated MARTe2/MDSplus framework is robust in performing real-time control of a networked system, and its structural modularity is advantageous for developing and testing learning-based models.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Fast Assay of Bacteria Cell Permeability for Genetic&#13;
Transformation</title>
<link href="https://hdl.handle.net/1721.1/163412" rel="alternate"/>
<author>
<name>Nieves, Charmaine</name>
</author>
<id>https://hdl.handle.net/1721.1/163412</id>
<updated>2025-10-30T03:23:51Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">A Fast Assay of Bacteria Cell Permeability for Genetic&#13;
Transformation
Nieves, Charmaine
Bacterial cell genetic engineering is fundamental for research aiming to learn more about bacterial species for a broad range of applications. One method of intracellular delivery of foreign DNA during the genetic engineering process is the use of electroporation to create pores along the bacterial cell membrane. Current methods for assessing pore formation do not directly measure cell permeabilization or enable same-day assessment. In this thesis, a novel fast-screening protocol combining SYTOX green, microfluidics, and fluorescence imaging is evaluated for its capability to assess multiple conditions for cell permeabilization within a single day. By imaging bulk suspensions of post-electroporated cells stained with intracellularly delivered SYTOX, multiple electroporation conditions can be rapidly screened for cell permeabilization. This fast-screening protocol utilizes standard microbiology equipment and low-cost microfluidic imaging chambers, lowering the barrier to adoption and significantly reducing experimental time compared to conventional protocols involving foreign DNA delivery. Importantly, by decoupling permeabilization assessment from foreign DNA uptake, this method isolates the effect of membrane permeabilization from confounding factors such as restriction-modification systems. As a result, it provides a more accurate qualitative and quantitative assessment of bacterial membrane disruption. This approach enables same-day evaluation of electroporation conditions regardless of bacterial growth rate, potentially accelerating the optimization process for intracellular delivery in gene editing applications.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Probabilistic Human Arm Motion Prediction via Structured Multitask Variational Gaussian Processes</title>
<link href="https://hdl.handle.net/1721.1/163411" rel="alternate"/>
<author>
<name>Chong, Jinger S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163411</id>
<updated>2025-10-30T03:23:40Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Probabilistic Human Arm Motion Prediction via Structured Multitask Variational Gaussian Processes
Chong, Jinger S.
Accurate human motion prediction with uncertainty estimation is essential for safe and efficient human-robot collaboration, where robots must anticipate and react to human movements in real-time. Existing methods either rely on sophisticated techniques that demand extensive training data and sacrifice interpretability, or use simpler approaches like conventional Gaussian Processes (GPs) that fall short in performance. To address this gap, we propose a novel structured multitask variational GP framework that explicitly incorporates joint dependencies to reflect human kinematics. We further enhance this framework by integrating angular velocity constraints, which improve the physical plausibility of predictions. The addition of constraints alone yields up to a 66% reduction in mean angle error (MAE) and an 84% improvement in the likelihood of predicting ground truth (NLL), outperforming standard GP baselines across a wide range of motion types and prediction horizons. Among model variants, our structured GP with constraints offers the best tradeoff—achieving MAE within 1.1–2.6% and NLL within 0.001–0.012 of the best-performing model, while maintaining significantly lower overconfidence rates (OCR), particularly at short horizons where the independent GP model OCR reaches nearly 45%. These results underscore the importance of incorporating structure and context in human motion prediction, demonstrating that even simpler probabilistic models like GPs can achieve substantial performance gains when augmented with such information.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Permanent Magnet Synchronous Motors: Nonlinear Dynamic Modeling, Hardware Characterization, and High-Bandwidth Torque Control for Applications in Dynamic Robotics</title>
<link href="https://hdl.handle.net/1721.1/163410" rel="alternate"/>
<author>
<name>Roy, Ronak</name>
</author>
<id>https://hdl.handle.net/1721.1/163410</id>
<updated>2025-10-30T03:23:45Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Permanent Magnet Synchronous Motors: Nonlinear Dynamic Modeling, Hardware Characterization, and High-Bandwidth Torque Control for Applications in Dynamic Robotics
Roy, Ronak
The high-level control algorithms that are responsible for achieving dynamic locomotion in legged robots depend on accurate torque production for matching real-life performance with simulated performance. To achieve accurate torque production, actuators must run high-bandwidth, low-level torque control. Developing high performance low-level controllers requires accurate actuator models. This thesis covers the physical model of a Permanent Magnet Synchronous Motors (PMSM), a very common type of actuator in dynamic robotics. This thesis details the derivation of the PMSM linear model, how to adapt the model dependent on the physical construction of a real motor, and the implementation of FieldOriented Control (FOC) to achieve torque control. This thesis also describes a novel design of a high-precision dynamometer, which allows a motor to be coupled with an impedance and a torque sensor in order to accurately characterize the torque production characteristics of the motor. Using this dynamometer and other experimental setups, this thesis validates the model and determines parameters for multiple different actuators. Finally, this thesis proposes an augmented PMSM model that considers the nonlinear saturation behavior of the motor, validating the principle with hardware experiments, and demonstrates a nonlinear torque model and gain-scheduled current controller that improve torque tracking performance.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Development of an Apparatus and Testing Strategy for Characterizing Rolling Resistance of Omnidirectional Wheels</title>
<link href="https://hdl.handle.net/1721.1/163409" rel="alternate"/>
<author>
<name>Ilkbahar, Kayra B.</name>
</author>
<id>https://hdl.handle.net/1721.1/163409</id>
<updated>2025-10-30T03:23:38Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Development of an Apparatus and Testing Strategy for Characterizing Rolling Resistance of Omnidirectional Wheels
Ilkbahar, Kayra B.
Omnidirectional wheels (omni wheels) are a type of wheel technology similar to caster wheels but capable of simultaneous longitudinal and lateral motion, making them suitable for holonomic motion applications. In recent years, their popularity has grown substantially in areas such as educational robotics, autonomous vehicles, and industrial automation. Despite their similarity to caster wheels in both function and application, omni wheels are a much less mature technology and few agreed-upon standards exist for their design and testing. This thesis covers the design of a test procedure and its requisite test apparatus to characterize the rolling resistance of omni wheels across various test conditions, and focuses specifically on the mechanical and electrical design of an apparatus which can measure the rolling resistance coefficient of omni wheels while modulating their load weight, travel angle, and travel speed.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Magnetotelluric Study of Mantle Heterogeneities Beneath the Northeastern United States</title>
<link href="https://hdl.handle.net/1721.1/163408" rel="alternate"/>
<author>
<name>Kim, Jae Deok</name>
</author>
<author>
<name>Evans, Rob. L.</name>
</author>
<id>https://hdl.handle.net/1721.1/163408</id>
<updated>2026-04-14T03:27:03Z</updated>
<published>2025-10-25T00:00:00Z</published>
<summary type="text">A Magnetotelluric Study of Mantle Heterogeneities Beneath the Northeastern United States
Kim, Jae Deok; Evans, Rob. L.
Analysis of magnetotelluric (MT) data across the northern Appalachian region reveals significantmantle heterogeneity. By inverting a subset of long‐period EarthScope USArray MT data, we constructed athree‐dimensional electrical resistivity model that provides new insights into the seismic low‐velocity NorthernAppalachian Anomaly (NAA). Comparison with empirical conductivity models indicates that the low‐resistivity anomalies along the northern and western edges of the NAA cannot be explained by temperaturealone and likely require the presence of volatiles, such as CO2‐rich or hydrous melts, or other volatile‐bearingphases, to reduce mantle resistivity to the observed levels. In addition, our modeling suggests that certainalternative lithologies, particularly hydrous clinopyroxenites, may also contribute to the observed conductivity,implying that compositional heterogeneity plays a role alongside fluids or melt. These conductive features mayreflect partial melting or metasomatic enrichment of carbonated and hydrated mantle domains introduced duringpast subduction or plume interactions, potentially mobilized by edge‐driven convection at lithosphericboundaries. We also resolve a deep resistive feature in western New England, interpreted as a dry and depletedlithospheric block, though its nature remains uncertain due to limited seismic expression and the relatively lowsensitivity of MT to resistive structures. Our results suggest that the upper mantle beneath New England is bothcompositionally and thermally heterogeneous, shaped by a complex tectonic history involving subduction,metasomatism, lithospheric thinning, and ongoing asthenospheric processes.
</summary>
<dc:date>2025-10-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>“Reason” En Masse</title>
<link href="https://hdl.handle.net/1721.1/163407" rel="alternate"/>
<author>
<name>Watkins, Eliot</name>
</author>
<id>https://hdl.handle.net/1721.1/163407</id>
<updated>2026-04-14T03:27:02Z</updated>
<published>2025-08-03T00:00:00Z</published>
<summary type="text">“Reason” En Masse
Watkins, Eliot
We can use “reason,” with its normative sense, as both a count noun (“there is a reason for her to Φ”) and a mass noun (“there is plenty of reason for her to Φ”). How are the count and mass senses of “reason” related? Daniel Fogal argues that the mass sense is fundamental: Just as lights are merely those things that give light and anxieties are merely those things that give anxiety, reasons are merely those things that give reason. In this article, I develop an opposing analysis of the mass noun “reason” that puts reasons first. Just as the detail on the Mona Lisa is composed of particular details (brushstrokes and colors) and the crime in L.A. is composed of particular crimes (pickpocketings and speeding offenses), so the reason for you to go to the dentist is composed of your reasons to go. Reasons stand to reason as parts to a whole. Such a picture makes reasons fundamental once more, but it has a cost of entry. In order to accommodate the behavior of “reason” in comparative constructions, you need to abandon the idea that reasons are facts we can count up. On the contrary: They're not facts, and you can't count them.
</summary>
<dc:date>2025-08-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Battle in the Clouds</title>
<link href="https://hdl.handle.net/1721.1/163406" rel="alternate"/>
<author>
<name>Moran‐Thomas, Amy</name>
</author>
<id>https://hdl.handle.net/1721.1/163406</id>
<updated>2026-04-14T03:27:00Z</updated>
<published>2025-07-18T00:00:00Z</published>
<summary type="text">Battle in the Clouds
Moran‐Thomas, Amy
This narrative experiment brings together scenes from my family histories in western Pennsylvania coal country, alongsideongoing visits to learn about rising health issues in the region today. Increasing numbers of residents express concerns aboutchronic problems such as young cancers, and many people worry about potential exposures coming from past and present energyinfrastructures. These growing health concerns, some of them my own, also brought me to revisit Rachel Carson’s medical writingsfrom her family home in western Pennsylvania. Looking out from her childhood bedroom with my mother and returning toCarson’s archival notes on “transmissible cancers” and her childhood essay, “A Battle in the Clouds,” these descriptions circlelong-accumulating debates about chronic diseases and their causes and effects over time. Returning to varieties of changing cloudstoday, this essay reflects on how chronic exposures—unevenly accumulating in bodies and landscapes and across generations—show “undone sciences” of many kinds in need of collective attention. It traces how families are grappling with the sense ofneeding to connect their own dots; the ways local communities are coming together to process displaced responsibilities; and theimplications for health, public trust, and care when so much is left in clouds.
</summary>
<dc:date>2025-07-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Leaf Stripping on Uniform Attachment Trees</title>
<link href="https://hdl.handle.net/1721.1/163405" rel="alternate"/>
<author>
<name>Addario‐Berry, Louigi</name>
</author>
<author>
<name>Brandenberger, Anna</name>
</author>
<author>
<name>Briend, Simon</name>
</author>
<author>
<name>Broutin, Nicolas</name>
</author>
<author>
<name>Lugosi, Gábor</name>
</author>
<id>https://hdl.handle.net/1721.1/163405</id>
<updated>2026-04-14T03:27:01Z</updated>
<published>2025-08-04T00:00:00Z</published>
<summary type="text">Leaf Stripping on Uniform Attachment Trees
Addario‐Berry, Louigi; Brandenberger, Anna; Briend, Simon; Broutin, Nicolas; Lugosi, Gábor
In this note, we analyze the performance of a simple root-finding algorithm in uniform attachment trees. The leaf-stripping algorithm recursively removes all leaves of the tree for a carefully chosen number of rounds. We show that, with probability 1 − &#120576;, the set of remaining vertices contains the root and has a size only depending on &#120576; but noton the size of the tree.
</summary>
<dc:date>2025-08-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Unnatural Wills: Inheritance Disputes and Inequality</title>
<link href="https://hdl.handle.net/1721.1/163404" rel="alternate"/>
<author>
<name>O'Brien, Shay</name>
</author>
<id>https://hdl.handle.net/1721.1/163404</id>
<updated>2026-04-14T03:26:54Z</updated>
<published>2025-07-23T00:00:00Z</published>
<summary type="text">Unnatural Wills: Inheritance Disputes and Inequality
O'Brien, Shay
Within the conceptual frame of relational economic sociology, inheritance disputes are a canonical form of relational mismatch.But the social patterning of relational mismatches, and their various ties to inequality, remain murky. In this paper, I examineall known inheritance disputes in Dallas from 1895–1945 within their social context to generate hypotheses about the rela-tionship between inequality and mismatches more broadly. Inheritance disputes were usually resolved by increasing the spreadof fortunes; in this sense, they moderated wealth inequality between individuals. But not everyone was equally able to maketheir preferred estate distribution a reality. Using a series of case studies, I argue that dispute resolutions tended to reifynormative family structures and naturalize sharp, moralized distinctions between fuzzy social categories. The legal resolutionsto this class of relational mismatches may marginally mitigate individual‐level wealth inequality and simultaneously producecategorical inequalities by race, class, gender, sexuality, and family structure. I conclude with a set of hypotheses and questionsfor future studies.
</summary>
<dc:date>2025-07-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Decentralization, Blockchain, Artificial Intelligence (AI): Challenges and Opportunities</title>
<link href="https://hdl.handle.net/1721.1/163403" rel="alternate"/>
<author>
<name>Hui, Xiang</name>
</author>
<author>
<name>Tucker, Catherine</name>
</author>
<id>https://hdl.handle.net/1721.1/163403</id>
<updated>2026-04-14T03:27:03Z</updated>
<published>2025-07-22T00:00:00Z</published>
<summary type="text">Decentralization, Blockchain, Artificial Intelligence (AI): Challenges and Opportunities
Hui, Xiang; Tucker, Catherine
New technologies like blockchain allow firms to decentralize core functions, forcing managers to reconsider the trade-off be-tween closed, proprietary control and open strategies that involve external contributors. While proponents often advocate forfull decentralization, we argue this view overlooks important economic trade-offs. We propose that the better strategy is selectivedecentralization: a disciplined approach to choosing where to centralize for efficiency and where to decentralize for innovation.We propose a three-level framework—Infrastructure, Decision-Making, and Operational Control—to guide this choice, helpingmanagers analyze the specific costs and benefits at each layer. We apply this framework to the strategic adoption of ArtificialIntelligence (AI), where the technology's powerful pull toward centralization provides a stark test case. Our analysis shows thatan “open source AI” strategy—decentralizing operations to foster innovation while keeping infrastructure centralized for effi-ciency—is more pragmatic than full decentralization. Selective decentralization therefore emerges as a key managerial capabilityfor capturing blockchain's benefits without sacrificing scale efficiencies.
</summary>
<dc:date>2025-07-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Characterizing the response time of unpumped oxygen optodes for profiling applications</title>
<link href="https://hdl.handle.net/1721.1/163402" rel="alternate"/>
<author>
<name>Park, Ellen</name>
</author>
<author>
<name>Nicholson, David</name>
</author>
<author>
<name>Dever, Mathieu</name>
</author>
<author>
<name>Atamanchuk, Dariia</name>
</author>
<author>
<name>Richards, Clark</name>
</author>
<id>https://hdl.handle.net/1721.1/163402</id>
<updated>2026-04-14T03:26:58Z</updated>
<published>2025-07-26T00:00:00Z</published>
<summary type="text">Characterizing the response time of unpumped oxygen optodes for profiling applications
Park, Ellen; Nicholson, David; Dever, Mathieu; Atamanchuk, Dariia; Richards, Clark
The response times of the Aanderaa 4330, Aanderaa 4330 WTW, RBRcoda T.ODO|slow, and PyroScience PICO-O2-SUB were evaluated in the laboratory over a range of profiling speeds at two temperatures. The PyroScience PICO-O2-SUB had the fastest response time (1–4 s), followed by the RBRcoda T.ODO|slow (~ 15–35 s), Aanderaa 4330 (~ 30–60 s), and Aanderaa 4330W (~ 50–100 s). This study provides recommendations on improving the quality of oxygen data from optodes in profiling applications by additionally assessing the impact of response time testing setups, thermal inertia effects, and foil types on sensor response times. This study provides a new response time function based on physical principles to predict response time for these four optode types.
</summary>
<dc:date>2025-07-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Tapping ressentiment: pharmakeus and the sublime poisons of white supremacy</title>
<link href="https://hdl.handle.net/1721.1/163401" rel="alternate"/>
<author>
<name>Ruffin, Jessica</name>
</author>
<id>https://hdl.handle.net/1721.1/163401</id>
<updated>2026-04-14T03:26:37Z</updated>
<published>2025-04-14T00:00:00Z</published>
<summary type="text">Tapping ressentiment: pharmakeus and the sublime poisons of white supremacy
Ruffin, Jessica
This auto-philosophical essay takes up Nietzsche’s concept of ressentiment; the archival record of Mark and Phillis; and Derrida’s engagement with pharmakon as a means of working through the question of what is to be done with the poisons of white supremacy, which persist in present worldly environments as well as our bodies and histories. Engaging aesthetics, Black thought, and phenomenology of race, the work aims for an embodied therapeutic movement that might open the way for ethical receptivity within the white supremacist world. Eschewing a universalizing tone while recognizing the ahistoricities of white supremacist cultural techniques, the essay enlists autobiography and practices of the self to give voice to the reservoirs of white supremacist poison permeating a worldly body.
</summary>
<dc:date>2025-04-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>SLAM Handbook: From Localization and Mapping to Spatial Intelligence</title>
<link href="https://hdl.handle.net/1721.1/163400" rel="alternate"/>
<author>
<name>Carlone, Luca</name>
</author>
<author>
<name>Kim, Ayoung</name>
</author>
<author>
<name>Barfoot, Timothy</name>
</author>
<author>
<name>Cremers, Daniel</name>
</author>
<author>
<name>Dellaert, Frank</name>
</author>
<id>https://hdl.handle.net/1721.1/163400</id>
<updated>2026-04-14T03:25:36Z</updated>
<summary type="text">SLAM Handbook: From Localization and Mapping to Spatial Intelligence
Carlone, Luca; Kim, Ayoung; Barfoot, Timothy; Cremers, Daniel; Dellaert, Frank
Simultaneous Localization and Mapping —better known as SLAM— refers to the&#13;
fundamental problem of building spatial models of an environment while simultaneously determining the position of a robot within that environment. The term&#13;
itself was first coined in 1995 by Hugh Durrant-Whyte and John Leonard, marking&#13;
the formalization of a problem that sits at the intersection of robotics, geometry,&#13;
controls, and probabilistic inference.&#13;
SLAM is as elegant as it is formidable. At its core, it addresses the challenge&#13;
of reasoning over high-dimensional, uncertain, and dynamic systems. The process&#13;
demands precise spatial inference and robust probabilistic modeling to build coherent maps of the world —maps that must be constructed in real time, often under&#13;
conditions of noise and ambiguity.&#13;
What makes SLAM particularly compelling is its universality. In computer vision,&#13;
it is mirrored in the problem of Structure from Motion; in robotics, it underpins&#13;
everything from indoor autonomous navigation to planetary exploration and selfdriving cars. Since its inception, SLAM has inspired tens of thousands of research&#13;
papers, drawing deeply from disciplines as diverse as physics, statistics, computer&#13;
vision, geometry, controls, and machine learning. Its evolution has catalyzed the&#13;
development of increasingly capable autonomous systems, able to operate at scale&#13;
in complex, open-world environments.&#13;
This volume brings together contributions from some of the field’s foremost experts and rising stars. The chapters represent the state of the art in SLAM today,&#13;
reflecting both the depth of theoretical innovations and the breadth of practical&#13;
applications. From its early formulations based on Kalman filters and Bayesian&#13;
estimation, SLAM has matured into a rich tapestry of mathematical frameworks&#13;
—encompassing graph-based optimization, factor graphs, nonlinear least squares,&#13;
and deep learning-based techniques. Beyond introducing the mathematical foundations of SLAM, this volume provides valuable guidance to the practitioner by&#13;
discussing real-world use cases ranging from vision-based and LiDAR-based SLAM&#13;
systems to legged locomotion. It also covers recent developments in Spatial AI,&#13;
showing how advances in deep learning, differentiable rendering, and large vision and language models point the way toward representations that provide robots with&#13;
a rich spatial and semantic understanding of their environment.
</summary>
</entry>
<entry>
<title>Report to the President for year ended June 30, 2025, Music and Theater Arts</title>
<link href="https://hdl.handle.net/1721.1/163399" rel="alternate"/>
<author>
<name>Scheib, Jay</name>
</author>
<id>https://hdl.handle.net/1721.1/163399</id>
<updated>2025-10-29T03:08:36Z</updated>
<published>2025-06-30T00:00:00Z</published>
<summary type="text">Report to the President for year ended June 30, 2025, Music and Theater Arts
Scheib, Jay
This report contains the following sections: Accomplishments; Personnel Information; Teaching and Curriculum; Research Activities; Awards and Recognition; School and Institute Service; and Development.
</summary>
<dc:date>2025-06-30T00:00:00Z</dc:date>
</entry>
<entry>
<title>Towards a Science Exocortex</title>
<link href="https://hdl.handle.net/1721.1/163398" rel="alternate"/>
<author>
<name>Yager, Kevin G.</name>
</author>
<id>https://hdl.handle.net/1721.1/163398</id>
<updated>2026-04-14T03:18:59Z</updated>
<published>2024-08-15T00:00:00Z</published>
<summary type="text">Towards a Science Exocortex
Yager, Kevin G.
Artificial intelligence (AI) methods are poised to revolutionize intellectual work, with generative AI enabling automation of text analysis, text generation, and simple decision making or reasoning. The impact to science is only just beginning, but the opportunity is significant since scientific research relies fundamentally on extended chains of cognitive work. Here, we review the state of the art in agentic AI systems, and discuss how these methods could be extended to have even greater impact on science. We propose the development of an exocortex, a synthetic extension of a person's cognition. A science exocortex could be designed as a swarm of AI agents, with each agent individually streamlining specific researcher tasks, and whose inter-communication leads to emergent behavior that greatly extend the researcher's cognition and volition.
</summary>
<dc:date>2024-08-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>Domestic groundwater wells in Appalachia show evidence of low-dose, complex mixtures of legacy pollutants</title>
<link href="https://hdl.handle.net/1721.1/163397" rel="alternate"/>
<author>
<name>Bugher, Nicolette Anna</name>
</author>
<author>
<name>Xiong, Boya</name>
</author>
<author>
<name>Gentles, Runako I.</name>
</author>
<author>
<name>Glist, Lukas D.</name>
</author>
<author>
<name>Siegel, Helen G.</name>
</author>
<author>
<name>Johnson, Nicholaus P.</name>
</author>
<author>
<name>Clark, Cassandra J.</name>
</author>
<author>
<name>Deziel, Nicole</name>
</author>
<author>
<name>Saiers, James E.</name>
</author>
<author>
<name>Plata, Desiree</name>
</author>
<id>https://hdl.handle.net/1721.1/163397</id>
<updated>2026-04-14T03:18:55Z</updated>
<published>2024-06-20T00:00:00Z</published>
<summary type="text">Domestic groundwater wells in Appalachia show evidence of low-dose, complex mixtures of legacy pollutants
Bugher, Nicolette Anna; Xiong, Boya; Gentles, Runako I.; Glist, Lukas D.; Siegel, Helen G.; Johnson, Nicholaus P.; Clark, Cassandra J.; Deziel, Nicole; Saiers, James E.; Plata, Desiree
Lack of water quality data for private drinking water sources prevents robust evaluation of exposure risk for communities co-located with historically contaminated sites and ongoing industrial activity. Areas of the Appalachian region of the United States (i.e., Pennsylvania, Ohio and West Virginia) contain extensive hydraulic fracturing activity, as well as other extractive and industrial technologies, in close proximity to communities reliant on private drinking water sources, creating concern over potential groundwater contamination. In this study, we characterized volatile organic compound (VOC) occurrence at 307 private groundwater well sites within Pennsylvania, Ohio, and West Virginia. The majority (97%) of water samples contained at least one VOC, while the average number of VOCs detected at a given site was 5 ± 3. The majority of individual VOC concentrations fell below applicable U.S. Environmental Protection Agency (EPA) Maximum Contamination Levels (MCLs), except for chloroform (MCL of 80 μg L−1; n = 1 at 98 μg L−1), 1,2-dibromoethane (MCL of 0.05 μg L−1; n = 3 ranging from 0.05 to 0.35 μg L−1), and 1,2-dibromo-3-chloropropane (MCL of 0.2 μg L−1; n = 7 ranging from 0.20 to 0.58 μg L−1). To evaluate well susceptibility to VOCs from industrial activity, distance to hydraulic fracturing site was used to assess correlations with contaminant occurrences. Proximity to closest hydraulic fracturing well-site revealed no statistically significant linear relationships with either individual VOC concentrations, or frequency of VOC detections. Evaluation of other known industrial contamination sites (e.g., US EPA Superfund sites) revealed elevated levels of three VOCs (chloroform, toluene, benzene) in groundwaters within 10 km of those Superfund sites in West Virginia and Ohio, illuminating possible point source influence. Lack of correlation between VOC concentrations and proximity to specific point sources indicates complex geochemical processes governing trace VOC contamination of private drinking water sources. While individual concentrations of VOCs fell well below recommended human health levels, the low dose exposure to multiple VOCs occurring in drinking supplies for Appalachian communities was noted, highlighting the importance of groundwater well monitoring.
</summary>
<dc:date>2024-06-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Opportunity for Utilizing End‐of‐Life Scrap to Meet Growing Copper Demand</title>
<link href="https://hdl.handle.net/1721.1/163396" rel="alternate"/>
<author>
<name>Diersen, Isabel</name>
</author>
<author>
<name>Bhuwalka, Karan</name>
</author>
<author>
<name>Olivetti, Elsa</name>
</author>
<id>https://hdl.handle.net/1721.1/163396</id>
<updated>2026-04-14T03:27:00Z</updated>
<published>2025-07-11T00:00:00Z</published>
<summary type="text">The Opportunity for Utilizing End‐of‐Life Scrap to Meet Growing Copper Demand
Diersen, Isabel; Bhuwalka, Karan; Olivetti, Elsa
As electrification trends and clean energy deployment drive up copper demand, there will be pressure on copper supply chains.With annual copper demand expected to grow by 50% and reach 49 Mt by 2035, the world will continue to need additional sourcesof copper supply. While expanding mining projects could increase copper production, given the significant stock of material,secondary copper can play a vital role in meeting demand. We analyze the opportunity to meet growing copper demand via in-creased scrap collection and improved technical recycling efficiencies. We use an economic model of the global copper system—with China analyzed separately from the rest of the world—to quantify supply evolution by incorporating price feedback betweendemand and supply. The model quantifies the impact of the increased collection on the displacement of mining production anddemonstrates how increasing recycling can modulate supply risks and copper prices. Aligned with recent literature on futurecopper flows, we find that there is an opportunity to increase scrap supply in 2040 by 46% (6.3 Mt) compared with the baseline.
</summary>
<dc:date>2025-07-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Topographic Stress as a Mechanical Weathering Mechanism on Titan</title>
<link href="https://hdl.handle.net/1721.1/163395" rel="alternate"/>
<author>
<name>Seltzer, Cassandra</name>
</author>
<author>
<name>Martel, Stephen J</name>
</author>
<author>
<name>Perron, J Taylor</name>
</author>
<id>https://hdl.handle.net/1721.1/163395</id>
<updated>2026-04-14T03:26:57Z</updated>
<published>2025-07-29T00:00:00Z</published>
<summary type="text">Topographic Stress as a Mechanical Weathering Mechanism on Titan
Seltzer, Cassandra; Martel, Stephen J; Perron, J Taylor
Titan is unique among icy moons for its active surface processes and extensive erosional features.The presence of coarse sediment suggests that mechanical weathering breaks down Titan's surface material, butthe exact processes of mechanical weathering are unknown. We tested the idea that topographic features perturbambient crustal stresses enough to generate or enhance fractures. We used a two‐dimensional boundary elementmodel to predict the likely stress state within hypothetical erosional landforms on Titan, including river valleysand isolated ridges, and to model the locations and types of resulting fractures. Our results suggest thattopographic stress perturbations are indeed sufficient to generate fractures and drive mechanical weathering,with little sensitivity to the density of the material making up Titan's crust and landforms and no dependence onits elastic moduli. For material density of 800 to1,200 kg/m3, opening‐mode failure is predicted to occur withinhypothetical Titan landforms with a width of hundreds of meters, relief of tens of meters or more, and horizontaltidal or tectonic stresses up to 1 MPa of compression, which encompasses typical predicted tidal stresses rangingbetween 10 kPa of compression and 10 kPa of tension. Under the same conditions, shear fracture is predicted tooccur if the cohesion of the material is less than 100 kPa or if pore fluid pressures reduce local effective normalstresses. We therefore suggest that Titan's crust may be highly fractured and permeable, and that the predictedfractures could help generate sediment and provide pathways for subsurface transport of fluids.
</summary>
<dc:date>2025-07-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>The existence of subspace designs</title>
<link href="https://hdl.handle.net/1721.1/163394" rel="alternate"/>
<author>
<name>Keevash, Peter</name>
</author>
<author>
<name>Sah, Ashwin</name>
</author>
<author>
<name>Sawhney, Mehtaab</name>
</author>
<id>https://hdl.handle.net/1721.1/163394</id>
<updated>2026-04-14T03:26:56Z</updated>
<published>2025-07-17T00:00:00Z</published>
<summary type="text">The existence of subspace designs
Keevash, Peter; Sah, Ashwin; Sawhney, Mehtaab
We prove the existence of subspace designs with anygiven parameters, provided that the dimension of theunderlying space is sufficiently large in terms of theother parameters of the design and satisfies the obvi-ous necessary divisibility conditions. This settles an openproblem from the 1970s. Moreover, we also obtain anapproximate formula for the number of such designs.
</summary>
<dc:date>2025-07-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Verbal disputes, social totality, and trans politics</title>
<link href="https://hdl.handle.net/1721.1/163393" rel="alternate"/>
<author>
<name>Zhou, Katie</name>
</author>
<id>https://hdl.handle.net/1721.1/163393</id>
<updated>2026-04-14T03:27:01Z</updated>
<published>2025-07-22T00:00:00Z</published>
<summary type="text">Verbal disputes, social totality, and trans politics
Zhou, Katie
A puzzling feature about the dispute over whether transwomen are women is its apparent verbality: gender-critical theorists assert a biological fact about transwomen, and trans-inclusionary theorists respond byasserting a social/psychological fact about trans women.But plausibly, both theorists’ assertions are compatible,and so there is no real disagreement. In this paper, Iargue that the two theorists are not talking past eachother. But I also argue that extant accounts of the dis-pute fail to adequately explain why the dispute is notmerely verbal. Indeed, clarifying the dispute requires usto ask what it is for something to be a gender concept,as opposed to a merely biological or social/psychologicalconcept. After developing a questions-based account ofconcepts and conceptual roles, I suggest that a neces-sary feature of gender concepts is that we use them toconstruct unified and portable narratives about how wewill stand in relation to one another as social individu-als, regardless of the particular social context we are in.This allows us to understand the trans woman disputeas a dispute about whether we should prioritize biolog-ical or social/psychological facts when interpreting ourrelations to one another.
</summary>
<dc:date>2025-07-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Microscale Metal Additive Manufacturing by Solid‐State Impact Bonding of Shaped Thin Films</title>
<link href="https://hdl.handle.net/1721.1/163392" rel="alternate"/>
<author>
<name>Reiser, Alain</name>
</author>
<author>
<name>Schuh, Christopher A</name>
</author>
<id>https://hdl.handle.net/1721.1/163392</id>
<updated>2026-04-14T03:26:53Z</updated>
<published>2025-07-14T00:00:00Z</published>
<summary type="text">Microscale Metal Additive Manufacturing by Solid‐State Impact Bonding of Shaped Thin Films
Reiser, Alain; Schuh, Christopher A
The deposition of device-grade inorganic materials is one key challenge towardthe implementation of additive manufacturing (AM) in microfabrication, andto that end, a broad range of physico-chemical principles has been exploredfor 3D fabrication with micro- and nanoscale resolution. Yet, for metals,a process that achieves material quality rivalling that of established thin-ﬁlmdeposition methods, and at the same time, has the potential to combinehigh throughput production with a broad palette of processable materials, isstill lacking. Here, the kinetic, solid-state bonding of metal thin ﬁlms for theadditive assembly of high-purity, high-density metals with micrometer-scaleprecision is introduced. Indirect laser ablation accelerates micrometer-thickgold ﬁlms to hundreds of meters per second without their heating or ablation.Their subsequent impact on the substrate above a critical velocity forms apermanent, metallic bond in the solid state. Stacked layers are of high density(&gt;99%). By deﬁning thin-ﬁlm layers with established lithographic methodsprior to launch, a variable feature size (2–50 µm), arbitrary shape of bondedlayers, and parallel transfer of up to 36 independent ﬁlm units in a single shot,is demonstrated. Thus, the solid-state kinetic bonding principle as a viableand potentially versatile route for micro-scale AM of metals is established.
</summary>
<dc:date>2025-07-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Persistent Disruptions in Prefrontal Connectivity Despite Behavioral Rescue by Environmental Enrichment in a Mouse Model of Rett Syndrome</title>
<link href="https://hdl.handle.net/1721.1/163391" rel="alternate"/>
<author>
<name>Ährlund‐Richter, Sofie</name>
</author>
<author>
<name>Harpe, Jonathan</name>
</author>
<author>
<name>Fernandes, Giselle</name>
</author>
<author>
<name>Lam, Ruby</name>
</author>
<author>
<name>Sur, Mriganka</name>
</author>
<id>https://hdl.handle.net/1721.1/163391</id>
<updated>2026-04-14T03:26:28Z</updated>
<published>2025-07-17T00:00:00Z</published>
<summary type="text">Persistent Disruptions in Prefrontal Connectivity Despite Behavioral Rescue by Environmental Enrichment in a Mouse Model of Rett Syndrome
Ährlund‐Richter, Sofie; Harpe, Jonathan; Fernandes, Giselle; Lam, Ruby; Sur, Mriganka
Rett syndrome, a neurodevelopmental disorder caused by loss-of-function mutations in the MECP2 gene, is characterized by severe motor, cognitive, and emotional impairments. Some of the deficits may result from changes in cortical connections, especially downstream projections of the prefrontal cortex (PFC), which may also be targets of restoration following rearing conditions such as environmental enrichment that alleviate specific symptoms. Here, using a heterozygous Mecp2+/− female mouse model closely analogous to human Rett syndrome, we investigated the impact of early environmental enrichment on behavioral deficits and PFC connectivity. Behavioral analyses revealed that enriched housing rescued fine motor deficits and reduced anxiety, with enrichment-housed Mecp2+/− mice performing comparably to wild-type (WT) controls in rotarod and open field assays. Anatomical mapping of top-down anterior cingulate cortex (ACA) projections demonstrated altered PFC connectivity in Mecp2+/− mice, with increased axonal density in the somatosensory cortex and decreased density in the motor cortex compared to WT controls. ACA axons revealed shifts in hemispheric distribution, particularly in the medial network regions, with Mecp2+/− mice exhibiting reduced ipsilateral dominance. These changes were unaffected by enriched housing, suggesting that structural abnormalities in PFC connectivity persist despite behavioral improvements. Enriched housing rescued brain-derived neurotrophic factor (BDNF) levels in the hippocampus but failed to restore BDNF levels in the PFC, consistent with the persistent deficits observed in prefrontal axonal projections. These findings highlight the focal nature of changes induced by reduction of MeCP2 and by exposure to environmental enrichment and suggest that environmental enrichment starting in adolescence can alleviate behavioral deficits in Mecp2+/− mice without reversing abnormalities in large-scale cortical connectivity.
</summary>
<dc:date>2025-07-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Negotiating With an Aggressive Competitive Negotiator (ACN)</title>
<link href="https://hdl.handle.net/1721.1/163390" rel="alternate"/>
<author>
<name>Rowe, Mary</name>
</author>
<id>https://hdl.handle.net/1721.1/163390</id>
<updated>2025-10-26T03:01:19Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Negotiating With an Aggressive Competitive Negotiator (ACN)
Rowe, Mary
Note: This is a condensed version of material also contained in Mary Rowe's longer-form teaching note, "Notes on Dealing with  an Aggressive Competitive Negotiator (ACN),"  which is also available via DSpace.
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Notes on Dealing with  an Aggressive Competitive Negotiator (ACN) (Especially If You Are Cooperative)</title>
<link href="https://hdl.handle.net/1721.1/163389" rel="alternate"/>
<author>
<name>Rowe, Mary</name>
</author>
<id>https://hdl.handle.net/1721.1/163389</id>
<updated>2025-10-26T03:01:58Z</updated>
<published>2025-09-01T00:00:00Z</published>
<summary type="text">Notes on Dealing with  an Aggressive Competitive Negotiator (ACN) (Especially If You Are Cooperative)
Rowe, Mary
</summary>
<dc:date>2025-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Agentic deep graph reasoning yields self-organizing knowledge networks</title>
<link href="https://hdl.handle.net/1721.1/163388" rel="alternate"/>
<author>
<name>Buehler, Markus J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163388</id>
<updated>2026-04-14T03:24:10Z</updated>
<published>2025-07-31T00:00:00Z</published>
<summary type="text">Agentic deep graph reasoning yields self-organizing knowledge networks
Buehler, Markus J.
We present an agentic, autonomous graph expansion framework that iteratively structures and refines knowledge in situ. Unlike conventional knowledge graph construction methods relying on static extraction or single-pass learning, our approach couples a reasoning-native large language model with a continually updated graph representation. At each step, the system actively generates new concepts and relationships, merges them into a global graph, and formulates subsequent prompts based on its evolving structure. Through this feedback-driven loop, the model organizes information into a scale-free network characterized by hub formation, stable modularity, and bridging nodes that link disparate knowledge clusters. Over hundreds of iterations, new nodes and edges continue to appear without saturating, while centrality measures and shortest path distributions evolve to yield increasingly distributed connectivity. Applied to materials design problems, we present compositional reasoning experiments to foster knowledge synthesis, yielding cross-domain ideas that transcend rote summarization.
</summary>
<dc:date>2025-07-31T00:00:00Z</dc:date>
</entry>
<entry>
<title>EvenQuads Game and Error-Correcting Codes</title>
<link href="https://hdl.handle.net/1721.1/163387" rel="alternate"/>
<author>
<name>Byrapuram, Nikhil</name>
</author>
<author>
<name>Choi, Hwiseo</name>
</author>
<author>
<name>Ge, Adam</name>
</author>
<author>
<name>Ge, Selena</name>
</author>
<author>
<name>Lee, Sylvia Z.</name>
</author>
<author>
<name>Liang, Evin</name>
</author>
<author>
<name>Mandal, Rajarshi</name>
</author>
<author>
<name>Oki, Aika</name>
</author>
<author>
<name>Wu, Daniel</name>
</author>
<author>
<name>Yang, Michael</name>
</author>
<author>
<name>Khovanova, Tanya</name>
</author>
<id>https://hdl.handle.net/1721.1/163387</id>
<updated>2026-04-14T03:24:10Z</updated>
<published>2025-08-22T00:00:00Z</published>
<summary type="text">EvenQuads Game and Error-Correcting Codes
Byrapuram, Nikhil; Choi, Hwiseo; Ge, Adam; Ge, Selena; Lee, Sylvia Z.; Liang, Evin; Mandal, Rajarshi; Oki, Aika; Wu, Daniel; Yang, Michael; Khovanova, Tanya
EvenQuads is a new card game that is a generalization of the SET game, where each card is characterized by three attributes, each taking four possible values. Four cards form a quad when, for each attribute, the values are the same, all different, or half and half. For any ℓ cards selected from the deck of EvenQuads, it is possible to construct an error-correcting linear binary code of length ℓ and Hamming distance 4, where quads correspond to codewords of weight 4. Using error-correcting codes, we calculate the number of possible quads that can be formed with up to 8 cards. We also estimate the number of cards that do not contain quads for decks of different sizes. In addition, we discuss properties of error-correcting codes built on semimagic, magic, and strongly magic quad squares. This highlights a rich interplay between recreational mathematics games and coding theory and encourages others to explore similar combinatorial games for hidden connections!
</summary>
<dc:date>2025-08-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Machine Learning Applications Enabling Fusion Energy: Recent Developments</title>
<link href="https://hdl.handle.net/1721.1/163386" rel="alternate"/>
<author>
<name>Rea, Cristina</name>
</author>
<id>https://hdl.handle.net/1721.1/163386</id>
<updated>2025-10-25T03:09:08Z</updated>
<published>2025-09-03T00:00:00Z</published>
<summary type="text">Machine Learning Applications Enabling Fusion Energy: Recent Developments
Rea, Cristina
Over the last few years, machine learning helped to develop advanced capabilities for fusion energy over a broad range of domains. This includes advanced algorithms to extract information from fusion diagnostics, enhanced algorithms for plasma state estimation and control, accelerated simulation tools to improve predictive capabilities, and expanded modeling capabilities for fusion materials design. This topical collection covers recent developments in machine learning applied research further enabling the path to fusion energy; in particular it covers a wide breadth of fusion subfields – from inertial confinement fusion, to magnetically confined plasma, including high temperature superconducting magnet design and optimization. This editorial summarizes the collection while also providing a critical outlook on how machine learning can be used in the future to accelerate the development of fusion energy as a reliable energy source.
</summary>
<dc:date>2025-09-03T00:00:00Z</dc:date>
</entry>
<entry>
<title>Synthesis‐Related Nanoscale Defects in Mo‐Based Janus Monolayers Revealed by Cross‐Correlated AFM and TERS Imaging</title>
<link href="https://hdl.handle.net/1721.1/163385" rel="alternate"/>
<author>
<name>Zhang, Tianyi</name>
</author>
<author>
<name>Krayev, Andrey</name>
</author>
<author>
<name>Yang, Tilo H</name>
</author>
<author>
<name>Mao, Nannan</name>
</author>
<author>
<name>Hoang, Lauren</name>
</author>
<author>
<name>Wang, Zhien</name>
</author>
<author>
<name>Liu, Hongwei</name>
</author>
<author>
<name>Peng, Yu‐Ren</name>
</author>
<author>
<name>Zhu, Yunyue</name>
</author>
<author>
<name>Zheng, Xudong</name>
</author>
<author>
<name>Isotta, Eleonora</name>
</author>
<author>
<name>Kira, Maria E</name>
</author>
<author>
<name>Righi, Ariete</name>
</author>
<author>
<name>Pimenta, Marcos A</name>
</author>
<author>
<name>Chueh, Yu‐Lun</name>
</author>
<author>
<name>Pop, Eric</name>
</author>
<author>
<name>Mannix, Andrew J</name>
</author>
<author>
<name>Kong, Jing</name>
</author>
<id>https://hdl.handle.net/1721.1/163385</id>
<updated>2026-04-14T03:26:46Z</updated>
<published>2025-08-08T00:00:00Z</published>
<summary type="text">Synthesis‐Related Nanoscale Defects in Mo‐Based Janus Monolayers Revealed by Cross‐Correlated AFM and TERS Imaging
Zhang, Tianyi; Krayev, Andrey; Yang, Tilo H; Mao, Nannan; Hoang, Lauren; Wang, Zhien; Liu, Hongwei; Peng, Yu‐Ren; Zhu, Yunyue; Zheng, Xudong; Isotta, Eleonora; Kira, Maria E; Righi, Ariete; Pimenta, Marcos A; Chueh, Yu‐Lun; Pop, Eric; Mannix, Andrew J; Kong, Jing
2D Janus transition metal dichalcogenides (TMDs) are promising candidatesfor various applications including non-linear optics, energy harvesting, andcatalysis. These materials are usually synthesized via chemical conversionof pristine TMDs. Nanometer-scale characterization of the obtained Janusmaterials’ morphology and local composition is crucial for both the synthesisoptimization and the future device applications. In this work, we present theresults of cross-correlated atomic force microscopy (AFM) and tip-enhancedRaman spectroscopy (TERS) study of Janus monolayers synthesizedby the hydrogen plasma-assisted chemical conversion of MoSe 2 andMoS2 . We demonstrate that the choice of both the growth substrate and thestarting TMD inﬂuences the residual strain, thereby shaping the nanoscalemorphology of the resulting Janus material. Furthermore, by employingTERS imaging, we show the presence of nanoscale islands (≈20 nm across)of MoSe 2 - Mo SSe (MoS2 -MoSeS ) vertical heterostructures originating from thebilayer nanoislands in the precursor monolayer crystals. The understanding ofthe origins of nanoscale defects in Janus TMDs revealed in this study can helpwith further optimization of the Janus conversion process towards uniformand wrinkle-/crack-free Janus materials. Moreover, this work shows thatcross-correlated AFM and TERS imaging is a powerful and accessible methodfor studying nanoscale composition and defects in Janus TMD monolayers.
</summary>
<dc:date>2025-08-08T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Kigali story, the Singapore model, and rights to the city</title>
<link href="https://hdl.handle.net/1721.1/163384" rel="alternate"/>
<author>
<name>Fischer, Michael MJ</name>
</author>
<id>https://hdl.handle.net/1721.1/163384</id>
<updated>2026-04-14T03:26:48Z</updated>
<published>2025-08-05T00:00:00Z</published>
<summary type="text">The Kigali story, the Singapore model, and rights to the city
Fischer, Michael MJ
Three recent ethnographies of Kigali's urban planning and development provide a welcome addition to a long tradition of such ethnographies, including Lisa Redfield Peattie's famous fieldwork in the planning of Ciudad Guayana (1968; 1987), Grace Goodell's ethnographic account of the disjunction between planning offices in Tehran and the urban settlements (sharaks) of the Khuzistan Development Project modelled on the Tennessee Vally Authority (1986), and Gökce Günel's ethnographic analysis of the disjunction between plans for, and implementation of, Mazdar City and Mazdar Institute in Abu Dhabi (2019).
</summary>
<dc:date>2025-08-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Pressurized plankton observatory offers a new window into deep‐sea larval behavior</title>
<link href="https://hdl.handle.net/1721.1/163383" rel="alternate"/>
<author>
<name>Zúñiga Mouret, Rodrigo</name>
</author>
<author>
<name>Hourdez, Stéphane</name>
</author>
<author>
<name>Curran, Molly</name>
</author>
<author>
<name>DiBenedetto, Michelle H.</name>
</author>
<author>
<name>Mills, Susan W.</name>
</author>
<author>
<name>Vetriani, Costantino</name>
</author>
<author>
<name>Arellano, Shawn M.</name>
</author>
<author>
<name>Weston, Johanna N. J.</name>
</author>
<author>
<name>Dykman, Lauren N.</name>
</author>
<author>
<name>Best, Ayinde C.</name>
</author>
<author>
<name>Pires, Anthony</name>
</author>
<author>
<name>Mullineaux, Lauren S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163383</id>
<updated>2026-04-14T03:26:45Z</updated>
<published>2025-07-23T00:00:00Z</published>
<summary type="text">Pressurized plankton observatory offers a new window into deep‐sea larval behavior
Zúñiga Mouret, Rodrigo; Hourdez, Stéphane; Curran, Molly; DiBenedetto, Michelle H.; Mills, Susan W.; Vetriani, Costantino; Arellano, Shawn M.; Weston, Johanna N. J.; Dykman, Lauren N.; Best, Ayinde C.; Pires, Anthony; Mullineaux, Lauren S.
The High-Pressure Plankton Observatory (HiPPO) is designed to quantify motions of zooplankton for behavioral study, including swimming and metabolic responses to environmental perturbations. It builds on prior chamber designs while filling gaps in capability for resolving orientation of small (&lt; 1 mm) plankton, tracking their movements over ecologically relevant spatial scales, and recording in flow-through conditions on a vessel at sea. The HiPPO chamber has a direct light path for silhouette imaging of zooplankton as they move vertically and horizontally across a 3.56 cm diameter viewing area. Seawater forced by a high-performance liquid chromatography pump is exchanged continuously through the chamber, but flushing of zooplankton is prevented by fine mesh at the ports. A high-resolution camera/computer setup enables sustained imaging of plankton motions for quantitative analysis. Application of HiPPO to an investigation of larval behavior of deep-sea hydrothermal vent species revealed swimming behaviors similar to those of shallow-water species, including upward and downward helices, meandering, and short hovers. In conditions with microbial biofilm (a potential settlement cue) on a 2024 expedition, vent larvae unexpectedly swam rapidly upward in tight helices at velocities (0.15 cm s−1) higher than those observed in prior experiments with no biofilm (0.03 cm s−1). Many factors varied between the 2024 and earlier trials, so the difference cannot be attributed with certainty to a cue response. This study describes key new features of HiPPO and demonstrates the system's ability to document novel zooplankton behavior.
</summary>
<dc:date>2025-07-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>Social-ecological system approaches for water resources management</title>
<link href="https://hdl.handle.net/1721.1/163382" rel="alternate"/>
<author>
<name>Gain, Animesh K.</name>
</author>
<author>
<name>Hossain, Sarwar</name>
</author>
<author>
<name>Benson, David</name>
</author>
<author>
<name>Di Baldassarre, Giuliano</name>
</author>
<author>
<name>Giupponi, Carlo</name>
</author>
<author>
<name>Huq, Nazmul</name>
</author>
<id>https://hdl.handle.net/1721.1/163382</id>
<updated>2026-04-14T03:26:47Z</updated>
<published>2020-06-18T00:00:00Z</published>
<summary type="text">Social-ecological system approaches for water resources management
Gain, Animesh K.; Hossain, Sarwar; Benson, David; Di Baldassarre, Giuliano; Giupponi, Carlo; Huq, Nazmul
In the era of the Anthropocene, understanding the dynamic interactions between humans andwater is crucial for supporting both human well-being and the sustainable management ofresources. The current water management challenges are inherently unpredictable and difficultto control. Social-ecological systems (SESs) approaches explicitly recognize the connections andfeedbacks between human and natural systems. For addressing the complex challenges of theAnthropocene, consideration of SES attributes such as causality (or interdependence), feedback,non-linearity, heterogeneity, and cross-scale dynamics is important. In addition, innovative quali-tative and quantitative methods such as Bayesian networks, agent-based modelling, systemdynamics, network analysis, multicriteria analysis, integrated assessment and role-play gameshave recently been used in SES research. The overall goal of this review is to gauge the extentto which SES attributes and methods are considered within the current interdisciplinary waterparadigm. The paper therefore develops the normative theoretical characteristics of SES in termsof its key attributes (i.e. causality, feedback, heterogeneity, nonlinearity, and cross-scale dynamics)incorporated in the water paradigm approaches. The paper then compares the methods appliedin the interdisciplinary water paradigm and examines how they can complement each other.Finally, the paper reflects back on the usefulness of SES attributes and methods for assessing theinterdisciplinary water paradigm and makes recommendations for future research.
</summary>
<dc:date>2020-06-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantifying and improving the optical performance of the laser ablation aerosol particle time of flight mass spectrometer (LAAPToF) instrument</title>
<link href="https://hdl.handle.net/1721.1/163381" rel="alternate"/>
<author>
<name>Zawadowicz, Maria A</name>
</author>
<author>
<name>Lance, Sara</name>
</author>
<author>
<name>Jayne, John T</name>
</author>
<author>
<name>Croteau, Philip</name>
</author>
<author>
<name>Worsnop, Douglas R</name>
</author>
<author>
<name>Mahrt, Fabian</name>
</author>
<author>
<name>Leisner, Thomas</name>
</author>
<author>
<name>Cziczo, Daniel J</name>
</author>
<id>https://hdl.handle.net/1721.1/163381</id>
<updated>2026-04-14T03:26:44Z</updated>
<published>2020-02-21T00:00:00Z</published>
<summary type="text">Quantifying and improving the optical performance of the laser ablation aerosol particle time of flight mass spectrometer (LAAPToF) instrument
Zawadowicz, Maria A; Lance, Sara; Jayne, John T; Croteau, Philip; Worsnop, Douglas R; Mahrt, Fabian; Leisner, Thomas; Cziczo, Daniel J
Single particle mass spectrometer (SPMS) instruments have been used for in-situ chemicalcharacterization of atmospheric aerosols, both in the field and laboratory, for over two deca-des. SPMSs typically combine precise optical particle sizing with laser desorption and ioniza-tion followed by time of flight mass spectrometry. Among the advantages of SPMSs overother aerosol chemistry measurement techniques are their single particle resolution andhigh sensitivity to trace chemical species. The AeroMegt Laser Ablation Aerosol ParticleTime of Flight Mass Spectrometer (LAAPToF) is a commercially available member of thisinstrument class, aiming for a compact size and simplicity for the end user. This articlequantifies the performance of LAAPToF with an emphasis on optical counting efficiency.Recommendations for improving detection compared to the base LAAPToF hardware aredescribed. Our results show that changes to the optical detection scheme can lead to overtwo orders of magnitude improvement in optical counting efficiency in the size range500–2000 nm vacuum aerodynamic diameter. We also present mass spectral performancefor characterizing atmospherically relevant particles in a comparison to a current SPMSdesign, the Particle Analysis by Laser Mass Spectrometry.
</summary>
<dc:date>2020-02-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Expression of endogenous Anopheles gambiae microRNAs using an Anopheles gambiae densovirus (AgDNV) intronic expression system</title>
<link href="https://hdl.handle.net/1721.1/163380" rel="alternate"/>
<author>
<name>Johnson, Rebecca M.</name>
</author>
<author>
<name>Metz, Hillery C.</name>
</author>
<author>
<name>Suzuki, Yasutsugu</name>
</author>
<author>
<name>McLean, Kyle J.</name>
</author>
<author>
<name>Rasgon, Jason L.</name>
</author>
<id>https://hdl.handle.net/1721.1/163380</id>
<updated>2026-04-14T03:24:05Z</updated>
<published>2025-08-19T00:00:00Z</published>
<summary type="text">Expression of endogenous Anopheles gambiae microRNAs using an Anopheles gambiae densovirus (AgDNV) intronic expression system
Johnson, Rebecca M.; Metz, Hillery C.; Suzuki, Yasutsugu; McLean, Kyle J.; Rasgon, Jason L.
Background Anopheles gambiae densovirus (AgDNV) is a highly species-specific parvovirus that reaches high titers in adult Anopheles gambiae mosquitoes with few transcriptomic effects and minimal significant fitness effects. Given these characteristics, AgDNV has been proposed as a viral vector for basic research and mosquito control. Previous work created an AgDNV co-expression system with a wild-type AgDNV helper plasmid and a transducing plasmid expressing enhanced green fluorescent protein (EGFP) that can be used to co-transfect cells to generate infectious recombinant transducing AgDNV virions. Generated virions infect the An. gambiae midgut, fat body, and ovaries, yet this viral vector system is limited in the size of transgenes that can be expressed due to capsid packaging limitations. Methods Considering these size constraints, we created an artificial intron within the EGFP gene of the transducing construct that can express small pieces of genetic material such as microRNAs (miRNAs), microRNA sponges, or other small sequences. Placement of this intron in EGFP created a fluorescent reporter such that incorrect splicing produces a frameshift mutation in EGFP and an early stop codon, whereas correct splicing results in normal EGFP expression and co-transcription of the intronic genetic cargo. A selection of miRNAs with predicted or demonstrated importance in mosquito immunity and reproduction with expression localized to the fat body or ovaries were chosen as intronic cargo. Construct expression and splicing was evaluated, and the impact of miRNA expression on putative miRNA targets was measured in vitro and in vivo. Results The created intron was correctly spliced in cells and mosquitoes; however, miRNA delivery resulted in inconsistent changes to miRNA and predicted target gene transcript levels—possibly due to organ-specific miRNA expression or inaccurate putative target predictions leading to miRNA–target gene sequence mismatch. Conclusions Although our results on target gene expression were inconsistent, with optimization this viral vector and developed intron have potential as an expression tool within An. gambiae mosquitoes or cell lines.
</summary>
<dc:date>2025-08-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Advanced Modeling and Microstructural Insights into the Hot Deformation Behavior of Fe–11Al–5Mn–1Nb–1C Low-Density Steel</title>
<link href="https://hdl.handle.net/1721.1/163379" rel="alternate"/>
<author>
<name>Mahanta, Bashista K.</name>
</author>
<author>
<name>Rawat, Pankaj</name>
</author>
<author>
<name>Bhan, Sumit</name>
</author>
<author>
<name>Roy, Swagata</name>
</author>
<id>https://hdl.handle.net/1721.1/163379</id>
<updated>2026-04-14T03:24:31Z</updated>
<published>2025-05-18T00:00:00Z</published>
<summary type="text">Advanced Modeling and Microstructural Insights into the Hot Deformation Behavior of Fe–11Al–5Mn–1Nb–1C Low-Density Steel
Mahanta, Bashista K.; Rawat, Pankaj; Bhan, Sumit; Roy, Swagata
The hot deformation behavior of Fe–11Al–5Mn–1Nb–1C low-density steel was investigated using a GLEEBLE 3800R thermomechanical simulator across a temperature range of 900–1200 ℃ and strain rates of 1–0.001 s−1. An Arrhenius-type constitutive model was developed to predict flow stress during deformation, alongside a bilayer evolutionary neural network (EvoNN) model based on an artificial neural network (ANN) approach. The EvoNN model demonstrated higher prediction accuracy than the constitutive model. Microstructural analysis revealed a ferritic matrix with kappa carbide as a secondary phase at 900 and 1000 ℃, while at 1100 and 1200 ℃, a dual-phase structure (ferrite + austenite) with fine kappa carbides at the phase interface was observed. NbC particles were consistently present in all hot compressed samples. Partial dynamic recrystallization (DRX) occurred at 900 and 1000 ℃, whereas more extensive DRX was observed at 1100 and 1200 ℃. Grain coarsening was evident at lower strain rates, increasing as the strain rate decreased. Fine NbC particles and kappa carbides pinned grain boundaries, potentially delaying DRX onset, while coarse NbC particles appeared to enhance particle-stimulated nucleation (PSN), introducing complexity to DRX dynamics and contributing to model discrepancies in the constitutive and EvoNN model.
</summary>
<dc:date>2025-05-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Three-pion Bose-Einstein correlations measured in proton-proton collisions</title>
<link href="https://hdl.handle.net/1721.1/163378" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163378</id>
<updated>2026-04-14T03:24:06Z</updated>
<published>2025-08-21T00:00:00Z</published>
<summary type="text">Three-pion Bose-Einstein correlations measured in proton-proton collisions
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.
A study on the Bose-Einstein correlations for triplets of same-sign pions is presented. The analysis is performed using proton-proton collisions at a centre-of-mass energy of s = 7 TeV, recorded by the LHCb experiment, corresponding to an integrated luminosity of 1.0 fb−1. For the first time, the results are interpreted in the core-halo model. The parameters of the model are determined in regions of charged-particle multiplicity. This measurement provides insight into the nature of hadronisation in terms of coherence, being consistent with the presence of coherent emission of pions.
</summary>
<dc:date>2025-08-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Search for dark matter produced in association with one or two top quarks in proton-proton collisions at √s = 13 TeV</title>
<link href="https://hdl.handle.net/1721.1/163377" rel="alternate"/>
<author>
<name>Chekhovsky, V.</name>
</author>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Makarenko, V.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Benato, L.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<id>https://hdl.handle.net/1721.1/163377</id>
<updated>2026-04-14T03:24:08Z</updated>
<published>2025-08-12T00:00:00Z</published>
<summary type="text">Search for dark matter produced in association with one or two top quarks in proton-proton collisions at √s = 13 TeV
Chekhovsky, V.; Hayrapetyan, A.; Makarenko, V.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Benato, L.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.
A search is performed for dark matter (DM) produced in association with a single top quark or a pair of top quarks using the data collected with the CMS detector at the LHC from proton-proton collisions at a center-of-mass energy of 13 TeV, corresponding to 138 fb−1 of integrated luminosity. An excess of events with a large imbalance of transverse momentum is searched for across 0, 1 and 2 lepton final states. Novel multivariate techniques are used to take advantage of the differences in kinematic properties between the two DM production mechanisms. No significant deviations with respect to the standard model predictions are observed. The results are interpreted considering a simplified model in which the mediator is either a scalar or pseudoscalar particle and couples to top quarks and to DM fermions. Axion-like particles that are coupled to top quarks and DM fermions are also considered. Expected exclusion limits of 410 and 380 GeV for scalar and pseudoscalar mediator masses, respectively, are set at the 95% confidence level. A DM particle mass of 1 GeV is assumed, with mediator couplings to fermions and DM particles set to unity. A small signal-like excess is observed in data, with the largest local significance observed to be 1.9 standard deviations for the 150 GeV pseudoscalar mediator hypothesis. Because of this excess, mediator masses are only excluded below 310 (320) GeV for the scalar (pseudoscalar) mediator. The results are also translated into model-independent 95% confidence level upper limits on the visible cross section of DM production in association with top quarks, ranging from 1 pb to 0.02 pb.
</summary>
<dc:date>2025-08-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>A parametric approach to plot-based urban design: A climate-responsive algorithmic control for the generation of urban block</title>
<link href="https://hdl.handle.net/1721.1/163376" rel="alternate"/>
<author>
<name>Çalışkan, Olgu</name>
</author>
<author>
<name>Akay, Mert</name>
</author>
<id>https://hdl.handle.net/1721.1/163376</id>
<updated>2026-04-14T03:26:12Z</updated>
<published>2025-10-17T00:00:00Z</published>
<summary type="text">A parametric approach to plot-based urban design: A climate-responsive algorithmic control for the generation of urban block
Çalışkan, Olgu; Akay, Mert
In modern urbanism, (re)production of urban land predominantly relies on large parcels through intensive capital investments. Such a mainstream significantly shapes the overall urban form, subsequently influencing the quality of life through the perceived characteristics of the form and program of the planned districts. Consequently, critical urban design theory increasingly prioritizes the plot as the fundamental unit of future urban development. While ‘plot-based urbanism’ presents a responsive approach to this issue, there remains a notable gap in systematic methodologies that can be universally applied across different contexts. In this paper, the authors propose an algorithmic framework that would be employed as a design control tool based on the associative logic of plot-based urban formation. The model framework comprises three steps: (1) plot layout generation, (2) building configuration, and (3) incremental formation of the block fabric. The applied model demonstrates the compositional variation and coherence within the urban block while concurrently optimizing the climatic performance of the emerging fabric.
</summary>
<dc:date>2025-10-17T00:00:00Z</dc:date>
</entry>
<entry>
<title>Assessing uncertainties in parton showers at double logarithmic accuracy for jet quenching studies</title>
<link href="https://hdl.handle.net/1721.1/163375" rel="alternate"/>
<author>
<name>Andres, Carlota</name>
</author>
<author>
<name>Apolinário, Liliana</name>
</author>
<author>
<name>Armesto, Néstor</name>
</author>
<author>
<name>Cordeiro, André</name>
</author>
<author>
<name>Dominguez, Fabio</name>
</author>
<author>
<name>Milhano, José G.</name>
</author>
<id>https://hdl.handle.net/1721.1/163375</id>
<updated>2026-04-14T03:24:08Z</updated>
<published>2025-08-20T00:00:00Z</published>
<summary type="text">Assessing uncertainties in parton showers at double logarithmic accuracy for jet quenching studies
Andres, Carlota; Apolinário, Liliana; Armesto, Néstor; Cordeiro, André; Dominguez, Fabio; Milhano, José G.
We present a systematic study of how different choices of ordering and phase-space constraints in parton showers affect the space-time structure of vacuum parton cascades and their interface with jet quenching models. Using a simplified Monte Carlo shower implemented at double logarithmic accuracy, we analyse variations in emission patterns and resulting phase-space arising from three ordering variables: inverse formation time, invariant mass, and opening angle. These are coupled with two kinematic reconstruction schemes defined by different phase-space constraints. We show that, while global features are relatively stable, differences emerge in the temporal evolution of the cascade. To probe the impact of these differences, we introduce a simplified model for in-medium energy loss based on formation time and colour decoherence, enabling us to evaluate the sensitivity of quenching observables to the underlying space-time structure of the vacuum shower. We further quantify the role of time-ordering violations and propose strategies to preserve a consistent space-time interpretation. Lastly, we explore a range of alternative quenching models confirming the robustness of our conclusions. Our findings highlight the importance of maintaining a coherent space-time structure in parton shower algorithms when modelling jet propagation in an extended QCD medium, as this structure becomes a physically meaningful and testable component of the jet itself.
</summary>
<dc:date>2025-08-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Caribbean Creep meets Chesapeake Creep: marine bioinvasions and community shifts along the Mid-Atlantic Coast, USA</title>
<link href="https://hdl.handle.net/1721.1/163373" rel="alternate"/>
<author>
<name>Fowler, Amy E.</name>
</author>
<author>
<name>Blakeslee, April M. H.</name>
</author>
<author>
<name>Davinack, Andrew</name>
</author>
<author>
<name>Aguilar, Robert</name>
</author>
<author>
<name>Andersen, Miranda</name>
</author>
<author>
<name>Benadon, Clara</name>
</author>
<author>
<name>Choong, Henry H. C.</name>
</author>
<author>
<name>Green-Gavrielidis, Lindsay</name>
</author>
<author>
<name>Greenberg, Sarah R.</name>
</author>
<author>
<name>Hartshorn, El</name>
</author>
<author>
<name>Hobbs, Niels-Viggo</name>
</author>
<author>
<name>Labbe, Sara</name>
</author>
<author>
<name>Larson, Kristen</name>
</author>
<id>https://hdl.handle.net/1721.1/163373</id>
<updated>2026-04-14T03:26:44Z</updated>
<published>2025-08-18T00:00:00Z</published>
<summary type="text">Caribbean Creep meets Chesapeake Creep: marine bioinvasions and community shifts along the Mid-Atlantic Coast, USA
Fowler, Amy E.; Blakeslee, April M. H.; Davinack, Andrew; Aguilar, Robert; Andersen, Miranda; Benadon, Clara; Choong, Henry H. C.; Green-Gavrielidis, Lindsay; Greenberg, Sarah R.; Hartshorn, El; Hobbs, Niels-Viggo; Labbe, Sara; Larson, Kristen
The Mid-Atlantic waters of North America are warming faster than &gt; 90% of other global oceans, leading to significant increases in bottom water temperatures and influencing shifts in marine community structure. Given this modern-day scenario of significant community shifts over space and time, baseline surveys of species diversity are increasingly valuable. Therefore, we performed the first-ever marine bioinvasions Rapid Assessment Survey (RAS) along the Mid-Atlantic waters of the United States in June 2023, focused on marina floating pontoons in Virginia, Maryland, Delaware, and New Jersey. We recorded 29 non-indigenous, 16 cryptogenic, and 10 species that have expanded their ranges in the mid-Atlantic. Seven of these 10 species have expanded northwards from southern locations in the Caribbean (“Caribbean Creep”) or the western Atlantic (“Chesapeake Creep”), and three have expanded southwards. Five non-indigenous species (NIS) were found at more than 60% of the 10 sampled sites: the bryozoans Bugula neritina, Schizoporella pungens, Tricellaria inopinata, macroalgae Codium fragile subsp. fragile, and the sea anemone Aiptasiogeton eruptaurantia. We did not document any new nonindigenous species not already recorded on the Western Atlantic coast. All 10 communities were distinctly different, and species dominance varied by latitude and by site. This first-ever RAS of the Mid-Atlantic waters of the United States provides critical insight into how marine communities have been and are changing as a result of colonization by NIS, including those that have expanded their ranges as a result of human-induced climate change.
</summary>
<dc:date>2025-08-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Observation of the distribution of nuclear magnetization in a molecule</title>
<link href="https://hdl.handle.net/1721.1/163372" rel="alternate"/>
<author>
<name>Wilkins, S. G.</name>
</author>
<author>
<name>Udrescu, S. M.</name>
</author>
<author>
<name>Athanasakis-Kaklamanakis, M.</name>
</author>
<author>
<name>Garcia Ruiz, R. F.</name>
</author>
<author>
<name>Belosevic, I.</name>
</author>
<author>
<name>Berger, R.</name>
</author>
<author>
<name>Bissell, M. L.</name>
</author>
<author>
<name>Breier, A. A.</name>
</author>
<author>
<name>Brinson, A. J.</name>
</author>
<author>
<name>Chrysalidis, K.</name>
</author>
<author>
<name>Cocolios, T. E.</name>
</author>
<author>
<name>de Groote, R. P.</name>
</author>
<author>
<name>Dorne, A.</name>
</author>
<author>
<name>Flanagan, K. T.</name>
</author>
<author>
<name>Franchoo, S.</name>
</author>
<author>
<name>Gaul, K.</name>
</author>
<author>
<name>Geldhof, S.</name>
</author>
<author>
<name>Giesen, T. F.</name>
</author>
<author>
<name>Hanstorp, D.</name>
</author>
<author>
<name>Heinke, R.</name>
</author>
<author>
<name>Isaev, T.</name>
</author>
<author>
<name>Koszorus, A.</name>
</author>
<author>
<name>Kujanpa, S.</name>
</author>
<author>
<name>Lalanne, L.</name>
</author>
<author>
<name>Neyens, G.</name>
</author>
<author>
<name>Nichols, M.</name>
</author>
<author>
<name>Perrett, H.A.</name>
</author>
<author>
<name>Reilly, J.R.</name>
</author>
<author>
<name>Skripnikov, L. V.</name>
</author>
<author>
<name>Rothe, S.</name>
</author>
<author>
<name>van den Borne, B.</name>
</author>
<author>
<name>Wang, W.</name>
</author>
<author>
<name>Wessolek, J.</name>
</author>
<author>
<name>Yang, X.F.</name>
</author>
<author>
<name>Zulch, C.Z.</name>
</author>
<id>https://hdl.handle.net/1721.1/163372</id>
<updated>2026-04-14T03:26:49Z</updated>
<published>2025-10-23T00:00:00Z</published>
<summary type="text">Observation of the distribution of nuclear magnetization in a molecule
Wilkins, S. G.; Udrescu, S. M.; Athanasakis-Kaklamanakis, M.; Garcia Ruiz, R. F.; Belosevic, I.; Berger, R.; Bissell, M. L.; Breier, A. A.; Brinson, A. J.; Chrysalidis, K.; Cocolios, T. E.; de Groote, R. P.; Dorne, A.; Flanagan, K. T.; Franchoo, S.; Gaul, K.; Geldhof, S.; Giesen, T. F.; Hanstorp, D.; Heinke, R.; Isaev, T.; Koszorus, A.; Kujanpa, S.; Lalanne, L.; Neyens, G.; Nichols, M.; Perrett, H.A.; Reilly, J.R.; Skripnikov, L. V.; Rothe, S.; van den Borne, B.; Wang, W.; Wessolek, J.; Yang, X.F.; Zulch, C.Z.
Rapid progress in the experimental control and interrogation of molecules, combined&#13;
with developments in precise calculations of their structure, are enabling new opportunities in the investigation of nuclear and particle physics phenomena. Molecules&#13;
containing heavy, octupole-deformed nuclei such as radium are of particular interest&#13;
for such studies, offering an enhanced sensitivity to the properties of fundamental particles and interactions. Here, we report precision laser spectroscopy measurements&#13;
and theoretical calculations of the structure of the radioactive radium monofluoride&#13;
molecule, 225Ra19F. Our results allow fine details of the short-range electron-nucleus&#13;
interaction to be revealed, indicating the high sensitivity of this molecule to the distribution of magnetization, currently a poorly constrained nuclear property, within the&#13;
radium nucleus. These results provide a direct and stringent test of the description of&#13;
the electronic wavefunction inside the nuclear volume, highlighting the suitability of&#13;
these molecules to investigate subatomic phenomena.
</summary>
<dc:date>2025-10-23T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Wafold: A Theory of Spacetime Termination Inside Black Holes</title>
<link href="https://hdl.handle.net/1721.1/163371" rel="alternate"/>
<author>
<name>Viaña, Javier</name>
</author>
<id>https://hdl.handle.net/1721.1/163371</id>
<updated>2025-10-23T03:01:55Z</updated>
<published>2025-10-22T00:00:00Z</published>
<summary type="text">The Wafold: A Theory of Spacetime Termination Inside Black Holes
Viaña, Javier
This article introduces a proposal for a novel conceptual interpretation of black holes in which spacetime can terminate on a curvature-triggered hypersurface. When curvature reaches a critical limit, the three-dimensional spatial geometry is proposed to undergo a dimensional compression into a thin, curved boundary identified as the wafold. Beyond this, spacetime no longer continues; the manifold itself comes to an end. All mass-energy and information would then be confined to the wafold, forming a structure consistent with the external Schwarzschild geometry and the Bekenstein-Hawking entropy law. We outline a possible Dimensional Conversion Law that could govern this phenomenon, and discuss the conservation, causal, and thermodynamic implications of the wafold at a conceptual level. This work should be regarded as a hypothesis-generating perspective, not a complete theory. Its purpose is to motivate further mathematical and physical inquiry.
</summary>
<dc:date>2025-10-22T00:00:00Z</dc:date>
</entry>
<entry>
<title>Design and Performance of Metal Hydride Composite Neutron Shields for Compact, High-Power Fusion Reactors</title>
<link href="https://hdl.handle.net/1721.1/163370" rel="alternate"/>
<author>
<name>Fletcher, Jack W</name>
</author>
<author>
<name>Peterson, Ethan E</name>
</author>
<author>
<name>Trelewicz, Jason R</name>
</author>
<author>
<name>Snead, Lance L</name>
</author>
<id>https://hdl.handle.net/1721.1/163370</id>
<updated>2026-04-14T03:26:37Z</updated>
<published>2025-08-04T00:00:00Z</published>
<summary type="text">Design and Performance of Metal Hydride Composite Neutron Shields for Compact, High-Power Fusion Reactors
Fletcher, Jack W; Peterson, Ethan E; Trelewicz, Jason R; Snead, Lance L
We present the process and results of neutronics-driven shielding design using metal and ceramic matrix metal hydride neutron shields within the context of compact, high-power tokamaks. In particular, hafnium hydrides were considered within a matrix of stainless steel or magnesium oxide and contrasted with established and novel fast neutron shielding materials. These shielding materials are found to substantially increase the lifetime of toroidal field magnets made of high-temperature superconductors by a factor of up to 14.5. Specifically, a stainless steel–20% HfH1.7 thermal shield and outer neutron shield, paired with an inner tungsten carbide (WC) shield and toroidal field magnet case and winding pack both doped with 40% HfH1.7 by volume, were found to achieve a 93.1% reduction in peak fast neutron flux to high-temperature superconductor tapes. Simultaneously, this configuration reduced the total mass (and cost) of the neutron shield, as well as the nuclear heating rate of the magnet coil, in comparison to monolithic shields of WC and boron carbide.
</summary>
<dc:date>2025-08-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>GeoConformal Prediction: A Model-Agnostic Framework for Measuring the Uncertainty of Spatial Prediction</title>
<link href="https://hdl.handle.net/1721.1/163369" rel="alternate"/>
<author>
<name>Lou, Xiayin</name>
</author>
<author>
<name>Luo, Peng</name>
</author>
<author>
<name>Meng, Liqiu</name>
</author>
<id>https://hdl.handle.net/1721.1/163369</id>
<updated>2026-04-14T03:26:27Z</updated>
<published>2025-07-01T00:00:00Z</published>
<summary type="text">GeoConformal Prediction: A Model-Agnostic Framework for Measuring the Uncertainty of Spatial Prediction
Lou, Xiayin; Luo, Peng; Meng, Liqiu
Spatial prediction is a fundamental task in geography, providing essential data support for various scenarios.Recent advancements, empowered by the development of geospatial artificial intelligence (GeoAI), haveprimarily focused on improving prediction accuracy while overlooking reliable measurements of predictionuncertainty. Such measures are crucial for enhancing model trustworthiness and supporting responsibledecision-making. To address this issue, we propose a model-agnostic uncertainty assessment method calledGeoConformal Prediction (GeoCP). First, a simulation study is conducted to validate the usefulness ofGeoCP. Then, we applied GeoCP to two classic spatial prediction cases, spatial regression and spatialinterpolation, to evaluate its reliability. For the case of spatial regression, we used XGBoost to predicthousing prices, followed by GeoCP to calculate uncertainty. Our results show that GeoCP achieved acoverage rate of 93.67 percent, whereas bootstrapping methods reached a maximum coverage of 81.00percent after 2,000 runs. We then applied GeoCP for the case of spatial interpolation models. By comparinga GeoAI-based geostatistical model with a traditional geostatistical model (Kriging), we found that theuncertainty obtained from GeoCP aligned closely with the variance in Kriging. Finally, using GeoCP, weanalyzed the sources of uncertainty in spatial prediction. We found that explicitly including local features inAI models can significantly reduce prediction uncertainty, especially in areas with strong local dependence.Our findings suggest that GeoCP holds substantial potential not only for geographic knowledge discovery butalso for guiding the design of future GeoAI models, paving the way for more reliable and interpretablespatial prediction frameworks. The method is implemented in an open-source Python package namedgeoconformal. Key Words: conformal prediction, GeoAI, Kriging, spatial regression, spatial uncertainty.
</summary>
<dc:date>2025-07-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Belief revision revised</title>
<link href="https://hdl.handle.net/1721.1/163368" rel="alternate"/>
<author>
<name>Pearson, Joshua Edward</name>
</author>
<id>https://hdl.handle.net/1721.1/163368</id>
<updated>2026-04-14T03:26:31Z</updated>
<published>2025-07-27T00:00:00Z</published>
<summary type="text">Belief revision revised
Pearson, Joshua Edward
I outline a novel counterexample to the principle ofbelief revision, Anticipation: if both learning &#119890; andlearning not-&#119890; would render belief in &#119901; unjustified, youcannot now be justified in believing &#119901;. If I am right,not only is the leading theory of belief revision false, soare various recently proposed weakenings. I develop anddefend a new theory that correctly predicts the failuresof Anticipation I argue for, predicated on the simpleidea that one is justified in ruling out possibility just incase that possibility is sufficiently improbable.
</summary>
<dc:date>2025-07-27T00:00:00Z</dc:date>
</entry>
<entry>
<title>Incorporating Deep Learning Into System Dynamics: Amortized Bayesian Inference for Scalable Likelihood‐Free Parameter Estimation</title>
<link href="https://hdl.handle.net/1721.1/163367" rel="alternate"/>
<author>
<name>Rahmandad, Hazhir</name>
</author>
<author>
<name>Akhavan, Ali</name>
</author>
<author>
<name>Jalali, Mohammad S</name>
</author>
<id>https://hdl.handle.net/1721.1/163367</id>
<updated>2026-04-14T03:26:52Z</updated>
<published>2025-01-21T00:00:00Z</published>
<summary type="text">Incorporating Deep Learning Into System Dynamics: Amortized Bayesian Inference for Scalable Likelihood‐Free Parameter Estimation
Rahmandad, Hazhir; Akhavan, Ali; Jalali, Mohammad S
Estimating parameters and their credible intervals for complex system dynamics models is challenging but critical to continu-ous model improvement and reliable communication with an increasing fraction of audiences. The purpose of this study is tointegrate Amortized Bayesian Inference (ABI) methods with system dynamics. Utilizing Neural Posterior Estimation (NPE), wetrain neural networks using synthetic data (pairs of ground truth parameters and outcome time series) to estimate parameters ofsystem dynamics models. We apply this method to two example models: a simple Random Walk model and a moderately complexSEIRb model. We show that the trained neural networks can output the posterior for parameters instantly given new unseentime series data. Our analysis highlights the potential of ABI to facilitate a principled, scalable, and likelihood-free inferenceworkflow that enhance the integration of models of complex systems with data. Accompanying code streamlines application todiverse system dynamics models.
</summary>
<dc:date>2025-01-21T00:00:00Z</dc:date>
</entry>
<entry>
<title>Influences of Non‐Oberbeck–Boussinesq Effects on Tracer Transport in Icy Ocean Worlds</title>
<link href="https://hdl.handle.net/1721.1/163366" rel="alternate"/>
<author>
<name>Wang, Shuang</name>
</author>
<author>
<name>Kang, Wanying</name>
</author>
<id>https://hdl.handle.net/1721.1/163366</id>
<updated>2026-04-14T03:26:29Z</updated>
<published>2025-07-14T00:00:00Z</published>
<summary type="text">Influences of Non‐Oberbeck–Boussinesq Effects on Tracer Transport in Icy Ocean Worlds
Wang, Shuang; Kang, Wanying
The subsurface oceans on icy satellites are potentially habitable. To understand their habitability,we need to know how tracers with various lifetimes distribute. Convection is the main vehicle for tracertransport, and we expect convection on icy satellites to differ from regular rotating convection, because aspressure increases, water's thermal expansivity can vary by orders of magnitude or even reverse sign nearfreezing point. Any variation of fluid properties would break the Oberbeck–Boussinesq approximation, leadingto non‐Oberbeck–Boussinesq (NOB) effects, measured by a coefficient ϵ. In this work, we identify twocompeting impacts of NOB effects on tracer transport. The first promotes overall upward tracer transport at ϵ2‐order, while the second enhances transport near the bottom source but inhibits transport further up at ϵ3‐order. Inweakly nonlinear regime, the former effect dominates, causing more tracers reaching the ice shell. While instrongly nonlinear regime, the latter effect dominates, reducing tracer concentrations near the ice shell. Byvarying particle lifetimes, we find that NOB corrections are most pronounced when particle lifetime iscomparable to the timescale of upward tracer transport. Additionally, when NOB effects are strong enough tocreate a stratified layer in the upper part of the ocean, tracer transport into the stratified layer is set by energetics.These effects are expected to prolong the transport timescale of chemical tracers or biosignatures from theseafloor to the ice shell on icy satellites.
</summary>
<dc:date>2025-07-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Single Word Change Is All You Need: Using LLMs to Create Synthetic Training Examples for Text Classifiers</title>
<link href="https://hdl.handle.net/1721.1/163365" rel="alternate"/>
<author>
<name>Xu, Lei</name>
</author>
<author>
<name>Alnegheimish, Sarah</name>
</author>
<author>
<name>Berti‐Equille, Laure</name>
</author>
<author>
<name>Cuesta‐Infante, Alfredo</name>
</author>
<author>
<name>Veeramachaneni, Kalyan</name>
</author>
<id>https://hdl.handle.net/1721.1/163365</id>
<updated>2026-04-14T03:26:26Z</updated>
<published>2025-07-07T00:00:00Z</published>
<summary type="text">Single Word Change Is All You Need: Using LLMs to Create Synthetic Training Examples for Text Classifiers
Xu, Lei; Alnegheimish, Sarah; Berti‐Equille, Laure; Cuesta‐Infante, Alfredo; Veeramachaneni, Kalyan
In text classification, creating an adversarial example means subtly perturbing a few words in a sentence without changing itsmeaning, causing it to be misclassified by a classifier. A concerning observation is that a significant portion of adversarial exam-ples generated by existing methods change only one word. This single-word perturbation vulnerability represents a significantweakness in classifiers, which malicious users can exploit to efficiently create a multitude of adversarial examples. This paperstudies this problem and makes the following key contributions: (1) We introduce a novel metric &#120588; to quantitatively assess a clas-sifier's robustness against single-word perturbation. (2) We present the SP-Attack, designed to exploit the single-word perturbationvulnerability, achieving a higher attack success rate, better preserving sentence meaning, while reducing computation costscompared to state-of-the-art adversarial methods. (3) We propose SP-Defence, which aims to improve &#120588; by applying data augmen-tation in learning. Experimental results on 4 datasets and 2 masked language models show that SP-Defence improves &#120588; by 14.6%and 13.9% and decreases the attack success rate of SP-Attack by 30.4% and 21.2% on two classifiers respectively, and decreasesthe attack success rate of existing attack methods that involve multiple-word perturbation.
</summary>
<dc:date>2025-07-07T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evaluation and Spatial Optimization Model of Urban Medical Resource Distribution Considering Equity and Efficiency</title>
<link href="https://hdl.handle.net/1721.1/163364" rel="alternate"/>
<author>
<name>Yao, Yao</name>
</author>
<author>
<name>Wang, Yujia</name>
</author>
<author>
<name>Liang, Lin</name>
</author>
<author>
<name>Yan, Xiaoqin</name>
</author>
<author>
<name>Dong, Anning</name>
</author>
<author>
<name>Guan, Qingfeng</name>
</author>
<author>
<name>Luo, Peng</name>
</author>
<id>https://hdl.handle.net/1721.1/163364</id>
<updated>2026-04-14T03:26:29Z</updated>
<published>2025-07-05T00:00:00Z</published>
<summary type="text">Evaluation and Spatial Optimization Model of Urban Medical Resource Distribution Considering Equity and Efficiency
Yao, Yao; Wang, Yujia; Liang, Lin; Yan, Xiaoqin; Dong, Anning; Guan, Qingfeng; Luo, Peng
The rapidly increasing demand for medical resources in accelerating urbanization countries is facing the challenge of unequalresource distribution. Despite numerous studies on the siting of medical resources aimed at improving public accessibility andefficiency to these resources, there is comparatively less research focusing on the equity of access to medical resources. Thisstudy establishes a framework that optimizes the distribution of medical resources by considering both equity and efficiency. Weintroduce an optimization allocation model for both equity and efficiency based on the location set coverage problem (LSCP). Themodel combines region growing algorithm and genetic algorithm to optimize site selection for hospitals. Taking Wuhan as thestudy area, the results demonstrate that the optimized service coverage increases by 21.2%, and the number of people served hasreached 87.3%. The hospital bed utilization rate in downtown areas reaches 92.89%, while it exceeds 99% at suburban hospitals.The optimized site selection significantly enhances medical resource utilization efficiency, effectively addressing the resourcedistribution inequity between urban and rural areas. This study offers a novel approach to optimizing medical resource alloca-tion, effectively balancing equity and efficiency, and providing valuable theoretical underpinnings for enhancing medical servicesystems in emerging urban areas.
</summary>
<dc:date>2025-07-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>On the use of high‐density polyethylene bottles for long‐term storage of total alkalinity samples</title>
<link href="https://hdl.handle.net/1721.1/163363" rel="alternate"/>
<author>
<name>Woosley, Ryan J</name>
</author>
<author>
<name>Neithardt, Daina</name>
</author>
<author>
<name>Bruno, Jessica A</name>
</author>
<author>
<name>Lahn, Lou</name>
</author>
<id>https://hdl.handle.net/1721.1/163363</id>
<updated>2026-04-14T03:26:51Z</updated>
<published>2025-06-25T00:00:00Z</published>
<summary type="text">On the use of high‐density polyethylene bottles for long‐term storage of total alkalinity samples
Woosley, Ryan J; Neithardt, Daina; Bruno, Jessica A; Lahn, Lou
Total alkalinity (TA) plays an important role in buffering seawater and determining how much anthropogeniccarbon dioxide the oceans can absorb and mitigate the rise in atmospheric concentrations. Total alkalinity varieswith location, depth, and time making it an important variable needed to quantify and monitor ocean acidiﬁcation,and potentially for ocean alkalinity enhancement interventions. Currently, best practices are to use expensivehigh-quality borosilicate glass bottles for collecting and storing these samples. However, unlike other carbon systemvariables, TA is not affected by gas exchange meaning plastic bottles may be suitable for TA sample storage. Plasticbottles are lighter, cheaper, and less prone to breakage making them easier to handle and ship. Here, we test the suit-ability of high-density polyethylene (HDPE) for collection and long-term storage of TA samples. In two sets of exper-iments, it was determined that HDPE is not suitable for long-term storage of TA samples as there were large changesin TA over time and precision of duplicate samples was very poor. We hypothesize that HDPE plastic is slightlyporous leading to leaching of alkalinity either into or out of the bottle over time impacting the value of the sample.Use of HDPE bottles for TA samples is not recommended for long term sample storage.
</summary>
<dc:date>2025-06-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Adapting temporal preference to scarcity: A role for emotion?</title>
<link href="https://hdl.handle.net/1721.1/163362" rel="alternate"/>
<author>
<name>Blain, Bastien</name>
</author>
<author>
<name>Globig, Laura K.</name>
</author>
<author>
<name>Sharot, Tali</name>
</author>
<id>https://hdl.handle.net/1721.1/163362</id>
<updated>2026-04-14T03:23:59Z</updated>
<published>2025-06-20T00:00:00Z</published>
<summary type="text">Adapting temporal preference to scarcity: A role for emotion?
Blain, Bastien; Globig, Laura K.; Sharot, Tali
A critical optimization problem is how to distribute resource consumption over time. Humans tend to value immediate rewards over equivalent future rewards—a phenomenon called temporal discounting. Such imbalance can lead to poor health, education, and financial decisions. It is also a hurdle for implementing sustainability policies. A major research goal is to identify factors that influence temporal discounting, so that policymakers could develop interventions to correct for this imbalance. One such factor is available resources; scarcity may increase in temporal discounting. Another potential factor is emotion; negative emotions may lead to high temporal discounting. However, emotion and resources are not independent. For example, losing a large sum of money will lead to negative affect. Here, we take advantage of one of the largest global ‘income shocks’ in history, to tease apart the role of emotion and income on temporal discounting. We tested 1,145 individuals as the market was crashing in late March 2020 and unemployment rising and then retested 200 of those individuals as the market was recovering in June 2020. We found that income shock was strongly related to an increase in delay discounting using cross-sectional and longitudinal data. Importantly, this relationship was independent of the negative impact on affect. These findings suggest that, contrary to wide held assumptions, people directly adapt delay discounting to environmental constraints, without the need for input from the affective system. This independence may be adaptive, as affect is a noisy reflection of environmental constraints, which may lead to suboptimal choice.
</summary>
<dc:date>2025-06-20T00:00:00Z</dc:date>
</entry>
<entry>
<title>Shattering in the Ising p-spin glass model</title>
<link href="https://hdl.handle.net/1721.1/163361" rel="alternate"/>
<author>
<name>Gamarnik, David</name>
</author>
<author>
<name>Jagannath, Aukosh</name>
</author>
<author>
<name>Kızıldağ, Eren C.</name>
</author>
<id>https://hdl.handle.net/1721.1/163361</id>
<updated>2026-04-14T03:24:02Z</updated>
<published>2025-09-11T00:00:00Z</published>
<summary type="text">Shattering in the Ising p-spin glass model
Gamarnik, David; Jagannath, Aukosh; Kızıldağ, Eren C.
We study the Ising p-spin glass model for large p. We show that for any inverse temperature ln 2 &lt; β &lt; 2 ln 2 and any large p, the model exhibits shattering: w.h.p. as n → ∞ , there exists exponentially many well-separated clusters such that (a) each cluster has exponentially small Gibbs mass, and (b) the clusters collectively contain all but a vanishing fraction of Gibbs mass. Moreover, these clusters consist of configurations with energy near β . Range of temperatures for which shattering occurs is within the replica symmetric region. To the best of our knowledge, this is the first shattering result regarding the Ising p-spin glass models. Furthermore, we show that for any γ &gt; 0 and any large enough p, the model exhibits an intricate geometrical property known as the multi Overlap Gap Property above the energy value γ 2 ln 2 . Our proofs are elementary, and in particular based on simple applications of the first and the second moment methods.
</summary>
<dc:date>2025-09-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Combined mechanical ventilatory and mechanical circulatory support aids pulmonary vascular state in cardiogenic shock</title>
<link href="https://hdl.handle.net/1721.1/163360" rel="alternate"/>
<author>
<name>Lamberti, Kimberly K.</name>
</author>
<author>
<name>Edelman, Elazer R.</name>
</author>
<author>
<name>Keller, Steven P.</name>
</author>
<id>https://hdl.handle.net/1721.1/163360</id>
<updated>2026-04-14T03:26:11Z</updated>
<published>2025-10-15T00:00:00Z</published>
<summary type="text">Combined mechanical ventilatory and mechanical circulatory support aids pulmonary vascular state in cardiogenic shock
Lamberti, Kimberly K.; Edelman, Elazer R.; Keller, Steven P.
Background Percutaneous ventricular assist devices (pVADs) support patients in circulatory failure and increasingly concomitant respiratory failure. The presence of co-existent lung disease creates a management challenge due to cardiopulmonary interactions, especially when there is simultaneous mechanical ventilation and mechanical circulatory support. Enhanced understanding of the combined effects of these devices is necessary to better inform care for circulatory failure patients. Methods A porcine model of titratable acute cardiogenic shock was used to quantify the effect of pVAD support on cardiac loading states in five intubated animals with positive pressure ventilation and varied intrathoracic pressure. Cardiovascular hemodynamics were assessed across positive end-expiratory pressure (PEEP) ramps in animals in health, health with pVAD, and pVAD-supported cardiogenic shock induced via coronary microembolization. Results This study employed invasive physiological metrics and assessment of right and left ventricular press-volume loops to recreate classic Frank-Starling curves. Increased intrathoracic pressure altered transmural pressure in the ventricles and the pulmonary vasculature and resulted in decreased venous return and stroke volume while increasing end-diastolic pressure consistent with decreased ventricular compliance. In pVAD-supported cardiogenic shock, elevated PEEP enhanced left ventricular output and increased pulmonary vascular compliance in several animals, contrary to traditional decrements observed with elevated PEEP. The right ventricular functional response aligned with these varied responses in pulmonary vascular state. Conclusions These results demonstrate that combined used of cardiopulmonary support devices in cardiogenic shock can create variable responses compared to classic physiological understanding. In pVAD-supported cardiogenic shock, an increase in ventilatory PEEP increased unloading from the heart and improved right ventricular function, counter to traditional findings. This demonstrates that combined use of these technologies could be leveraged to optimize a patient’s volume status in complex shock and provides promise for management of patients with cardiopulmonary failure requiring simultaneous use of mechanical circulatory support and mechanical ventilation.
</summary>
<dc:date>2025-10-15T00:00:00Z</dc:date>
</entry>
<entry>
<title>On Chip-Firing on Undirected Binary Trees</title>
<link href="https://hdl.handle.net/1721.1/163359" rel="alternate"/>
<author>
<name>Inagaki, Ryota</name>
</author>
<author>
<name>Khovanova, Tanya</name>
</author>
<author>
<name>Luo, Austin</name>
</author>
<id>https://hdl.handle.net/1721.1/163359</id>
<updated>2026-04-14T03:23:49Z</updated>
<published>2025-08-18T00:00:00Z</published>
<summary type="text">On Chip-Firing on Undirected Binary Trees
Inagaki, Ryota; Khovanova, Tanya; Luo, Austin
Chip-firing is a combinatorial game played on an undirected graph in which we place chips on vertices and disperse them. We study chip-firing on an infinite binary tree in which we add a self-loop to the root to ensure each vertex has degree 3. A vertex can fire if the number of chips placed on it is at least its degree. In our case, a vertex can fire if it has at least three chips, and it fires by dispersing one chip to each neighbor. Motivated by a 2023 paper by Musiker and Nguyen on this setting of chip-firing, we give an upper bound for the number of stable configurations when we place 2 ℓ - 1 labeled chips at the root. When starting with N chips at the root where N is a positive integer, we determine the number of times each vertex fires when N is not necessarily of the form 2 ℓ - 1 . We also calculate the total number of fires in this case.
</summary>
<dc:date>2025-08-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurement of charged hadron multiplicity in Au+Au collisions at s NN = 200 GeV with the sPHENIX detector</title>
<link href="https://hdl.handle.net/1721.1/163358" rel="alternate"/>
<author>
<name>Abdulhamid, M. I.</name>
</author>
<author>
<name>Acharya, U.</name>
</author>
<author>
<name>Adams, E. R.</name>
</author>
<author>
<name>Adawi, G.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Akiba, Y.</name>
</author>
<author>
<name>Alfred, M.</name>
</author>
<author>
<name>Ali, S.</name>
</author>
<author>
<name>Alsayegh, A.</name>
</author>
<author>
<name>Altaf, S.</name>
</author>
<author>
<name>Amedi, H.</name>
</author>
<author>
<name>Anderson, D. M.</name>
</author>
<author>
<name>Andrieux, V. V.</name>
</author>
<author>
<name>Angerami, A.</name>
</author>
<author>
<name>Applegate, N.</name>
</author>
<author>
<name>Aso, H.</name>
</author>
<author>
<name>Aune, S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163358</id>
<updated>2026-04-14T03:24:04Z</updated>
<published>2025-08-12T00:00:00Z</published>
<summary type="text">Measurement of charged hadron multiplicity in Au+Au collisions at s NN = 200 GeV with the sPHENIX detector
Abdulhamid, M. I.; Acharya, U.; Adams, E. R.; Adawi, G.; Aidala, C. A.; Akiba, Y.; Alfred, M.; Ali, S.; Alsayegh, A.; Altaf, S.; Amedi, H.; Anderson, D. M.; Andrieux, V. V.; Angerami, A.; Applegate, N.; Aso, H.; Aune, S.
The pseudorapidity distribution of charged hadrons produced in Au+Au collisions at a center-of-mass energy of s NN = 200 GeV is measured using data collected by the sPHENIX detector. Charged hadron yields are extracted by counting cluster pairs in the inner and outer layers of the Intermediate Silicon Tracker, with corrections applied for detector acceptance, reconstruction efficiency, combinatorial pairs, and contributions from secondary decays. The measured distributions cover |η| &lt; 1.1 across various centralities, and the average pseudorapidity density of charged hadrons at mid-rapidity is compared to predictions from Monte Carlo heavy-ion event generators. This result, featuring full azimuthal coverage at mid-rapidity, is consistent with previous experimental measurements at the Relativistic Heavy Ion Collider, thereby supporting the broader sPHENIX physics program.
</summary>
<dc:date>2025-08-12T00:00:00Z</dc:date>
</entry>
<entry>
<title>Search for a heavy pseudoscalar Higgs boson decaying to a 125 GeV Higgs boson and a Z boson in final states with two tau and two light leptons in proton-proton collisions at √s = 13 TeV</title>
<link href="https://hdl.handle.net/1721.1/163357" rel="alternate"/>
<author>
<name>Chekhovsky, V.</name>
</author>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Makarenko, V.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Benato, L.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<id>https://hdl.handle.net/1721.1/163357</id>
<updated>2026-04-14T03:26:09Z</updated>
<published>2025-10-09T00:00:00Z</published>
<summary type="text">Search for a heavy pseudoscalar Higgs boson decaying to a 125 GeV Higgs boson and a Z boson in final states with two tau and two light leptons in proton-proton collisions at √s = 13 TeV
Chekhovsky, V.; Hayrapetyan, A.; Makarenko, V.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Benato, L.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.
A search for a heavy pseudoscalar Higgs boson, A, decaying to a 125 GeV Higgs&#13;
boson h and a Z boson is presented. The h boson is identified via its decay to a pair of tau&#13;
leptons, while the Z boson is identified via its decay to a pair of electrons or muons. The&#13;
search targets the production of the A boson via the gluon-gluon fusion process, gg → A,&#13;
and in association with bottom quarks, bb¯A. The analysis uses a data sample corresponding&#13;
to an integrated luminosity of 138 fb−1&#13;
collected with the CMS detector at the CERN LHC&#13;
in proton-proton collisions at a centre-of-mass energy of √&#13;
s = 13 TeV. Constraints are set on&#13;
the product of the cross sections of the A production mechanisms and the A → Zh decay&#13;
branching fraction. The observed (expected) upper limit at 95% confidence level ranges&#13;
from 0.049 (0.060) pb to 1.02 (0.79) pb for the gg → A process and from 0.053 (0.059) pb&#13;
to 0.79 (0.61) pb for the bb¯A process in the probed range of the A boson mass, mA, from&#13;
225 GeV to 1 TeV. The results of the search are used to constrain parameters within the&#13;
M&#13;
125&#13;
h,EFT benchmark scenario of the minimal supersymmetric extension of the standard model.&#13;
Values of tan β below 2.2 are excluded in this scenario at 95% confidence level for all mA&#13;
values in the range from 225 to 350 GeV.
</summary>
<dc:date>2025-10-09T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurements of inclusive and differential cross sections for top quark production in association with a Z boson in proton-proton collisions at s = 13 TeV</title>
<link href="https://hdl.handle.net/1721.1/163356" rel="alternate"/>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<author>
<name>Schieck, J.</name>
</author>
<author>
<name>Schöfbeck, R.</name>
</author>
<author>
<name>Schwarz, D.</name>
</author>
<id>https://hdl.handle.net/1721.1/163356</id>
<updated>2026-04-14T03:26:03Z</updated>
<published>2025-02-26T00:00:00Z</published>
<summary type="text">Measurements of inclusive and differential cross sections for top quark production in association with a Z boson in proton-proton collisions at s = 13 TeV
Hayrapetyan, A.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.; Schieck, J.; Schöfbeck, R.; Schwarz, D.
Measurements are presented of inclusive and differential cross sections for Z boson associated production of top quark pairs ( t t ¯ Z ) and single top quarks (tZq or tWZ). The data were recorded in proton-proton collisions at a center-of-mass energy of 13 TeV, corresponding to an integrated luminosity of 138 fb−1. Events with three or more leptons, electrons or muons, are selected and a multiclass deep neural network is used to separate three event categories, the t t ¯ Z and tWZ processes, the tZq process, and the backgrounds. A profile likelihood approach is used to unfold the differential cross sections, to account for systematic uncertainties, and to determine the correlations between the two signal categories in one global fit. The inclusive cross sections for a dilepton invariant mass between 70 and 110 GeV are measured to be 1.14 ± 0.07 pb for the sum of t t ¯ Z and tWZ, and 0.81 ± 0.10 pb for tZq, in good agreement with theoretical predictions.
</summary>
<dc:date>2025-02-26T00:00:00Z</dc:date>
</entry>
<entry>
<title>Priming agents transiently reduce the clearance of cell-free DNA to improve liquid biopsies</title>
<link href="https://hdl.handle.net/1721.1/163355" rel="alternate"/>
<author>
<name>Martin-Alonso, Carmen</name>
</author>
<author>
<name>Tabrizi, Shervin</name>
</author>
<author>
<name>Xiong, Kan</name>
</author>
<author>
<name>Blewett, Timothy</name>
</author>
<author>
<name>Sridhar, Sainetra</name>
</author>
<author>
<name>Crnjac, Andjela</name>
</author>
<author>
<name>Patel, Sahil</name>
</author>
<author>
<name>An, Zhenyi</name>
</author>
<author>
<name>Bekdemir, Ahmet</name>
</author>
<author>
<name>Shea, Douglas</name>
</author>
<author>
<name>Wang, Shih-Ting</name>
</author>
<author>
<name>Rodriguez-Aponte, Sergio</name>
</author>
<author>
<name>Naranjo, Christopher A</name>
</author>
<author>
<name>Rhoades, Justin</name>
</author>
<author>
<name>Kirkpatrick, Jesse D</name>
</author>
<author>
<name>Fleming, Heather E</name>
</author>
<author>
<name>Amini, Ava P</name>
</author>
<author>
<name>Golub, Todd R</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<author>
<name>Bhatia, Sangeeta N</name>
</author>
<author>
<name>Adalsteinsson, Viktor A</name>
</author>
<id>https://hdl.handle.net/1721.1/163355</id>
<updated>2026-04-14T03:26:39Z</updated>
<published>2024-01-19T00:00:00Z</published>
<summary type="text">Priming agents transiently reduce the clearance of cell-free DNA to improve liquid biopsies
Martin-Alonso, Carmen; Tabrizi, Shervin; Xiong, Kan; Blewett, Timothy; Sridhar, Sainetra; Crnjac, Andjela; Patel, Sahil; An, Zhenyi; Bekdemir, Ahmet; Shea, Douglas; Wang, Shih-Ting; Rodriguez-Aponte, Sergio; Naranjo, Christopher A; Rhoades, Justin; Kirkpatrick, Jesse D; Fleming, Heather E; Amini, Ava P; Golub, Todd R; Love, J Christopher; Bhatia, Sangeeta N; Adalsteinsson, Viktor A
Liquid biopsies enable early detection and monitoring of diseases such as cancer, but their sensitivity remains limited by the scarcity of analytes such as cell-free DNA (cfDNA) in blood. Improvements to sensitivity have primarily relied on enhancing sequencing technology ex vivo. We sought to transiently augment the level of circulating tumor DNA (ctDNA) in a blood draw by attenuating its clearance in vivo. We report two intravenous priming agents given 1 to 2 hours before a blood draw to recover more ctDNA. Our priming agents consist of nanoparticles that act on the cells responsible for cfDNA clearance and DNA-binding antibodies that protect cfDNA. In tumor-bearing mice, they greatly increase the recovery of ctDNA and improve the sensitivity for detecting small tumors.
</summary>
<dc:date>2024-01-19T00:00:00Z</dc:date>
</entry>
<entry>
<title>Vaccine targeting to mucosal lymphoid tissues promotes humoral immunity in the gastrointestinal tract</title>
<link href="https://hdl.handle.net/1721.1/163354" rel="alternate"/>
<author>
<name>Kocabiyik, Ozgun</name>
</author>
<author>
<name>Amlashi, Parastoo</name>
</author>
<author>
<name>Vo, A Lina</name>
</author>
<author>
<name>Suh, Heikyung</name>
</author>
<author>
<name>Rodriguez-Aponte, Sergio A</name>
</author>
<author>
<name>Dalvie, Neil C</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<author>
<name>Andrabi, Raiees</name>
</author>
<author>
<name>Irvine, Darrell J</name>
</author>
<id>https://hdl.handle.net/1721.1/163354</id>
<updated>2026-04-14T03:26:40Z</updated>
<published>2024-05-29T00:00:00Z</published>
<summary type="text">Vaccine targeting to mucosal lymphoid tissues promotes humoral immunity in the gastrointestinal tract
Kocabiyik, Ozgun; Amlashi, Parastoo; Vo, A Lina; Suh, Heikyung; Rodriguez-Aponte, Sergio A; Dalvie, Neil C; Love, J Christopher; Andrabi, Raiees; Irvine, Darrell J
Viruses, bacteria, and parasites frequently cause infections in the gastrointestinal tract, but traditional vaccination strategies typically elicit little or no mucosal antibody responses. Here, we report a strategy to effectively concentrate immunogens and adjuvants in gut-draining lymph nodes (LNs) to induce gut-associated mucosal immunity. We prepared nanoemulsions (NEs) based on biodegradable oils commonly used as vaccine adjuvants, which encapsulated a potent Toll-like receptor agonist and displayed antigen conjugated to their surface. Following intraperitoneal administration, these NEs accumulated in gut-draining mesenteric LNs, priming strong germinal center responses and promoting B cell class switching to immunoglobulin A (IgA). Optimized NEs elicited 10- to 1000-fold higher antigen-specific IgG and IgA titers in the serum and feces, respectively, compared to free antigen mixed with NE, and strong neutralizing antibody titers against severe acute respiratory syndrome coronavirus 2. Thus, robust gut humoral immunity can be elicited by exploiting the unique lymphatic collection pathways of the gut with a lymph-targeting vaccine formulation.
</summary>
<dc:date>2024-05-29T00:00:00Z</dc:date>
</entry>
<entry>
<title>Expansion of tumor-reactive CD8+ T cell clonotypes occurs in the spleen in response to immune checkpoint blockade</title>
<link href="https://hdl.handle.net/1721.1/163353" rel="alternate"/>
<author>
<name>Morgan, Duncan M</name>
</author>
<author>
<name>Horton, Brendan L</name>
</author>
<author>
<name>Bhandarkar, Vidit</name>
</author>
<author>
<name>Van, Richard</name>
</author>
<author>
<name>Dinter, Teresa</name>
</author>
<author>
<name>Zagorulya, Maria</name>
</author>
<author>
<name>Love, J Christopher</name>
</author>
<author>
<name>Spranger, Stefani</name>
</author>
<id>https://hdl.handle.net/1721.1/163353</id>
<updated>2026-04-14T03:26:42Z</updated>
<published>2024-09-13T00:00:00Z</published>
<summary type="text">Expansion of tumor-reactive CD8+ T cell clonotypes occurs in the spleen in response to immune checkpoint blockade
Morgan, Duncan M; Horton, Brendan L; Bhandarkar, Vidit; Van, Richard; Dinter, Teresa; Zagorulya, Maria; Love, J Christopher; Spranger, Stefani
Immune checkpoint blockade (ICB) enhances T cell responses against cancer, leading to long-term&#13;
survival in a fraction of patients. CD8+ T cell differentiation in response to chronic antigen&#13;
stimulation is highly complex and it remains unclear precisely which T cell differentiation states at&#13;
which anatomic sites are critical for the response to ICB. We identified an intermediate-exhausted&#13;
population in the white pulp of the spleen which underwent significant expansion in response&#13;
to ICB and gave rise to the majority of tumor-infiltrating clonotypes. Increased systemic antigen&#13;
perturbed differentiation of this population towards a most circulatory exhausted_KLR state, while&#13;
a lack of cross-presented tumor-antigen blunted its differentiation in the spleen. An analogous&#13;
population of exhausted_KLR CD8+ T cells in human blood samples exhibited diminished tumortrafficking ability. Collectively, our data demonstrate the critical role of antigen density within the&#13;
spleen for the differentiation and expansion of T cell clonotypes in response to ICB.
</summary>
<dc:date>2024-09-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Drell-Yan transverse-momentum spectra at N3LL′ and approximate N4LL with SCETlib</title>
<link href="https://hdl.handle.net/1721.1/163352" rel="alternate"/>
<author>
<name>Billis, Georgios</name>
</author>
<author>
<name>Michel, Johannes K. L.</name>
</author>
<author>
<name>Tackmann, Frank J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163352</id>
<updated>2026-04-14T03:26:06Z</updated>
<published>2025-02-25T00:00:00Z</published>
<summary type="text">Drell-Yan transverse-momentum spectra at N3LL′ and approximate N4LL with SCETlib
Billis, Georgios; Michel, Johannes K. L.; Tackmann, Frank J.
We provide state-of-the-art precision QCD predictions for the fiducial W and Z boson transverse momentum spectra at the LHC at N3LL′ and approximate N4LL in resummed perturbation theory, matched to available O α s 3 fixed-order results. Our predictions consistently combine all information from across the spectrum in a unified way, ranging from the nonperturbative region of small transverse momenta to the fixed-order tail, with an emphasis on estimating the magnitude of residual perturbative uncertainties, and in particular of those related to the matching. Parametric uncertainties related to the strong coupling, the collinear PDFs, and the nonperturbative transverse momentum-dependent (TMD) dynamics are studied in detail. To assess the latter, we explicitly demonstrate how the full complexity of flavor and Bjorken x-dependent TMD dynamics can be captured by a single, effective nonperturbative function for the resonant production of any given vector boson at a given collider. We point out that the cumulative p T Z cross section at the level of precision enabled by our predictions provides strong constraining power for PDF determinations at full N3LO.
</summary>
<dc:date>2025-02-25T00:00:00Z</dc:date>
</entry>
<entry>
<title>Search for a heavy resonance decaying into a Z and a Higgs boson in events with an energetic jet and two electrons, two muons, or missing transverse momentum in proton-proton collisions at √s = 13 TeV</title>
<link href="https://hdl.handle.net/1721.1/163351" rel="alternate"/>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<author>
<name>Schieck, J.</name>
</author>
<author>
<name>Schöfbeck, R.</name>
</author>
<id>https://hdl.handle.net/1721.1/163351</id>
<updated>2026-04-14T03:26:04Z</updated>
<published>2025-02-13T00:00:00Z</published>
<summary type="text">Search for a heavy resonance decaying into a Z and a Higgs boson in events with an energetic jet and two electrons, two muons, or missing transverse momentum in proton-proton collisions at √s = 13 TeV
Hayrapetyan, A.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.; Schieck, J.; Schöfbeck, R.
A search is presented for a heavy resonance decaying into a Z boson and a Higgs (H) boson. The analysis is based on data from proton-proton collisions at a centre-of-mass energy of 13 TeV corresponding to an integrated luminosity of 138 fb−1, recorded with the CMS experiment in the years 2016–2018. Resonance masses between 1.4 and 5 TeV are considered, resulting in large transverse momenta of the Z and H bosons. Final states that result from Z boson decays to pairs of electrons, muons, or neutrinos are considered. The H boson is reconstructed as a single large-radius jet, recoiling against the Z boson. Machine-learning flavour-tagging techniques are employed to identify decays of a Lorentz-boosted H boson into pairs of charm or bottom quarks, or into four quarks via the intermediate H → WW* and ZZ* decays. The analysis targets H boson decays that were not generally included in previous searches using the H → b b ¯ channel. Compared with previous analyses, the sensitivity for high resonance masses is improved significantly in the channel where at most one b quark is tagged.
</summary>
<dc:date>2025-02-13T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurement of the CKM angle γ in B± → DK*(892)± decays</title>
<link href="https://hdl.handle.net/1721.1/163350" rel="alternate"/>
<author>
<name>Aaij, R.</name>
</author>
<author>
<name>Abdelmotteleb, A. S. W.</name>
</author>
<author>
<name>Abellan Beteta, C.</name>
</author>
<author>
<name>Abudinén, F.</name>
</author>
<author>
<name>Ackernley, T.</name>
</author>
<author>
<name>Adefisoye, A. A.</name>
</author>
<author>
<name>Adeva, B.</name>
</author>
<author>
<name>Adinolfi, M.</name>
</author>
<author>
<name>Adlarson, P.</name>
</author>
<author>
<name>Agapopoulou, C.</name>
</author>
<author>
<name>Aidala, C. A.</name>
</author>
<author>
<name>Ajaltouni, Z.</name>
</author>
<author>
<name>Akar, S.</name>
</author>
<author>
<name>Akiba, K.</name>
</author>
<author>
<name>Albicocco, P.</name>
</author>
<author>
<name>Albrecht, J.</name>
</author>
<id>https://hdl.handle.net/1721.1/163350</id>
<updated>2026-04-14T03:26:02Z</updated>
<published>2025-02-18T00:00:00Z</published>
<summary type="text">Measurement of the CKM angle γ in B± → DK*(892)± decays
Aaij, R.; Abdelmotteleb, A. S. W.; Abellan Beteta, C.; Abudinén, F.; Ackernley, T.; Adefisoye, A. A.; Adeva, B.; Adinolfi, M.; Adlarson, P.; Agapopoulou, C.; Aidala, C. A.; Ajaltouni, Z.; Akar, S.; Akiba, K.; Albicocco, P.; Albrecht, J.
Measurements of CP observables and the CKM angle γ are performed in B± → DK*(892)± decays, where D represents a superposition of D0 and D ¯ 0 states, using the LHCb dataset collected during Run 1 (2011–2012) and Run 2 (2015–2018). A study of this channel is presented with the D meson reconstructed in two-body final states K±π∓, K+K− and π+π−; four-body final states K±π∓π±π∓ and π+π−π+π−; and three-body final states K S 0 π + π − and K S 0 K + K − . This analysis includes the first observation of the suppressed B± → [π±K∓]DK*± and B± → [π±K∓π±π∓]DK*± decays. The combined result gives γ = (63 ± 13)°.
</summary>
<dc:date>2025-02-18T00:00:00Z</dc:date>
</entry>
<entry>
<title>Measurement of the t¯tH and tH production rates in the H → bb¯ decay channel using proton-proton collision data at √s = 13 TeV</title>
<link href="https://hdl.handle.net/1721.1/163349" rel="alternate"/>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<author>
<name>Schieck, J.</name>
</author>
<author>
<name>Schöfbeck, R.</name>
</author>
<author>
<name>Schwarz, D.</name>
</author>
<id>https://hdl.handle.net/1721.1/163349</id>
<updated>2026-04-14T03:26:00Z</updated>
<published>2025-02-14T00:00:00Z</published>
<summary type="text">Measurement of the t¯tH and tH production rates in the H → bb¯ decay channel using proton-proton collision data at √s = 13 TeV
Hayrapetyan, A.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.; Schieck, J.; Schöfbeck, R.; Schwarz, D.
An analysis of the production of a Higgs boson (H) in association with a top quark-antiquark pair ( t t ¯ H ) or a single top quark (tH) is presented. The Higgs boson decay into a bottom quark-antiquark pair (H → b b ¯ ) is targeted, and three different final states of the top quark decays are considered, defined by the number of leptons (electrons or muons) in the event. The analysis utilises proton-proton collision data collected at the CERN LHC with the CMS experiment at s = 13 TeV in 2016–2018, which correspond to an integrated luminosity of 138 fb−1. The observed t t ¯ H production rate relative to the standard model expectation is 0.33 ± 0.26 = 0.33 ± 0.17(stat) ± 0.21(syst). Additionally, the t t ¯ H production rate is determined in intervals of Higgs boson transverse momentum. An upper limit at 95% confidence level is set on the tH production rate of 14.6 times the standard model prediction, with an expectation of 19.3 − 6.0 + 9.2 . Finally, constraints are derived on the strength and structure of the coupling between the Higgs boson and the top quark from simultaneous extraction of the t t ¯ H and tH production rates, and the results are combined with those obtained in other Higgs boson decay channels.
</summary>
<dc:date>2025-02-14T00:00:00Z</dc:date>
</entry>
<entry>
<title>Differential cross section measurements for the production of top quark pairs and of additional jets using dilepton events from pp collisions at √s = 13 TeV</title>
<link href="https://hdl.handle.net/1721.1/163348" rel="alternate"/>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Escalante Del Valle, A.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Lechner, L.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<author>
<name>Paulitsch, P.</name>
</author>
<author>
<name>Pitters, F. M.</name>
</author>
<author>
<name>Schieck, J.</name>
</author>
<author>
<name>Schöfbeck, R.</name>
</author>
<id>https://hdl.handle.net/1721.1/163348</id>
<updated>2026-04-14T03:25:58Z</updated>
<published>2025-02-11T00:00:00Z</published>
<summary type="text">Differential cross section measurements for the production of top quark pairs and of additional jets using dilepton events from pp collisions at √s = 13 TeV
Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Escalante Del Valle, A.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Lechner, L.; Liko, D.; Mikulec, I.; Paulitsch, P.; Pitters, F. M.; Schieck, J.; Schöfbeck, R.
Differential cross sections for top quark pair ( t t ¯ ) production are measured in proton-proton collisions at a center-of-mass energy of 13 TeV using a sample of events containing two oppositely charged leptons. The data were recorded with the CMS detector at the CERN Large Hadron Collider and correspond to an integrated luminosity of 138 fb−1. The differential cross sections are measured as functions of kinematic observables of the t t ¯ system, the top quark and antiquark and their decay products, as well as of the number of additional jets in the event. The results are presented as functions of up to three variables and are corrected to the parton and particle levels. When compared to standard model predictions based on quantum chromodynamics at different levels of accuracy, it is found that the calculations do not always describe the observed data. The deviations are found to be largest for the multi-differential cross sections.
</summary>
<dc:date>2025-02-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Search for dark matter produced in association with a pair of bottom quarks in proton-proton collisions at s = 13 TeV</title>
<link href="https://hdl.handle.net/1721.1/163347" rel="alternate"/>
<author>
<name>Hayrapetyan, A.</name>
</author>
<author>
<name>Tumasyan, A.</name>
</author>
<author>
<name>Adam, W.</name>
</author>
<author>
<name>Andrejkovic, J. W.</name>
</author>
<author>
<name>Bergauer, T.</name>
</author>
<author>
<name>Chatterjee, S.</name>
</author>
<author>
<name>Damanakis, K.</name>
</author>
<author>
<name>Dragicevic, M.</name>
</author>
<author>
<name>Hussain, P. S.</name>
</author>
<author>
<name>Jeitler, M.</name>
</author>
<author>
<name>Krammer, N.</name>
</author>
<author>
<name>Li, A.</name>
</author>
<author>
<name>Liko, D.</name>
</author>
<author>
<name>Mikulec, I.</name>
</author>
<author>
<name>Schieck, J.</name>
</author>
<author>
<name>Schöfbeck, R.</name>
</author>
<author>
<name>Schwarz, D.</name>
</author>
<author>
<name>Sonawane, M.</name>
</author>
<id>https://hdl.handle.net/1721.1/163347</id>
<updated>2026-04-14T03:26:01Z</updated>
<published>2025-02-11T00:00:00Z</published>
<summary type="text">Search for dark matter produced in association with a pair of bottom quarks in proton-proton collisions at s = 13 TeV
Hayrapetyan, A.; Tumasyan, A.; Adam, W.; Andrejkovic, J. W.; Bergauer, T.; Chatterjee, S.; Damanakis, K.; Dragicevic, M.; Hussain, P. S.; Jeitler, M.; Krammer, N.; Li, A.; Liko, D.; Mikulec, I.; Schieck, J.; Schöfbeck, R.; Schwarz, D.; Sonawane, M.
A search for dark matter (DM) particles produced in association with bottom quarks is presented. The analysis uses proton-proton collision data at a center-of-mass energy of s = 13 TeV, corresponding to an integrated luminosity of 138 fb−1. The search is performed in a final state with large missing transverse momentum and a pair of jets originating from bottom quarks. No significant excess of data is observed with respect to the standard model expectation. Results are interpreted in the context of a type-II two-Higgs-doublet model with an additional light pseudoscalar (2HDM+a). An upper limit is set on the mass of the lighter pseudoscalar, probing masses up to 260 GeV at 95% confidence level. Sensitivity to the parameter space with the ratio of the vacuum expectation values of the two Higgs doublets, tan β, greater than 15 is achieved, capitalizing on the enhancement of couplings between pseudoscalars and bottom quarks with high tan β.
</summary>
<dc:date>2025-02-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>Boundary terms in string field theory</title>
<link href="https://hdl.handle.net/1721.1/163346" rel="alternate"/>
<author>
<name>Fırat, Atakan H.</name>
</author>
<author>
<name>Mamade, Raji A.</name>
</author>
<id>https://hdl.handle.net/1721.1/163346</id>
<updated>2026-04-14T03:25:59Z</updated>
<published>2025-02-11T00:00:00Z</published>
<summary type="text">Boundary terms in string field theory
Fırat, Atakan H.; Mamade, Raji A.
We supplement the string field theory action with boundary terms to make its variational principle well-posed. Central to our considerations is the violation of the stress-energy tensor conservation in non-compact CFTs due to the boundary terms. This manifests as the failure of the cyclicity of the BRST operator, which encodes the target space integration by parts identities at the level of the worldsheet. Using this failure, we argue that the free closed string field theory action admits a well-posed variational principle upon including an additional boundary contribution. We explicitly work out the resulting action up to the massless level and show that it is related to the expansion of the low-energy effective string action endowed with the Gibbons-Hawking-York term on a flat background. We also discuss the structure of the boundary terms in the interacting theory.
</summary>
<dc:date>2025-02-11T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Structural Approach to Measuring Time-varying Risk&#13;
Aversion</title>
<link href="https://hdl.handle.net/1721.1/163345" rel="alternate"/>
<author>
<name>von Turkovich, Nick</name>
</author>
<id>https://hdl.handle.net/1721.1/163345</id>
<updated>2025-10-22T03:34:36Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">A Structural Approach to Measuring Time-varying Risk&#13;
Aversion
von Turkovich, Nick
Non-homothetic preferences have the potential to rationalize important asset pricing facts including time-varying risk premia and business cycle movements in asset prices (e.g., Campbell and Cochrane (1999)). This paper offers a structural approach to measuring time-varying risk aversion. Motivated by the literature on consumption commitments (e.g., Flavin and Nakagawa (2008), Chetty and Szeidl (2016), Chetty, Sandor, and Szeidl (2017)), I develop a model in which investors have nonseparable preferences over housing and nonhousing consumption, and investors must consume a minimum amount of housing each period. Non-housing consumption is assumed to be flexibly chosen. The key insight is that the intratemporal optimality condition between the two goods reveals information about the surplus consumption ratio, a key variable driving risk aversion. A cointegrating relationship between relative quantities and prices allow us to identify the elasticity of intratemporal substitution and measure surplus housing consumption. Using aggregate U.S. consumption data from 1959 to the present, the measured surplus consumption ratio demonstrates clear business cycle fluctuations, rising during expansions and falling during recessions. Consistent with the theory, this measure also predicts future excess returns.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Decarbonization of Gas Heating in Massachusetts: An Evaluation of Current Trends and Opportunities</title>
<link href="https://hdl.handle.net/1721.1/163344" rel="alternate"/>
<author>
<name>Epstein, Andrew</name>
</author>
<id>https://hdl.handle.net/1721.1/163344</id>
<updated>2025-10-22T03:34:36Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Decarbonization of Gas Heating in Massachusetts: An Evaluation of Current Trends and Opportunities
Epstein, Andrew
The commonwealth of Massachusetts has ambitious decarbonization goals enshrined in law and has been establishing the regulations to achieve them. Through its Department of Public Utilities regulatory rulings, the state has required local gas and electric utilities to pursue decarbonization not only by reducing the emissions of their electric supply but also by actively supporting gas load reduction. The residential heating sector dominates this effort, with programs like MassSave incentivizing customer adoption and now MA DPU 20-80-B&#13;
requiring gas utilities to demonstrate that they have sufficiently evaluated the possibility of non-pipeline alternatives, including but not limited to electrifying customers instead of reinvesting in the gas system for all future gas investments.&#13;
&#13;
This paper looks at a single Massachusetts utility, National Grid, and evaluates where its customers are switching to electric heat and which mechanisms are driving current adoption. It further evaluates where geographically National Grid could invest in electrification instead of replacing gas investments under the new 20-80-B order. In doing so it establishes a model for cost benefit calculations related to prospective NPA projects. This paper then examines the degree to which ongoing electrification efforts are aligned with one another. Finally, this paper explores concerns that the process of electrification might be regressive, leaving behind those who cannot afford to electrify their systems and leaving them to pay ever-increasing prices as the full gas system is paid for through rates from a decreasing population of consumers. In evaluation of such concerns, it determines the geographic correlation between ongoing decarbonization efforts and communities already facing housing burden.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Streamlining Diagnostics of Electrical-Connection-Related Errors in General Assembly Using Augmented Reality Wearables</title>
<link href="https://hdl.handle.net/1721.1/163343" rel="alternate"/>
<author>
<name>Salata, Elizabeth</name>
</author>
<id>https://hdl.handle.net/1721.1/163343</id>
<updated>2025-10-22T03:34:53Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Streamlining Diagnostics of Electrical-Connection-Related Errors in General Assembly Using Augmented Reality Wearables
Salata, Elizabeth
Electrical connection errors arise frequently during manufacturing. It is optimal to repair these errors during General Assembly Trim Line stations when the wiring harnesses are still exposed and easily accessible. However, the time required to locate the cause of the errors often exceeds Trim station cycle times, so most repairs are delayed until after General Assembly. Due to the implications of shutting down the line, this results in significantly higher repair times, scrap costs, and resources. To overcome these challenges, there is clear evidence supporting the use of Augmented Reality (AR) tools to innovate and streamline manufacturing processes. This master's thesis identified deficiencies in the current standard operating procedure for addressing errors and used a human-centered design approach to develop a novel error diagnostic process using an AR overlay technique to pin point on the vehicle where the problem lies. This thesis also conducted an experiment to assess the performance, success rate, and perceived cognitive load of the two processes. The data collected from the experiment provided sufficient evidence that the diagnostic process developed for this thesis reduces the elapsed time to locate the connection error by 75% with a statistically significant reduction in overall perceived cognitive load. The likelihood of widespread adoption of the AR overlay process was assessed from an estimate of further AR hardware development, safety considerations in automotive manufacturing environments, and the level of enthusiasm of all stakeholders who were consulted for this research project.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>A Techno-Economic Assessment of Hybrid Renewable Energy and Battery Storage Systems for Data Centers</title>
<link href="https://hdl.handle.net/1721.1/163342" rel="alternate"/>
<author>
<name>Sirgo, Alex</name>
</author>
<id>https://hdl.handle.net/1721.1/163342</id>
<updated>2025-10-22T03:34:32Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">A Techno-Economic Assessment of Hybrid Renewable Energy and Battery Storage Systems for Data Centers
Sirgo, Alex
As the demand for data centers continues to grow, so does their energy consumption, making it increasingly important to develop sustainable and cost-effective strategies for powering them with carbon-free electricity. This thesis explores a techno-economic modeling framework that evaluates combinations of solar, wind, and battery energy storage systems to assess their ability to meet a data center’s electricity demand with on-site renewable generation. The model fills a gap in current literature by focusing on real-time energy matching using co-located infrastructure, rather than traditional off-site procurement methods like power purchase agreements and renewable energy credits.&#13;
&#13;
Using real-world weather and price data, the simulation calculates hourly generation, storage behavior, and grid interactions across a 20-year period. A financial model then calculates the levelized cost of energy (LCOE) for each system configuration. Results show that wind energy generally provides the lowest-cost renewable supply option, while hybrid solar and wind configurations improve renewable penetration. Battery storage plays a key role in shifting excess generation to periods of undersupply, but its economic viability depends on system sizing. Across different system configurations, renewable penetration ranged from 31.3% to 97.8%, while LCOE varied from $27.5/MWh to over $100/MWh, illustrating the trade-offs between cost and grid independence.&#13;
&#13;
By providing a structured analysis of the trade-offs between renewable penetration and cost, this research offers insight into how data centers and other energy-intensive facilities can design dedicated carbon-free energy systems. The findings underscore the importance of balancing resource diversity and storage investment to achieve decarbonization goals while maintaining economic viability.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Diagnostics in Additive Manufacturing Using Image-Based Machine Learning</title>
<link href="https://hdl.handle.net/1721.1/163341" rel="alternate"/>
<author>
<name>Varma, Arun Alejandro</name>
</author>
<id>https://hdl.handle.net/1721.1/163341</id>
<updated>2025-10-22T03:34:45Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Diagnostics in Additive Manufacturing Using Image-Based Machine Learning
Varma, Arun Alejandro
Additive Manufacturing (AM) is a vital capability in the aerospace industry. Blue Origin manufactures a substantial share of engine parts via metal AM. To meet growing customer demand, the company must dramatically increase engine throughput and, thus, 3D prints. Blue Origin has identified non-destructive testing (NDT) – particularly, Computed Tomography (CT) scanning – as an unsustainable bottleneck to expanding AM capacity. Not only is this process expensive, but, critically, there are not enough aerospace-grade CT machines in the world to support projected throughput. Without process change, meeting customer demand will soon become impossible. Yet, these scans provide important quality control, and any reduction in NDT must be accompanied by assurances of engine part integrity. This thesis introduces a diagnostic system that safely alleviates the bottleneck, and further yields insights that end-stage NDT alone cannot provide. The proposal is a machine learning system that evaluates the manufacturing process itself, examining layer-by-layer photographs captured during printing. It is predicated on two hypotheses: (1) These images, considered together, provide a synthetic 3D illustration of the build process; and (2) Machines can be taught to assess these process signatures dependably. The resulting system provides rich diagnostics. It achieves near-perfect anomaly recognition – 100% when using conservative defect thresholds. Operationally, the system can (at minimum) safely enable a 37-54% reduction in NDT, translating to millions of dollars in annual cost savings. In practice, this reduction will likely be higher. The system further enables early process intervention and a more data-driven approach to manufacturing intelligence. This work turns what began as an unsustainable bottleneck into an opportunity for enhanced quality control, process intelligence, and long-term manufacturing resilience.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Substitution among Social Media Platforms: Evidence from App Tracking Panel Data</title>
<link href="https://hdl.handle.net/1721.1/163340" rel="alternate"/>
<author>
<name>Lagutina, Rina</name>
</author>
<id>https://hdl.handle.net/1721.1/163340</id>
<updated>2025-10-22T03:34:30Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Substitution among Social Media Platforms: Evidence from App Tracking Panel Data
Lagutina, Rina
This thesis explores a novel approach to competitive intelligence in the social media ecosystem by leveraging external mobile panel data to study substitution dynamics. It focuses on contextspecific behavioral patterns to identify which platforms compete for user attention in given situations. Using mobile app session data from April 2023 for approximately 5,000 users, the analysis segments usage into three behavioral contexts – morning, evening, and at-home sessions – and characterizes user-app interactions through descriptive statistics. K-means clustering is applied to identify archetypes of usage behavior across these contexts, revealing distinct patterns such as quick-check habits, deep content consumption, and intensive texting. By comparing app usage profiles across contexts, the study uncovers shifts in how and when platforms are used, highlighting subtle substitution dynamics. To validate the findings, the study analyzes app usage during service outages, testing if potential substitutes see increased engagement when a competing platform is unavailable. These insights offer a richer, contextaware framework for product managers to uncover indirect competition and tailor platform strategies to specific user behaviors. Limitations include reliance on behavioral data without content-level detail, mobile-only focus, and demographic skew in the panel.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Harnessing Generative AI in Developing Economies: A Systems Framework for Policy Design in Bangladesh</title>
<link href="https://hdl.handle.net/1721.1/163339" rel="alternate"/>
<author>
<name>Bari, Md Mustabeen Ul</name>
</author>
<id>https://hdl.handle.net/1721.1/163339</id>
<updated>2025-10-22T03:34:46Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Harnessing Generative AI in Developing Economies: A Systems Framework for Policy Design in Bangladesh
Bari, Md Mustabeen Ul
This thesis develops a systems-based policy framework for Generative Artificial Intelligence (GenAI) implementation in developing economies, with specific application to Bangladesh. While GenAI's potential productivity and labor market impacts are well-studied in developed economies, limited research addresses the challenges faced by developing countries positioned primarily as technology consumers rather than producers. The research employs causal loop diagramming to map interactions between five critical policy domains: human capital development, digital infrastructure, data sovereignty, sectoral stimulus, and governance.&#13;
&#13;
The resulting framework identifies four primary reinforcing mechanisms that can accelerate adoption and three balancing mechanisms related to labor displacement. To validate the framework, the research analyzes contrasting implementation approaches from India and Egypt, demonstrating the importance of cross-domain synergies in effective policy design.&#13;
&#13;
Applied to Bangladesh, the framework yields a dual-entry strategy focusing on healthcare and education sectors as initial implementation domains, leveraging the country's strategic advantages while addressing resource constraints through a consortia-based implementation model that creates institutional resilience. The thesis contributes both a reusable conceptual toolkit for analyzing GenAI policy in resource-constrained settings and an initial context-anchored roadmap for Bangladesh. Future research should refine the framework through longitudinal case studies while developing more detailed, stakeholder-engaged implementation plans for Bangladesh that include concrete budget allocations, institutional responsibilities, and measurable outcomes.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>The Value of Digitizing Manufacturing Environments</title>
<link href="https://hdl.handle.net/1721.1/163338" rel="alternate"/>
<author>
<name>Briggi, Conor S.</name>
</author>
<id>https://hdl.handle.net/1721.1/163338</id>
<updated>2025-10-22T03:34:40Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">The Value of Digitizing Manufacturing Environments
Briggi, Conor S.
There is significant variability and dispute around the value of digitally transformed manufacturing environments and no single methodology is broadly accepted. The variability stems from time-dependencies, implementation effectiveness, and the dynamic environments digital solutions are deployed in. However, an accurate accounting of this value is essential to company strategic planning. The research outlines how to approach this variability, cost parameters to consider, primary sources of value generation, and best practices for implementing Smart Factories. A tool that addresses these issues was successfully developed and deployed at Stanley Black &amp; Decker, helping the company to assess performance of the digitization efforts and tailor the delivered solution to optimize manufacturing performance. Results from this tool showed a positive expected return on investment and are provided to contextualize efforts in similar areas.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multimodal Generative AI Chatbot for Root Cause Diagnosis in Predictive Maintenance</title>
<link href="https://hdl.handle.net/1721.1/163337" rel="alternate"/>
<author>
<name>Lorente Anon, Carla</name>
</author>
<id>https://hdl.handle.net/1721.1/163337</id>
<updated>2025-10-22T03:34:54Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Multimodal Generative AI Chatbot for Root Cause Diagnosis in Predictive Maintenance
Lorente Anon, Carla
Predictive maintenance plays a critical role in industrial operations by enabling organizations to detect potential equipment failures before they occur. However, while sensor data can identify anomalies such as excessive vibration or temperature fluctuations, technicians often struggle to efficiently diagnose and resolve the root causes of these alarms. This research presents a generative AI-powered chatbot designed to enhance the root cause diagnosis process in predictive maintenance by leveraging multimodal retrieval-augmented generation (RAG) and advanced AI-driven troubleshooting capabilities.&#13;
&#13;
The chatbot integrates multiple functionalities to support maintenance teams in resolving alarms quickly and accurately. Its time series analysis module processes real-time sensor data, identifying abnormal patterns and guiding users through a structured troubleshooting workflow. The retrieval-augmented generation (RAG) engine allows the chatbot to retrieve and synthesize relevant troubleshooting information from technical manuals, historical maintenance records, and structured knowledge bases, ensuring that technicians receive precise, grounded outputs. Additionally, the chatbot supports multimodal interactions, enabling users to upload images, audio, and video for more comprehensive diagnostics. By analyzing uploaded images of damaged components, transcribing spoken maintenance reports, and processing video footage of equipment malfunctions, the chatbot enhances problem identification and resolution.&#13;
&#13;
Another key feature of the chatbot is its interactive guided conversation system, which enables multi-turn dialogues that refine diagnostics dynamically based on technician input. Instead of providing static troubleshooting steps, the chatbot continuously adapts its responses to ensure that users receive the most relevant recommendations as the diagnostic process unfolds. To maintain safety and reliability, the system incorporates AI guardrails, filtering inappropriate or irrelevant inputs while ensuring that generated responses align with best practices for industrial maintenance.&#13;
&#13;
An evaluation framework is proposed to assess the chatbot’s effectiveness, focusing on retrieval accuracy, response relevance, and diagnostic efficiency. Initial results demonstrate approximately 30% reduction in diagnostic time, highlighting the chatbot’s potential to improve maintenance workflows, reduce downtime, and enhance technician productivity. This research underscores the transformative role of multimodal generative AI in predictive maintenance and lays the foundation for broader industrial applications. As a result of this work, a patent has been filed to protect the novel architecture and methods developed. Future work could focus on expanding retrieval capabilities to include video, integrating intelligent task automation for dynamic work order generation, and refining alarm prioritization using adaptive risk-based assessments.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Quantifying over Individual Concepts</title>
<link href="https://hdl.handle.net/1721.1/163336" rel="alternate"/>
<author>
<name>Kobayashi, Filipe Hisao</name>
</author>
<id>https://hdl.handle.net/1721.1/163336</id>
<updated>2025-10-22T03:31:15Z</updated>
<published>2023-09-01T00:00:00Z</published>
<summary type="text">Quantifying over Individual Concepts
Kobayashi, Filipe Hisao
Since Montague (1973), it has been assumed that quantificational DPs must, at least sometimes, be analyzed as quantifiers over individual concepts (i.e., functions from indices of evaluation to individuals). Because the domain of individual concepts is significantly greater than that of individuals, the challenge has always been how to properly constrain quantification over these objects. This dissertation proposes a solution to this problem by developing a novel theory as to how NPs are shifted from predicates of individual into predicates of individual concepts. The idea is that, since NPs are interpreted as restrictors, the nature of this shifting mechanism will constrain quantification. The proposal bears a strong resemblance to the analysis of interrogative clauses of Karttunen (1977): suitable predicates of individual concepts are built from the interaction of a type-shifting operation and existential quantifiers. In three cases studies, I show how this theory can solve old and new puzzles: (i) the different interpretations of sentences of the form ‘[Det NP] changed’ (Nathan 2006); (ii) two ambiguities in the interpretation of concealed questions (Heim 1979); and (iii) question intruders, a novel puzzle concerning the interpretation of both embedded interrogative clauses and concealed questions.
</summary>
<dc:date>2023-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Within ‘Reason’: A Study of Normative Language</title>
<link href="https://hdl.handle.net/1721.1/163335" rel="alternate"/>
<author>
<name>Watkins, Eliot</name>
</author>
<id>https://hdl.handle.net/1721.1/163335</id>
<updated>2025-10-22T03:31:13Z</updated>
<published>2023-09-01T00:00:00Z</published>
<summary type="text">Within ‘Reason’: A Study of Normative Language
Watkins, Eliot
What do we mean when we say that someone ought to do something? What do we mean when we say that someone has a reason to do something? What do we mean when we say that someone has more reason to do one thing rather than another? The primary goal of this project is to shed light on these semantic questions.&#13;
&#13;
The picture of normative talk that I develop across this thesis has a distinctive feature: the notion of a reason (roughly, a fact that counts in favour of something) isn’t given any fundamental role to play. Instead, the meanings of ‘ought’, ‘must’ and ‘is a reason for…’ are all understood in terms of something gradable – they’re understood in terms of facts about how much reason there is for something to be done.&#13;
&#13;
Chapter One focuses on deontic modals like ‘ought’ and ‘must’. I argue that the standard semantics for these expressions is incompatible with the idea that facts about what you ought to do are connected with facts about what you have reason to do. I develop a new semantics for deontic modals which builds-in the connections between ought and reasons from the ground up.&#13;
&#13;
Chapter Two centres on ‘reason’. We use ‘reason’ as both a count noun (as in “there is a reason for you to read my dissertation”) and a mass noun (as in “there is some reason for you to read my dissertation”). I argue that the best semantics for ‘reason’ will treat the mass form as fundamental. ‘Reason’ is a predicate of a particular kind of state – the state someone is in when they have reason to do something. I turn this result into an argument against the enduringly popular idea that count noun reasons are normatively fundamental.&#13;
&#13;
Chapter Three stays with reasons. According to a standard picture, normative reasons do not extend beyond the boundaries of agency. If something isn’t an agent – if it can’t do rudimentary practical reasoning – then there can’t be normative reasons for it to do one thing rather than another. I argue that this standard picture gets things totally wrong: there are reasons for non-agents to be certain ways and do certain things. We must not analyse what it is to be a reason by appealing to distinctively agential capacities.
</summary>
<dc:date>2023-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Lessons from CP in Passamaquoddy and beyond</title>
<link href="https://hdl.handle.net/1721.1/163334" rel="alternate"/>
<author>
<name>Grishin, Peter Nicholas</name>
</author>
<id>https://hdl.handle.net/1721.1/163334</id>
<updated>2025-10-22T03:31:18Z</updated>
<published>2023-09-01T00:00:00Z</published>
<summary type="text">Lessons from CP in Passamaquoddy and beyond
Grishin, Peter Nicholas
This thesis explores various aspects of CP morphosyntax in Passamaquoddy-Wolastoqey and other Algonquian languages and their consequences for broader generative syntactic theory. It consists of two parts: one investigates clause typing and clause size in Passamaquoddy, and the other investigates the properties of a CP-layer agreement marker, the peripheral suffix, across Algonquian. In addition, a lengthy background chapter offers new data and insight on the correct analysis of the inverse and obviation in Passamaquoddy and across Algonquian.&#13;
&#13;
Part I studies the distribution of the three morphologically-distinguished non-imperative clause types in Passamaquoddy: the independent, the conjunct, and the subordinative. I argue that their distribution in complementation and coordination structures falls out naturally from their structural size, following the work of Wurmbrand and Lohninger (2023) and Bjorkman (2012, 2013). I support this conclusion by carefully investigating how each clause type interacts with Ā phenomena like wh movement and long distance agreement, showing that various complex interactions between these syntactic processes are derivative of clause size: independent clauses and conjunct clauses under epistemic attitudes are large, phasal CPs, conjunct clauses under direct perception predicates are smaller, non-phasal CPs, and subordinative clauses are bare TPs.&#13;
&#13;
Part II studies two unexpected properties of peripheral agreement across Algonquian: (i) its preference for agreeing with third persons, no matter their syntactic role (found in all Algonquian languages); and (ii) its preference for agreeing with the least local goal (found in languages like Passamaquoddy, Ojibwe, and Wampanoag). I explore the consequences of these typologically unusual properties for the theory of φ agreement and provide an analysis of the cross-Algonquian variation we find in peripheral agreement (building on Xu 2021, 2022). I argue that Algonquian third person preference forces us to accept Nevins (2007) and Trommer’s (2008) conclusion that third person cannot be underspecified relative to first and second person, even in the syntax (contra Preminger 2019a and van Alem 2023). Additionally, I show that Algonquian lowest preference doesn’t force us to give up on standard locality properties of Agree, and argue for an analysis under which C agrees with all matching accessible goals, but only spells out the last Agree relation—Expone Outermost—building a parallel with similar ideas in the domain of multiple case assignment. Finally, I capture cross-Algonquian variation in peripheral agreement by varying the specification of the peripheral agreement probe and varying which arguments are able to shift out of the VP phase.
</summary>
<dc:date>2023-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>*ABA in Multidimensional Paradigms: A MAX/DEP-based account</title>
<link href="https://hdl.handle.net/1721.1/163333" rel="alternate"/>
<author>
<name>Zompì, Stanislao</name>
</author>
<id>https://hdl.handle.net/1721.1/163333</id>
<updated>2025-10-22T03:31:14Z</updated>
<published>2023-09-01T00:00:00Z</published>
<summary type="text">*ABA in Multidimensional Paradigms: A MAX/DEP-based account
Zompì, Stanislao
The last decade and a half has witnessed intensive research into *ABA universals—generalizations such as “If a nominative and the corresponding dative have the same exponent, then the corresponding accusative has that exponent, too” (Caha 2009; Smith et al. 2019). Most existing work on these universals has only focused on one ‘paradigm column’ at a time, by checking a given paradigm’s nominative singular, accusative singular, and dative singular, for example, with no heed to whether any of the relevant exponents would also show up in that paradigm’s nominative plural, accusative plural, or dative plural. However, some recent literature has pointed out that inspecting full paradigms is crucial to our understanding of *ABA, because some classic accounts that derive *ABA column-internally turn out to also make predictions as to what may or may not happen across columns, and those predictions are often incorrect (cf., among others, Christopoulos &amp; Zompì 2022). In this dissertation, I review those incorrect predictions and replace them with a novel generalization specifically concerning *ABA-like effects in multidimensional paradigms. I then set out to derive this generalization by setting up an exponent-selection system wherein exponents may both be underspecified and be overspecified with respect to their exponenda, with each of these departures from a perfect match being penalized but not necessarily fatal. In particular, I explicitly implement this intuition in optimality-theoretic terms, via a strict-domination ranking of violable Max and Dep constraints (cf. in particular Ackema &amp; Neeleman 2005; Wolf 2008; Müller 2020), and I show that the resulting system, while restrictive enough to derive the desired generalization, is also powerful enough to afford a natural account of some notoriously unnatural (‘morphomic’) exponent distributions in the inflection of Germanic pronouns and Romance verbs.
</summary>
<dc:date>2023-09-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Intangible Investments and the Accrual-Cash Flow Relationship</title>
<link href="https://hdl.handle.net/1721.1/163332" rel="alternate"/>
<author>
<name>Soares, Fabio</name>
</author>
<id>https://hdl.handle.net/1721.1/163332</id>
<updated>2025-10-22T03:34:34Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Intangible Investments and the Accrual-Cash Flow Relationship
Soares, Fabio
This paper investigates whether the weakening negative relationship between accruals and operating cash flows can be attributed to the immediate expensing of intangible investments under current accounting standards. Building on the framework proposed by Green et al. (2022), I examine how the mechanical capitalization of intangible investments affects the accrual-cash flow relationship across firms with varying R&amp;D intensities. I show that the capitalization impacts the relationship in unexpected ways, indicating that the proposed rationale cannot fully explain the observed trend. I further exploit differences in accounting treatments under IFRS and US GAAP to test whether increased capitalization of intangible investments through development costs strengthens the relationship. I find that the relationship is significantly more negative under IFRS than US GAAP, independently of R&amp;D expenditure, suggesting that increased capitalization alone does not explain the differences. Additionally, the positive trend observed for high R&amp;D firms in both standards highlights that increased capitalization is insufficient to reverse the weakening trend. These results challenge the view that current accounting practices are the primary cause of the weakening accrual-cash flow relationship and underscore the need for further exploration of alternative explanations.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Winning Over Gen Z: The Evolving Strategies of Sports Leagues&#13;
and Media in Response to Changing Youth Habits</title>
<link href="https://hdl.handle.net/1721.1/163331" rel="alternate"/>
<author>
<name>Zeng, Arnaud</name>
</author>
<id>https://hdl.handle.net/1721.1/163331</id>
<updated>2025-10-22T03:34:35Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Winning Over Gen Z: The Evolving Strategies of Sports Leagues&#13;
and Media in Response to Changing Youth Habits
Zeng, Arnaud
This thesis examines how sports leagues and media companies are evolving to better connect with Generation Z, a generation whose changing expectations and habits – on-demand and socially driven – are reshaping the landscape of sports consumption. With fewer Gen Z fans watching full games on traditional mediums, the industry is being pushed to rethink its approach, adapting not just how content is delivered, but also what kind of content is created. Through a combination of expert interviews and industry data, this paper looks at the rise of short-form content, the importance of digital-first platforms, and the growing influence of storytelling&#13;
through influencers or behind the scenes. It also explores how new competition formats are exploiting what it now means to be a fan. The goal is to understand how the sports ecosystem is adjusting to remain relevant to its youngest audience.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Metal Additive Manufacturing Capabilities for Footwear Prototyping and Product Creation</title>
<link href="https://hdl.handle.net/1721.1/163330" rel="alternate"/>
<author>
<name>Xi, Tiffany</name>
</author>
<id>https://hdl.handle.net/1721.1/163330</id>
<updated>2025-10-22T03:34:43Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Metal Additive Manufacturing Capabilities for Footwear Prototyping and Product Creation
Xi, Tiffany
In the footwear industry, the speed in which footwear designs reach the market impacts the ability for a company to accurately meet the demands of its customers as the probability of consumer preferences changing increases with time. This research investigates the impact of incorporating metal additive manufacturing capabilities into the product creation process of a major athletic footwear company. The study aims to determine whether and under which applications metal additive manufacturing can increase the speed at which footwear designs reach the market, while maintaining or improving the desired product quality.&#13;
    A case study approach was employed, focusing on the development of rubber outsole molds using metal additive manufacturing technology. The study compared two process flows that excluded and included metal additive manufacturing. The case study evaluated these processes based on the speed of the development process and the quality of the produced footwear samples. The footwear sample quality was measured against production-equivalent samples obtained from the company’s manufacturing partner. The results demonstrated that incorporating metal additive manufacturing capabilities led to a reduction in the time required for mold design and fabrication. This speed advantage was primarily attributed to the ability to directly fabricate detailed textures into the mold, eliminating the need for outsourced etching processes.&#13;
    The visual quality of samples produced did not fully match those created by the company's manufacturing partners but were sufficient for initial sample development. Importantly, the traction properties were comparable to those of the manufacturing partner's samples, indicating that the functional quality of the samples is adequate for product development purposes.&#13;
This research provides valuable insights into the potential of metal additive manufacturing in accelerating footwear product development. Future work recommendations include exploring advanced modeling and design software and examining the impact of machine parameters on build quality. The findings of this study have implications for both the footwear industry and other sectors considering the integration of metal additive manufacturing technologies into their product development processes.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Evaluating Impact Investing through a Systems Thinking Lens:&#13;
Hallmarks of a Transformational Approach</title>
<link href="https://hdl.handle.net/1721.1/163329" rel="alternate"/>
<author>
<name>Zhang, Yu (Sherry)</name>
</author>
<id>https://hdl.handle.net/1721.1/163329</id>
<updated>2025-10-22T03:34:33Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Evaluating Impact Investing through a Systems Thinking Lens:&#13;
Hallmarks of a Transformational Approach
Zhang, Yu (Sherry)
As impact investing increasingly aspires to drive systemic change, the question of how to evaluate such efforts remains underexplored. Traditional evaluation approaches often grounded in linear causality and program-level outputs, and struggled to capture the complexity, interdependence, and emergent nature of systemic transformation. This thesis investigates how systemic investing can be evaluated by integrating systems thinking, evaluation theory, and investing practice. It develops a conceptual framework of thirteen hallmarks that characterize systemic investing evaluation across dimensions such as time horizons, stakeholder engagement, cross-sector collaboration, and capital dynamics. Drawing on 46 real-world cases, the research identifies 112 indicators to make these hallmarks observable and assessable in practice. To support practical application, the thesis also introduces an AI-assisted scoring tool that automates the evaluation of narrative content using the framework. Together, these contributions aim to support more reflective, adaptive, and system-aware evaluation practices in the emerging field of systemic investing.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Multi-Objective Optimization of Container Load Plans for Modulating Inventory Flow</title>
<link href="https://hdl.handle.net/1721.1/163328" rel="alternate"/>
<author>
<name>Sen, Shweta</name>
</author>
<id>https://hdl.handle.net/1721.1/163328</id>
<updated>2025-10-22T03:34:38Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Multi-Objective Optimization of Container Load Plans for Modulating Inventory Flow
Sen, Shweta
Conventional strategies for container load planning (CLP) predominantly emphasize maximizing container utilization, which can result in suboptimally-timed inventory arrival, increased inventory holding costs, and downstream operational inefficiencies. Using a real-world case study from a global footwear and apparel retailer, this research formulates a novel multi-objective mixed-integer linear programming (MOMILP) model that jointly considers container utilization, transportation and storage costs, and timing accuracy of inventory delivery. The proposed model utilizes a branch-and-bound algorithm to evaluate numerous load configurations, assessing the impact of different load rules and weighting parameters on transportation performance metrics and inventory flow. Results highlight the cruciality of prioritizing delivery precision in transportation management decisions, demonstrating that solely maximizing volume utilization can adversely affect overall cost efficiency when downstream inventory storage and operational requirements are considered. This work also provides a process map of load planning activities and identifies targeted operational improvements, such as consolidation bypass and purchase order (PO) partitioning, that can enhance inventory flow smoothness, reduce transportation costs, and support more responsive logistics networks. Collectively, this work extends existing CLP methodologies by incorporating delivery timing and inventory storage considerations into load planning decisions, offering practical enhancements for logistics optimization.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Principles and Practices of Gap-Closing Investing</title>
<link href="https://hdl.handle.net/1721.1/163327" rel="alternate"/>
<author>
<name>Kapor, Mitchell</name>
</author>
<id>https://hdl.handle.net/1721.1/163327</id>
<updated>2025-10-22T03:34:32Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Principles and Practices of Gap-Closing Investing
Kapor, Mitchell
This thesis examines the principles and practices of gap-closing investing, a distinctive model of early-stage venture capital investing that seeks to close gaps in access, opportunity, and outcomes for low-income communities and communities of color. Developed by Dr. Freada Kapor Klein and Mitchell Kapor through Kapor Capital, gap-closing investing integrates social impact objectives with a performance-driven investment strategy. The thesis combines historical analysis of socially responsible investing and impact investing with case studies of venturebacked startups to situate gap-closing investing within a broader tradition of values-based finance. It traces the ethical roots of impact investing to religious traditions, the emergence of socially responsible investing funds in the 1970s, and the formalization of impact investing terminology in the late 2000s. Gap-closing investing is distinguished by a developmental approach to startup growth, a redefinition of founder selection criteria emphasizing “distance traveled” over pedigree, and a focus on mitigating structural barriers through capital allocation. The thesis critically compares gap-closing investing to Corporate Social Responsibility (CSR) and Environmental, Social, and Governance (ESG) frameworks, arguing that gap-closing uniquely centers systemic impact as a core investment goal rather than a secondary consideration. The findings challenge the perception that impact investing is inherently concessionary, using performance data from Kapor Capital’s portfolio to demonstrate that intentional, equity-focused investing can produce both superior financial returns and measurable social outcomes. Gap-closing investing is presented as both a pragmatic investment strategy and a model for using venture capital to drive systemic change toward a more inclusive economy.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Predictive Model for Battery State of Health</title>
<link href="https://hdl.handle.net/1721.1/163326" rel="alternate"/>
<author>
<name>Garza Lozano, Catalina</name>
</author>
<id>https://hdl.handle.net/1721.1/163326</id>
<updated>2025-10-22T03:34:44Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Predictive Model for Battery State of Health
Garza Lozano, Catalina
As battery energy storage systems (BESS) become critical components of grid infrastructure, accurately assessing their State of Health (SoH) is essential for optimizing performance, reducing costs, and ensuring contractual compliance. This thesis investigates the development of accurate, real-time SoH estimation models for utility-scale battery storage sites operated by NextEra Energy. Current SoH measurements—derived from annual capacity tests and Battery Management System (BMS) data—are often inaccurate or infrequent, leading to either over- or under-augmentation and resulting in financial inefficiencies. &#13;
&#13;
To address this gap, four state estimation models were developed and evaluated: an Unscented Kalman Filter (UKF), a Long Short-Term Memory (LSTM) Recurrent Neural Network (RNN), a multitask RNN, and a Delayed Reinforcement Learning (DRL) model. Each model uses operational data—such as voltage, current, temperature, and State of&#13;
Charge (SoC)—to estimate degradation patterns and predict SoH at the rack, lineup, and site levels. Their outputs were compared against ground-truth capacity test results from a large-scale battery storage site.&#13;
&#13;
The DRL model demonstrated the highest accuracy, achieving a deviation of only 1.6 months compared to capacity test data, significantly outperforming existing BMS readings and the other three models. These findings underscore the value of advanced machine learning techniques in enabling proactive maintenance, optimized augmentation scheduling, and cost-efficient storage site management. This research offers a scalable framework for real-time SoH estimation across large fleets of battery storage assets and contributes to the broader goal of improving grid reliability through smarter energy storage management.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Data-Driven Key Performance Indicator Modeling for Robotic Mobile Fulfillment Systems</title>
<link href="https://hdl.handle.net/1721.1/163325" rel="alternate"/>
<author>
<name>Sowards, Steffan</name>
</author>
<id>https://hdl.handle.net/1721.1/163325</id>
<updated>2025-10-22T03:34:39Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Data-Driven Key Performance Indicator Modeling for Robotic Mobile Fulfillment Systems
Sowards, Steffan
This work presents a study on the development and application of data-driven operational efficiency and throughput Key Performance Indicator (KPI) modeling for Robotic Mobile Fulfillment Systems (RMFS). Through rigorous analysis of extensive operational data from an operating RMFS, we demonstrate the efficacy of machine learning approaches in predicting and optimizing the performance of complex warehouse automation systems. The research employs advanced techniques, including gradient boosted bagged tree ensembles and AutoML, to capture complex input interactions and provide parallel predictions across multiple KPIs. Our models achieve a mean R² value of 0.7838 across all templates and KPIs, with particularly strong performance in our top performing metric across templates (mean R² of 0.9660).&#13;
&#13;
The study introduces a novel framework for feature engineering and selection, emphasizing actionable inputs while excluding intermediate variables to enhance model interpretability and practical utility. We validate our approach against novel operating conditions, demonstrating the models’ ability to generalize to unseen scenarios. Interpretability techniques, including SHAP analysis and permutation feature importance, provide valuable insights into system behavior and key performance drivers.&#13;
&#13;
This research establishes a generalizable framework for leveraging data-driven modeling in predicting and optimizing brownfield warehouse automation system behavior. The developed approach offers significant potential for enhancing operational decision-making, system design, and strategic planning in the rapidly evolving field of e-commerce fulfillment.
</summary>
<dc:date>2025-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Essays on Bayesian Entrepreneurship: Evaluating and Commercializing Unconventional Ideas</title>
<link href="https://hdl.handle.net/1721.1/163324" rel="alternate"/>
<author>
<name>Gius, Luca</name>
</author>
<id>https://hdl.handle.net/1721.1/163324</id>
<updated>2025-10-22T03:31:12Z</updated>
<published>2025-05-01T00:00:00Z</published>
<summary type="text">Essays on Bayesian Entrepreneurship: Evaluating and Commercializing Unconventional Ideas
Gius, Luca
This disse