Transitions in genetic toggle switches driven by dynamic disorder in rate coefficients
Author(s)
Chen, Hang; Thill, Peter Daniel; Cao, Jianshu
DownloadCao_Transitionsin.pdf (532.3Kb)
PUBLISHER_POLICY
Publisher Policy
Article is made available in accordance with the publisher's policy and may be subject to US copyright law. Please refer to the publisher's site for terms of use.
Terms of use
Metadata
Show full item recordAbstract
In biochemical systems, intrinsic noise may drive the system switch from one stable state to another. We investigate how kinetic switching between stable states in a bistable network is influenced by dynamic disorder, i.e., fluctuations in the rate coefficients. Using the geometric minimum action method, we first investigate the optimal transition paths and the corresponding minimum actions based on a genetic toggle switch model in which reaction coefficients draw from a discrete probability distribution. For the continuous probability distribution of the rate coefficient, we then consider two models of dynamic disorder in which reaction coefficients undergo different stochastic processes with the same stationary distribution. In one, the kinetic parameters follow a discrete Markov process and in the other they follow continuous Langevin dynamics. We find that regulation of the parameters modulating the dynamic disorder, as has been demonstrated to occur through allosteric control in bistable networks in the immune system, can be crucial in shaping the statistics of optimal transition paths, transition probabilities, and the stationary probability distribution of the network.
Date issued
2016-05Department
Massachusetts Institute of Technology. Department of ChemistryJournal
The Journal of Chemical Physics
Publisher
American Institute of Physics (AIP)
Citation
Chen, Hang, Peter Thill, and Jianshu Cao. “Transitions in Genetic Toggle Switches Driven by Dynamic Disorder in Rate Coefficients.” The Journal of Chemical Physics 144.17 (2016): 175104. © 2017 AIP Publishing LLC
Version: Final published version
ISSN
0021-9606
1089-7690