Transite: A Computational Motif-Based Analysis Platform That Identifies RNA-Binding Proteins Modulating Changes in Gene Expression
Author(s)
Krismer, Konstantin; Bird, Molly A.; Varmeh, Shohreh; Handly, Erika D.; Gattinger, Anna; Bernwinkler, Thomas; Anderson, Daniel A.; Heinzel, Andreas; Joughin, Brian A.; Kong, Yi Wen; Cannell, Ian G.; Yaffe, Michael B.; ... Show more Show less
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© 2020 The Author(s) Krismer et al. present a computational approach to identify RNA-binding proteins (RBPs) that modulate post-transcriptional control of gene expression using RNA expression data as inputs. By applying this approach to publicly available patient datasets, they identify and experimentally confirm that the RBP hnRNPC contributes to chemotherapy resistance in lung cancer.
Date issued
2020-08Department
Massachusetts Institute of Technology. Computer Science and Artificial Intelligence Laboratory; Center for Precision Cancer Medicine; Koch Institute for Integrative Cancer Research at MIT; Massachusetts Institute of Technology. Synthetic Biology Center; Massachusetts Institute of Technology. Department of Biological Engineering; Massachusetts Institute of Technology. Department of BiologyJournal
Cell Reports
Publisher
Elsevier BV
ISSN
2211-1247