Browsing Synthetic Biology by Title
Now showing items 64-83 of 139
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Engineering the Interface Between Cellular Chassis and Integrated Biological Systems
(2005-08-08)The engineering of biological systems with predictable behavior is a challenging problem. One reason for this difficulty is that engineered biological systems are embedded within complex and variable host cells. To help ... -
Engineering the Interface Between Cellular Chassis and Integrated Biological Systems
(2005-10-21)The engineering of biological systems with predictable behavior is a challenging problem. One reason for this difficulty is that engineered biological systems are embedded within complex and variable host cells. To help ... -
Engineering transcription-based digital logic devices
(2007-07-17)Implementing in vivo information processing is a key challenge in synthetic biology. We describe the construction and characterization of digital transcription-based devices from zinc fingers and leucine zippers. We also ... -
Engineering transcription-based digital logic devices
(Sixth International Conference on Systems Biology, 2005-10-20)The goal of Synthetic Biology is to engineer systems from biological parts. One class of systems are those whose purpose is to process information. My work seeks to build transcription-based devices for use in combinational ... -
Fast multiple gene fragment ligation method based on homologous recombination
(2010-10-31)With the established BioBrick Assembly standards, ligation of different parts has to be accomplished step by step. It can be time-consuming when dealing with multiple fragment ligation. BBF RFC 62 is developed aimed at ... -
Fast multiple gene fragment ligation method based on Type IIs restriction enzyme DraIII
(2010-10-31)With the established BioBrick Assembly standards, ligation of different parts has to be accomplished step by step. It can be time-consuming when dealing with multiple fragment ligation. BBF RFC 61 is developed aimed at ... -
Fluorescence assay for polymerase arrival rates
(Massachusetts Institute of Technology, 2004)To engineer complex synthetic biological systems will require modular design, assembly, and characterization strategies. The RNA polymerase arrival rate (PAR) is defined to be the rate that RNA polymerases arrive at a ... -
Fluorescence Assay for Polymerase Arrival Rates
(2003-08-31)To engineer complex synthetic biological systems will require modular design, assembly, and characterization strategies. The RNA polymerase arrival rate (PAR) is defined to be the rate that RNA polymerases arrive at a ... -
From Genetically Modified Organisms To Synthetic Biology: Legislation in the European Union, in Six Member Countries and in Switzerland
(2007-12-04)This report is based on the assumption that in Europe and in its member countries—with the exception perhaps of Switzerland—“synthetic genomics” as a distinct policy domain does not yet exist. This conclusion is based ... -
Fusion Protein (Freiburg) Biobrick assembly standard
(2009-04-18)This Request for Comments (RFC) describes an extension to the original BioBrick assembly standard (BBF RFC 10). The Fusion Assembly strategy described here is fully backwards compatible with RFC 10 and supports the ... -
GenBrick – A Rapid Multi-Part Assembly Method for BioBricks
(2013-10-04)This BioBricks Foundation Request for Comments (BBF RFC) describes a novel approach, GenBrick, for the rapid assembly of multiple BioBrick RFC10-compatible parts in a single reaction, with completely flexible part order, ... -
GeneJax: A Prototype CAD tool in support of Genome Refactoring
(2006-05-26)Refactoring is a technique used by computer scientists for improving program design. The Endy Laboratory has adapted this process to make the genomes of biological organisms more amenable to human understanding and design ... -
General updating scheme for the design and construction of assembly vectors that are compatible with BBF RFC 10 and BBF RFC 28
(2010-12-05)BBF RFC 75 intends to link the BBF RFC 28-based combinatorial multi-part assembly method to BBF RFC 10. Its aim is to easily redesign an expression vector to make it compatible to BBF RFC 10 for the construction of fusion ... -
The GoldenBricks assembly: A standardized one-shot cloning technique for complete cassette assembly
(2012-11-05)BBF RFC 92 proposes a new standard assembly method for the Parts Registry. The method makes one-shot cloning of a complete eukaryotic or prokaryotic cassette possible in one day while keeping compatibility with the BBF RFC ... -
HiCT: High Throughput Protocols For CPE Cloning And Transformation
(2013-10-04)The purpose of this RFC is to provide instructions for a rapid and cost efficient cloning and transformation method which allows for the manufacturing of multi-fragment plasmid constructs in a parallelized manner: High ... -
How to Build Kinetic Models of BioBricks
(2009-10-21)This BioBricks Foundation Request for Comments (BBF RFC) provides instructions on how to automatically generate a model of any BioBrick sequence. These models can be used in computer simulations of the dynamic behavior of ... -
Idempotent Vector Design for Standard Assembly of Biobricks
(MIT Artificial Intelligence Laboratory; MIT Synthetic Biology Working Group, 2003)The lack of standardization in assembly techniques for DNA sequences forces each DNA assembly reaction to be both an experimental tool for addressing the current research topic, and an experiment in and of itself. One ... -
iGEM 2005 Invitation Supplement
(2005-09-29)This document provides background material in support of the 2005 intercollegiate Genetically Engineered Machine Competition (aka iGEM). Herein, you can read quick summaries of earlier competitions and courses, obtain a ... -
Impact of Synthetic Genomics on the Threat of Bioterrorism with Viral Agents
(2007-12-04)In 2002, a team of researchers at the State University of New York led by Eckard Wimmer assembled a DNA template for the RNA poliovirus using an internet-available nucleotide sequence and mail order synthetic ...
