dc.contributor.advisor | Jonathan King. | en_US |
dc.contributor.author | Kosinski-Collins, Melissa Sue, 1978- | en_US |
dc.contributor.other | Massachusetts Institute of Technology. Dept. of Biology. | en_US |
dc.date.accessioned | 2007-09-27T20:13:22Z | |
dc.date.available | 2007-09-27T20:13:22Z | |
dc.date.copyright | 2005 | en_US |
dc.date.issued | 2005 | en_US |
dc.identifier.uri | http://dspace.mit.edu/handle/1721.1/28672 | en_US |
dc.identifier.uri | http://hdl.handle.net/1721.1/28672 | |
dc.description | Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Biology, 2005. | en_US |
dc.description | Includes bibliographical references. | en_US |
dc.description.abstract | Human [gamma]D crystallin (H[gamma]D-Crys) and human [gamma]S crystallin (H[gamma]S-Crys), are major proteins of the human eye lens and are components of cataracts. H[gamma]D-Crys is expressed early in life in the lens cortex while H[gamma]S-Crys is expressed throughout life in the lens epithelial cells. Both are primarily β-sheet proteins made up of four Greek keys separated into two domains and display 69% sequence similarity. The unfolding and refolding of H[gamma]D-Crys and H[gamma]S-Crys have been characterized as a function of guanidinium hydrochloride (GdnHCl) concentration at neutral pH and 37⁰C, using intrinsic tryptophan fluorescence to monitor in vitro folding. Equilibrium unfolding and refolding experiments with GdnHCl showed unfolded protein is more fluorescent than its native counter-part despite the absence of metal or ion-tryptophan interactions in both of these proteins. This fluorescence quenching may influence the lens response to ultraviolet light radiation or the protection of the retina from ambient ultraviolet damage. Wild-type H[gamma]D-Crys exhibited reversible refolding above 1.0 M GdnHCl. Aggregation of refolding intermediates of H[gamma]D-Crys was observed in both equilibrium and kinetic refolding processes. The aggregation pathway competed with productive refolding at denaturant concentrations below 1.0 M GdnHCl, beyond the major conformational transition region. H[gamma]S-Crys, however, exhibited a two-state reversible unfolding and refolding with no evidence of aggregation. Atomic force microscopy of H[gamma]D-Crys samples under aggregating conditions revealed ordered fiber structures that could recruit H[gamma]S-Crys to the aggregate. To provide fluorescence reporters | en_US |
dc.description.abstract | (cont.) for each quadrant of H[gamma]D-Crys, triple mutants each containing three tryptophan to phenylalanine substitutions and one native tryptophan have been constructed and expressed. Trp68-only and Trp 156-only retained the quenching pattern of wild-type H[gamma]D-Crys. During equilibrium refolding/unfolding, the tryptophan fluorescence signals indicated that domain I (W42-only and W68-only) unfolded at lower concentrations of GdnHCl than domain II (W130-only and W156-only). Kinetic analysis of both the unfolding and refolding of the triple mutant tryptophan proteins identified an intermediate along the H[gamma]D-Crys folding pathway with domain I unfolded and domain II intact. This species is a candidate for the partially folded intermediate in the in vitro aggregation pathway of H[gamma]D-Crys. An N143D deamination post-translational modification has recently been identified in H[gamma]S-Crys that is present in high concentrations in insoluble protein removed from cataractous lenses. The presence of the N143D mutation did not significantly affect the equilibrium or kinetic properties of H[gamma]S-Crys indicating that this mutation is unlikely to be involved in protein destabilization during cataract formation in vivo. The method in which H[gamma]D-Crys aggregates on its own and engages neighboring molecules in the polymerization process in vitro may provide insight into the process of cataractogenesis in vivo. | en_US |
dc.description.statementofresponsibility | by Melissa Sue Kosinski-Collins. | en_US |
dc.format.extent | 217 p. | en_US |
dc.language.iso | eng | en_US |
dc.publisher | Massachusetts Institute of Technology | en_US |
dc.rights | M.I.T. theses are protected by copyright. They may be viewed from this source for any purpose, but reproduction or distribution in any format is prohibited without written permission. See provided URL for inquiries about permission. | en_US |
dc.rights.uri | http://dspace.mit.edu/handle/1721.1/28672 | en_US |
dc.rights.uri | http://dspace.mit.edu/handle/1721.1/7582 | |
dc.subject | Biology. | en_US |
dc.title | Characterization of the unfolding, refolding, and aggregation pathways of two protein implicated in cataractogenesis : human gamma D and human gamma S crystallin | en_US |
dc.type | Thesis | en_US |
dc.description.degree | Ph.D. | en_US |
dc.contributor.department | Massachusetts Institute of Technology. Department of Biology | |
dc.identifier.oclc | 58994905 | en_US |