Show simple item record

dc.contributor.authorAtabay, Kutay Deniz.en_US
dc.contributor.otherMassachusetts Institute of Technology. Department of Brain and Cognitive Sciences.en_US
dc.date.accessioned2021-10-22T20:27:18Z
dc.date.available2021-10-22T20:27:18Z
dc.date.copyright2019en_US
dc.date.issued2019en_US
dc.identifier.urihttps://hdl.handle.net/1721.1/133075
dc.descriptionThis electronic version was submitted by the student author. The certified thesis is available in the Institute Archives and Special Collections.en_US
dc.descriptionThesis: Ph. D. in Neuroscience, Massachusetts Institute of Technology, Department of Brain and Cognitive Sciences, June, 2019en_US
dc.descriptionCataloged from student-submitted PDF version of thesis.en_US
dc.descriptionIncludes bibliographical references.en_US
dc.description.abstractThere is an unbreakable link between shape and function. In biology, the architecture of cells, tissues and organisms, that have evolved adapting to the world around them, translate into specific functional outcomes. Self-organization is an adaptive, non-linear and dynamic process, where diverse ordered patterns emerge from an initially disordered and noisy state through local interactions between the elements of a system. This can lead to the fascinating biological diversity and functional complexity in such systems. Unwavering storms on the surface of Jupiter, patterns on the wing of a butterfly, a regenerating planarian eye, development of a neuronal circuit in the human brain can all be studied systematically using the conceptual tools derived from the field of self-organization. Here, I sought to address a central, but understudied, problem in animal regeneration: How do regenerative progenitors organize into complex replacement structures in the context of adult anatomy? I used the planarians as a system for studying regenerative progenitors and focused on eye regeneration to elucidate the mechanisms. I found that self-organization has a major role in determining the behavior of regenerative progenitors. This work revealed three properties that govern regenerative progenitor behavior, and these three properties in concert explain many previously mysterious aspects of how regeneration works: (i) self-organization, (ii) an extrinsic migratory target for progenitors, and (iii) a broad progenitor specification zone that allows progenitors to be targeted into self-organizing systems even if they are transiently in incorrect locations during the process of regeneration. These components yield a model with broad explanatory and predictive power. As an example, we were able to generate wild-type animals with 3, 4, or 5 eyes instead of 2 by simple manipulations of the system using the model developed. Remarkably, the extra eyes were stably maintained throughout the life of the animal, resulting in wild-type animals with an alternative and stable anatomical state. This model prominently incorporates self-organizing principles, which have been little explored in regeneration. The new conceptual model with broad explanatory power allowed us to address some of the fundamental previous mysteries of regeneration.en_US
dc.description.statementofresponsibilityby Kutay Deniz Atabay.en_US
dc.format.extent155 pagesen_US
dc.language.isoengen_US
dc.publisherMassachusetts Institute of Technologyen_US
dc.rightsMIT theses may be protected by copyright. Please reuse MIT thesis content according to the MIT Libraries Permissions Policy, which is available through the URL provided.en_US
dc.rights.urihttp://dspace.mit.edu/handle/1721.1/7582en_US
dc.subjectBrain and Cognitive Sciences.en_US
dc.titleMechanisms of self-organization in planarian regenerationen_US
dc.typeThesisen_US
dc.description.degreePh. D. in Neuroscienceen_US
dc.contributor.departmentMassachusetts Institute of Technology. Department of Brain and Cognitive Sciencesen_US
dc.identifier.oclc1264707888en_US
dc.description.collectionPh.D.inNeuroscience Massachusetts Institute of Technology, Department of Brain and Cognitive Sciencesen_US
dspace.imported2021-10-22T20:27:18Zen_US
mit.thesis.degreeDoctoralen_US
mit.thesis.departmentBrainen_US


Files in this item

Thumbnail

This item appears in the following Collection(s)

Show simple item record