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Amino Acids
Stryer, Lubert. Biochemistry. 4th ed. New York: W. H. Freeman & Co., 1995.
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Primary and Secondary Structures of Proteins
Dickerson, Richard. The Structure and Action of Proteins. New York: Harper & Row Publishers, 1969.
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Helices
Dickerson, Richard. The Structure and Action of Proteins, 1969.
Pauling, Linus. The Nature of Chemical Bond: Structural Properties, 2nd ed. New York: Cornell University Press, 1960.
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Beta-Sheets
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X-Ray Crystallography
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NMR
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Tools Used in Study and Analyses of Molecular Structures (II): Circular Dichroism, Raman, FTIR, AFM, TEM, SEM, Light Scattering
Branden, Carl, and John Tooze. Introduction to Protein Structure. New York: Garland Publishing, Inc., 1999.
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Transition: Molecular Structure of Other Fibrous Proteins
Branden, Carl, and John Tooze. Introduction to Protein Structure. New York: Garland Publishing, Inc., 1999.
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Molecular Structure of Collagen
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Silk
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Biominerals I: Shell and Diatom
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Frankel, Richard, and Richard Blackmore, eds. Iron Biominerals. New York: Plenum Press, 1991.
K, Shimizu, Cha J., G. D. Stucky, and D. E. Morse. "Silicatein alpha: cathepsin L-like protein in sponge biosilica." Proc Natl Acad Sci U S A. 95, (1998): 6234-8.
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Aizenberg, J., A. Tkachenko, S. Weiner, L. Addadi, and G. Hendler. "Calcitic microlenses as part of the photoreceptor system in brittlestars." Nature 412, (2001): 819-22.
Falini, Giuseppe, Shira Albeck, Steve Weiner, and Lia Addadi. "Control of Aragonite or Calcite Polymorphism by Mollusk Shell Macromolecules." Science 271, (1996): 67-69.
Biominerals II: Bone and Teeth
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Structure of Diatoms
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Molecular Structure of DNA and RNA
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DNA Molecular Machines
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Mao, C., W. Sun, Z. Shen, and N. C. Seeman. "A nanomechanical device based on the B-Z transition of DNA." Nature 397, 6715 (14 Jan): 144-6.
Yurke, B., A. J. Turberfield, A. P. Mills Jr., F. C. Simmel, and J. L. Neumann. "A DNA-fuelled molecular machine made of DNA." Nature 406, (2000): 605-8.
Braun, E., Y. Eichen, U. Sivan, and G. Ben-Yoseph. "DNA-templated assembly and electrode attachment of a conducting silver wire." Nature 391, (1998): 775-8.
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Self-Assembly of Lipids as Building Materials
Groves, J. T., S. G. Boxer, and H. M. McConnell. "Electric field-induced reorganization of two-component supported bilayer membranes." Proc Natl Acad Sci U S A. 94, (1997): 13390-5.
Lvov, Y. M., R. R. Price, J. V. Selinger, A. Singh, M. S. Spector, J. M. Schnur, and Langmuir. "Imaging Nanoscale Patterns on Biologically Derived Microstructures." 2000 16: 5932-5935.
Spector, M. S., K. R. Easwaran, G. Jyothi, J. V. Selinger, A. Singh, and J. M. Schnur. "Chiral molecular self-assembly of phospholipid tubules: a circular dichroism study." Proc Natl Acad Sci U S A. 93, (1996): 12943-6.
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Aussillous, P., and D. Quere. "Liquid marbles." Nature 411, (2001): 924-7.
Mahadevan, L. "Non-stick water." Nature 411, (2001): 895-6.
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Saccharides as Construction Materials
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The Living Colors™ “Paint in a Can”
Yang, F., L. G. Moss, and G. N. Phillips, Jr. "The molecular structure of green fluorescent protein." Nat Biotechnol 14, (1996): 1246-51.
Ormo, M., A. B. Cubitt, K. Kallio, L. A. Gross, R. Y. Tsien, and S. J. Remington. "Crystal structure of the Aequorea victoria green fluorescent protein." Science 273, (1996): 1392-5.
Crameri, A., E. A. Whitehorn, E. Tate, and W. P. Stemmer. "Improved green fluorescent protein by molecular evolution using DNA shuffling." Nat Biotechnol 14, (1996): 315-9.
Tsien, R. Y. "Rosy dawn for fluorescent proteins." Nat Biotechnol 17, (1999): 956-7.
Matz, M. V., A. F. Fradkov, Y. A. Labas, A. P. Savitsky, A. G. Zaraisky, M. L. Markelov, and S. A. Lukyanov. "Fluorescent proteins from nonbioluminescent Anthozoa species." Nat Biotechnol 17, (1999): 969-73.
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Other Examples of Designing Biological Materials
Urry, D. W. "Elastic molecular machines in metabolism and soft-tissue restoration." Trends Biotechnol 17, (1999): 249-57.
Fernandez-Lopez, S., H. S. Kim, E. C. Choi, M. Delgado, J. R. Granja, A. Khasanov, K. Kraehenbuehl, G. Long, D. A. Weinberger, K. M. Wilcoxen, and M. R. Ghadiri. "Antibacterial agents based on the cyclic D,L-alpha-peptide architecture." Nature 412, (2001): 452-5.
Winfree, E., F. Liu, L. A. Wenzler, and N. C. Seeman. "Design and self-assembly of two-dimensional DNA crystals." Nature 394, (1998): 539-44.
Aggeli, A., I. A. Nyrkova, M. Bell, R. Harding, L. Carrick, T. C. McLeish, A. N. Semenov, and N. Boden. "Hierarchical self-assembly of chiral rod-like molecules as a model for peptide beta -sheet tapes, ribbons, fibrils, and fibers." Proc Natl Acad Sci U S A. 98, (2001): 11857-62.
Xu, G., W. Wang, J. T. Groves, and M. H. Hecht. "Self-assembled monolayers from a designed combinatorial library of de novo beta-sheet proteins." Proc Natl Acad Sci U S A. 98, (2001): 3652-7.
West, M. W., W. Wang, J. Patterson, J. D. Mancias, J. R. Beasley, and M. H. Hecht. "De novo amyloid proteins from designed combinatorial libraries." Proc Natl Acad Sci U S A. 96, (1999): 11211-6.
Schnur, Joel M. "Lipid Tubules: A Paradigm for Molecularly Engineered Structures." Science 262, (1993): 1669-1676.
Saghatelian, A., Y. Yokobayashi, K. Soltani, and M. R. Ghadiri. "A chiroselective peptide replicator." Nature 409, (2001): 797-801.
Mihara, H., and Y. Takahashi. "Engineering peptides and proteins that undergo alpha-to-beta transitions." Curr Opin Struct Biol. 7, (1997): 501-8.
Aggeli, A., M. Bell, N. Boden, J. N. Keen, P. F. Knowles, T. C. McLeish, M. Pitkeathly, and S. E. Radford. "Responsive gels formed by the spontaneous self-assembly of peptides into polymeric beta-sheet tapes." Nature 386, (1997): 259-62.
Takahashi, Yuta, Akihiko Ueno, and Hisakazu Mihara. "Design of a Peptide Undergoing alpha - beta Structural Transition and Amyloid Fibrillogenesis by the Introduction of a Hydrophobic Defect 1998, 4:2475-2484.
Hecht, M. H. "De novo design of beta-sheet proteins." Proc Natl Acad Sci U S A. 91, (1994): 8729-30.
Dobson, C. M. "Protein misfolding, evolution and disease." Trends Biochem Sci. 24, (1999): 329-32.
Urry, D. W. "Physical Chemistry of Biological Free Energy Transduction As Demonstrated by Elastic Protein-Based Polymers J." Phys. Chem. B. 101, (1997); 11007-11028.
Quinn, T. P., N. B. Tweedy, R. W. Williams, J. S. Richardson, and D. C. Richardson. "Betadoublet: de novo design, synthesis, and characterization of a beta-sandwich protein." Proc Natl Acad Sci U S A. 91, (1994): 8747-51.