| dc.contributor.author | Durand, Neva C. | |
| dc.contributor.author | Robinson, James T. | |
| dc.contributor.author | Shamim, Muhammad S. | |
| dc.contributor.author | Machol, Ido | |
| dc.contributor.author | Aiden, Erez Lieberman | |
| dc.contributor.author | Lander, Eric Steven | |
| dc.contributor.author | Mesirov, Jill P. | |
| dc.date.accessioned | 2016-12-08T21:21:29Z | |
| dc.date.available | 2016-12-08T21:21:29Z | |
| dc.date.issued | 2016-07 | |
| dc.date.submitted | 2015-07 | |
| dc.identifier.issn | 24054712 | |
| dc.identifier.uri | http://hdl.handle.net/1721.1/105759 | |
| dc.description.abstract | Hi-C experiments study how genomes fold in 3D, generating contact maps containing features as small as 20 bp and as large as 200 Mb. Here we introduce Juicebox, a tool for exploring Hi-C and other contact map data. Juicebox allows users to zoom in and out of Hi-C maps interactively, just as a user of Google Earth might zoom in and out of a geographic map. Maps can be compared to one another, or to 1D tracks or 2D feature sets. | en_US |
| dc.description.sponsorship | National Institutes of Health (U.S.) (NIH New Innovator Award (1DP2OD008540- 01)) | en_US |
| dc.description.sponsorship | National Human Genome Research Institute (U.S.) ((NHGRI) Centers of Excellence in Genomic Science (P50HG006193)) | en_US |
| dc.description.sponsorship | NVIDIA Corporation | en_US |
| dc.description.sponsorship | International Business Machines Corporation (IBM University Challenge Award) | en_US |
| dc.description.sponsorship | Google (Firm) (Google Research Award) | en_US |
| dc.description.sponsorship | Baylor College of Medicine (McNair Medical Institute Scholar Award) | en_US |
| dc.description.sponsorship | Cancer Prevention and Research Institute of Texas (Scholar Award (R1304)) | en_US |
| dc.description.sponsorship | Presidential Early Career Award for Scientists and Engineers | en_US |
| dc.description.sponsorship | National Science Foundation (U.S.) (NSF Physics Frontiers Centers (Center for Theoretical Biological Physics)) | en_US |
| dc.description.sponsorship | Robert A. Welch Foundation | en_US |
| dc.description.sponsorship | National Institute of General Medical Sciences (U.S.) (NIGMS R01GM074024) | en_US |
| dc.description.sponsorship | National Human Genome Research Institute (U.S.) (NHGRI (HG003067)) | en_US |
| dc.language.iso | en_US | |
| dc.publisher | Elsevier | en_US |
| dc.relation.isversionof | http://dx.doi.org/10.1016/j.cels.2015.07.012 | en_US |
| dc.rights | Creative Commons Attribution 4.0 International License | en_US |
| dc.rights.uri | http://creativecommons.org/licenses/by/4.0/ | en_US |
| dc.source | Elsevier | en_US |
| dc.title | Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom | en_US |
| dc.type | Article | en_US |
| dc.identifier.citation | Durand, Neva C., James T. Robinson, Muhammad S. Shamim, Ido Machol, Jill P. Mesirov, Eric S. Lander, and Erez Lieberman Aiden. “Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom.” Cell Systems 3, no. 1 (July 2016): 99-101. | en_US |
| dc.contributor.department | Massachusetts Institute of Technology. Department of Biology | en_US |
| dc.contributor.department | Koch Institute for Integrative Cancer Research at MIT | en_US |
| dc.contributor.mitauthor | Mesirov, Jill P | |
| dc.contributor.mitauthor | Lander, Eric Steven | |
| dc.relation.journal | Cell Systems | en_US |
| dc.eprint.version | Final published version | en_US |
| dc.type.uri | http://purl.org/eprint/type/JournalArticle | en_US |
| eprint.status | http://purl.org/eprint/status/PeerReviewed | en_US |
| dspace.orderedauthors | Durand, Neva C.; Robinson, James T.; Shamim, Muhammad S.; Machol, Ido; Mesirov, Jill P.; Lander, Eric S.; Aiden, Erez Lieberman | en_US |
| dspace.embargo.terms | N | en_US |
| mit.license | PUBLISHER_CC | en_US |
| mit.metadata.status | Complete | |
