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MIT Open Access Articles

Research and Teaching Output of the MIT Community

MIT Open Access Articles


The MIT Open Access Articles collection consists of scholarly articles written by MIT-affiliated authors that are made available through DSpace@MIT under the MIT Faculty Open Access Policy, or under related publisher agreements. Articles in this collection generally reflect changes made during peer-review.

Version details are supplied for each paper in the collection:

  • Original manuscript: author's manuscript prior to formal peer review
  • Author's final manuscript: final author's manuscript post peer review, without publisher's formatting or copy editing
  • Final published version: final published article, as it appeared in a journal, conference proceedings, or other formally published context (this version appears here only if allowable under publisher's policy)

Some peer-reviewed scholarly articles are available through other DSpace@MIT collections, such as those for departments, labs, and centers.

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  • Raychowdhury, Raktima; Jovanovic, Marko; Stumpo, Deborah J.; Pauli, Andrea; Hacohen, Nir; Schier, Alexander F.; Blackshear, Perry J.; Friedman, Nir; Amit, Ido; Rabani, Michal; Rooney, Michael Steven; Regev, Aviv (Elsevier, 2014-12)
    Cells control dynamic transitions in transcript levels by regulating transcription, processing, and/or degradation through an integrated regulatory strategy. Here, we combine RNA metabolic labeling, rRNA-depleted RNA-seq, ...
  • Qu, Kun; Garamszegi, Sara; Wu, Felix; Thorvaldsdottir, Helga; Liefeld, Ted; Ocana, Marco; Pochet, Nathalie; Robinson, James T; Demchak, Barry; Hull, Tim; Ben-Artzi, Gil; Blankenberg, Daniel; Barber, Galt P; Lee, Brian T; Kuhn, Robert M; Nekrutenko, Anton; Segal, Eran; Ideker, Trey; Reich, Michael; Chang, Howard Y; Mesirov, Jill P; Borges-Rivera, Diego Ramon; Regev, Aviv (Nature Publishing Group, 2016-01)
    Complex biomedical analyses require the use of multiple software tools in concert and remain challenging for much of the biomedical research community. We introduce GenomeSpace (, a cloud-based, ...
  • Jovanovic, M.; Mertins, P.; Przybylski, D.; Chevrier, N.; Satija, R.; Rodriguez, E. H.; Fields, A. P.; Schwartz, S.; Raychowdhury, R.; Mumbach, M. R.; Eisenhaure, T.; Rabani, M.; Gennert, D.; Lu, D.; Delorey, T.; Weissman, J. S.; Carr, S. A.; Hacohen, N.; Regev, Aviv; Rooney, Michael Steven (American Association for the Advancement of Science (AAAS), 2015-03)
    Protein expression is regulated by production and degradation of mRNAs and proteins, but their specific relationships remain unknown. We combine measurements of protein production and degradation and mRNA dynamics to build ...
  • Peters, Owen M.; Cabrera, Gabriela Toro; Tran, Helene; Gendron, Tania F.; McKeon, Jeanne E.; Metterville, Jake; Weiss, Alexandra; Wightman, Nicholas; Salameh, Johnny; Kim, Juhyun; Sun, Huaming; Boylan, Kevin B.; Dickson, Dennis; Kennedy, Zachary; Lin, Ziqiang; Zhang, Yong-Jie; Daughrity, Lillian; Jung, Chris; Gao, Fen-Biao; Bosco, Daryl A.; Brown, Solange P.; de Jong, Pieter; Petrucelli, Leonard; Mueller, Christian; Brown, Robert H.; Sapp, Peter C; Horvitz, Howard Robert (Elsevier, 2015-12)
    A non-coding hexanucleotide repeat expansion in the C9ORF72 gene is the most common mutation associated with familial amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). To investigate the pathological ...
  • Taylor, Frank E (Springer-Verlag, 2013-06)
    A search for a charged Higgs boson (H[superscript +]) in t[bar over t] decays is presented, where one of the top quarks decays via t → H[superscript +]b, followed by H[superscript +] → two jets (c[bar over s]). The other ...
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