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Chromosome segregation errors generate a diverse spectrum of simple and complex genomic rearrangements

Author(s)
Pyntikova, Tatyana; Page, David C.
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Abstract
Cancer genomes are frequently characterized by numerical and structural chromosomal abnormalities. Here we integrated a centromere-specific inactivation approach with selection for a conditionally essential gene, a strategy termed CEN-SELECT, to systematically interrogate the structural landscape of mis-segregated chromosomes. We show that single-chromosome mis-segregation into a micronucleus can directly trigger a broad spectrum of genomic rearrangement types. Cytogenetic profiling revealed that mis-segregated chromosomes exhibit 120-fold-higher susceptibility to developing seven major categories of structural aberrations, including translocations, insertions, deletions, and complex reassembly through chromothripsis coupled to classical non-homologous end joining. Whole-genome sequencing of clonally propagated rearrangements identified random patterns of clustered breakpoints with copy-number alterations resulting in interspersed gene deletions and extrachromosomal DNA amplification events. We conclude that individual chromosome segregation errors during mitotic cell division are sufficient to drive extensive structural variations that recapitulate genomic features commonly associated with human disease.
Date issued
2019-04
URI
https://hdl.handle.net/1721.1/125106
Department
Whitehead Institute for Biomedical Research; Massachusetts Institute of Technology. Department of Biology
Journal
Nature genetics
Publisher
Springer Science and Business Media LLC
Citation
Ly, Peter et al. “Chromosome segregation errors generate a diverse spectrum of simple and complex genomic rearrangements.” Nature genetics 51 (2019): 705-715 © 2019 The Author(s)
Version: Author's final manuscript
ISSN
1061-4036

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