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dc.contributor.authorVenkatraman, Lakshmi
dc.contributor.authorLi, Huipeng
dc.contributor.authorDewey, C. Forbes
dc.contributor.authorWhite, Jacob K.
dc.contributor.authorBhowmick, Sourav S.
dc.contributor.authorYu, Hanry
dc.contributor.authorTucker-Kellogg, Lisa
dc.contributor.authorWhite, Jacob K.
dc.date.accessioned2014-12-08T17:27:04Z
dc.date.available2014-12-08T17:27:04Z
dc.date.issued2011-10
dc.date.submitted2011-04
dc.identifier.issn00063495
dc.identifier.issn1542-0086
dc.identifier.urihttp://hdl.handle.net/1721.1/92049
dc.description.abstractPlasmin (PLS) and urokinase-type plasminogen activator (UPA) are ubiquitous proteases that regulate the extracellular environment. Although they are secreted in inactive forms, they can activate each other through proteolytic cleavage. This mutual interplay creates the potential for complex dynamics, which we investigated using mathematical modeling and in vitro experiments. We constructed ordinary differential equations to model the conversion of precursor plasminogen into active PLS, and precursor urokinase (scUPA) into active urokinase (tcUPA). Although neither PLS nor UPA exhibits allosteric cooperativity, modeling showed that cooperativity occurred at the system level because of substrate competition. Computational simulations and bifurcation analysis predicted that the system would be bistable over a range of parameters for cooperativity and positive feedback. Cell-free experiments with recombinant proteins tested key predictions of the model. PLS activation in response to scUPA stimulus was found to be cooperative in vitro. Finally, bistability was demonstrated in vitro by the presence of two significantly different steady-state levels of PLS activation for the same levels of stimulus. We conclude that ultrasensitive, bistable activation of UPA-PLS is possible in the presence of substrate competition. An ultrasensitive threshold for activation of PLS and UPA would have ramifications for normal and disease processes, including angiogenesis, metastasis, wound healing, and fibrosis.en_US
dc.description.sponsorshipSingapore-MIT Alliance Computational and Systems Biology Flagship Projecten_US
dc.description.sponsorshipSingapore-MIT Alliance Computational and Systems Biology Programme Grantsen_US
dc.language.isoen_US
dc.publisherElsevieren_US
dc.relation.isversionofhttp://dx.doi.org/10.1016/j.bpj.2011.08.054en_US
dc.rightsArticle is made available in accordance with the publisher's policy and may be subject to US copyright law. Please refer to the publisher's site for terms of use.en_US
dc.sourceElsevieren_US
dc.titleSteady States and Dynamics of Urokinase-Mediated Plasmin Activation In Silico and In Vitroen_US
dc.typeArticleen_US
dc.identifier.citationVenkatraman, Lakshmi, Huipeng Li, C. Forbes Dewey, Jacob K. White, Sourav S. Bhowmick, Hanry Yu, and Lisa Tucker-Kellogg. “Steady States and Dynamics of Urokinase-Mediated Plasmin Activation In Silico and In Vitro.” Biophysical Journal 101, no. 8 (October 2011): 1825–1834. © 2011 Biophysical Societyen_US
dc.contributor.departmentMassachusetts Institute of Technology. Department of Biological Engineeringen_US
dc.contributor.departmentMassachusetts Institute of Technology. Department of Electrical Engineering and Computer Scienceen_US
dc.contributor.departmentMassachusetts Institute of Technology. Department of Mechanical Engineeringen_US
dc.contributor.mitauthorDewey, C. Forbesen_US
dc.contributor.mitauthorWhite, Jacob K.en_US
dc.relation.journalBiophysical Journalen_US
dc.eprint.versionFinal published versionen_US
dc.type.urihttp://purl.org/eprint/type/JournalArticleen_US
eprint.statushttp://purl.org/eprint/status/PeerRevieweden_US
dspace.orderedauthorsVenkatraman, Lakshmi; Li, Huipeng; Dewey, C. Forbes; White, Jacob K.; Bhowmick, Sourav S.; Yu, Hanry; Tucker-Kellogg, Lisaen_US
dc.identifier.orcidhttps://orcid.org/0000-0003-1080-4005
dc.identifier.orcidhttps://orcid.org/0000-0001-7387-3572
mit.licensePUBLISHER_POLICYen_US
mit.metadata.statusComplete


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