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Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace

dc.contributor.authorQu, Kun
dc.contributor.authorGaramszegi, Sara
dc.contributor.authorWu, Felix
dc.contributor.authorThorvaldsdottir, Helga
dc.contributor.authorLiefeld, Ted
dc.contributor.authorOcana, Marco
dc.contributor.authorPochet, Nathalie
dc.contributor.authorRobinson, James T
dc.contributor.authorDemchak, Barry
dc.contributor.authorHull, Tim
dc.contributor.authorBen-Artzi, Gil
dc.contributor.authorBlankenberg, Daniel
dc.contributor.authorBarber, Galt P
dc.contributor.authorLee, Brian T
dc.contributor.authorKuhn, Robert M
dc.contributor.authorNekrutenko, Anton
dc.contributor.authorSegal, Eran
dc.contributor.authorIdeker, Trey
dc.contributor.authorReich, Michael
dc.contributor.authorChang, Howard Y
dc.contributor.authorMesirov, Jill P
dc.contributor.authorBorges-Rivera, Diego Ramon
dc.contributor.authorRegev, Aviv
dc.date.accessioned2016-12-06T21:34:11Z
dc.date.available2016-12-06T21:34:11Z
dc.date.issued2016-01
dc.date.submitted2015-04
dc.identifier.issn1548-7091
dc.identifier.issn1548-7105
dc.identifier.urihttp://hdl.handle.net/1721.1/105733
dc.description.abstractComplex biomedical analyses require the use of multiple software tools in concert and remain challenging for much of the biomedical research community. We introduce GenomeSpace (http://www.genomespace.org), a cloud-based, cooperative community resource that currently supports the streamlined interaction of 20 bioinformatics tools and data resources. To facilitate integrative analysis by non-programmers, it offers a growing set of 'recipes', short workflows to guide investigators through high-utility analysis tasks.en_US
dc.description.sponsorshipNational Institutes of Health (U.S.) (Grants NHGRI P01, HG005062 and U41 HG007517)en_US
dc.description.sponsorshipAmazon.com (Firm)en_US
dc.language.isoen_US
dc.publisherNature Publishing Groupen_US
dc.relation.isversionofhttp://dx.doi.org/10.1038/nmeth.3732en_US
dc.rightsArticle is made available in accordance with the publisher's policy and may be subject to US copyright law. Please refer to the publisher's site for terms of use.en_US
dc.sourcePMCen_US
dc.titleIntegrative genomic analysis by interoperation of bioinformatics tools in GenomeSpaceen_US
dc.typeArticleen_US
dc.identifier.citationQu, Kun et al. “Integrative Genomic Analysis by Interoperation of Bioinformatics Tools in GenomeSpace.” Nature Methods 13.3 (2016): 245–247.en_US
dc.contributor.departmentMassachusetts Institute of Technology. Department of Biologyen_US
dc.contributor.mitauthorBorges-Rivera, Diego Ramon
dc.contributor.mitauthorRegev, Aviv
dc.relation.journalNature Methodsen_US
dc.eprint.versionAuthor's final manuscripten_US
dc.type.urihttp://purl.org/eprint/type/JournalArticleen_US
eprint.statushttp://purl.org/eprint/status/PeerRevieweden_US
dspace.orderedauthorsQu, Kun; Garamszegi, Sara; Wu, Felix; Thorvaldsdottir, Helga; Liefeld, Ted; Ocana, Marco; Borges-Rivera, Diego; Pochet, Nathalie; Robinson, James T; Demchak, Barry; Hull, Tim; Ben-Artzi, Gil; Blankenberg, Daniel; Barber, Galt P; Lee, Brian T; Kuhn, Robert M; Nekrutenko, Anton; Segal, Eran; Ideker, Trey; Reich, Michael; Regev, Aviv; Chang, Howard Y; Mesirov, Jill Pen_US
dspace.embargo.termsNen_US
dc.identifier.orcidhttps://orcid.org/0000-0002-1650-2289
dc.identifier.orcidhttps://orcid.org/0000-0001-8567-2049
mit.licensePUBLISHER_POLICYen_US


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